[1] "ofn"            "-oTCOADREAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COADREAD-TP/22555066/COADREAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COADREAD-TP/22592966/transformed.cor.cli.txt"

nPatients in clinical file=628, in cluster file=489, common to both=489
[1] "Reduce the number of clustering variables from 2225 to 2222."
[1] 2222  489
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          403            86 
  APC MUTATED APC WILD-TYPE 
          403            86 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           323            166 
  TP53 MUTATED TP53 WILD-TYPE 
           323            166 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              83              406 
  ARID1A MUTATED ARID1A WILD-TYPE 
              83              406 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             47             442 
  RNF43 MUTATED RNF43 WILD-TYPE 
             47             442 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              29              460 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              29              460 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
            41            448 
  SOX9 MUTATED SOX9 WILD-TYPE 
            41            448 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               60               429 
  FAM123B MUTATED FAM123B WILD-TYPE 
               60               429 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
               17               472 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
               17               472 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
           17           472 
  B2M MUTATED B2M WILD-TYPE 
           17           472 
[1] "TXNDC2 MUTATION ANALYSIS"
[1] 3
  TXNDC2 MUTATED TXNDC2 WILD-TYPE 
              24              465 
  TXNDC2 MUTATED TXNDC2 WILD-TYPE 
              24              465 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              28              461 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              28              461 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            86            403 
  CDH1 MUTATED CDH1 WILD-TYPE 
            86            403 
[1] "MLH1 MUTATION ANALYSIS"
[1] 3
  MLH1 MUTATED MLH1 WILD-TYPE 
            59            430 
  MLH1 MUTATED MLH1 WILD-TYPE 
            59            430 
[1] "BCOR MUTATION ANALYSIS"
[1] 3
  BCOR MUTATED BCOR WILD-TYPE 
            30            459 
  BCOR MUTATED BCOR WILD-TYPE 
            30            459 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             22             467 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             22             467 
[1] "WNT1 MUTATION ANALYSIS"
[1] 3
  WNT1 MUTATED WNT1 WILD-TYPE 
             7            482 
  WNT1 MUTATED WNT1 WILD-TYPE 
             7            482 
[1] "FMN2 MUTATION ANALYSIS"
[1] 3
  FMN2 MUTATED FMN2 WILD-TYPE 
            63            426 
  FMN2 MUTATED FMN2 WILD-TYPE 
            63            426 
[1] "GGT1 MUTATION ANALYSIS"
[1] 3
  GGT1 MUTATED GGT1 WILD-TYPE 
            10            479 
  GGT1 MUTATED GGT1 WILD-TYPE 
            10            479 
[1] "STARD3NL MUTATION ANALYSIS"
[1] 3
  STARD3NL MUTATED STARD3NL WILD-TYPE 
                15                474 
  STARD3NL MUTATED STARD3NL WILD-TYPE 
                15                474 
[1] "SELPLG MUTATION ANALYSIS"
[1] 3
  SELPLG MUTATED SELPLG WILD-TYPE 
              19              470 
  SELPLG MUTATED SELPLG WILD-TYPE 
              19              470 
[1] "OR4D10 MUTATION ANALYSIS"
[1] 3
  OR4D10 MUTATED OR4D10 WILD-TYPE 
              16              473 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
              16              473 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
           67           422 
  NF2 MUTATED NF2 WILD-TYPE 
           67           422 
[1] "MAPK6 MUTATION ANALYSIS"
[1] 3
  MAPK6 MUTATED MAPK6 WILD-TYPE 
             19             470 
  MAPK6 MUTATED MAPK6 WILD-TYPE 
             19             470 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            13            476 
  RHOA MUTATED RHOA WILD-TYPE 
            13            476 
[1] "FAM9A MUTATION ANALYSIS"
[1] 3
  FAM9A MUTATED FAM9A WILD-TYPE 
             12             477 
  FAM9A MUTATED FAM9A WILD-TYPE 
             12             477 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
            12            477 
  EGR1 MUTATED EGR1 WILD-TYPE 
            12            477 
[1] "PRKDC MUTATION ANALYSIS"
[1] 3
  PRKDC MUTATED PRKDC WILD-TYPE 
             70             419 
  PRKDC MUTATED PRKDC WILD-TYPE 
             70             419 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
            18            471 
  RPTN MUTATED RPTN WILD-TYPE 
            18            471 
[1] "THOC7 MUTATION ANALYSIS"
[1] 3
  THOC7 MUTATED THOC7 WILD-TYPE 
             11             478 
  THOC7 MUTATED THOC7 WILD-TYPE 
             11             478 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
          107           382 
  NF1 MUTATED NF1 WILD-TYPE 
          107           382 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
            131             358 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
            131             358 
[1] "CHUK MUTATION ANALYSIS"
[1] 3
  CHUK MUTATED CHUK WILD-TYPE 
            24            465 
  CHUK MUTATED CHUK WILD-TYPE 
            24            465 
[1] "ATXN3L MUTATION ANALYSIS"
[1] 3
  ATXN3L MUTATED ATXN3L WILD-TYPE 
              20              469 
  ATXN3L MUTATED ATXN3L WILD-TYPE 
              20              469 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
           43           446 
  MGA MUTATED MGA WILD-TYPE 
           43           446 
[1] "TPRKB MUTATION ANALYSIS"
[1] 3
  TPRKB MUTATED TPRKB WILD-TYPE 
             10             479 
  TPRKB MUTATED TPRKB WILD-TYPE 
             10             479 
[1] "MVK MUTATION ANALYSIS"
[1] 3
  MVK MUTATED MVK WILD-TYPE 
           14           475 
  MVK MUTATED MVK WILD-TYPE 
           14           475 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              22              467 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              22              467 
[1] "BCL9 MUTATION ANALYSIS"
[1] 3
  BCL9 MUTATED BCL9 WILD-TYPE 
            27            462 
  BCL9 MUTATED BCL9 WILD-TYPE 
            27            462 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             36             453 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             36             453 
[1] "P2RY13 MUTATION ANALYSIS"
[1] 3
  P2RY13 MUTATED P2RY13 WILD-TYPE 
              15              474 
  P2RY13 MUTATED P2RY13 WILD-TYPE 
              15              474 
[1] "ST3GAL6 MUTATION ANALYSIS"
[1] 3
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
               12               477 
  ST3GAL6 MUTATED ST3GAL6 WILD-TYPE 
               12               477 
[1] "IQCD MUTATION ANALYSIS"
[1] 3
  IQCD MUTATED IQCD WILD-TYPE 
            13            476 
  IQCD MUTATED IQCD WILD-TYPE 
            13            476 
[1] "PLEKHF2 MUTATION ANALYSIS"
[1] 3
  PLEKHF2 MUTATED PLEKHF2 WILD-TYPE 
               12               477 
  PLEKHF2 MUTATED PLEKHF2 WILD-TYPE 
               12               477 
[1] "NR1H3 MUTATION ANALYSIS"
[1] 3
  NR1H3 MUTATED NR1H3 WILD-TYPE 
             15             474 
  NR1H3 MUTATED NR1H3 WILD-TYPE 
             15             474 
[1] "ALPK2 MUTATION ANALYSIS"
[1] 3
  ALPK2 MUTATED ALPK2 WILD-TYPE 
             46             443 
  ALPK2 MUTATED ALPK2 WILD-TYPE 
             46             443 
[1] "ASXL1 MUTATION ANALYSIS"
[1] 3
  ASXL1 MUTATED ASXL1 WILD-TYPE 
             46             443 
  ASXL1 MUTATED ASXL1 WILD-TYPE 
             46             443 
[1] "ALG12 MUTATION ANALYSIS"
[1] 3
  ALG12 MUTATED ALG12 WILD-TYPE 
              7             482 
  ALG12 MUTATED ALG12 WILD-TYPE 
              7             482 
[1] "PTCH1 MUTATION ANALYSIS"
[1] 3
  PTCH1 MUTATED PTCH1 WILD-TYPE 
            103             386 
  PTCH1 MUTATED PTCH1 WILD-TYPE 
            103             386 
[1] "GRB2 MUTATION ANALYSIS"
[1] 3
  GRB2 MUTATED GRB2 WILD-TYPE 
            11            478 
  GRB2 MUTATED GRB2 WILD-TYPE 
            11            478 
[1] "NLRC4 MUTATION ANALYSIS"
[1] 3
  NLRC4 MUTATED NLRC4 WILD-TYPE 
             26             463 
  NLRC4 MUTATED NLRC4 WILD-TYPE 
             26             463 
[1] "PLAGL2 MUTATION ANALYSIS"
[1] 3
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               6              483 
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               6              483 
[1] "C11ORF30 MUTATION ANALYSIS"
[1] 3
  C11ORF30 MUTATED C11ORF30 WILD-TYPE 
                23                466 
  C11ORF30 MUTATED C11ORF30 WILD-TYPE 
                23                466 
[1] "DIP2B MUTATION ANALYSIS"
[1] 3
  DIP2B MUTATED DIP2B WILD-TYPE 
             30             459 
  DIP2B MUTATED DIP2B WILD-TYPE 
             30             459 
[1] "PRRG1 MUTATION ANALYSIS"
[1] 3
  PRRG1 MUTATED PRRG1 WILD-TYPE 
             14             475 
  PRRG1 MUTATED PRRG1 WILD-TYPE 
             14             475 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              51              438 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              51              438 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
             15             474 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
             15             474 
[1] "IFT57 MUTATION ANALYSIS"
[1] 3
  IFT57 MUTATED IFT57 WILD-TYPE 
             13             476 
  IFT57 MUTATED IFT57 WILD-TYPE 
             13             476 
[1] "RSPH3 MUTATION ANALYSIS"
[1] 3
  RSPH3 MUTATED RSPH3 WILD-TYPE 
             11             478 
  RSPH3 MUTATED RSPH3 WILD-TYPE 
             11             478 
[1] "RLIM MUTATION ANALYSIS"
[1] 3
  RLIM MUTATED RLIM WILD-TYPE 
            18            471 
  RLIM MUTATED RLIM WILD-TYPE 
            18            471 
[1] "ROS1 MUTATION ANALYSIS"
[1] 3
  ROS1 MUTATED ROS1 WILD-TYPE 
            54            435 
  ROS1 MUTATED ROS1 WILD-TYPE 
            54            435 
[1] "MPHOSPH10 MUTATION ANALYSIS"
[1] 3
  MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE 
                 18                 471 
  MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE 
                 18                 471 
[1] "VCX2 MUTATION ANALYSIS"
[1] 3
  VCX2 MUTATED VCX2 WILD-TYPE 
            12            477 
  VCX2 MUTATED VCX2 WILD-TYPE 
            12            477 
[1] "C2ORF29 MUTATION ANALYSIS"
[1] 3
  C2ORF29 MUTATED C2ORF29 WILD-TYPE 
               19               470 
  C2ORF29 MUTATED C2ORF29 WILD-TYPE 
               19               470 
[1] "DDX26B MUTATION ANALYSIS"
[1] 3
  DDX26B MUTATED DDX26B WILD-TYPE 
              16              473 
  DDX26B MUTATED DDX26B WILD-TYPE 
              16              473 
[1] "RBPJ MUTATION ANALYSIS"
[1] 3
  RBPJ MUTATED RBPJ WILD-TYPE 
            18            471 
  RBPJ MUTATED RBPJ WILD-TYPE 
            18            471 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
            144             345 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
            144             345 
[1] "SLC26A8 MUTATION ANALYSIS"
[1] 3
  SLC26A8 MUTATED SLC26A8 WILD-TYPE 
               19               470 
  SLC26A8 MUTATED SLC26A8 WILD-TYPE 
               19               470 
[1] "RBBP7 MUTATION ANALYSIS"
[1] 3
  RBBP7 MUTATED RBBP7 WILD-TYPE 
             17             472 
  RBBP7 MUTATED RBBP7 WILD-TYPE 
             17             472 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
          102           387 
  RB1 MUTATED RB1 WILD-TYPE 
          102           387 
[1] "L1TD1 MUTATION ANALYSIS"
[1] 3
  L1TD1 MUTATED L1TD1 WILD-TYPE 
             20             469 
  L1TD1 MUTATED L1TD1 WILD-TYPE 
             20             469 
[1] "TOP2B MUTATION ANALYSIS"
[1] 3
  TOP2B MUTATED TOP2B WILD-TYPE 
             25             464 
  TOP2B MUTATED TOP2B WILD-TYPE 
             25             464 
[1] "DCLK2 MUTATION ANALYSIS"
[1] 3
  DCLK2 MUTATED DCLK2 WILD-TYPE 
             16             473 
  DCLK2 MUTATED DCLK2 WILD-TYPE 
             16             473 
[1] "FKBP9 MUTATION ANALYSIS"
[1] 3
  FKBP9 MUTATED FKBP9 WILD-TYPE 
             19             470 
  FKBP9 MUTATED FKBP9 WILD-TYPE 
             19             470 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
           186            303 
  PTEN MUTATED PTEN WILD-TYPE 
           186            303 
[1] "C14ORF184 MUTATION ANALYSIS"
[1] 3
  C14ORF184 MUTATED C14ORF184 WILD-TYPE 
                  7                 482 
  C14ORF184 MUTATED C14ORF184 WILD-TYPE 
                  7                 482 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
             19             470 
  HLA-A MUTATED HLA-A WILD-TYPE 
             19             470 
[1] "BMPR2 MUTATION ANALYSIS"
[1] 3
  BMPR2 MUTATED BMPR2 WILD-TYPE 
             36             453 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
             36             453 
[1] "FYN MUTATION ANALYSIS"
[1] 3
  FYN MUTATED FYN WILD-TYPE 
           17           472 
  FYN MUTATED FYN WILD-TYPE 
           17           472 
[1] "ALDH1A3 MUTATION ANALYSIS"
[1] 3
  ALDH1A3 MUTATED ALDH1A3 WILD-TYPE 
               19               470 
  ALDH1A3 MUTATED ALDH1A3 WILD-TYPE 
               19               470 
[1] "LARP4B MUTATION ANALYSIS"
[1] 3
  LARP4B MUTATED LARP4B WILD-TYPE 
              31              458 
  LARP4B MUTATED LARP4B WILD-TYPE 
              31              458 
[1] "ZDHHC7 MUTATION ANALYSIS"
[1] 3
  ZDHHC7 MUTATED ZDHHC7 WILD-TYPE 
              12              477 
  ZDHHC7 MUTATED ZDHHC7 WILD-TYPE 
              12              477 
[1] "GPATCH8 MUTATION ANALYSIS"
[1] 3
  GPATCH8 MUTATED GPATCH8 WILD-TYPE 
               15               474 
  GPATCH8 MUTATED GPATCH8 WILD-TYPE 
               15               474 
[1] "BCORL1 MUTATION ANALYSIS"
[1] 3
  BCORL1 MUTATED BCORL1 WILD-TYPE 
              27              462 
  BCORL1 MUTATED BCORL1 WILD-TYPE 
              27              462 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             46             443 
  SETD2 MUTATED SETD2 WILD-TYPE 
             46             443 
[1] "MAP4K3 MUTATION ANALYSIS"
[1] 3
  MAP4K3 MUTATED MAP4K3 WILD-TYPE 
              21              468 
  MAP4K3 MUTATED MAP4K3 WILD-TYPE 
              21              468 
[1] "SLC12A6 MUTATION ANALYSIS"
[1] 3
  SLC12A6 MUTATED SLC12A6 WILD-TYPE 
               26               463 
  SLC12A6 MUTATED SLC12A6 WILD-TYPE 
               26               463 
[1] "CDK12 MUTATION ANALYSIS"
[1] 3
  CDK12 MUTATED CDK12 WILD-TYPE 
             33             456 
  CDK12 MUTATED CDK12 WILD-TYPE 
             33             456 
[1] "NEXN MUTATION ANALYSIS"
[1] 3
  NEXN MUTATED NEXN WILD-TYPE 
            20            469 
  NEXN MUTATED NEXN WILD-TYPE 
            20            469 
[1] "GMPS MUTATION ANALYSIS"
[1] 3
  GMPS MUTATED GMPS WILD-TYPE 
            17            472 
  GMPS MUTATED GMPS WILD-TYPE 
            17            472 
[1] "PTGDR MUTATION ANALYSIS"
[1] 3
  PTGDR MUTATED PTGDR WILD-TYPE 
              9             480 
  PTGDR MUTATED PTGDR WILD-TYPE 
              9             480 
[1] "PRPS1 MUTATION ANALYSIS"
[1] 3
  PRPS1 MUTATED PRPS1 WILD-TYPE 
              9             480 
  PRPS1 MUTATED PRPS1 WILD-TYPE 
              9             480 
[1] "BIRC3 MUTATION ANALYSIS"
[1] 3
  BIRC3 MUTATED BIRC3 WILD-TYPE 
             15             474 
  BIRC3 MUTATED BIRC3 WILD-TYPE 
             15             474 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
            21            468 
  IDH1 MUTATED IDH1 WILD-TYPE 
            21            468 
[1] "ZNF486 MUTATION ANALYSIS"
[1] 3
  ZNF486 MUTATED ZNF486 WILD-TYPE 
              13              476 
  ZNF486 MUTATED ZNF486 WILD-TYPE 
              13              476 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
          156           333 
  ATM MUTATED ATM WILD-TYPE 
          156           333 
[1] "HIST1H1T MUTATION ANALYSIS"
[1] 3
  HIST1H1T MUTATED HIST1H1T WILD-TYPE 
                10                479 
  HIST1H1T MUTATED HIST1H1T WILD-TYPE 
                10                479 
[1] "CREBBP MUTATION ANALYSIS"
[1] 3
  CREBBP MUTATED CREBBP WILD-TYPE 
              70              419 
  CREBBP MUTATED CREBBP WILD-TYPE 
              70              419 
[1] "GMNN MUTATION ANALYSIS"
[1] 3
  GMNN MUTATED GMNN WILD-TYPE 
             5            484 
  GMNN MUTATED GMNN WILD-TYPE 
             5            484 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              93              396 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              93              396 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             28             461 
  KDM6A MUTATED KDM6A WILD-TYPE 
             28             461 
[1] "CLSPN MUTATION ANALYSIS"
[1] 3
  CLSPN MUTATED CLSPN WILD-TYPE 
             34             455 
  CLSPN MUTATED CLSPN WILD-TYPE 
             34             455 
[1] "FRMPD4 MUTATION ANALYSIS"
[1] 3
  FRMPD4 MUTATED FRMPD4 WILD-TYPE 
              36              453 
  FRMPD4 MUTATED FRMPD4 WILD-TYPE 
              36              453 
[1] "SAPS2 MUTATION ANALYSIS"
[1] 3
  SAPS2 MUTATED SAPS2 WILD-TYPE 
             13             476 
  SAPS2 MUTATED SAPS2 WILD-TYPE 
             13             476 
[1] "MYST4 MUTATION ANALYSIS"
[1] 3
  MYST4 MUTATED MYST4 WILD-TYPE 
             30             459 
  MYST4 MUTATED MYST4 WILD-TYPE 
             30             459 
[1] "PRPH2 MUTATION ANALYSIS"
[1] 3
  PRPH2 MUTATED PRPH2 WILD-TYPE 
             13             476 
  PRPH2 MUTATED PRPH2 WILD-TYPE 
             13             476 
[1] "RBMX MUTATION ANALYSIS"
[1] 3
  RBMX MUTATED RBMX WILD-TYPE 
            20            469 
  RBMX MUTATED RBMX WILD-TYPE 
            20            469 
[1] "LDHA MUTATION ANALYSIS"
[1] 3
  LDHA MUTATED LDHA WILD-TYPE 
            14            475 
  LDHA MUTATED LDHA WILD-TYPE 
            14            475 
[1] "GFI1 MUTATION ANALYSIS"
[1] 3
  GFI1 MUTATED GFI1 WILD-TYPE 
            11            478 
  GFI1 MUTATED GFI1 WILD-TYPE 
            11            478 
[1] "SLC9A10 MUTATION ANALYSIS"
[1] 3
  SLC9A10 MUTATED SLC9A10 WILD-TYPE 
               23               466 
  SLC9A10 MUTATED SLC9A10 WILD-TYPE 
               23               466 
[1] "OXSM MUTATION ANALYSIS"
[1] 3
  OXSM MUTATED OXSM WILD-TYPE 
            14            475 
  OXSM MUTATED OXSM WILD-TYPE 
            14            475 
[1] "NTAN1 MUTATION ANALYSIS"
[1] 3
  NTAN1 MUTATED NTAN1 WILD-TYPE 
             10             479 
  NTAN1 MUTATED NTAN1 WILD-TYPE 
             10             479 
[1] "ICAM5 MUTATION ANALYSIS"
[1] 3
  ICAM5 MUTATED ICAM5 WILD-TYPE 
             15             474 
  ICAM5 MUTATED ICAM5 WILD-TYPE 
             15             474 
[1] "KCTD3 MUTATION ANALYSIS"
[1] 3
  KCTD3 MUTATED KCTD3 WILD-TYPE 
             19             470 
  KCTD3 MUTATED KCTD3 WILD-TYPE 
             19             470 
[1] "RBM44 MUTATION ANALYSIS"
[1] 3
  RBM44 MUTATED RBM44 WILD-TYPE 
             15             474 
  RBM44 MUTATED RBM44 WILD-TYPE 
             15             474 
[1] "KIAA1586 MUTATION ANALYSIS"
[1] 3
  KIAA1586 MUTATED KIAA1586 WILD-TYPE 
                13                476 
  KIAA1586 MUTATED KIAA1586 WILD-TYPE 
                13                476 
[1] "CDX2 MUTATION ANALYSIS"
[1] 3
  CDX2 MUTATED CDX2 WILD-TYPE 
             6            483 
  CDX2 MUTATED CDX2 WILD-TYPE 
             6            483 
[1] "EXD2 MUTATION ANALYSIS"
[1] 3
  EXD2 MUTATED EXD2 WILD-TYPE 
            13            476 
  EXD2 MUTATED EXD2 WILD-TYPE 
            13            476 
[1] "CLEC4F MUTATION ANALYSIS"
[1] 3
  CLEC4F MUTATED CLEC4F WILD-TYPE 
              20              469 
  CLEC4F MUTATED CLEC4F WILD-TYPE 
              20              469 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
              10              479 
  GPR174 MUTATED GPR174 WILD-TYPE 
              10              479 
[1] "NAA25 MUTATION ANALYSIS"
[1] 3
  NAA25 MUTATED NAA25 WILD-TYPE 
             18             471 
  NAA25 MUTATED NAA25 WILD-TYPE 
             18             471 
[1] "FIGNL1 MUTATION ANALYSIS"
[1] 3
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
              19              470 
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
              19              470 
[1] "HMG20A MUTATION ANALYSIS"
[1] 3
  HMG20A MUTATED HMG20A WILD-TYPE 
              15              474 
  HMG20A MUTATED HMG20A WILD-TYPE 
              15              474 
[1] "SHROOM4 MUTATION ANALYSIS"
[1] 3
  SHROOM4 MUTATED SHROOM4 WILD-TYPE 
               28               461 
  SHROOM4 MUTATED SHROOM4 WILD-TYPE 
               28               461 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             18             471 
  CASP8 MUTATED CASP8 WILD-TYPE 
             18             471 
[1] "HPS3 MUTATION ANALYSIS"
[1] 3
  HPS3 MUTATED HPS3 WILD-TYPE 
            23            466 
  HPS3 MUTATED HPS3 WILD-TYPE 
            23            466 
[1] "GLI1 MUTATION ANALYSIS"
[1] 3
  GLI1 MUTATED GLI1 WILD-TYPE 
            21            468 
  GLI1 MUTATED GLI1 WILD-TYPE 
            21            468 
[1] "PDCD5 MUTATION ANALYSIS"
[1] 3
  PDCD5 MUTATED PDCD5 WILD-TYPE 
             11             478 
  PDCD5 MUTATED PDCD5 WILD-TYPE 
             11             478 
[1] "BCL9L MUTATION ANALYSIS"
[1] 3
  BCL9L MUTATED BCL9L WILD-TYPE 
             25             464 
  BCL9L MUTATED BCL9L WILD-TYPE 
             25             464 
[1] "TPM4 MUTATION ANALYSIS"
[1] 3
  TPM4 MUTATED TPM4 WILD-TYPE 
             9            480 
  TPM4 MUTATED TPM4 WILD-TYPE 
             9            480 
[1] "CYLD MUTATION ANALYSIS"
[1] 3
  CYLD MUTATED CYLD WILD-TYPE 
            27            462 
  CYLD MUTATED CYLD WILD-TYPE 
            27            462 
[1] "AMOT MUTATION ANALYSIS"
[1] 3
  AMOT MUTATED AMOT WILD-TYPE 
            16            473 
  AMOT MUTATED AMOT WILD-TYPE 
            16            473 
[1] "GNPAT MUTATION ANALYSIS"
[1] 3
  GNPAT MUTATED GNPAT WILD-TYPE 
             19             470 
  GNPAT MUTATED GNPAT WILD-TYPE 
             19             470 
[1] "PRKAA2 MUTATION ANALYSIS"
[1] 3
  PRKAA2 MUTATED PRKAA2 WILD-TYPE 
              16              473 
  PRKAA2 MUTATED PRKAA2 WILD-TYPE 
              16              473 
[1] "TMEM126A MUTATION ANALYSIS"
[1] 3
  TMEM126A MUTATED TMEM126A WILD-TYPE 
                 7                482 
  TMEM126A MUTATED TMEM126A WILD-TYPE 
                 7                482 
[1] "OSBPL11 MUTATION ANALYSIS"
[1] 3
  OSBPL11 MUTATED OSBPL11 WILD-TYPE 
               19               470 
  OSBPL11 MUTATED OSBPL11 WILD-TYPE 
               19               470 
[1] "MLLT6 MUTATION ANALYSIS"
[1] 3
  MLLT6 MUTATED MLLT6 WILD-TYPE 
             17             472 
  MLLT6 MUTATED MLLT6 WILD-TYPE 
             17             472 
[1] "USP24 MUTATION ANALYSIS"
[1] 3
  USP24 MUTATED USP24 WILD-TYPE 
             34             455 
  USP24 MUTATED USP24 WILD-TYPE 
             34             455 
[1] "ARFGEF1 MUTATION ANALYSIS"
[1] 3
  ARFGEF1 MUTATED ARFGEF1 WILD-TYPE 
               37               452 
  ARFGEF1 MUTATED ARFGEF1 WILD-TYPE 
               37               452 
[1] "OR5V1 MUTATION ANALYSIS"
[1] 3
  OR5V1 MUTATED OR5V1 WILD-TYPE 
             18             471 
  OR5V1 MUTATED OR5V1 WILD-TYPE 
             18             471 
[1] "PRB4 MUTATION ANALYSIS"
[1] 3
  PRB4 MUTATED PRB4 WILD-TYPE 
            12            477 
  PRB4 MUTATED PRB4 WILD-TYPE 
            12            477 
[1] "TRIP11 MUTATION ANALYSIS"
[1] 3
  TRIP11 MUTATED TRIP11 WILD-TYPE 
              26              463 
  TRIP11 MUTATED TRIP11 WILD-TYPE 
              26              463 
[1] "SLK MUTATION ANALYSIS"
[1] 3
  SLK MUTATED SLK WILD-TYPE 
           25           464 
  SLK MUTATED SLK WILD-TYPE 
           25           464 
[1] "PON3 MUTATION ANALYSIS"
[1] 3
  PON3 MUTATED PON3 WILD-TYPE 
            14            475 
  PON3 MUTATED PON3 WILD-TYPE 
            14            475 
[1] "SLAMF7 MUTATION ANALYSIS"
[1] 3
  SLAMF7 MUTATED SLAMF7 WILD-TYPE 
              11              478 
  SLAMF7 MUTATED SLAMF7 WILD-TYPE 
              11              478 
[1] "ATG5 MUTATION ANALYSIS"
[1] 3
  ATG5 MUTATED ATG5 WILD-TYPE 
             9            480 
  ATG5 MUTATED ATG5 WILD-TYPE 
             9            480 
[1] "SCAI MUTATION ANALYSIS"
[1] 3
  SCAI MUTATED SCAI WILD-TYPE 
            15            474 
  SCAI MUTATED SCAI WILD-TYPE 
            15            474 
[1] "TAF7L MUTATION ANALYSIS"
[1] 3
  TAF7L MUTATED TAF7L WILD-TYPE 
             13             476 
  TAF7L MUTATED TAF7L WILD-TYPE 
             13             476 
[1] "ECT2 MUTATION ANALYSIS"
[1] 3
  ECT2 MUTATED ECT2 WILD-TYPE 
            19            470 
  ECT2 MUTATED ECT2 WILD-TYPE 
            19            470 
[1] "DUSP1 MUTATION ANALYSIS"
[1] 3
  DUSP1 MUTATED DUSP1 WILD-TYPE 
              7             482 
  DUSP1 MUTATED DUSP1 WILD-TYPE 
              7             482 
[1] "ZFX MUTATION ANALYSIS"
[1] 3
  ZFX MUTATED ZFX WILD-TYPE 
           14           475 
  ZFX MUTATED ZFX WILD-TYPE 
           14           475 
[1] "ATP11B MUTATION ANALYSIS"
[1] 3
  ATP11B MUTATED ATP11B WILD-TYPE 
              19              470 
  ATP11B MUTATED ATP11B WILD-TYPE 
              19              470 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
            14            475 
  NEFH MUTATED NEFH WILD-TYPE 
            14            475 
[1] "ECM2 MUTATION ANALYSIS"
[1] 3
  ECM2 MUTATED ECM2 WILD-TYPE 
            20            469 
  ECM2 MUTATED ECM2 WILD-TYPE 
            20            469 
[1] "CHD3 MUTATION ANALYSIS"
[1] 3
  CHD3 MUTATED CHD3 WILD-TYPE 
            25            464 
  CHD3 MUTATED CHD3 WILD-TYPE 
            25            464 
[1] "KLK10 MUTATION ANALYSIS"
[1] 3
  KLK10 MUTATED KLK10 WILD-TYPE 
              8             481 
  KLK10 MUTATED KLK10 WILD-TYPE 
              8             481 
[1] "DST MUTATION ANALYSIS"
[1] 3
  DST MUTATED DST WILD-TYPE 
           77           412 
  DST MUTATED DST WILD-TYPE 
           77           412 
[1] "NEUROD1 MUTATION ANALYSIS"
[1] 3
  NEUROD1 MUTATED NEUROD1 WILD-TYPE 
               10               479 
  NEUROD1 MUTATED NEUROD1 WILD-TYPE 
               10               479 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                26                463 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                26                463 
[1] "PIK3IP1 MUTATION ANALYSIS"
[1] 3
  PIK3IP1 MUTATED PIK3IP1 WILD-TYPE 
                9               480 
  PIK3IP1 MUTATED PIK3IP1 WILD-TYPE 
                9               480 
[1] "C10ORF79 MUTATION ANALYSIS"
[1] 3
  C10ORF79 MUTATED C10ORF79 WILD-TYPE 
                32                457 
  C10ORF79 MUTATED C10ORF79 WILD-TYPE 
                32                457 
[1] "KRT2 MUTATION ANALYSIS"
[1] 3
  KRT2 MUTATED KRT2 WILD-TYPE 
            15            474 
  KRT2 MUTATED KRT2 WILD-TYPE 
            15            474 
[1] "HTR2A MUTATION ANALYSIS"
[1] 3
  HTR2A MUTATED HTR2A WILD-TYPE 
             23             466 
  HTR2A MUTATED HTR2A WILD-TYPE 
             23             466 
[1] "PTK2 MUTATION ANALYSIS"
[1] 3
  PTK2 MUTATED PTK2 WILD-TYPE 
            21            468 
  PTK2 MUTATED PTK2 WILD-TYPE 
            21            468 
[1] "AXIN2 MUTATION ANALYSIS"
[1] 3
  AXIN2 MUTATED AXIN2 WILD-TYPE 
             24             465 
  AXIN2 MUTATED AXIN2 WILD-TYPE 
             24             465 
[1] "TM9SF2 MUTATION ANALYSIS"
[1] 3
  TM9SF2 MUTATED TM9SF2 WILD-TYPE 
              11              478 
  TM9SF2 MUTATED TM9SF2 WILD-TYPE 
              11              478 
[1] "FAHD2A MUTATION ANALYSIS"
[1] 3
  FAHD2A MUTATED FAHD2A WILD-TYPE 
               7              482 
  FAHD2A MUTATED FAHD2A WILD-TYPE 
               7              482 
[1] "KCNK1 MUTATION ANALYSIS"
[1] 3
  KCNK1 MUTATED KCNK1 WILD-TYPE 
             11             478 
  KCNK1 MUTATED KCNK1 WILD-TYPE 
             11             478 
[1] "C15ORF52 MUTATION ANALYSIS"
[1] 3
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                12                477 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                12                477 
[1] "HAUS6 MUTATION ANALYSIS"
[1] 3
  HAUS6 MUTATED HAUS6 WILD-TYPE 
             17             472 
  HAUS6 MUTATED HAUS6 WILD-TYPE 
             17             472 
[1] "TUBA4A MUTATION ANALYSIS"
[1] 3
  TUBA4A MUTATED TUBA4A WILD-TYPE 
              12              477 
  TUBA4A MUTATED TUBA4A WILD-TYPE 
              12              477 
[1] "MBD6 MUTATION ANALYSIS"
[1] 3
  MBD6 MUTATED MBD6 WILD-TYPE 
            16            473 
  MBD6 MUTATED MBD6 WILD-TYPE 
            16            473 
[1] "TFE3 MUTATION ANALYSIS"
[1] 3
  TFE3 MUTATED TFE3 WILD-TYPE 
            11            478 
  TFE3 MUTATED TFE3 WILD-TYPE 
            11            478 
[1] "NCAPD2 MUTATION ANALYSIS"
[1] 3
  NCAPD2 MUTATED NCAPD2 WILD-TYPE 
              21              468 
  NCAPD2 MUTATED NCAPD2 WILD-TYPE 
              21              468 
[1] "NCOA6 MUTATION ANALYSIS"
[1] 3
  NCOA6 MUTATED NCOA6 WILD-TYPE 
             29             460 
  NCOA6 MUTATED NCOA6 WILD-TYPE 
             29             460 
[1] "SVIL MUTATION ANALYSIS"
[1] 3
  SVIL MUTATED SVIL WILD-TYPE 
            34            455 
  SVIL MUTATED SVIL WILD-TYPE 
            34            455 
[1] "XYLT2 MUTATION ANALYSIS"
[1] 3
  XYLT2 MUTATED XYLT2 WILD-TYPE 
             14             475 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
             14             475 
[1] "ZNF789 MUTATION ANALYSIS"
[1] 3
  ZNF789 MUTATED ZNF789 WILD-TYPE 
               7              482 
  ZNF789 MUTATED ZNF789 WILD-TYPE 
               7              482 
[1] "DDX43 MUTATION ANALYSIS"
[1] 3
  DDX43 MUTATED DDX43 WILD-TYPE 
             14             475 
  DDX43 MUTATED DDX43 WILD-TYPE 
             14             475 
[1] "CEP135 MUTATION ANALYSIS"
[1] 3
  CEP135 MUTATED CEP135 WILD-TYPE 
              25              464 
  CEP135 MUTATED CEP135 WILD-TYPE 
              25              464 
[1] "IL12RB2 MUTATION ANALYSIS"
[1] 3
  IL12RB2 MUTATED IL12RB2 WILD-TYPE 
               19               470 
  IL12RB2 MUTATED IL12RB2 WILD-TYPE 
               19               470 
[1] "EHBP1 MUTATION ANALYSIS"
[1] 3
  EHBP1 MUTATED EHBP1 WILD-TYPE 
             25             464 
  EHBP1 MUTATED EHBP1 WILD-TYPE 
             25             464 
[1] "USP7 MUTATION ANALYSIS"
[1] 3
  USP7 MUTATED USP7 WILD-TYPE 
            26            463 
  USP7 MUTATED USP7 WILD-TYPE 
            26            463 
[1] "IVL MUTATION ANALYSIS"
[1] 3
  IVL MUTATED IVL WILD-TYPE 
           20           469 
  IVL MUTATED IVL WILD-TYPE 
           20           469 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
            18            471 
  IDH2 MUTATED IDH2 WILD-TYPE 
            18            471 
[1] "FGFR2 MUTATION ANALYSIS"
[1] 3
  FGFR2 MUTATED FGFR2 WILD-TYPE 
             53             436 
  FGFR2 MUTATED FGFR2 WILD-TYPE 
             53             436 
[1] "FAM134A MUTATION ANALYSIS"
[1] 3
  FAM134A MUTATED FAM134A WILD-TYPE 
                8               481 
  FAM134A MUTATED FAM134A WILD-TYPE 
                8               481 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            59            430 
  MLL2 MUTATED MLL2 WILD-TYPE 
            59            430 
[1] "LRRC39 MUTATION ANALYSIS"
[1] 3
  LRRC39 MUTATED LRRC39 WILD-TYPE 
               9              480 
  LRRC39 MUTATED LRRC39 WILD-TYPE 
               9              480 
[1] "ST8SIA6 MUTATION ANALYSIS"
[1] 3
  ST8SIA6 MUTATED ST8SIA6 WILD-TYPE 
               14               475 
  ST8SIA6 MUTATED ST8SIA6 WILD-TYPE 
               14               475 
[1] "CAB39L MUTATION ANALYSIS"
[1] 3
  CAB39L MUTATED CAB39L WILD-TYPE 
              10              479 
  CAB39L MUTATED CAB39L WILD-TYPE 
              10              479 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             59             430 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             59             430 
[1] "UGT3A2 MUTATION ANALYSIS"
[1] 3
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              22              467 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              22              467 
[1] "ARHGAP5 MUTATION ANALYSIS"
[1] 3
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
               23               466 
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
               23               466 
[1] "EP400 MUTATION ANALYSIS"
[1] 3
  EP400 MUTATED EP400 WILD-TYPE 
             40             449 
  EP400 MUTATED EP400 WILD-TYPE 
             40             449 
[1] "MEN1 MUTATION ANALYSIS"
[1] 3
  MEN1 MUTATED MEN1 WILD-TYPE 
            27            462 
  MEN1 MUTATED MEN1 WILD-TYPE 
            27            462 
[1] "SENP6 MUTATION ANALYSIS"
[1] 3
  SENP6 MUTATED SENP6 WILD-TYPE 
             18             471 
  SENP6 MUTATED SENP6 WILD-TYPE 
             18             471 
[1] "OR7C2 MUTATION ANALYSIS"
[1] 3
  OR7C2 MUTATED OR7C2 WILD-TYPE 
             12             477 
  OR7C2 MUTATED OR7C2 WILD-TYPE 
             12             477 
[1] "PDGFRA MUTATION ANALYSIS"
[1] 3
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              54              435 
  PDGFRA MUTATED PDGFRA WILD-TYPE 
              54              435 
[1] "KLC4 MUTATION ANALYSIS"
[1] 3
  KLC4 MUTATED KLC4 WILD-TYPE 
            17            472 
  KLC4 MUTATED KLC4 WILD-TYPE 
            17            472 
[1] "INTS4 MUTATION ANALYSIS"
[1] 3
  INTS4 MUTATED INTS4 WILD-TYPE 
             22             467 
  INTS4 MUTATED INTS4 WILD-TYPE 
             22             467 
[1] "RBAK MUTATION ANALYSIS"
[1] 3
  RBAK MUTATED RBAK WILD-TYPE 
            18            471 
  RBAK MUTATED RBAK WILD-TYPE 
            18            471 
[1] "EIF4A2 MUTATION ANALYSIS"
[1] 3
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
              12              477 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
              12              477 
[1] "FAM133B MUTATION ANALYSIS"
[1] 3
  FAM133B MUTATED FAM133B WILD-TYPE 
                5               484 
  FAM133B MUTATED FAM133B WILD-TYPE 
                5               484 
[1] "CATSPER1 MUTATION ANALYSIS"
[1] 3
  CATSPER1 MUTATED CATSPER1 WILD-TYPE 
                19                470 
  CATSPER1 MUTATED CATSPER1 WILD-TYPE 
                19                470 
[1] "GIGYF2 MUTATION ANALYSIS"
[1] 3
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
              30              459 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
              30              459 
[1] "RBM12 MUTATION ANALYSIS"
[1] 3
  RBM12 MUTATED RBM12 WILD-TYPE 
             15             474 
  RBM12 MUTATED RBM12 WILD-TYPE 
             15             474 
[1] "EIF2AK4 MUTATION ANALYSIS"
[1] 3
  EIF2AK4 MUTATED EIF2AK4 WILD-TYPE 
               20               469 
  EIF2AK4 MUTATED EIF2AK4 WILD-TYPE 
               20               469 
[1] "PI4K2B MUTATION ANALYSIS"
[1] 3
  PI4K2B MUTATED PI4K2B WILD-TYPE 
              14              475 
  PI4K2B MUTATED PI4K2B WILD-TYPE 
              14              475 
[1] "HIPK2 MUTATION ANALYSIS"
[1] 3
  HIPK2 MUTATED HIPK2 WILD-TYPE 
             26             463 
  HIPK2 MUTATED HIPK2 WILD-TYPE 
             26             463 
[1] "SLC4A10 MUTATION ANALYSIS"
[1] 3
  SLC4A10 MUTATED SLC4A10 WILD-TYPE 
               29               460 
  SLC4A10 MUTATED SLC4A10 WILD-TYPE 
               29               460 
[1] "KLHL10 MUTATION ANALYSIS"
[1] 3
  KLHL10 MUTATED KLHL10 WILD-TYPE 
              21              468 
  KLHL10 MUTATED KLHL10 WILD-TYPE 
              21              468 
[1] "LINGO4 MUTATION ANALYSIS"
[1] 3
  LINGO4 MUTATED LINGO4 WILD-TYPE 
              10              479 
  LINGO4 MUTATED LINGO4 WILD-TYPE 
              10              479 
[1] "MMP13 MUTATION ANALYSIS"
[1] 3
  MMP13 MUTATED MMP13 WILD-TYPE 
             16             473 
  MMP13 MUTATED MMP13 WILD-TYPE 
             16             473 
[1] "DNAH12 MUTATION ANALYSIS"
[1] 3
  DNAH12 MUTATED DNAH12 WILD-TYPE 
              25              464 
  DNAH12 MUTATED DNAH12 WILD-TYPE 
              25              464 
[1] "UQCRC2 MUTATION ANALYSIS"
[1] 3
  UQCRC2 MUTATED UQCRC2 WILD-TYPE 
              10              479 
  UQCRC2 MUTATED UQCRC2 WILD-TYPE 
              10              479 
[1] "E2F7 MUTATION ANALYSIS"
[1] 3
  E2F7 MUTATED E2F7 WILD-TYPE 
            26            463 
  E2F7 MUTATED E2F7 WILD-TYPE 
            26            463 
[1] "FHOD3 MUTATION ANALYSIS"
[1] 3
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             30             459 
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             30             459 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            66            423 
  MLL3 MUTATED MLL3 WILD-TYPE 
            66            423 
[1] "SCD5 MUTATION ANALYSIS"
[1] 3
  SCD5 MUTATED SCD5 WILD-TYPE 
             8            481 
  SCD5 MUTATED SCD5 WILD-TYPE 
             8            481 
[1] "DDX23 MUTATION ANALYSIS"
[1] 3
  DDX23 MUTATED DDX23 WILD-TYPE 
             21             468 
  DDX23 MUTATED DDX23 WILD-TYPE 
             21             468 
[1] "THOC5 MUTATION ANALYSIS"
[1] 3
  THOC5 MUTATED THOC5 WILD-TYPE 
             16             473 
  THOC5 MUTATED THOC5 WILD-TYPE 
             16             473 
[1] "ADAM28 MUTATION ANALYSIS"
[1] 3
  ADAM28 MUTATED ADAM28 WILD-TYPE 
              20              469 
  ADAM28 MUTATED ADAM28 WILD-TYPE 
              20              469 
[1] "SMAD3 MUTATION ANALYSIS"
[1] 3
  SMAD3 MUTATED SMAD3 WILD-TYPE 
             19             470 
  SMAD3 MUTATED SMAD3 WILD-TYPE 
             19             470 
[1] "SGK269 MUTATION ANALYSIS"
[1] 3
  SGK269 MUTATED SGK269 WILD-TYPE 
              23              466 
  SGK269 MUTATED SGK269 WILD-TYPE 
              23              466 
[1] "FLT3 MUTATION ANALYSIS"
[1] 3
  FLT3 MUTATED FLT3 WILD-TYPE 
            32            457 
  FLT3 MUTATED FLT3 WILD-TYPE 
            32            457 
[1] "RNF128 MUTATION ANALYSIS"
[1] 3
  RNF128 MUTATED RNF128 WILD-TYPE 
              15              474 
  RNF128 MUTATED RNF128 WILD-TYPE 
              15              474 
[1] "MOBKL2B MUTATION ANALYSIS"
[1] 3
  MOBKL2B MUTATED MOBKL2B WILD-TYPE 
                9               480 
  MOBKL2B MUTATED MOBKL2B WILD-TYPE 
                9               480 
[1] "NT5DC3 MUTATION ANALYSIS"
[1] 3
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
              14              475 
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
              14              475 
[1] "USP29 MUTATION ANALYSIS"
[1] 3
  USP29 MUTATED USP29 WILD-TYPE 
             22             467 
  USP29 MUTATED USP29 WILD-TYPE 
             22             467 
[1] "USP34 MUTATION ANALYSIS"
[1] 3
  USP34 MUTATED USP34 WILD-TYPE 
             47             442 
  USP34 MUTATED USP34 WILD-TYPE 
             47             442 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
          41          448 
  F8 MUTATED F8 WILD-TYPE 
          41          448 
[1] "SMTN MUTATION ANALYSIS"
[1] 3
  SMTN MUTATED SMTN WILD-TYPE 
            16            473 
  SMTN MUTATED SMTN WILD-TYPE 
            16            473 
[1] "CARD11 MUTATION ANALYSIS"
[1] 3
  CARD11 MUTATED CARD11 WILD-TYPE 
              49              440 
  CARD11 MUTATED CARD11 WILD-TYPE 
              49              440 
[1] "NUP188 MUTATION ANALYSIS"
[1] 3
  NUP188 MUTATED NUP188 WILD-TYPE 
              23              466 
  NUP188 MUTATED NUP188 WILD-TYPE 
              23              466 
[1] "PTPN3 MUTATION ANALYSIS"
[1] 3
  PTPN3 MUTATED PTPN3 WILD-TYPE 
             16             473 
  PTPN3 MUTATED PTPN3 WILD-TYPE 
             16             473 
[1] "NBEA MUTATION ANALYSIS"
[1] 3
  NBEA MUTATED NBEA WILD-TYPE 
            53            436 
  NBEA MUTATED NBEA WILD-TYPE 
            53            436 
[1] "CNIH4 MUTATION ANALYSIS"
[1] 3
  CNIH4 MUTATED CNIH4 WILD-TYPE 
              6             483 
  CNIH4 MUTATED CNIH4 WILD-TYPE 
              6             483 
[1] "CD58 MUTATION ANALYSIS"
[1] 3
  CD58 MUTATED CD58 WILD-TYPE 
            15            474 
  CD58 MUTATED CD58 WILD-TYPE 
            15            474 
[1] "GMCL1 MUTATION ANALYSIS"
[1] 3
  GMCL1 MUTATED GMCL1 WILD-TYPE 
             14             475 
  GMCL1 MUTATED GMCL1 WILD-TYPE 
             14             475 
[1] "AKAP3 MUTATION ANALYSIS"
[1] 3
  AKAP3 MUTATED AKAP3 WILD-TYPE 
             23             466 
  AKAP3 MUTATED AKAP3 WILD-TYPE 
             23             466 
[1] "RBMX2 MUTATION ANALYSIS"
[1] 3
  RBMX2 MUTATED RBMX2 WILD-TYPE 
             12             477 
  RBMX2 MUTATED RBMX2 WILD-TYPE 
             12             477 
[1] "DCBLD1 MUTATION ANALYSIS"
[1] 3
  DCBLD1 MUTATED DCBLD1 WILD-TYPE 
               7              482 
  DCBLD1 MUTATED DCBLD1 WILD-TYPE 
               7              482 
[1] "ZNF280B MUTATION ANALYSIS"
[1] 3
  ZNF280B MUTATED ZNF280B WILD-TYPE 
               13               476 
  ZNF280B MUTATED ZNF280B WILD-TYPE 
               13               476 
[1] "NCOA7 MUTATION ANALYSIS"
[1] 3
  NCOA7 MUTATED NCOA7 WILD-TYPE 
             17             472 
  NCOA7 MUTATED NCOA7 WILD-TYPE 
             17             472 
[1] "DENND4A MUTATION ANALYSIS"
[1] 3
  DENND4A MUTATED DENND4A WILD-TYPE 
               26               463 
  DENND4A MUTATED DENND4A WILD-TYPE 
               26               463 
[1] "ALDH2 MUTATION ANALYSIS"
[1] 3
  ALDH2 MUTATED ALDH2 WILD-TYPE 
             12             477 
  ALDH2 MUTATED ALDH2 WILD-TYPE 
             12             477 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
               11               478 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
               11               478 
[1] "EFTUD2 MUTATION ANALYSIS"
[1] 3
  EFTUD2 MUTATED EFTUD2 WILD-TYPE 
              17              472 
  EFTUD2 MUTATED EFTUD2 WILD-TYPE 
              17              472 
[1] "STBD1 MUTATION ANALYSIS"
[1] 3
  STBD1 MUTATED STBD1 WILD-TYPE 
              7             482 
  STBD1 MUTATED STBD1 WILD-TYPE 
              7             482 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              35              454 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              35              454 
[1] "C17ORF47 MUTATION ANALYSIS"
[1] 3
  C17ORF47 MUTATED C17ORF47 WILD-TYPE 
                 7                482 
  C17ORF47 MUTATED C17ORF47 WILD-TYPE 
                 7                482 
[1] "TOP2A MUTATION ANALYSIS"
[1] 3
  TOP2A MUTATED TOP2A WILD-TYPE 
             20             469 
  TOP2A MUTATED TOP2A WILD-TYPE 
             20             469 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             14             475 
  MIER3 MUTATED MIER3 WILD-TYPE 
             14             475 
[1] "FBXO21 MUTATION ANALYSIS"
[1] 3
  FBXO21 MUTATED FBXO21 WILD-TYPE 
               9              480 
  FBXO21 MUTATED FBXO21 WILD-TYPE 
               9              480 
[1] "CYP1B1 MUTATION ANALYSIS"
[1] 3
  CYP1B1 MUTATED CYP1B1 WILD-TYPE 
              12              477 
  CYP1B1 MUTATED CYP1B1 WILD-TYPE 
              12              477 
[1] "MSH6 MUTATION ANALYSIS"
[1] 3
  MSH6 MUTATED MSH6 WILD-TYPE 
            45            444 
  MSH6 MUTATED MSH6 WILD-TYPE 
            45            444 
[1] "MMP8 MUTATION ANALYSIS"
[1] 3
  MMP8 MUTATED MMP8 WILD-TYPE 
            13            476 
  MMP8 MUTATED MMP8 WILD-TYPE 
            13            476 
[1] "RAG1AP1 MUTATION ANALYSIS"
[1] 3
  RAG1AP1 MUTATED RAG1AP1 WILD-TYPE 
                6               483 
  RAG1AP1 MUTATED RAG1AP1 WILD-TYPE 
                6               483 
[1] "ALX4 MUTATION ANALYSIS"
[1] 3
  ALX4 MUTATED ALX4 WILD-TYPE 
            12            477 
  ALX4 MUTATED ALX4 WILD-TYPE 
            12            477 
[1] "OR51E1 MUTATION ANALYSIS"
[1] 3
  OR51E1 MUTATED OR51E1 WILD-TYPE 
              15              474 
  OR51E1 MUTATED OR51E1 WILD-TYPE 
              15              474 
[1] "CBL MUTATION ANALYSIS"
[1] 3
  CBL MUTATED CBL WILD-TYPE 
           39           450 
  CBL MUTATED CBL WILD-TYPE 
           39           450 
[1] "SLC28A2 MUTATION ANALYSIS"
[1] 3
  SLC28A2 MUTATED SLC28A2 WILD-TYPE 
               15               474 
  SLC28A2 MUTATED SLC28A2 WILD-TYPE 
               15               474 
[1] "ZNF222 MUTATION ANALYSIS"
[1] 3
  ZNF222 MUTATED ZNF222 WILD-TYPE 
              11              478 
  ZNF222 MUTATED ZNF222 WILD-TYPE 
              11              478 
[1] "UBQLN2 MUTATION ANALYSIS"
[1] 3
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
              12              477 
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
              12              477 
[1] "PPARGC1A MUTATION ANALYSIS"
[1] 3
  PPARGC1A MUTATED PPARGC1A WILD-TYPE 
                23                466 
  PPARGC1A MUTATED PPARGC1A WILD-TYPE 
                23                466 
[1] "ATP6V1B1 MUTATION ANALYSIS"
[1] 3
  ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE 
                16                473 
  ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE 
                16                473 
[1] "ZNF583 MUTATION ANALYSIS"
[1] 3
  ZNF583 MUTATED ZNF583 WILD-TYPE 
              18              471 
  ZNF583 MUTATED ZNF583 WILD-TYPE 
              18              471 
[1] "OSBPL2 MUTATION ANALYSIS"
[1] 3
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
              12              477 
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
              12              477 
[1] "CRY1 MUTATION ANALYSIS"
[1] 3
  CRY1 MUTATED CRY1 WILD-TYPE 
            16            473 
  CRY1 MUTATED CRY1 WILD-TYPE 
            16            473 
[1] "ZFYVE26 MUTATION ANALYSIS"
[1] 3
  ZFYVE26 MUTATED ZFYVE26 WILD-TYPE 
               32               457 
  ZFYVE26 MUTATED ZFYVE26 WILD-TYPE 
               32               457 
[1] "PALB2 MUTATION ANALYSIS"
[1] 3
  PALB2 MUTATED PALB2 WILD-TYPE 
             20             469 
  PALB2 MUTATED PALB2 WILD-TYPE 
             20             469 
[1] "PKD2L1 MUTATION ANALYSIS"
[1] 3
  PKD2L1 MUTATED PKD2L1 WILD-TYPE 
              24              465 
  PKD2L1 MUTATED PKD2L1 WILD-TYPE 
              24              465 
[1] "COLEC10 MUTATION ANALYSIS"
[1] 3
  COLEC10 MUTATED COLEC10 WILD-TYPE 
               10               479 
  COLEC10 MUTATED COLEC10 WILD-TYPE 
               10               479 
[1] "C2ORF77 MUTATION ANALYSIS"
[1] 3
  C2ORF77 MUTATED C2ORF77 WILD-TYPE 
                9               480 
  C2ORF77 MUTATED C2ORF77 WILD-TYPE 
                9               480 
[1] "DHRS7 MUTATION ANALYSIS"
[1] 3
  DHRS7 MUTATED DHRS7 WILD-TYPE 
             10             479 
  DHRS7 MUTATED DHRS7 WILD-TYPE 
             10             479 
[1] "PANK3 MUTATION ANALYSIS"
[1] 3
  PANK3 MUTATED PANK3 WILD-TYPE 
              7             482 
  PANK3 MUTATED PANK3 WILD-TYPE 
              7             482 
[1] "G3BP2 MUTATION ANALYSIS"
[1] 3
  G3BP2 MUTATED G3BP2 WILD-TYPE 
             10             479 
  G3BP2 MUTATED G3BP2 WILD-TYPE 
             10             479 
[1] "TET3 MUTATION ANALYSIS"
[1] 3
  TET3 MUTATED TET3 WILD-TYPE 
            24            465 
  TET3 MUTATED TET3 WILD-TYPE 
            24            465 
[1] "C12ORF5 MUTATION ANALYSIS"
[1] 3
  C12ORF5 MUTATED C12ORF5 WILD-TYPE 
                6               483 
  C12ORF5 MUTATED C12ORF5 WILD-TYPE 
                6               483 
[1] "GPR98 MUTATION ANALYSIS"
[1] 3
  GPR98 MUTATED GPR98 WILD-TYPE 
             69             420 
  GPR98 MUTATED GPR98 WILD-TYPE 
             69             420 
[1] "MAGEA1 MUTATION ANALYSIS"
[1] 3
  MAGEA1 MUTATED MAGEA1 WILD-TYPE 
              14              475 
  MAGEA1 MUTATED MAGEA1 WILD-TYPE 
              14              475 
[1] "HNF1B MUTATION ANALYSIS"
[1] 3
  HNF1B MUTATED HNF1B WILD-TYPE 
             10             479 
  HNF1B MUTATED HNF1B WILD-TYPE 
             10             479 
[1] "C19ORF66 MUTATION ANALYSIS"
[1] 3
  C19ORF66 MUTATED C19ORF66 WILD-TYPE 
                 4                485 
  C19ORF66 MUTATED C19ORF66 WILD-TYPE 
                 4                485 
[1] "INPP1 MUTATION ANALYSIS"
[1] 3
  INPP1 MUTATED INPP1 WILD-TYPE 
              8             481 
  INPP1 MUTATED INPP1 WILD-TYPE 
              8             481 
[1] "TRIM24 MUTATION ANALYSIS"
[1] 3
  TRIM24 MUTATED TRIM24 WILD-TYPE 
              20              469 
  TRIM24 MUTATED TRIM24 WILD-TYPE 
              20              469 
[1] "C12ORF40 MUTATION ANALYSIS"
[1] 3
  C12ORF40 MUTATED C12ORF40 WILD-TYPE 
                24                465 
  C12ORF40 MUTATED C12ORF40 WILD-TYPE 
                24                465 
[1] "SNAI2 MUTATION ANALYSIS"
[1] 3
  SNAI2 MUTATED SNAI2 WILD-TYPE 
             11             478 
  SNAI2 MUTATED SNAI2 WILD-TYPE 
             11             478 
[1] "DDX5 MUTATION ANALYSIS"
[1] 3
  DDX5 MUTATED DDX5 WILD-TYPE 
             9            480 
  DDX5 MUTATED DDX5 WILD-TYPE 
             9            480 
[1] "PTPDC1 MUTATION ANALYSIS"
[1] 3
  PTPDC1 MUTATED PTPDC1 WILD-TYPE 
              10              479 
  PTPDC1 MUTATED PTPDC1 WILD-TYPE 
              10              479 
[1] "BAG4 MUTATION ANALYSIS"
[1] 3
  BAG4 MUTATED BAG4 WILD-TYPE 
             8            481 
  BAG4 MUTATED BAG4 WILD-TYPE 
             8            481 
[1] "BAZ1B MUTATION ANALYSIS"
[1] 3
  BAZ1B MUTATED BAZ1B WILD-TYPE 
             27             462 
  BAZ1B MUTATED BAZ1B WILD-TYPE 
             27             462 
[1] "PAQR5 MUTATION ANALYSIS"
[1] 3
  PAQR5 MUTATED PAQR5 WILD-TYPE 
              8             481 
  PAQR5 MUTATED PAQR5 WILD-TYPE 
              8             481 
[1] "KDM3B MUTATION ANALYSIS"
[1] 3
  KDM3B MUTATED KDM3B WILD-TYPE 
             34             455 
  KDM3B MUTATED KDM3B WILD-TYPE 
             34             455 
[1] "FAHD2B MUTATION ANALYSIS"
[1] 3
  FAHD2B MUTATED FAHD2B WILD-TYPE 
               6              483 
  FAHD2B MUTATED FAHD2B WILD-TYPE 
               6              483 
[1] "ZCCHC6 MUTATION ANALYSIS"
[1] 3
  ZCCHC6 MUTATED ZCCHC6 WILD-TYPE 
              20              469 
  ZCCHC6 MUTATED ZCCHC6 WILD-TYPE 
              20              469 
[1] "TNMD MUTATION ANALYSIS"
[1] 3
  TNMD MUTATED TNMD WILD-TYPE 
            11            478 
  TNMD MUTATED TNMD WILD-TYPE 
            11            478 
[1] "RNF182 MUTATION ANALYSIS"
[1] 3
  RNF182 MUTATED RNF182 WILD-TYPE 
              16              473 
  RNF182 MUTATED RNF182 WILD-TYPE 
              16              473 
[1] "ERCC5 MUTATION ANALYSIS"
[1] 3
  ERCC5 MUTATED ERCC5 WILD-TYPE 
             23             466 
  ERCC5 MUTATED ERCC5 WILD-TYPE 
             23             466 
[1] "JAK3 MUTATION ANALYSIS"
[1] 3
  JAK3 MUTATED JAK3 WILD-TYPE 
            28            461 
  JAK3 MUTATED JAK3 WILD-TYPE 
            28            461 
[1] "HM13 MUTATION ANALYSIS"
[1] 3
  HM13 MUTATED HM13 WILD-TYPE 
             5            484 
  HM13 MUTATED HM13 WILD-TYPE 
             5            484 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             18             471 
  RBM10 MUTATED RBM10 WILD-TYPE 
             18             471 
[1] "TRPM7 MUTATION ANALYSIS"
[1] 3
  TRPM7 MUTATED TRPM7 WILD-TYPE 
             30             459 
  TRPM7 MUTATED TRPM7 WILD-TYPE 
             30             459 
[1] "CAMSAP1L1 MUTATION ANALYSIS"
[1] 3
  CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE 
                 23                 466 
  CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE 
                 23                 466 
[1] "SLC33A1 MUTATION ANALYSIS"
[1] 3
  SLC33A1 MUTATED SLC33A1 WILD-TYPE 
               10               479 
  SLC33A1 MUTATED SLC33A1 WILD-TYPE 
               10               479 
[1] "F2RL1 MUTATION ANALYSIS"
[1] 3
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              8             481 
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              8             481 
[1] "USP26 MUTATION ANALYSIS"
[1] 3
  USP26 MUTATED USP26 WILD-TYPE 
             24             465 
  USP26 MUTATED USP26 WILD-TYPE 
             24             465 
[1] "WEE1 MUTATION ANALYSIS"
[1] 3
  WEE1 MUTATED WEE1 WILD-TYPE 
            12            477 
  WEE1 MUTATED WEE1 WILD-TYPE 
            12            477 
[1] "ERBB2IP MUTATION ANALYSIS"
[1] 3
  ERBB2IP MUTATED ERBB2IP WILD-TYPE 
               18               471 
  ERBB2IP MUTATED ERBB2IP WILD-TYPE 
               18               471 
[1] "B4GALNT4 MUTATION ANALYSIS"
[1] 3
  B4GALNT4 MUTATED B4GALNT4 WILD-TYPE 
                11                478 
  B4GALNT4 MUTATED B4GALNT4 WILD-TYPE 
                11                478 
[1] "NSUN6 MUTATION ANALYSIS"
[1] 3
  NSUN6 MUTATED NSUN6 WILD-TYPE 
             10             479 
  NSUN6 MUTATED NSUN6 WILD-TYPE 
             10             479 
[1] "KDM5B MUTATION ANALYSIS"
[1] 3
  KDM5B MUTATED KDM5B WILD-TYPE 
             28             461 
  KDM5B MUTATED KDM5B WILD-TYPE 
             28             461 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
           231            258 
  KRAS MUTATED KRAS WILD-TYPE 
           231            258 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
             16             473 
  GATA3 MUTATED GATA3 WILD-TYPE 
             16             473 
[1] "OVCH1 MUTATION ANALYSIS"
[1] 3
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             26             463 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             26             463 
[1] "MUC17 MUTATION ANALYSIS"
[1] 3
  MUC17 MUTATED MUC17 WILD-TYPE 
             55             434 
  MUC17 MUTATED MUC17 WILD-TYPE 
             55             434 
[1] "GTF2B MUTATION ANALYSIS"
[1] 3
  GTF2B MUTATED GTF2B WILD-TYPE 
             12             477 
  GTF2B MUTATED GTF2B WILD-TYPE 
             12             477 
[1] "RUNX1 MUTATION ANALYSIS"
[1] 3
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             41             448 
  RUNX1 MUTATED RUNX1 WILD-TYPE 
             41             448 
[1] "C9ORF84 MUTATION ANALYSIS"
[1] 3
  C9ORF84 MUTATED C9ORF84 WILD-TYPE 
               21               468 
  C9ORF84 MUTATED C9ORF84 WILD-TYPE 
               21               468 
[1] "NR4A2 MUTATION ANALYSIS"
[1] 3
  NR4A2 MUTATED NR4A2 WILD-TYPE 
             13             476 
  NR4A2 MUTATED NR4A2 WILD-TYPE 
             13             476 
[1] "LATS1 MUTATION ANALYSIS"
[1] 3
  LATS1 MUTATED LATS1 WILD-TYPE 
             21             468 
  LATS1 MUTATED LATS1 WILD-TYPE 
             21             468 
[1] "THAP9 MUTATION ANALYSIS"
[1] 3
  THAP9 MUTATED THAP9 WILD-TYPE 
             16             473 
  THAP9 MUTATED THAP9 WILD-TYPE 
             16             473 
[1] "ZNF449 MUTATION ANALYSIS"
[1] 3
  ZNF449 MUTATED ZNF449 WILD-TYPE 
              14              475 
  ZNF449 MUTATED ZNF449 WILD-TYPE 
              14              475 
[1] "PRDM1 MUTATION ANALYSIS"
[1] 3
  PRDM1 MUTATED PRDM1 WILD-TYPE 
             22             467 
  PRDM1 MUTATED PRDM1 WILD-TYPE 
             22             467 
[1] "MBTD1 MUTATION ANALYSIS"
[1] 3
  MBTD1 MUTATED MBTD1 WILD-TYPE 
             11             478 
  MBTD1 MUTATED MBTD1 WILD-TYPE 
             11             478 
[1] "MKL2 MUTATION ANALYSIS"
[1] 3
  MKL2 MUTATED MKL2 WILD-TYPE 
            11            478 
  MKL2 MUTATED MKL2 WILD-TYPE 
            11            478 
[1] "LIG1 MUTATION ANALYSIS"
[1] 3
  LIG1 MUTATED LIG1 WILD-TYPE 
            20            469 
  LIG1 MUTATED LIG1 WILD-TYPE 
            20            469 
[1] "ZNF708 MUTATION ANALYSIS"
[1] 3
  ZNF708 MUTATED ZNF708 WILD-TYPE 
              13              476 
  ZNF708 MUTATED ZNF708 WILD-TYPE 
              13              476 
[1] "IL13RA2 MUTATION ANALYSIS"
[1] 3
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
               16               473 
  IL13RA2 MUTATED IL13RA2 WILD-TYPE 
               16               473 
[1] "FGFR3 MUTATION ANALYSIS"
[1] 3
  FGFR3 MUTATED FGFR3 WILD-TYPE 
             23             466 
  FGFR3 MUTATED FGFR3 WILD-TYPE 
             23             466 
[1] "PTPN12 MUTATION ANALYSIS"
[1] 3
  PTPN12 MUTATED PTPN12 WILD-TYPE 
              21              468 
  PTPN12 MUTATED PTPN12 WILD-TYPE 
              21              468 
[1] "TUBE1 MUTATION ANALYSIS"
[1] 3
  TUBE1 MUTATED TUBE1 WILD-TYPE 
             12             477 
  TUBE1 MUTATED TUBE1 WILD-TYPE 
             12             477 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              23              466 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              23              466 
[1] "OR1J2 MUTATION ANALYSIS"
[1] 3
  OR1J2 MUTATED OR1J2 WILD-TYPE 
             13             476 
  OR1J2 MUTATED OR1J2 WILD-TYPE 
             13             476 
[1] "SPR MUTATION ANALYSIS"
[1] 3
  SPR MUTATED SPR WILD-TYPE 
            7           482 
  SPR MUTATED SPR WILD-TYPE 
            7           482 
[1] "TRIM32 MUTATION ANALYSIS"
[1] 3
  TRIM32 MUTATED TRIM32 WILD-TYPE 
              12              477 
  TRIM32 MUTATED TRIM32 WILD-TYPE 
              12              477 
[1] "TWISTNB MUTATION ANALYSIS"
[1] 3
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                9               480 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                9               480 
[1] "PKDREJ MUTATION ANALYSIS"
[1] 3
  PKDREJ MUTATED PKDREJ WILD-TYPE 
              36              453 
  PKDREJ MUTATED PKDREJ WILD-TYPE 
              36              453 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
            142             347 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
            142             347 
[1] "WNT16 MUTATION ANALYSIS"
[1] 3
  WNT16 MUTATED WNT16 WILD-TYPE 
              8             481 
  WNT16 MUTATED WNT16 WILD-TYPE 
              8             481 
[1] "ZNF189 MUTATION ANALYSIS"
[1] 3
  ZNF189 MUTATED ZNF189 WILD-TYPE 
              19              470 
  ZNF189 MUTATED ZNF189 WILD-TYPE 
              19              470 
[1] "TRRAP MUTATION ANALYSIS"
[1] 3
  TRRAP MUTATED TRRAP WILD-TYPE 
             57             432 
  TRRAP MUTATED TRRAP WILD-TYPE 
             57             432 
[1] "C14ORF43 MUTATION ANALYSIS"
[1] 3
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                20                469 
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                20                469 
[1] "LHCGR MUTATION ANALYSIS"
[1] 3
  LHCGR MUTATED LHCGR WILD-TYPE 
             24             465 
  LHCGR MUTATED LHCGR WILD-TYPE 
             24             465 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              40              449 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              40              449 
[1] "PRKCH MUTATION ANALYSIS"
[1] 3
  PRKCH MUTATED PRKCH WILD-TYPE 
             14             475 
  PRKCH MUTATED PRKCH WILD-TYPE 
             14             475 
[1] "FNDC7 MUTATION ANALYSIS"
[1] 3
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              9             480 
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              9             480 
[1] "ZNF438 MUTATION ANALYSIS"
[1] 3
  ZNF438 MUTATED ZNF438 WILD-TYPE 
              13              476 
  ZNF438 MUTATED ZNF438 WILD-TYPE 
              13              476 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            44            445 
  NRAS MUTATED NRAS WILD-TYPE 
            44            445 
[1] "HIST1H1E MUTATION ANALYSIS"
[1] 3
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 6                483 
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 6                483 
[1] "ZAK MUTATION ANALYSIS"
[1] 3
  ZAK MUTATED ZAK WILD-TYPE 
            9           480 
  ZAK MUTATED ZAK WILD-TYPE 
            9           480 
[1] "SLC24A2 MUTATION ANALYSIS"
[1] 3
  SLC24A2 MUTATED SLC24A2 WILD-TYPE 
               19               470 
  SLC24A2 MUTATED SLC24A2 WILD-TYPE 
               19               470 
[1] "HORMAD1 MUTATION ANALYSIS"
[1] 3
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
               13               476 
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
               13               476 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
           109            380 
  BRAF MUTATED BRAF WILD-TYPE 
           109            380 
[1] "DDX59 MUTATION ANALYSIS"
[1] 3
  DDX59 MUTATED DDX59 WILD-TYPE 
             13             476 
  DDX59 MUTATED DDX59 WILD-TYPE 
             13             476 
[1] "NLRP13 MUTATION ANALYSIS"
[1] 3
  NLRP13 MUTATED NLRP13 WILD-TYPE 
              31              458 
  NLRP13 MUTATED NLRP13 WILD-TYPE 
              31              458 
[1] "MKI67 MUTATION ANALYSIS"
[1] 3
  MKI67 MUTATED MKI67 WILD-TYPE 
             44             445 
  MKI67 MUTATED MKI67 WILD-TYPE 
             44             445 
[1] "MET MUTATION ANALYSIS"
[1] 3
  MET MUTATED MET WILD-TYPE 
           49           440 
  MET MUTATED MET WILD-TYPE 
           49           440 
[1] "PIK3C2A MUTATION ANALYSIS"
[1] 3
  PIK3C2A MUTATED PIK3C2A WILD-TYPE 
               22               467 
  PIK3C2A MUTATED PIK3C2A WILD-TYPE 
               22               467 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             30             459 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             30             459 
[1] "CENPF MUTATION ANALYSIS"
[1] 3
  CENPF MUTATED CENPF WILD-TYPE 
             46             443 
  CENPF MUTATED CENPF WILD-TYPE 
             46             443 
[1] "TXNDC15 MUTATION ANALYSIS"
[1] 3
  TXNDC15 MUTATED TXNDC15 WILD-TYPE 
                7               482 
  TXNDC15 MUTATED TXNDC15 WILD-TYPE 
                7               482 
[1] "TSHR MUTATION ANALYSIS"
[1] 3
  TSHR MUTATED TSHR WILD-TYPE 
            48            441 
  TSHR MUTATED TSHR WILD-TYPE 
            48            441 
[1] "KIAA1012 MUTATION ANALYSIS"
[1] 3
  KIAA1012 MUTATED KIAA1012 WILD-TYPE 
                25                464 
  KIAA1012 MUTATED KIAA1012 WILD-TYPE 
                25                464 
[1] "CHML MUTATION ANALYSIS"
[1] 3
  CHML MUTATED CHML WILD-TYPE 
            24            465 
  CHML MUTATED CHML WILD-TYPE 
            24            465 
[1] "TGFBR1 MUTATION ANALYSIS"
[1] 3
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
              17              472 
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
              17              472 
[1] "ETAA1 MUTATION ANALYSIS"
[1] 3
  ETAA1 MUTATED ETAA1 WILD-TYPE 
             18             471 
  ETAA1 MUTATED ETAA1 WILD-TYPE 
             18             471 
[1] "DEPDC5 MUTATION ANALYSIS"
[1] 3
  DEPDC5 MUTATED DEPDC5 WILD-TYPE 
              24              465 
  DEPDC5 MUTATED DEPDC5 WILD-TYPE 
              24              465 
[1] "DPCR1 MUTATION ANALYSIS"
[1] 3
  DPCR1 MUTATED DPCR1 WILD-TYPE 
             15             474 
  DPCR1 MUTATED DPCR1 WILD-TYPE 
             15             474 
[1] "NOTCH2NL MUTATION ANALYSIS"
[1] 3
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 6                483 
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 6                483 
[1] "RNF160 MUTATION ANALYSIS"
[1] 3
  RNF160 MUTATED RNF160 WILD-TYPE 
              18              471 
  RNF160 MUTATED RNF160 WILD-TYPE 
              18              471 
[1] "MYO3B MUTATION ANALYSIS"
[1] 3
  MYO3B MUTATED MYO3B WILD-TYPE 
             34             455 
  MYO3B MUTATED MYO3B WILD-TYPE 
             34             455 
[1] "TRIM23 MUTATION ANALYSIS"
[1] 3
  TRIM23 MUTATED TRIM23 WILD-TYPE 
              13              476 
  TRIM23 MUTATED TRIM23 WILD-TYPE 
              13              476 
[1] "AGFG1 MUTATION ANALYSIS"
[1] 3
  AGFG1 MUTATED AGFG1 WILD-TYPE 
             16             473 
  AGFG1 MUTATED AGFG1 WILD-TYPE 
             16             473 
[1] "KCNS3 MUTATION ANALYSIS"
[1] 3
  KCNS3 MUTATED KCNS3 WILD-TYPE 
             21             468 
  KCNS3 MUTATED KCNS3 WILD-TYPE 
             21             468 
[1] "GPR112 MUTATION ANALYSIS"
[1] 3
  GPR112 MUTATED GPR112 WILD-TYPE 
              38              451 
  GPR112 MUTATED GPR112 WILD-TYPE 
              38              451 
[1] "PTPRK MUTATION ANALYSIS"
[1] 3
  PTPRK MUTATED PTPRK WILD-TYPE 
             38             451 
  PTPRK MUTATED PTPRK WILD-TYPE 
             38             451 
[1] "DCAF6 MUTATION ANALYSIS"
[1] 3
  DCAF6 MUTATED DCAF6 WILD-TYPE 
             18             471 
  DCAF6 MUTATED DCAF6 WILD-TYPE 
             18             471 
[1] "CCDC18 MUTATION ANALYSIS"
[1] 3
  CCDC18 MUTATED CCDC18 WILD-TYPE 
              13              476 
  CCDC18 MUTATED CCDC18 WILD-TYPE 
              13              476 
[1] "RAB28 MUTATION ANALYSIS"
[1] 3
  RAB28 MUTATED RAB28 WILD-TYPE 
              7             482 
  RAB28 MUTATED RAB28 WILD-TYPE 
              7             482 
[1] "ARHGEF10 MUTATION ANALYSIS"
[1] 3
  ARHGEF10 MUTATED ARHGEF10 WILD-TYPE 
                24                465 
  ARHGEF10 MUTATED ARHGEF10 WILD-TYPE 
                24                465 
[1] "HEPACAM2 MUTATION ANALYSIS"
[1] 3
  HEPACAM2 MUTATED HEPACAM2 WILD-TYPE 
                14                475 
  HEPACAM2 MUTATED HEPACAM2 WILD-TYPE 
                14                475 
[1] "KCNH7 MUTATION ANALYSIS"
[1] 3
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             38             451 
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             38             451 
[1] "AGBL2 MUTATION ANALYSIS"
[1] 3
  AGBL2 MUTATED AGBL2 WILD-TYPE 
             15             474 
  AGBL2 MUTATED AGBL2 WILD-TYPE 
             15             474 
[1] "ACP6 MUTATION ANALYSIS"
[1] 3
  ACP6 MUTATED ACP6 WILD-TYPE 
             6            483 
  ACP6 MUTATED ACP6 WILD-TYPE 
             6            483 
[1] "UBC MUTATION ANALYSIS"
[1] 3
  UBC MUTATED UBC WILD-TYPE 
            5           484 
  UBC MUTATED UBC WILD-TYPE 
            5           484 
[1] "BRCA2 MUTATION ANALYSIS"
[1] 3
  BRCA2 MUTATED BRCA2 WILD-TYPE 
             58             431 
  BRCA2 MUTATED BRCA2 WILD-TYPE 
             58             431 
[1] "EZH2 MUTATION ANALYSIS"
[1] 3
  EZH2 MUTATED EZH2 WILD-TYPE 
            46            443 
  EZH2 MUTATED EZH2 WILD-TYPE 
            46            443 
[1] "OR5B2 MUTATION ANALYSIS"
[1] 3
  OR5B2 MUTATED OR5B2 WILD-TYPE 
             15             474 
  OR5B2 MUTATED OR5B2 WILD-TYPE 
             15             474 
[1] "GABRA6 MUTATION ANALYSIS"
[1] 3
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              21              468 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
              21              468 
[1] "LYST MUTATION ANALYSIS"
[1] 3
  LYST MUTATED LYST WILD-TYPE 
            40            449 
  LYST MUTATED LYST WILD-TYPE 
            40            449 
[1] "PPP2R1A MUTATION ANALYSIS"
[1] 3
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
               14               475 
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
               14               475 
[1] "NUP54 MUTATION ANALYSIS"
[1] 3
  NUP54 MUTATED NUP54 WILD-TYPE 
             10             479 
  NUP54 MUTATED NUP54 WILD-TYPE 
             10             479 
[1] "OR11G2 MUTATION ANALYSIS"
[1] 3
  OR11G2 MUTATED OR11G2 WILD-TYPE 
               6              483 
  OR11G2 MUTATED OR11G2 WILD-TYPE 
               6              483 
[1] "FUBP3 MUTATION ANALYSIS"
[1] 3
  FUBP3 MUTATED FUBP3 WILD-TYPE 
              9             480 
  FUBP3 MUTATED FUBP3 WILD-TYPE 
              9             480 
[1] "TOB1 MUTATION ANALYSIS"
[1] 3
  TOB1 MUTATED TOB1 WILD-TYPE 
             8            481 
  TOB1 MUTATED TOB1 WILD-TYPE 
             8            481 
[1] "DAXX MUTATION ANALYSIS"
[1] 3
  DAXX MUTATED DAXX WILD-TYPE 
            16            473 
  DAXX MUTATED DAXX WILD-TYPE 
            16            473 
[1] "MARK1 MUTATION ANALYSIS"
[1] 3
  MARK1 MUTATED MARK1 WILD-TYPE 
             29             460 
  MARK1 MUTATED MARK1 WILD-TYPE 
             29             460 
[1] "USP25 MUTATION ANALYSIS"
[1] 3
  USP25 MUTATED USP25 WILD-TYPE 
             23             466 
  USP25 MUTATED USP25 WILD-TYPE 
             23             466 
[1] "TOPORS MUTATION ANALYSIS"
[1] 3
  TOPORS MUTATED TOPORS WILD-TYPE 
              22              467 
  TOPORS MUTATED TOPORS WILD-TYPE 
              22              467 
[1] "ENPEP MUTATION ANALYSIS"
[1] 3
  ENPEP MUTATED ENPEP WILD-TYPE 
             23             466 
  ENPEP MUTATED ENPEP WILD-TYPE 
             23             466 
[1] "RING1 MUTATION ANALYSIS"
[1] 3
  RING1 MUTATED RING1 WILD-TYPE 
             11             478 
  RING1 MUTATED RING1 WILD-TYPE 
             11             478 
[1] "NGEF MUTATION ANALYSIS"
[1] 3
  NGEF MUTATED NGEF WILD-TYPE 
            18            471 
  NGEF MUTATED NGEF WILD-TYPE 
            18            471 
[1] "MMAA MUTATION ANALYSIS"
[1] 3
  MMAA MUTATED MMAA WILD-TYPE 
            12            477 
  MMAA MUTATED MMAA WILD-TYPE 
            12            477 
[1] "ZNF630 MUTATION ANALYSIS"
[1] 3
  ZNF630 MUTATED ZNF630 WILD-TYPE 
               9              480 
  ZNF630 MUTATED ZNF630 WILD-TYPE 
               9              480 
[1] "KIR2DL3 MUTATION ANALYSIS"
[1] 3
  KIR2DL3 MUTATED KIR2DL3 WILD-TYPE 
               19               470 
  KIR2DL3 MUTATED KIR2DL3 WILD-TYPE 
               19               470 
[1] "SLC7A6 MUTATION ANALYSIS"
[1] 3
  SLC7A6 MUTATED SLC7A6 WILD-TYPE 
               7              482 
  SLC7A6 MUTATED SLC7A6 WILD-TYPE 
               7              482 
[1] "JMJD1C MUTATION ANALYSIS"
[1] 3
  JMJD1C MUTATED JMJD1C WILD-TYPE 
              27              462 
  JMJD1C MUTATED JMJD1C WILD-TYPE 
              27              462 
[1] "C6ORF170 MUTATION ANALYSIS"
[1] 3
  C6ORF170 MUTATED C6ORF170 WILD-TYPE 
                23                466 
  C6ORF170 MUTATED C6ORF170 WILD-TYPE 
                23                466 
[1] "MSH2 MUTATION ANALYSIS"
[1] 3
  MSH2 MUTATED MSH2 WILD-TYPE 
            37            452 
  MSH2 MUTATED MSH2 WILD-TYPE 
            37            452 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             46             443 
  EP300 MUTATED EP300 WILD-TYPE 
             46             443 
[1] "SKIL MUTATION ANALYSIS"
[1] 3
  SKIL MUTATED SKIL WILD-TYPE 
             9            480 
  SKIL MUTATED SKIL WILD-TYPE 
             9            480 
[1] "TIAL1 MUTATION ANALYSIS"
[1] 3
  TIAL1 MUTATED TIAL1 WILD-TYPE 
             13             476 
  TIAL1 MUTATED TIAL1 WILD-TYPE 
             13             476 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              18              471 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              18              471 
[1] "SMC2 MUTATION ANALYSIS"
[1] 3
  SMC2 MUTATED SMC2 WILD-TYPE 
            29            460 
  SMC2 MUTATED SMC2 WILD-TYPE 
            29            460 
[1] "C14ORF159 MUTATION ANALYSIS"
[1] 3
  C14ORF159 MUTATED C14ORF159 WILD-TYPE 
                 10                 479 
  C14ORF159 MUTATED C14ORF159 WILD-TYPE 
                 10                 479 
[1] "IQGAP2 MUTATION ANALYSIS"
[1] 3
  IQGAP2 MUTATED IQGAP2 WILD-TYPE 
              27              462 
  IQGAP2 MUTATED IQGAP2 WILD-TYPE 
              27              462 
[1] "DNAH11 MUTATION ANALYSIS"
[1] 3
  DNAH11 MUTATED DNAH11 WILD-TYPE 
              75              414 
  DNAH11 MUTATED DNAH11 WILD-TYPE 
              75              414 
[1] "EPHA7 MUTATION ANALYSIS"
[1] 3
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             42             447 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             42             447 
[1] "DNAH8 MUTATION ANALYSIS"
[1] 3
  DNAH8 MUTATED DNAH8 WILD-TYPE 
             67             422 
  DNAH8 MUTATED DNAH8 WILD-TYPE 
             67             422 
[1] "MACF1 MUTATION ANALYSIS"
[1] 3
  MACF1 MUTATED MACF1 WILD-TYPE 
             66             423 
  MACF1 MUTATED MACF1 WILD-TYPE 
             66             423 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                28                461 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                28                461 
[1] "WDR78 MUTATION ANALYSIS"
[1] 3
  WDR78 MUTATED WDR78 WILD-TYPE 
             16             473 
  WDR78 MUTATED WDR78 WILD-TYPE 
             16             473 
[1] "TRIM13 MUTATION ANALYSIS"
[1] 3
  TRIM13 MUTATED TRIM13 WILD-TYPE 
               8              481 
  TRIM13 MUTATED TRIM13 WILD-TYPE 
               8              481 
[1] "OR1I1 MUTATION ANALYSIS"
[1] 3
  OR1I1 MUTATED OR1I1 WILD-TYPE 
             11             478 
  OR1I1 MUTATED OR1I1 WILD-TYPE 
             11             478 
[1] "ACOT9 MUTATION ANALYSIS"
[1] 3
  ACOT9 MUTATED ACOT9 WILD-TYPE 
              5             484 
  ACOT9 MUTATED ACOT9 WILD-TYPE 
              5             484 
[1] "GPX6 MUTATION ANALYSIS"
[1] 3
  GPX6 MUTATED GPX6 WILD-TYPE 
            10            479 
  GPX6 MUTATED GPX6 WILD-TYPE 
            10            479 
[1] "KIAA1797 MUTATION ANALYSIS"
[1] 3
  KIAA1797 MUTATED KIAA1797 WILD-TYPE 
                24                465 
  KIAA1797 MUTATED KIAA1797 WILD-TYPE 
                24                465 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            77            412 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            77            412 
[1] "KPNA5 MUTATION ANALYSIS"
[1] 3
  KPNA5 MUTATED KPNA5 WILD-TYPE 
             11             478 
  KPNA5 MUTATED KPNA5 WILD-TYPE 
             11             478 
[1] "DMRTB1 MUTATION ANALYSIS"
[1] 3
  DMRTB1 MUTATED DMRTB1 WILD-TYPE 
               6              483 
  DMRTB1 MUTATED DMRTB1 WILD-TYPE 
               6              483 
[1] "NUP160 MUTATION ANALYSIS"
[1] 3
  NUP160 MUTATED NUP160 WILD-TYPE 
              11              478 
  NUP160 MUTATED NUP160 WILD-TYPE 
              11              478 
[1] "GRIA4 MUTATION ANALYSIS"
[1] 3
  GRIA4 MUTATED GRIA4 WILD-TYPE 
             37             452 
  GRIA4 MUTATED GRIA4 WILD-TYPE 
             37             452 
[1] "FBLN5 MUTATION ANALYSIS"
[1] 3
  FBLN5 MUTATED FBLN5 WILD-TYPE 
             10             479 
  FBLN5 MUTATED FBLN5 WILD-TYPE 
             10             479 
[1] "FBXO34 MUTATION ANALYSIS"
[1] 3
  FBXO34 MUTATED FBXO34 WILD-TYPE 
              12              477 
  FBXO34 MUTATED FBXO34 WILD-TYPE 
              12              477 
[1] "BRCA1 MUTATION ANALYSIS"
[1] 3
  BRCA1 MUTATED BRCA1 WILD-TYPE 
             29             460 
  BRCA1 MUTATED BRCA1 WILD-TYPE 
             29             460 
[1] "INSRR MUTATION ANALYSIS"
[1] 3
  INSRR MUTATED INSRR WILD-TYPE 
             32             457 
  INSRR MUTATED INSRR WILD-TYPE 
             32             457 
[1] "FBN2 MUTATION ANALYSIS"
[1] 3
  FBN2 MUTATED FBN2 WILD-TYPE 
            46            443 
  FBN2 MUTATED FBN2 WILD-TYPE 
            46            443 
[1] "STAB2 MUTATION ANALYSIS"
[1] 3
  STAB2 MUTATED STAB2 WILD-TYPE 
             36             453 
  STAB2 MUTATED STAB2 WILD-TYPE 
             36             453 
[1] "ATP6V1A MUTATION ANALYSIS"
[1] 3
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
               11               478 
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
               11               478 
[1] "DUSP19 MUTATION ANALYSIS"
[1] 3
  DUSP19 MUTATED DUSP19 WILD-TYPE 
              12              477 
  DUSP19 MUTATED DUSP19 WILD-TYPE 
              12              477 
[1] "MRPS5 MUTATION ANALYSIS"
[1] 3
  MRPS5 MUTATED MRPS5 WILD-TYPE 
             12             477 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
             12             477 
[1] "UIMC1 MUTATION ANALYSIS"
[1] 3
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              9             480 
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              9             480 
[1] "LRP2 MUTATION ANALYSIS"
[1] 3
  LRP2 MUTATED LRP2 WILD-TYPE 
            87            402 
  LRP2 MUTATED LRP2 WILD-TYPE 
            87            402 
[1] "FUT10 MUTATION ANALYSIS"
[1] 3
  FUT10 MUTATED FUT10 WILD-TYPE 
              7             482 
  FUT10 MUTATED FUT10 WILD-TYPE 
              7             482 
[1] "GAB2 MUTATION ANALYSIS"
[1] 3
  GAB2 MUTATED GAB2 WILD-TYPE 
            10            479 
  GAB2 MUTATED GAB2 WILD-TYPE 
            10            479 
[1] "DSG1 MUTATION ANALYSIS"
[1] 3
  DSG1 MUTATED DSG1 WILD-TYPE 
            21            468 
  DSG1 MUTATED DSG1 WILD-TYPE 
            21            468 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
            26            463 
  DKK2 MUTATED DKK2 WILD-TYPE 
            26            463 
[1] "COX15 MUTATION ANALYSIS"
[1] 3
  COX15 MUTATED COX15 WILD-TYPE 
              7             482 
  COX15 MUTATED COX15 WILD-TYPE 
              7             482 
[1] "JAK2 MUTATION ANALYSIS"
[1] 3
  JAK2 MUTATED JAK2 WILD-TYPE 
            46            443 
  JAK2 MUTATED JAK2 WILD-TYPE 
            46            443 
[1] "HIVEP2 MUTATION ANALYSIS"
[1] 3
  HIVEP2 MUTATED HIVEP2 WILD-TYPE 
              24              465 
  HIVEP2 MUTATED HIVEP2 WILD-TYPE 
              24              465 
[1] "RELN MUTATION ANALYSIS"
[1] 3
  RELN MUTATED RELN WILD-TYPE 
            71            418 
  RELN MUTATED RELN WILD-TYPE 
            71            418 
[1] "FLG2 MUTATION ANALYSIS"
[1] 3
  FLG2 MUTATED FLG2 WILD-TYPE 
            33            456 
  FLG2 MUTATED FLG2 WILD-TYPE 
            33            456 
[1] "HMCN1 MUTATION ANALYSIS"
[1] 3
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             82             407 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             82             407 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
             211              278 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
             211              278 
[1] "PRKD1 MUTATION ANALYSIS"
[1] 3
  PRKD1 MUTATED PRKD1 WILD-TYPE 
             29             460 
  PRKD1 MUTATED PRKD1 WILD-TYPE 
             29             460 
[1] "ADAMTS19 MUTATION ANALYSIS"
[1] 3
  ADAMTS19 MUTATED ADAMTS19 WILD-TYPE 
                25                464 
  ADAMTS19 MUTATED ADAMTS19 WILD-TYPE 
                25                464 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
             10             479 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
             10             479 
[1] "GTF3C3 MUTATION ANALYSIS"
[1] 3
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
              18              471 
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
              18              471 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            54            435 
  BAI3 MUTATED BAI3 WILD-TYPE 
            54            435 
[1] "AURKA MUTATION ANALYSIS"
[1] 3
  AURKA MUTATED AURKA WILD-TYPE 
              7             482 
  AURKA MUTATED AURKA WILD-TYPE 
              7             482 
[1] "RBM7 MUTATION ANALYSIS"
[1] 3
  RBM7 MUTATED RBM7 WILD-TYPE 
            11            478 
  RBM7 MUTATED RBM7 WILD-TYPE 
            11            478 
[1] "CNTNAP5 MUTATION ANALYSIS"
[1] 3
  CNTNAP5 MUTATED CNTNAP5 WILD-TYPE 
               47               442 
  CNTNAP5 MUTATED CNTNAP5 WILD-TYPE 
               47               442 
[1] "TMPRSS15 MUTATION ANALYSIS"
[1] 3
  TMPRSS15 MUTATED TMPRSS15 WILD-TYPE 
                26                463 
  TMPRSS15 MUTATED TMPRSS15 WILD-TYPE 
                26                463 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            84            405 
  EGFR MUTATED EGFR WILD-TYPE 
            84            405 
[1] "CTBP2 MUTATION ANALYSIS"
[1] 3
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              7             482 
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              7             482 
[1] "APOB MUTATION ANALYSIS"
[1] 3
  APOB MUTATED APOB WILD-TYPE 
            67            422 
  APOB MUTATED APOB WILD-TYPE 
            67            422 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             65             424 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             65             424 
[1] "PTPN11 MUTATION ANALYSIS"
[1] 3
  PTPN11 MUTATED PTPN11 WILD-TYPE 
              40              449 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
              40              449 
[1] "KIAA1409 MUTATION ANALYSIS"
[1] 3
  KIAA1409 MUTATED KIAA1409 WILD-TYPE 
                43                446 
  KIAA1409 MUTATED KIAA1409 WILD-TYPE 
                43                446 
[1] "DOCK1 MUTATION ANALYSIS"
[1] 3
  DOCK1 MUTATED DOCK1 WILD-TYPE 
             27             462 
  DOCK1 MUTATED DOCK1 WILD-TYPE 
             27             462 
[1] "GRM8 MUTATION ANALYSIS"
[1] 3
  GRM8 MUTATED GRM8 WILD-TYPE 
            22            467 
  GRM8 MUTATED GRM8 WILD-TYPE 
            22            467 
[1] "NTRK3 MUTATION ANALYSIS"
[1] 3
  NTRK3 MUTATED NTRK3 WILD-TYPE 
             31             458 
  NTRK3 MUTATED NTRK3 WILD-TYPE 
             31             458 
[1] "ANKRD30A MUTATION ANALYSIS"
[1] 3
  ANKRD30A MUTATED ANKRD30A WILD-TYPE 
                33                456 
  ANKRD30A MUTATED ANKRD30A WILD-TYPE 
                33                456 
[1] "MYH1 MUTATION ANALYSIS"
[1] 3
  MYH1 MUTATED MYH1 WILD-TYPE 
            36            453 
  MYH1 MUTATED MYH1 WILD-TYPE 
            36            453 
[1] "PHF3 MUTATION ANALYSIS"
[1] 3
  PHF3 MUTATED PHF3 WILD-TYPE 
            26            463 
  PHF3 MUTATED PHF3 WILD-TYPE 
            26            463 
[1] "PLCB2 MUTATION ANALYSIS"
[1] 3
  PLCB2 MUTATED PLCB2 WILD-TYPE 
             10             479 
  PLCB2 MUTATED PLCB2 WILD-TYPE 
             10             479 
[1] "PTPRD MUTATION ANALYSIS"
[1] 3
  PTPRD MUTATED PTPRD WILD-TYPE 
             38             451 
  PTPRD MUTATED PTPRD WILD-TYPE 
             38             451 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
            108             381 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
            108             381 
[1] "USH2A MUTATION ANALYSIS"
[1] 3
  USH2A MUTATED USH2A WILD-TYPE 
             88             401 
  USH2A MUTATED USH2A WILD-TYPE 
             88             401 
[1] "MYEOV MUTATION ANALYSIS"
[1] 3
  MYEOV MUTATED MYEOV WILD-TYPE 
              7             482 
  MYEOV MUTATED MYEOV WILD-TYPE 
              7             482 
[1] "BRE MUTATION ANALYSIS"
[1] 3
  BRE MUTATED BRE WILD-TYPE 
           12           477 
  BRE MUTATED BRE WILD-TYPE 
           12           477 
[1] "SCN3A MUTATION ANALYSIS"
[1] 3
  SCN3A MUTATED SCN3A WILD-TYPE 
             49             440 
  SCN3A MUTATED SCN3A WILD-TYPE 
             49             440 
[1] "FKTN MUTATION ANALYSIS"
[1] 3
  FKTN MUTATED FKTN WILD-TYPE 
             9            480 
  FKTN MUTATED FKTN WILD-TYPE 
             9            480 
[1] "MIER1 MUTATION ANALYSIS"
[1] 3
  MIER1 MUTATED MIER1 WILD-TYPE 
              8             481 
  MIER1 MUTATED MIER1 WILD-TYPE 
              8             481 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               15               474 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               15               474 
[1] "PAK3 MUTATION ANALYSIS"
[1] 3
  PAK3 MUTATED PAK3 WILD-TYPE 
            20            469 
  PAK3 MUTATED PAK3 WILD-TYPE 
            20            469 
[1] "RAF1 MUTATION ANALYSIS"
[1] 3
  RAF1 MUTATED RAF1 WILD-TYPE 
            15            474 
  RAF1 MUTATED RAF1 WILD-TYPE 
            15            474 
[1] "ASNSD1 MUTATION ANALYSIS"
[1] 3
  ASNSD1 MUTATED ASNSD1 WILD-TYPE 
              10              479 
  ASNSD1 MUTATED ASNSD1 WILD-TYPE 
              10              479 
[1] "ABCC4 MUTATION ANALYSIS"
[1] 3
  ABCC4 MUTATED ABCC4 WILD-TYPE 
             20             469 
  ABCC4 MUTATED ABCC4 WILD-TYPE 
             20             469 
[1] "CYLC1 MUTATION ANALYSIS"
[1] 3
  CYLC1 MUTATED CYLC1 WILD-TYPE 
             34             455 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
             34             455 
[1] "RNF111 MUTATION ANALYSIS"
[1] 3
  RNF111 MUTATED RNF111 WILD-TYPE 
              16              473 
  RNF111 MUTATED RNF111 WILD-TYPE 
              16              473 
[1] "CLIP4 MUTATION ANALYSIS"
[1] 3
  CLIP4 MUTATED CLIP4 WILD-TYPE 
             14             475 
  CLIP4 MUTATED CLIP4 WILD-TYPE 
             14             475 
[1] "SULT6B1 MUTATION ANALYSIS"
[1] 3
  SULT6B1 MUTATED SULT6B1 WILD-TYPE 
               12               477 
  SULT6B1 MUTATED SULT6B1 WILD-TYPE 
               12               477 
[1] "PLA2G4E MUTATION ANALYSIS"
[1] 3
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
               11               478 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
               11               478 
[1] "CLCNKA MUTATION ANALYSIS"
[1] 3
  CLCNKA MUTATED CLCNKA WILD-TYPE 
              10              479 
  CLCNKA MUTATED CLCNKA WILD-TYPE 
              10              479 
[1] "ERCC6 MUTATION ANALYSIS"
[1] 3
  ERCC6 MUTATED ERCC6 WILD-TYPE 
             33             456 
  ERCC6 MUTATED ERCC6 WILD-TYPE 
             33             456 
[1] "ALG2 MUTATION ANALYSIS"
[1] 3
  ALG2 MUTATED ALG2 WILD-TYPE 
             8            481 
  ALG2 MUTATED ALG2 WILD-TYPE 
             8            481 
[1] "C9ORF131 MUTATION ANALYSIS"
[1] 3
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                13                476 
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                13                476 
[1] "EXT1 MUTATION ANALYSIS"
[1] 3
  EXT1 MUTATED EXT1 WILD-TYPE 
            20            469 
  EXT1 MUTATED EXT1 WILD-TYPE 
            20            469 
[1] "IGFBP7 MUTATION ANALYSIS"
[1] 3
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               5              484 
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               5              484 
[1] "C6ORF89 MUTATION ANALYSIS"
[1] 3
  C6ORF89 MUTATED C6ORF89 WILD-TYPE 
                7               482 
  C6ORF89 MUTATED C6ORF89 WILD-TYPE 
                7               482 
[1] "ART5 MUTATION ANALYSIS"
[1] 3
  ART5 MUTATED ART5 WILD-TYPE 
            10            479 
  ART5 MUTATED ART5 WILD-TYPE 
            10            479 
[1] "CUL2 MUTATION ANALYSIS"
[1] 3
  CUL2 MUTATED CUL2 WILD-TYPE 
            15            474 
  CUL2 MUTATED CUL2 WILD-TYPE 
            15            474 
[1] "CDC6 MUTATION ANALYSIS"
[1] 3
  CDC6 MUTATED CDC6 WILD-TYPE 
            10            479 
  CDC6 MUTATED CDC6 WILD-TYPE 
            10            479 
[1] "SOX7 MUTATION ANALYSIS"
[1] 3
  SOX7 MUTATED SOX7 WILD-TYPE 
            12            477 
  SOX7 MUTATED SOX7 WILD-TYPE 
            12            477 
[1] "ZNF644 MUTATION ANALYSIS"
[1] 3
  ZNF644 MUTATED ZNF644 WILD-TYPE 
              21              468 
  ZNF644 MUTATED ZNF644 WILD-TYPE 
              21              468 
[1] "XPOT MUTATION ANALYSIS"
[1] 3
  XPOT MUTATED XPOT WILD-TYPE 
            11            478 
  XPOT MUTATED XPOT WILD-TYPE 
            11            478 
[1] "TIFA MUTATION ANALYSIS"
[1] 3
  TIFA MUTATED TIFA WILD-TYPE 
             6            483 
  TIFA MUTATED TIFA WILD-TYPE 
             6            483 
[1] "STK38L MUTATION ANALYSIS"
[1] 3
  STK38L MUTATED STK38L WILD-TYPE 
              10              479 
  STK38L MUTATED STK38L WILD-TYPE 
              10              479 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               33               456 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               33               456 
[1] "ZNF691 MUTATION ANALYSIS"
[1] 3
  ZNF691 MUTATED ZNF691 WILD-TYPE 
               8              481 
  ZNF691 MUTATED ZNF691 WILD-TYPE 
               8              481 
[1] "UBR4 MUTATION ANALYSIS"
[1] 3
  UBR4 MUTATED UBR4 WILD-TYPE 
            47            442 
  UBR4 MUTATED UBR4 WILD-TYPE 
            47            442 
[1] "LPCAT3 MUTATION ANALYSIS"
[1] 3
  LPCAT3 MUTATED LPCAT3 WILD-TYPE 
               5              484 
  LPCAT3 MUTATED LPCAT3 WILD-TYPE 
               5              484 
[1] "STX7 MUTATION ANALYSIS"
[1] 3
  STX7 MUTATED STX7 WILD-TYPE 
             5            484 
  STX7 MUTATED STX7 WILD-TYPE 
             5            484 
[1] "SLC2A3 MUTATION ANALYSIS"
[1] 3
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
              12              477 
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
              12              477 
[1] "HDAC1 MUTATION ANALYSIS"
[1] 3
  HDAC1 MUTATED HDAC1 WILD-TYPE 
              5             484 
  HDAC1 MUTATED HDAC1 WILD-TYPE 
              5             484 
[1] "RUFY1 MUTATION ANALYSIS"
[1] 3
  RUFY1 MUTATED RUFY1 WILD-TYPE 
             14             475 
  RUFY1 MUTATED RUFY1 WILD-TYPE 
             14             475 
[1] "PSD MUTATION ANALYSIS"
[1] 3
  PSD MUTATED PSD WILD-TYPE 
           17           472 
  PSD MUTATED PSD WILD-TYPE 
           17           472 
[1] "CDC5L MUTATION ANALYSIS"
[1] 3
  CDC5L MUTATED CDC5L WILD-TYPE 
             13             476 
  CDC5L MUTATED CDC5L WILD-TYPE 
             13             476 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             37             452 
  ARID2 MUTATED ARID2 WILD-TYPE 
             37             452 
[1] "SCLT1 MUTATION ANALYSIS"
[1] 3
  SCLT1 MUTATED SCLT1 WILD-TYPE 
             19             470 
  SCLT1 MUTATED SCLT1 WILD-TYPE 
             19             470 
[1] "ZFC3H1 MUTATION ANALYSIS"
[1] 3
  ZFC3H1 MUTATED ZFC3H1 WILD-TYPE 
              21              468 
  ZFC3H1 MUTATED ZFC3H1 WILD-TYPE 
              21              468 
[1] "OR2M3 MUTATION ANALYSIS"
[1] 3
  OR2M3 MUTATED OR2M3 WILD-TYPE 
             17             472 
  OR2M3 MUTATED OR2M3 WILD-TYPE 
             17             472 
[1] "RNF145 MUTATION ANALYSIS"
[1] 3
  RNF145 MUTATED RNF145 WILD-TYPE 
              17              472 
  RNF145 MUTATED RNF145 WILD-TYPE 
              17              472 
[1] "TMEM169 MUTATION ANALYSIS"
[1] 3
  TMEM169 MUTATED TMEM169 WILD-TYPE 
               14               475 
  TMEM169 MUTATED TMEM169 WILD-TYPE 
               14               475 
[1] "NOX5 MUTATION ANALYSIS"
[1] 3
  NOX5 MUTATED NOX5 WILD-TYPE 
             5            484 
  NOX5 MUTATED NOX5 WILD-TYPE 
             5            484 
[1] "HAS2 MUTATION ANALYSIS"
[1] 3
  HAS2 MUTATED HAS2 WILD-TYPE 
            10            479 
  HAS2 MUTATED HAS2 WILD-TYPE 
            10            479 
[1] "INSM2 MUTATION ANALYSIS"
[1] 3
  INSM2 MUTATED INSM2 WILD-TYPE 
             11             478 
  INSM2 MUTATED INSM2 WILD-TYPE 
             11             478 
[1] "SCLY MUTATION ANALYSIS"
[1] 3
  SCLY MUTATED SCLY WILD-TYPE 
            12            477 
  SCLY MUTATED SCLY WILD-TYPE 
            12            477 
[1] "CDK17 MUTATION ANALYSIS"
[1] 3
  CDK17 MUTATED CDK17 WILD-TYPE 
             11             478 
  CDK17 MUTATED CDK17 WILD-TYPE 
             11             478 
[1] "GOLPH3L MUTATION ANALYSIS"
[1] 3
  GOLPH3L MUTATED GOLPH3L WILD-TYPE 
                6               483 
  GOLPH3L MUTATED GOLPH3L WILD-TYPE 
                6               483 
[1] "GGTLC2 MUTATION ANALYSIS"
[1] 3
  GGTLC2 MUTATED GGTLC2 WILD-TYPE 
               7              482 
  GGTLC2 MUTATED GGTLC2 WILD-TYPE 
               7              482 
[1] "SYNCRIP MUTATION ANALYSIS"
[1] 3
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
               12               477 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
               12               477 
[1] "IFITM3 MUTATION ANALYSIS"
[1] 3
  IFITM3 MUTATED IFITM3 WILD-TYPE 
               8              481 
  IFITM3 MUTATED IFITM3 WILD-TYPE 
               8              481 
[1] "SMG1 MUTATION ANALYSIS"
[1] 3
  SMG1 MUTATED SMG1 WILD-TYPE 
            27            462 
  SMG1 MUTATED SMG1 WILD-TYPE 
            27            462 
[1] "RBL2 MUTATION ANALYSIS"
[1] 3
  RBL2 MUTATED RBL2 WILD-TYPE 
            23            466 
  RBL2 MUTATED RBL2 WILD-TYPE 
            23            466 
[1] "CASC1 MUTATION ANALYSIS"
[1] 3
  CASC1 MUTATED CASC1 WILD-TYPE 
             14             475 
  CASC1 MUTATED CASC1 WILD-TYPE 
             14             475 
[1] "LNX2 MUTATION ANALYSIS"
[1] 3
  LNX2 MUTATED LNX2 WILD-TYPE 
            18            471 
  LNX2 MUTATED LNX2 WILD-TYPE 
            18            471 
[1] "N4BP2 MUTATION ANALYSIS"
[1] 3
  N4BP2 MUTATED N4BP2 WILD-TYPE 
             27             462 
  N4BP2 MUTATED N4BP2 WILD-TYPE 
             27             462 
[1] "KRT14 MUTATION ANALYSIS"
[1] 3
  KRT14 MUTATED KRT14 WILD-TYPE 
              9             480 
  KRT14 MUTATED KRT14 WILD-TYPE 
              9             480 
[1] "LNPEP MUTATION ANALYSIS"
[1] 3
  LNPEP MUTATED LNPEP WILD-TYPE 
             19             470 
  LNPEP MUTATED LNPEP WILD-TYPE 
             19             470 
[1] "SP110 MUTATION ANALYSIS"
[1] 3
  SP110 MUTATED SP110 WILD-TYPE 
             10             479 
  SP110 MUTATED SP110 WILD-TYPE 
             10             479 
[1] "C5ORF34 MUTATION ANALYSIS"
[1] 3
  C5ORF34 MUTATED C5ORF34 WILD-TYPE 
               12               477 
  C5ORF34 MUTATED C5ORF34 WILD-TYPE 
               12               477 
[1] "ADORA3 MUTATION ANALYSIS"
[1] 3
  ADORA3 MUTATED ADORA3 WILD-TYPE 
              15              474 
  ADORA3 MUTATED ADORA3 WILD-TYPE 
              15              474 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              34              455 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              34              455 
[1] "OVGP1 MUTATION ANALYSIS"
[1] 3
  OVGP1 MUTATED OVGP1 WILD-TYPE 
             17             472 
  OVGP1 MUTATED OVGP1 WILD-TYPE 
             17             472 
[1] "GOLGB1 MUTATION ANALYSIS"
[1] 3
  GOLGB1 MUTATED GOLGB1 WILD-TYPE 
              42              447 
  GOLGB1 MUTATED GOLGB1 WILD-TYPE 
              42              447 
[1] "SYT1 MUTATION ANALYSIS"
[1] 3
  SYT1 MUTATED SYT1 WILD-TYPE 
            13            476 
  SYT1 MUTATED SYT1 WILD-TYPE 
            13            476 
[1] "UVRAG MUTATION ANALYSIS"
[1] 3
  UVRAG MUTATED UVRAG WILD-TYPE 
             11             478 
  UVRAG MUTATED UVRAG WILD-TYPE 
             11             478 
[1] "CLVS1 MUTATION ANALYSIS"
[1] 3
  CLVS1 MUTATED CLVS1 WILD-TYPE 
             12             477 
  CLVS1 MUTATED CLVS1 WILD-TYPE 
             12             477 
[1] "TTF1 MUTATION ANALYSIS"
[1] 3
  TTF1 MUTATED TTF1 WILD-TYPE 
            11            478 
  TTF1 MUTATED TTF1 WILD-TYPE 
            11            478 
[1] "FGFR1 MUTATION ANALYSIS"
[1] 3
  FGFR1 MUTATED FGFR1 WILD-TYPE 
             19             470 
  FGFR1 MUTATED FGFR1 WILD-TYPE 
             19             470 
[1] "OSMR MUTATION ANALYSIS"
[1] 3
  OSMR MUTATED OSMR WILD-TYPE 
            22            467 
  OSMR MUTATED OSMR WILD-TYPE 
            22            467 
[1] "LASS3 MUTATION ANALYSIS"
[1] 3
  LASS3 MUTATED LASS3 WILD-TYPE 
             17             472 
  LASS3 MUTATED LASS3 WILD-TYPE 
             17             472 
[1] "HGS MUTATION ANALYSIS"
[1] 3
  HGS MUTATED HGS WILD-TYPE 
           10           479 
  HGS MUTATED HGS WILD-TYPE 
           10           479 
[1] "PLEKHA6 MUTATION ANALYSIS"
[1] 3
  PLEKHA6 MUTATED PLEKHA6 WILD-TYPE 
               20               469 
  PLEKHA6 MUTATED PLEKHA6 WILD-TYPE 
               20               469 
[1] "MAP7D1 MUTATION ANALYSIS"
[1] 3
  MAP7D1 MUTATED MAP7D1 WILD-TYPE 
              15              474 
  MAP7D1 MUTATED MAP7D1 WILD-TYPE 
              15              474 
[1] "MPO MUTATION ANALYSIS"
[1] 3
  MPO MUTATED MPO WILD-TYPE 
           16           473 
  MPO MUTATED MPO WILD-TYPE 
           16           473 
[1] "WBP11 MUTATION ANALYSIS"
[1] 3
  WBP11 MUTATED WBP11 WILD-TYPE 
              8             481 
  WBP11 MUTATED WBP11 WILD-TYPE 
              8             481 
[1] "RASA2 MUTATION ANALYSIS"
[1] 3
  RASA2 MUTATED RASA2 WILD-TYPE 
             17             472 
  RASA2 MUTATED RASA2 WILD-TYPE 
             17             472 
[1] "PLCH2 MUTATION ANALYSIS"
[1] 3
  PLCH2 MUTATED PLCH2 WILD-TYPE 
             19             470 
  PLCH2 MUTATED PLCH2 WILD-TYPE 
             19             470 
[1] "C1ORF59 MUTATION ANALYSIS"
[1] 3
  C1ORF59 MUTATED C1ORF59 WILD-TYPE 
               10               479 
  C1ORF59 MUTATED C1ORF59 WILD-TYPE 
               10               479 
[1] "MEPE MUTATION ANALYSIS"
[1] 3
  MEPE MUTATED MEPE WILD-TYPE 
            18            471 
  MEPE MUTATED MEPE WILD-TYPE 
            18            471 
[1] "RNASEL MUTATION ANALYSIS"
[1] 3
  RNASEL MUTATED RNASEL WILD-TYPE 
              14              475 
  RNASEL MUTATED RNASEL WILD-TYPE 
              14              475 
[1] "ESCO2 MUTATION ANALYSIS"
[1] 3
  ESCO2 MUTATED ESCO2 WILD-TYPE 
             14             475 
  ESCO2 MUTATED ESCO2 WILD-TYPE 
             14             475 
[1] "CCDC88A MUTATION ANALYSIS"
[1] 3
  CCDC88A MUTATED CCDC88A WILD-TYPE 
               36               453 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
               36               453 
[1] "ATP8B1 MUTATION ANALYSIS"
[1] 3
  ATP8B1 MUTATED ATP8B1 WILD-TYPE 
              28              461 
  ATP8B1 MUTATED ATP8B1 WILD-TYPE 
              28              461 
[1] "LAMC1 MUTATION ANALYSIS"
[1] 3
  LAMC1 MUTATED LAMC1 WILD-TYPE 
             23             466 
  LAMC1 MUTATED LAMC1 WILD-TYPE 
             23             466 
[1] "SLFN12L MUTATION ANALYSIS"
[1] 3
  SLFN12L MUTATED SLFN12L WILD-TYPE 
                8               481 
  SLFN12L MUTATED SLFN12L WILD-TYPE 
                8               481 
[1] "PLXNA3 MUTATION ANALYSIS"
[1] 3
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
              19              470 
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
              19              470 
[1] "ITGAV MUTATION ANALYSIS"
[1] 3
  ITGAV MUTATED ITGAV WILD-TYPE 
             17             472 
  ITGAV MUTATED ITGAV WILD-TYPE 
             17             472 
[1] "TAF12 MUTATION ANALYSIS"
[1] 3
  TAF12 MUTATED TAF12 WILD-TYPE 
              4             485 
  TAF12 MUTATED TAF12 WILD-TYPE 
              4             485 
[1] "ZNF473 MUTATION ANALYSIS"
[1] 3
  ZNF473 MUTATED ZNF473 WILD-TYPE 
              16              473 
  ZNF473 MUTATED ZNF473 WILD-TYPE 
              16              473 
[1] "ENPP3 MUTATION ANALYSIS"
[1] 3
  ENPP3 MUTATED ENPP3 WILD-TYPE 
             11             478 
  ENPP3 MUTATED ENPP3 WILD-TYPE 
             11             478 
[1] "OR4N4 MUTATION ANALYSIS"
[1] 3
  OR4N4 MUTATED OR4N4 WILD-TYPE 
             18             471 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
             18             471 
[1] "CHEK2 MUTATION ANALYSIS"
[1] 3
  CHEK2 MUTATED CHEK2 WILD-TYPE 
             10             479 
  CHEK2 MUTATED CHEK2 WILD-TYPE 
             10             479 
[1] "GTF2IRD2 MUTATION ANALYSIS"
[1] 3
  GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE 
                 6                483 
  GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE 
                 6                483 
[1] "AKAP9 MUTATION ANALYSIS"
[1] 3
  AKAP9 MUTATED AKAP9 WILD-TYPE 
             50             439 
  AKAP9 MUTATED AKAP9 WILD-TYPE 
             50             439 
[1] "ABI3BP MUTATION ANALYSIS"
[1] 3
  ABI3BP MUTATED ABI3BP WILD-TYPE 
              23              466 
  ABI3BP MUTATED ABI3BP WILD-TYPE 
              23              466 
[1] "ENTPD4 MUTATION ANALYSIS"
[1] 3
  ENTPD4 MUTATED ENTPD4 WILD-TYPE 
              18              471 
  ENTPD4 MUTATED ENTPD4 WILD-TYPE 
              18              471 
[1] "HFE2 MUTATION ANALYSIS"
[1] 3
  HFE2 MUTATED HFE2 WILD-TYPE 
            10            479 
  HFE2 MUTATED HFE2 WILD-TYPE 
            10            479 
[1] "SPCS2 MUTATION ANALYSIS"
[1] 3
  SPCS2 MUTATED SPCS2 WILD-TYPE 
              5             484 
  SPCS2 MUTATED SPCS2 WILD-TYPE 
              5             484 
[1] "RAD51AP2 MUTATION ANALYSIS"
[1] 3
  RAD51AP2 MUTATED RAD51AP2 WILD-TYPE 
                19                470 
  RAD51AP2 MUTATED RAD51AP2 WILD-TYPE 
                19                470 
[1] "BMPR1A MUTATION ANALYSIS"
[1] 3
  BMPR1A MUTATED BMPR1A WILD-TYPE 
              18              471 
  BMPR1A MUTATED BMPR1A WILD-TYPE 
              18              471 
[1] "MLL4 MUTATION ANALYSIS"
[1] 3
  MLL4 MUTATED MLL4 WILD-TYPE 
            39            450 
  MLL4 MUTATED MLL4 WILD-TYPE 
            39            450 
[1] "KIF21A MUTATION ANALYSIS"
[1] 3
  KIF21A MUTATED KIF21A WILD-TYPE 
              29              460 
  KIF21A MUTATED KIF21A WILD-TYPE 
              29              460 
[1] "ZNF286A MUTATION ANALYSIS"
[1] 3
  ZNF286A MUTATED ZNF286A WILD-TYPE 
                9               480 
  ZNF286A MUTATED ZNF286A WILD-TYPE 
                9               480 
[1] "AK3L1 MUTATION ANALYSIS"
[1] 3
  AK3L1 MUTATED AK3L1 WILD-TYPE 
              4             485 
  AK3L1 MUTATED AK3L1 WILD-TYPE 
              4             485 
[1] "PIK3C3 MUTATION ANALYSIS"
[1] 3
  PIK3C3 MUTATED PIK3C3 WILD-TYPE 
              26              463 
  PIK3C3 MUTATED PIK3C3 WILD-TYPE 
              26              463 
[1] "POLE MUTATION ANALYSIS"
[1] 3
  POLE MUTATED POLE WILD-TYPE 
            34            455 
  POLE MUTATED POLE WILD-TYPE 
            34            455 
[1] "PNP MUTATION ANALYSIS"
[1] 3
  PNP MUTATED PNP WILD-TYPE 
            4           485 
  PNP MUTATED PNP WILD-TYPE 
            4           485 
[1] "ZNF570 MUTATION ANALYSIS"
[1] 3
  ZNF570 MUTATED ZNF570 WILD-TYPE 
              11              478 
  ZNF570 MUTATED ZNF570 WILD-TYPE 
              11              478 
[1] "TNPO1 MUTATION ANALYSIS"
[1] 3
  TNPO1 MUTATED TNPO1 WILD-TYPE 
             17             472 
  TNPO1 MUTATED TNPO1 WILD-TYPE 
             17             472 
[1] "MAP9 MUTATION ANALYSIS"
[1] 3
  MAP9 MUTATED MAP9 WILD-TYPE 
            18            471 
  MAP9 MUTATED MAP9 WILD-TYPE 
            18            471 
[1] "ITPR1 MUTATION ANALYSIS"
[1] 3
  ITPR1 MUTATED ITPR1 WILD-TYPE 
             41             448 
  ITPR1 MUTATED ITPR1 WILD-TYPE 
             41             448 
[1] "NME7 MUTATION ANALYSIS"
[1] 3
  NME7 MUTATED NME7 WILD-TYPE 
             9            480 
  NME7 MUTATED NME7 WILD-TYPE 
             9            480 
[1] "TNFAIP3 MUTATION ANALYSIS"
[1] 3
  TNFAIP3 MUTATED TNFAIP3 WILD-TYPE 
               37               452 
  TNFAIP3 MUTATED TNFAIP3 WILD-TYPE 
               37               452 
[1] "DDX3X MUTATION ANALYSIS"
[1] 3
  DDX3X MUTATED DDX3X WILD-TYPE 
             10             479 
  DDX3X MUTATED DDX3X WILD-TYPE 
             10             479 
[1] "ETV1 MUTATION ANALYSIS"
[1] 3
  ETV1 MUTATED ETV1 WILD-TYPE 
            15            474 
  ETV1 MUTATED ETV1 WILD-TYPE 
            15            474 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              18              471 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              18              471 
[1] "RNF20 MUTATION ANALYSIS"
[1] 3
  RNF20 MUTATED RNF20 WILD-TYPE 
             21             468 
  RNF20 MUTATED RNF20 WILD-TYPE 
             21             468 
[1] "ATG2B MUTATION ANALYSIS"
[1] 3
  ATG2B MUTATED ATG2B WILD-TYPE 
             18             471 
  ATG2B MUTATED ATG2B WILD-TYPE 
             18             471 
[1] "FRY MUTATION ANALYSIS"
[1] 3
  FRY MUTATED FRY WILD-TYPE 
           41           448 
  FRY MUTATED FRY WILD-TYPE 
           41           448 
[1] "SCN2A MUTATION ANALYSIS"
[1] 3
  SCN2A MUTATED SCN2A WILD-TYPE 
             50             439 
  SCN2A MUTATED SCN2A WILD-TYPE 
             50             439 
[1] "ALK MUTATION ANALYSIS"
[1] 3
  ALK MUTATED ALK WILD-TYPE 
           40           449 
  ALK MUTATED ALK WILD-TYPE 
           40           449 
[1] "SP4 MUTATION ANALYSIS"
[1] 3
  SP4 MUTATED SP4 WILD-TYPE 
           12           477 
  SP4 MUTATED SP4 WILD-TYPE 
           12           477 
[1] "IQSEC2 MUTATION ANALYSIS"
[1] 3
  IQSEC2 MUTATED IQSEC2 WILD-TYPE 
              17              472 
  IQSEC2 MUTATED IQSEC2 WILD-TYPE 
              17              472 
[1] "PPP1R12B MUTATION ANALYSIS"
[1] 3
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                15                474 
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                15                474 
[1] "WWTR1 MUTATION ANALYSIS"
[1] 3
  WWTR1 MUTATED WWTR1 WILD-TYPE 
              7             482 
  WWTR1 MUTATED WWTR1 WILD-TYPE 
              7             482 
[1] "ABLIM3 MUTATION ANALYSIS"
[1] 3
  ABLIM3 MUTATED ABLIM3 WILD-TYPE 
              18              471 
  ABLIM3 MUTATED ABLIM3 WILD-TYPE 
              18              471 
[1] "SNTN MUTATION ANALYSIS"
[1] 3
  SNTN MUTATED SNTN WILD-TYPE 
             7            482 
  SNTN MUTATED SNTN WILD-TYPE 
             7            482 
[1] "DSG4 MUTATION ANALYSIS"
[1] 3
  DSG4 MUTATED DSG4 WILD-TYPE 
            24            465 
  DSG4 MUTATED DSG4 WILD-TYPE 
            24            465 
[1] "PCDH12 MUTATION ANALYSIS"
[1] 3
  PCDH12 MUTATED PCDH12 WILD-TYPE 
              20              469 
  PCDH12 MUTATED PCDH12 WILD-TYPE 
              20              469 
[1] "EAPP MUTATION ANALYSIS"
[1] 3
  EAPP MUTATED EAPP WILD-TYPE 
             6            483 
  EAPP MUTATED EAPP WILD-TYPE 
             6            483 
[1] "SLC7A10 MUTATION ANALYSIS"
[1] 3
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                8               481 
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                8               481 
[1] "ZNF711 MUTATION ANALYSIS"
[1] 3
  ZNF711 MUTATED ZNF711 WILD-TYPE 
              11              478 
  ZNF711 MUTATED ZNF711 WILD-TYPE 
              11              478 
[1] "REXO4 MUTATION ANALYSIS"
[1] 3
  REXO4 MUTATED REXO4 WILD-TYPE 
              5             484 
  REXO4 MUTATED REXO4 WILD-TYPE 
              5             484 
[1] "ABCB4 MUTATION ANALYSIS"
[1] 3
  ABCB4 MUTATED ABCB4 WILD-TYPE 
             27             462 
  ABCB4 MUTATED ABCB4 WILD-TYPE 
             27             462 
[1] "FAAH2 MUTATION ANALYSIS"
[1] 3
  FAAH2 MUTATED FAAH2 WILD-TYPE 
             14             475 
  FAAH2 MUTATED FAAH2 WILD-TYPE 
             14             475 
[1] "RASAL2 MUTATION ANALYSIS"
[1] 3
  RASAL2 MUTATED RASAL2 WILD-TYPE 
              16              473 
  RASAL2 MUTATED RASAL2 WILD-TYPE 
              16              473 
[1] "ATAD5 MUTATION ANALYSIS"
[1] 3
  ATAD5 MUTATED ATAD5 WILD-TYPE 
             25             464 
  ATAD5 MUTATED ATAD5 WILD-TYPE 
             25             464 
[1] "ZNF14 MUTATION ANALYSIS"
[1] 3
  ZNF14 MUTATED ZNF14 WILD-TYPE 
             14             475 
  ZNF14 MUTATED ZNF14 WILD-TYPE 
             14             475 
[1] "NAP1L1 MUTATION ANALYSIS"
[1] 3
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               9              480 
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               9              480 
[1] "CHRM3 MUTATION ANALYSIS"
[1] 3
  CHRM3 MUTATED CHRM3 WILD-TYPE 
             15             474 
  CHRM3 MUTATED CHRM3 WILD-TYPE 
             15             474 
[1] "GPR87 MUTATION ANALYSIS"
[1] 3
  GPR87 MUTATED GPR87 WILD-TYPE 
             11             478 
  GPR87 MUTATED GPR87 WILD-TYPE 
             11             478 
[1] "AKR1C4 MUTATION ANALYSIS"
[1] 3
  AKR1C4 MUTATED AKR1C4 WILD-TYPE 
              11              478 
  AKR1C4 MUTATED AKR1C4 WILD-TYPE 
              11              478 
[1] "E2F6 MUTATION ANALYSIS"
[1] 3
  E2F6 MUTATED E2F6 WILD-TYPE 
             4            485 
  E2F6 MUTATED E2F6 WILD-TYPE 
             4            485 
[1] "PRKCI MUTATION ANALYSIS"
[1] 3
  PRKCI MUTATED PRKCI WILD-TYPE 
             20             469 
  PRKCI MUTATED PRKCI WILD-TYPE 
             20             469 
[1] "SEC31A MUTATION ANALYSIS"
[1] 3
  SEC31A MUTATED SEC31A WILD-TYPE 
              15              474 
  SEC31A MUTATED SEC31A WILD-TYPE 
              15              474 
[1] "KIAA0319L MUTATION ANALYSIS"
[1] 3
  KIAA0319L MUTATED KIAA0319L WILD-TYPE 
                 20                 469 
  KIAA0319L MUTATED KIAA0319L WILD-TYPE 
                 20                 469 
[1] "BACE2 MUTATION ANALYSIS"
[1] 3
  BACE2 MUTATED BACE2 WILD-TYPE 
             11             478 
  BACE2 MUTATED BACE2 WILD-TYPE 
             11             478 
[1] "VAV2 MUTATION ANALYSIS"
[1] 3
  VAV2 MUTATED VAV2 WILD-TYPE 
            19            470 
  VAV2 MUTATED VAV2 WILD-TYPE 
            19            470 
[1] "GAB1 MUTATION ANALYSIS"
[1] 3
  GAB1 MUTATED GAB1 WILD-TYPE 
            15            474 
  GAB1 MUTATED GAB1 WILD-TYPE 
            15            474 
[1] "RPA3 MUTATION ANALYSIS"
[1] 3
  RPA3 MUTATED RPA3 WILD-TYPE 
             4            485 
  RPA3 MUTATED RPA3 WILD-TYPE 
             4            485 
[1] "GPR61 MUTATION ANALYSIS"
[1] 3
  GPR61 MUTATED GPR61 WILD-TYPE 
             12             477 
  GPR61 MUTATED GPR61 WILD-TYPE 
             12             477 
[1] "OAS1 MUTATION ANALYSIS"
[1] 3
  OAS1 MUTATED OAS1 WILD-TYPE 
             9            480 
  OAS1 MUTATED OAS1 WILD-TYPE 
             9            480 
[1] "OLR1 MUTATION ANALYSIS"
[1] 3
  OLR1 MUTATED OLR1 WILD-TYPE 
            10            479 
  OLR1 MUTATED OLR1 WILD-TYPE 
            10            479 
[1] "ELFN2 MUTATION ANALYSIS"
[1] 3
  ELFN2 MUTATED ELFN2 WILD-TYPE 
              9             480 
  ELFN2 MUTATED ELFN2 WILD-TYPE 
              9             480 
[1] "ANAPC4 MUTATION ANALYSIS"
[1] 3
  ANAPC4 MUTATED ANAPC4 WILD-TYPE 
              12              477 
  ANAPC4 MUTATED ANAPC4 WILD-TYPE 
              12              477 
[1] "ITGB8 MUTATION ANALYSIS"
[1] 3
  ITGB8 MUTATED ITGB8 WILD-TYPE 
             12             477 
  ITGB8 MUTATED ITGB8 WILD-TYPE 
             12             477 
[1] "PAXIP1 MUTATION ANALYSIS"
[1] 3
  PAXIP1 MUTATED PAXIP1 WILD-TYPE 
              20              469 
  PAXIP1 MUTATED PAXIP1 WILD-TYPE 
              20              469 
[1] "HIST1H1C MUTATION ANALYSIS"
[1] 3
  HIST1H1C MUTATED HIST1H1C WILD-TYPE 
                 4                485 
  HIST1H1C MUTATED HIST1H1C WILD-TYPE 
                 4                485 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              16              473 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              16              473 
[1] "IBTK MUTATION ANALYSIS"
[1] 3
  IBTK MUTATED IBTK WILD-TYPE 
            23            466 
  IBTK MUTATED IBTK WILD-TYPE 
            23            466 
[1] "RTP3 MUTATION ANALYSIS"
[1] 3
  RTP3 MUTATED RTP3 WILD-TYPE 
             5            484 
  RTP3 MUTATED RTP3 WILD-TYPE 
             5            484 
[1] "TAOK3 MUTATION ANALYSIS"
[1] 3
  TAOK3 MUTATED TAOK3 WILD-TYPE 
             20             469 
  TAOK3 MUTATED TAOK3 WILD-TYPE 
             20             469 
[1] "RAE1 MUTATION ANALYSIS"
[1] 3
  RAE1 MUTATED RAE1 WILD-TYPE 
             8            481 
  RAE1 MUTATED RAE1 WILD-TYPE 
             8            481 
[1] "KIF2C MUTATION ANALYSIS"
[1] 3
  KIF2C MUTATED KIF2C WILD-TYPE 
             12             477 
  KIF2C MUTATED KIF2C WILD-TYPE 
             12             477 
[1] "C7ORF58 MUTATION ANALYSIS"
[1] 3
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               26               463 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               26               463 
[1] "PVRL4 MUTATION ANALYSIS"
[1] 3
  PVRL4 MUTATED PVRL4 WILD-TYPE 
             10             479 
  PVRL4 MUTATED PVRL4 WILD-TYPE 
             10             479 
[1] "MTDH MUTATION ANALYSIS"
[1] 3
  MTDH MUTATED MTDH WILD-TYPE 
            13            476 
  MTDH MUTATED MTDH WILD-TYPE 
            13            476 
[1] "AIFM1 MUTATION ANALYSIS"
[1] 3
  AIFM1 MUTATED AIFM1 WILD-TYPE 
             13             476 
  AIFM1 MUTATED AIFM1 WILD-TYPE 
             13             476 
[1] "WNK4 MUTATION ANALYSIS"
[1] 3
  WNK4 MUTATED WNK4 WILD-TYPE 
            12            477 
  WNK4 MUTATED WNK4 WILD-TYPE 
            12            477 
[1] "POLM MUTATION ANALYSIS"
[1] 3
  POLM MUTATED POLM WILD-TYPE 
            12            477 
  POLM MUTATED POLM WILD-TYPE 
            12            477 
[1] "RCSD1 MUTATION ANALYSIS"
[1] 3
  RCSD1 MUTATED RCSD1 WILD-TYPE 
             16             473 
  RCSD1 MUTATED RCSD1 WILD-TYPE 
             16             473 
[1] "CSNK1D MUTATION ANALYSIS"
[1] 3
  CSNK1D MUTATED CSNK1D WILD-TYPE 
              15              474 
  CSNK1D MUTATED CSNK1D WILD-TYPE 
              15              474 
[1] "GPNMB MUTATION ANALYSIS"
[1] 3
  GPNMB MUTATED GPNMB WILD-TYPE 
             14             475 
  GPNMB MUTATED GPNMB WILD-TYPE 
             14             475 
[1] "ATP11C MUTATION ANALYSIS"
[1] 3
  ATP11C MUTATED ATP11C WILD-TYPE 
              29              460 
  ATP11C MUTATED ATP11C WILD-TYPE 
              29              460 
[1] "IQGAP1 MUTATION ANALYSIS"
[1] 3
  IQGAP1 MUTATED IQGAP1 WILD-TYPE 
              24              465 
  IQGAP1 MUTATED IQGAP1 WILD-TYPE 
              24              465 
[1] "TRMT5 MUTATION ANALYSIS"
[1] 3
  TRMT5 MUTATED TRMT5 WILD-TYPE 
              8             481 
  TRMT5 MUTATED TRMT5 WILD-TYPE 
              8             481 
[1] "MAP7D3 MUTATION ANALYSIS"
[1] 3
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              23              466 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              23              466 
[1] "BFAR MUTATION ANALYSIS"
[1] 3
  BFAR MUTATED BFAR WILD-TYPE 
             9            480 
  BFAR MUTATED BFAR WILD-TYPE 
             9            480 
[1] "KCTD16 MUTATION ANALYSIS"
[1] 3
  KCTD16 MUTATED KCTD16 WILD-TYPE 
              14              475 
  KCTD16 MUTATED KCTD16 WILD-TYPE 
              14              475 
[1] "MFN1 MUTATION ANALYSIS"
[1] 3
  MFN1 MUTATED MFN1 WILD-TYPE 
            14            475 
  MFN1 MUTATED MFN1 WILD-TYPE 
            14            475 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
            10            479 
  ELF3 MUTATED ELF3 WILD-TYPE 
            10            479 
[1] "TAPBP MUTATION ANALYSIS"
[1] 3
  TAPBP MUTATED TAPBP WILD-TYPE 
              5             484 
  TAPBP MUTATED TAPBP WILD-TYPE 
              5             484 
[1] "RBM19 MUTATION ANALYSIS"
[1] 3
  RBM19 MUTATED RBM19 WILD-TYPE 
             21             468 
  RBM19 MUTATED RBM19 WILD-TYPE 
             21             468 
[1] "MSH4 MUTATION ANALYSIS"
[1] 3
  MSH4 MUTATED MSH4 WILD-TYPE 
            15            474 
  MSH4 MUTATED MSH4 WILD-TYPE 
            15            474 
[1] "ADAMTS4 MUTATION ANALYSIS"
[1] 3
  ADAMTS4 MUTATED ADAMTS4 WILD-TYPE 
               18               471 
  ADAMTS4 MUTATED ADAMTS4 WILD-TYPE 
               18               471 
[1] "ASPM MUTATION ANALYSIS"
[1] 3
  ASPM MUTATED ASPM WILD-TYPE 
            47            442 
  ASPM MUTATED ASPM WILD-TYPE 
            47            442 
[1] "ZNF180 MUTATION ANALYSIS"
[1] 3
  ZNF180 MUTATED ZNF180 WILD-TYPE 
              18              471 
  ZNF180 MUTATED ZNF180 WILD-TYPE 
              18              471 
[1] "HYDIN MUTATION ANALYSIS"
[1] 3
  HYDIN MUTATED HYDIN WILD-TYPE 
             93             396 
  HYDIN MUTATED HYDIN WILD-TYPE 
             93             396 
[1] "NCOA3 MUTATION ANALYSIS"
[1] 3
  NCOA3 MUTATED NCOA3 WILD-TYPE 
             17             472 
  NCOA3 MUTATED NCOA3 WILD-TYPE 
             17             472 
[1] "ARMCX5 MUTATION ANALYSIS"
[1] 3
  ARMCX5 MUTATED ARMCX5 WILD-TYPE 
               8              481 
  ARMCX5 MUTATED ARMCX5 WILD-TYPE 
               8              481 
[1] "YLPM1 MUTATION ANALYSIS"
[1] 3
  YLPM1 MUTATED YLPM1 WILD-TYPE 
             24             465 
  YLPM1 MUTATED YLPM1 WILD-TYPE 
             24             465 
[1] "PLEK MUTATION ANALYSIS"
[1] 3
  PLEK MUTATED PLEK WILD-TYPE 
            14            475 
  PLEK MUTATED PLEK WILD-TYPE 
            14            475 
[1] "MST4 MUTATION ANALYSIS"
[1] 3
  MST4 MUTATED MST4 WILD-TYPE 
             8            481 
  MST4 MUTATED MST4 WILD-TYPE 
             8            481 
[1] "MYL1 MUTATION ANALYSIS"
[1] 3
  MYL1 MUTATED MYL1 WILD-TYPE 
             8            481 
  MYL1 MUTATED MYL1 WILD-TYPE 
             8            481 
[1] "ANKHD1 MUTATION ANALYSIS"
[1] 3
  ANKHD1 MUTATED ANKHD1 WILD-TYPE 
              34              455 
  ANKHD1 MUTATED ANKHD1 WILD-TYPE 
              34              455 
[1] "CEPT1 MUTATION ANALYSIS"
[1] 3
  CEPT1 MUTATED CEPT1 WILD-TYPE 
              6             483 
  CEPT1 MUTATED CEPT1 WILD-TYPE 
              6             483 
[1] "TNFRSF9 MUTATION ANALYSIS"
[1] 3
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
               10               479 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
               10               479 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
             23             466 
  KDM5C MUTATED KDM5C WILD-TYPE 
             23             466 
[1] "IFIT2 MUTATION ANALYSIS"
[1] 3
  IFIT2 MUTATED IFIT2 WILD-TYPE 
              8             481 
  IFIT2 MUTATED IFIT2 WILD-TYPE 
              8             481 
[1] "NUDCD1 MUTATION ANALYSIS"
[1] 3
  NUDCD1 MUTATED NUDCD1 WILD-TYPE 
              10              479 
  NUDCD1 MUTATED NUDCD1 WILD-TYPE 
              10              479 
[1] "RBPMS MUTATION ANALYSIS"
[1] 3
  RBPMS MUTATED RBPMS WILD-TYPE 
              4             485 
  RBPMS MUTATED RBPMS WILD-TYPE 
              4             485 
[1] "ZNF197 MUTATION ANALYSIS"
[1] 3
  ZNF197 MUTATED ZNF197 WILD-TYPE 
              12              477 
  ZNF197 MUTATED ZNF197 WILD-TYPE 
              12              477 
[1] "DOCK5 MUTATION ANALYSIS"
[1] 3
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             29             460 
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             29             460 
[1] "TNRC6C MUTATION ANALYSIS"
[1] 3
  TNRC6C MUTATED TNRC6C WILD-TYPE 
              20              469 
  TNRC6C MUTATED TNRC6C WILD-TYPE 
              20              469 
[1] "NIPA2 MUTATION ANALYSIS"
[1] 3
  NIPA2 MUTATED NIPA2 WILD-TYPE 
              8             481 
  NIPA2 MUTATED NIPA2 WILD-TYPE 
              8             481 
[1] "NSUN2 MUTATION ANALYSIS"
[1] 3
  NSUN2 MUTATED NSUN2 WILD-TYPE 
             12             477 
  NSUN2 MUTATED NSUN2 WILD-TYPE 
             12             477 
[1] "CYP4X1 MUTATION ANALYSIS"
[1] 3
  CYP4X1 MUTATED CYP4X1 WILD-TYPE 
               6              483 
  CYP4X1 MUTATED CYP4X1 WILD-TYPE 
               6              483 
[1] "C11ORF57 MUTATION ANALYSIS"
[1] 3
  C11ORF57 MUTATED C11ORF57 WILD-TYPE 
                11                478 
  C11ORF57 MUTATED C11ORF57 WILD-TYPE 
                11                478 
[1] "ZNF439 MUTATION ANALYSIS"
[1] 3
  ZNF439 MUTATED ZNF439 WILD-TYPE 
               5              484 
  ZNF439 MUTATED ZNF439 WILD-TYPE 
               5              484 
[1] "UBA3 MUTATION ANALYSIS"
[1] 3
  UBA3 MUTATED UBA3 WILD-TYPE 
             7            482 
  UBA3 MUTATED UBA3 WILD-TYPE 
             7            482 
[1] "KIAA0564 MUTATION ANALYSIS"
[1] 3
  KIAA0564 MUTATED KIAA0564 WILD-TYPE 
                25                464 
  KIAA0564 MUTATED KIAA0564 WILD-TYPE 
                25                464 
[1] "ATP8B2 MUTATION ANALYSIS"
[1] 3
  ATP8B2 MUTATED ATP8B2 WILD-TYPE 
              18              471 
  ATP8B2 MUTATED ATP8B2 WILD-TYPE 
              18              471 
[1] "PNPLA5 MUTATION ANALYSIS"
[1] 3
  PNPLA5 MUTATED PNPLA5 WILD-TYPE 
              12              477 
  PNPLA5 MUTATED PNPLA5 WILD-TYPE 
              12              477 
[1] "VPS13B MUTATION ANALYSIS"
[1] 3
  VPS13B MUTATED VPS13B WILD-TYPE 
              60              429 
  VPS13B MUTATED VPS13B WILD-TYPE 
              60              429 
[1] "GPR22 MUTATION ANALYSIS"
[1] 3
  GPR22 MUTATED GPR22 WILD-TYPE 
              9             480 
  GPR22 MUTATED GPR22 WILD-TYPE 
              9             480 
[1] "LRP6 MUTATION ANALYSIS"
[1] 3
  LRP6 MUTATED LRP6 WILD-TYPE 
            27            462 
  LRP6 MUTATED LRP6 WILD-TYPE 
            27            462 
[1] "EFHC1 MUTATION ANALYSIS"
[1] 3
  EFHC1 MUTATED EFHC1 WILD-TYPE 
             13             476 
  EFHC1 MUTATED EFHC1 WILD-TYPE 
             13             476 
[1] "CDC7 MUTATION ANALYSIS"
[1] 3
  CDC7 MUTATED CDC7 WILD-TYPE 
            12            477 
  CDC7 MUTATED CDC7 WILD-TYPE 
            12            477 
[1] "ATP5J2 MUTATION ANALYSIS"
[1] 3
  ATP5J2 MUTATED ATP5J2 WILD-TYPE 
               5              484 
  ATP5J2 MUTATED ATP5J2 WILD-TYPE 
               5              484 
[1] "ADH1B MUTATION ANALYSIS"
[1] 3
  ADH1B MUTATED ADH1B WILD-TYPE 
             10             479 
  ADH1B MUTATED ADH1B WILD-TYPE 
             10             479 
[1] "PARP12 MUTATION ANALYSIS"
[1] 3
  PARP12 MUTATED PARP12 WILD-TYPE 
              11              478 
  PARP12 MUTATED PARP12 WILD-TYPE 
              11              478 
[1] "CD101 MUTATION ANALYSIS"
[1] 3
  CD101 MUTATED CD101 WILD-TYPE 
             11             478 
  CD101 MUTATED CD101 WILD-TYPE 
             11             478 
[1] "PTPRC MUTATION ANALYSIS"
[1] 3
  PTPRC MUTATED PTPRC WILD-TYPE 
             29             460 
  PTPRC MUTATED PTPRC WILD-TYPE 
             29             460 
[1] "RIF1 MUTATION ANALYSIS"
[1] 3
  RIF1 MUTATED RIF1 WILD-TYPE 
            41            448 
  RIF1 MUTATED RIF1 WILD-TYPE 
            41            448 
[1] "LAS1L MUTATION ANALYSIS"
[1] 3
  LAS1L MUTATED LAS1L WILD-TYPE 
             11             478 
  LAS1L MUTATED LAS1L WILD-TYPE 
             11             478 
[1] "HSD17B11 MUTATION ANALYSIS"
[1] 3
  HSD17B11 MUTATED HSD17B11 WILD-TYPE 
                 5                484 
  HSD17B11 MUTATED HSD17B11 WILD-TYPE 
                 5                484 
[1] "RHEB MUTATION ANALYSIS"
[1] 3
  RHEB MUTATED RHEB WILD-TYPE 
             5            484 
  RHEB MUTATED RHEB WILD-TYPE 
             5            484 
[1] "KIAA0406 MUTATION ANALYSIS"
[1] 3
  KIAA0406 MUTATED KIAA0406 WILD-TYPE 
                15                474 
  KIAA0406 MUTATED KIAA0406 WILD-TYPE 
                15                474 
[1] "LRRC23 MUTATION ANALYSIS"
[1] 3
  LRRC23 MUTATED LRRC23 WILD-TYPE 
               9              480 
  LRRC23 MUTATED LRRC23 WILD-TYPE 
               9              480 
[1] "FAM179A MUTATION ANALYSIS"
[1] 3
  FAM179A MUTATED FAM179A WILD-TYPE 
               29               460 
  FAM179A MUTATED FAM179A WILD-TYPE 
               29               460 
[1] "OR2V2 MUTATION ANALYSIS"
[1] 3
  OR2V2 MUTATED OR2V2 WILD-TYPE 
              6             483 
  OR2V2 MUTATED OR2V2 WILD-TYPE 
              6             483 
[1] "WNK1 MUTATION ANALYSIS"
[1] 3
  WNK1 MUTATED WNK1 WILD-TYPE 
            22            467 
  WNK1 MUTATED WNK1 WILD-TYPE 
            22            467 
[1] "FRS3 MUTATION ANALYSIS"
[1] 3
  FRS3 MUTATED FRS3 WILD-TYPE 
            12            477 
  FRS3 MUTATED FRS3 WILD-TYPE 
            12            477 
[1] "EEF1D MUTATION ANALYSIS"
[1] 3
  EEF1D MUTATED EEF1D WILD-TYPE 
             12             477 
  EEF1D MUTATED EEF1D WILD-TYPE 
             12             477 
[1] "DOCK10 MUTATION ANALYSIS"
[1] 3
  DOCK10 MUTATED DOCK10 WILD-TYPE 
              28              461 
  DOCK10 MUTATED DOCK10 WILD-TYPE 
              28              461 
[1] "EXOC4 MUTATION ANALYSIS"
[1] 3
  EXOC4 MUTATED EXOC4 WILD-TYPE 
             20             469 
  EXOC4 MUTATED EXOC4 WILD-TYPE 
             20             469 
[1] "CEACAM1 MUTATION ANALYSIS"
[1] 3
  CEACAM1 MUTATED CEACAM1 WILD-TYPE 
                5               484 
  CEACAM1 MUTATED CEACAM1 WILD-TYPE 
                5               484 
[1] "EIF5B MUTATION ANALYSIS"
[1] 3
  EIF5B MUTATED EIF5B WILD-TYPE 
             16             473 
  EIF5B MUTATED EIF5B WILD-TYPE 
             16             473 
[1] "PRAMEF12 MUTATION ANALYSIS"
[1] 3
  PRAMEF12 MUTATED PRAMEF12 WILD-TYPE 
                 7                482 
  PRAMEF12 MUTATED PRAMEF12 WILD-TYPE 
                 7                482 
[1] "SF1 MUTATION ANALYSIS"
[1] 3
  SF1 MUTATED SF1 WILD-TYPE 
           16           473 
  SF1 MUTATED SF1 WILD-TYPE 
           16           473 
[1] "BTNL3 MUTATION ANALYSIS"
[1] 3
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              8             481 
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              8             481 
[1] "EFCAB1 MUTATION ANALYSIS"
[1] 3
  EFCAB1 MUTATED EFCAB1 WILD-TYPE 
               5              484 
  EFCAB1 MUTATED EFCAB1 WILD-TYPE 
               5              484 
[1] "IKZF4 MUTATION ANALYSIS"
[1] 3
  IKZF4 MUTATED IKZF4 WILD-TYPE 
             13             476 
  IKZF4 MUTATED IKZF4 WILD-TYPE 
             13             476 
[1] "ZNF564 MUTATION ANALYSIS"
[1] 3
  ZNF564 MUTATED ZNF564 WILD-TYPE 
              12              477 
  ZNF564 MUTATED ZNF564 WILD-TYPE 
              12              477 
[1] "SLC46A3 MUTATION ANALYSIS"
[1] 3
  SLC46A3 MUTATED SLC46A3 WILD-TYPE 
                9               480 
  SLC46A3 MUTATED SLC46A3 WILD-TYPE 
                9               480 
[1] "VAV3 MUTATION ANALYSIS"
[1] 3
  VAV3 MUTATED VAV3 WILD-TYPE 
            27            462 
  VAV3 MUTATED VAV3 WILD-TYPE 
            27            462 
[1] "RPGRIP1L MUTATION ANALYSIS"
[1] 3
  RPGRIP1L MUTATED RPGRIP1L WILD-TYPE 
                18                471 
  RPGRIP1L MUTATED RPGRIP1L WILD-TYPE 
                18                471 
[1] "GATA1 MUTATION ANALYSIS"
[1] 3
  GATA1 MUTATED GATA1 WILD-TYPE 
             17             472 
  GATA1 MUTATED GATA1 WILD-TYPE 
             17             472 
[1] "KIF21B MUTATION ANALYSIS"
[1] 3
  KIF21B MUTATED KIF21B WILD-TYPE 
              25              464 
  KIF21B MUTATED KIF21B WILD-TYPE 
              25              464 
[1] "HELQ MUTATION ANALYSIS"
[1] 3
  HELQ MUTATED HELQ WILD-TYPE 
            20            469 
  HELQ MUTATED HELQ WILD-TYPE 
            20            469 
[1] "ZNF799 MUTATION ANALYSIS"
[1] 3
  ZNF799 MUTATED ZNF799 WILD-TYPE 
               7              482 
  ZNF799 MUTATED ZNF799 WILD-TYPE 
               7              482 
[1] "CACHD1 MUTATION ANALYSIS"
[1] 3
  CACHD1 MUTATED CACHD1 WILD-TYPE 
              27              462 
  CACHD1 MUTATED CACHD1 WILD-TYPE 
              27              462 
[1] "CCDC93 MUTATION ANALYSIS"
[1] 3
  CCDC93 MUTATED CCDC93 WILD-TYPE 
              12              477 
  CCDC93 MUTATED CCDC93 WILD-TYPE 
              12              477 
[1] "SYNRG MUTATION ANALYSIS"
[1] 3
  SYNRG MUTATED SYNRG WILD-TYPE 
             18             471 
  SYNRG MUTATED SYNRG WILD-TYPE 
             18             471 
[1] "TRIM33 MUTATION ANALYSIS"
[1] 3
  TRIM33 MUTATED TRIM33 WILD-TYPE 
              20              469 
  TRIM33 MUTATED TRIM33 WILD-TYPE 
              20              469 
[1] "LPIN2 MUTATION ANALYSIS"
[1] 3
  LPIN2 MUTATED LPIN2 WILD-TYPE 
             10             479 
  LPIN2 MUTATED LPIN2 WILD-TYPE 
             10             479 
[1] "ING1 MUTATION ANALYSIS"
[1] 3
  ING1 MUTATED ING1 WILD-TYPE 
            12            477 
  ING1 MUTATED ING1 WILD-TYPE 
            12            477 
[1] "TAB3 MUTATION ANALYSIS"
[1] 3
  TAB3 MUTATED TAB3 WILD-TYPE 
            13            476 
  TAB3 MUTATED TAB3 WILD-TYPE 
            13            476 
[1] "ZFP3 MUTATION ANALYSIS"
[1] 3
  ZFP3 MUTATED ZFP3 WILD-TYPE 
            12            477 
  ZFP3 MUTATED ZFP3 WILD-TYPE 
            12            477 
[1] "ULK1 MUTATION ANALYSIS"
[1] 3
  ULK1 MUTATED ULK1 WILD-TYPE 
            11            478 
  ULK1 MUTATED ULK1 WILD-TYPE 
            11            478 
[1] "CLDN10 MUTATION ANALYSIS"
[1] 3
  CLDN10 MUTATED CLDN10 WILD-TYPE 
              13              476 
  CLDN10 MUTATED CLDN10 WILD-TYPE 
              13              476 
[1] "RHPN2 MUTATION ANALYSIS"
[1] 3
  RHPN2 MUTATED RHPN2 WILD-TYPE 
             18             471 
  RHPN2 MUTATED RHPN2 WILD-TYPE 
             18             471 
[1] "IL1RL1 MUTATION ANALYSIS"
[1] 3
  IL1RL1 MUTATED IL1RL1 WILD-TYPE 
              16              473 
  IL1RL1 MUTATED IL1RL1 WILD-TYPE 
              16              473 
[1] "TOX MUTATION ANALYSIS"
[1] 3
  TOX MUTATED TOX WILD-TYPE 
           18           471 
  TOX MUTATED TOX WILD-TYPE 
           18           471 
[1] "SNX2 MUTATION ANALYSIS"
[1] 3
  SNX2 MUTATED SNX2 WILD-TYPE 
            14            475 
  SNX2 MUTATED SNX2 WILD-TYPE 
            14            475 
[1] "HDAC5 MUTATION ANALYSIS"
[1] 3
  HDAC5 MUTATED HDAC5 WILD-TYPE 
             12             477 
  HDAC5 MUTATED HDAC5 WILD-TYPE 
             12             477 
[1] "IVNS1ABP MUTATION ANALYSIS"
[1] 3
  IVNS1ABP MUTATED IVNS1ABP WILD-TYPE 
                14                475 
  IVNS1ABP MUTATED IVNS1ABP WILD-TYPE 
                14                475 
[1] "SNRNP200 MUTATION ANALYSIS"
[1] 3
  SNRNP200 MUTATED SNRNP200 WILD-TYPE 
                23                466 
  SNRNP200 MUTATED SNRNP200 WILD-TYPE 
                23                466 
[1] "RFXAP MUTATION ANALYSIS"
[1] 3
  RFXAP MUTATED RFXAP WILD-TYPE 
              6             483 
  RFXAP MUTATED RFXAP WILD-TYPE 
              6             483 
[1] "ABCF3 MUTATION ANALYSIS"
[1] 3
  ABCF3 MUTATED ABCF3 WILD-TYPE 
             16             473 
  ABCF3 MUTATED ABCF3 WILD-TYPE 
             16             473 
[1] "ZMYM4 MUTATION ANALYSIS"
[1] 3
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
             19             470 
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
             19             470 
[1] "WWC3 MUTATION ANALYSIS"
[1] 3
  WWC3 MUTATED WWC3 WILD-TYPE 
            27            462 
  WWC3 MUTATED WWC3 WILD-TYPE 
            27            462 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
             11             478 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
             11             478 
[1] "GRM7 MUTATION ANALYSIS"
[1] 3
  GRM7 MUTATED GRM7 WILD-TYPE 
            30            459 
  GRM7 MUTATED GRM7 WILD-TYPE 
            30            459 
[1] "RANBP1 MUTATION ANALYSIS"
[1] 3
  RANBP1 MUTATED RANBP1 WILD-TYPE 
               6              483 
  RANBP1 MUTATED RANBP1 WILD-TYPE 
               6              483 
[1] "PAK7 MUTATION ANALYSIS"
[1] 3
  PAK7 MUTATED PAK7 WILD-TYPE 
            26            463 
  PAK7 MUTATED PAK7 WILD-TYPE 
            26            463 
[1] "LUM MUTATION ANALYSIS"
[1] 3
  LUM MUTATED LUM WILD-TYPE 
           14           475 
  LUM MUTATED LUM WILD-TYPE 
           14           475 
[1] "WDR66 MUTATION ANALYSIS"
[1] 3
  WDR66 MUTATED WDR66 WILD-TYPE 
             22             467 
  WDR66 MUTATED WDR66 WILD-TYPE 
             22             467 
[1] "IRAK3 MUTATION ANALYSIS"
[1] 3
  IRAK3 MUTATED IRAK3 WILD-TYPE 
              9             480 
  IRAK3 MUTATED IRAK3 WILD-TYPE 
              9             480 
[1] "SLC41A2 MUTATION ANALYSIS"
[1] 3
  SLC41A2 MUTATED SLC41A2 WILD-TYPE 
                9               480 
  SLC41A2 MUTATED SLC41A2 WILD-TYPE 
                9               480 
[1] "ING2 MUTATION ANALYSIS"
[1] 3
  ING2 MUTATED ING2 WILD-TYPE 
             7            482 
  ING2 MUTATED ING2 WILD-TYPE 
             7            482 
[1] "DNAJC11 MUTATION ANALYSIS"
[1] 3
  DNAJC11 MUTATED DNAJC11 WILD-TYPE 
               12               477 
  DNAJC11 MUTATED DNAJC11 WILD-TYPE 
               12               477 
[1] "CORO1C MUTATION ANALYSIS"
[1] 3
  CORO1C MUTATED CORO1C WILD-TYPE 
               8              481 
  CORO1C MUTATED CORO1C WILD-TYPE 
               8              481 
[1] "ATP6V1D MUTATION ANALYSIS"
[1] 3
  ATP6V1D MUTATED ATP6V1D WILD-TYPE 
                6               483 
  ATP6V1D MUTATED ATP6V1D WILD-TYPE 
                6               483 
[1] "WNK3 MUTATION ANALYSIS"
[1] 3
  WNK3 MUTATED WNK3 WILD-TYPE 
            32            457 
  WNK3 MUTATED WNK3 WILD-TYPE 
            32            457 
[1] "C1ORF168 MUTATION ANALYSIS"
[1] 3
  C1ORF168 MUTATED C1ORF168 WILD-TYPE 
                16                473 
  C1ORF168 MUTATED C1ORF168 WILD-TYPE 
                16                473 
[1] "VANGL1 MUTATION ANALYSIS"
[1] 3
  VANGL1 MUTATED VANGL1 WILD-TYPE 
              13              476 
  VANGL1 MUTATED VANGL1 WILD-TYPE 
              13              476 
[1] "SPANXC MUTATION ANALYSIS"
[1] 3
  SPANXC MUTATED SPANXC WILD-TYPE 
               4              485 
  SPANXC MUTATED SPANXC WILD-TYPE 
               4              485 
[1] "KLKB1 MUTATION ANALYSIS"
[1] 3
  KLKB1 MUTATED KLKB1 WILD-TYPE 
             15             474 
  KLKB1 MUTATED KLKB1 WILD-TYPE 
             15             474 
[1] "SV2A MUTATION ANALYSIS"
[1] 3
  SV2A MUTATED SV2A WILD-TYPE 
            23            466 
  SV2A MUTATED SV2A WILD-TYPE 
            23            466 
[1] "POLA1 MUTATION ANALYSIS"
[1] 3
  POLA1 MUTATED POLA1 WILD-TYPE 
             14             475 
  POLA1 MUTATED POLA1 WILD-TYPE 
             14             475 
[1] "RAB40C MUTATION ANALYSIS"
[1] 3
  RAB40C MUTATED RAB40C WILD-TYPE 
               8              481 
  RAB40C MUTATED RAB40C WILD-TYPE 
               8              481 
[1] "DHX35 MUTATION ANALYSIS"
[1] 3
  DHX35 MUTATED DHX35 WILD-TYPE 
             13             476 
  DHX35 MUTATED DHX35 WILD-TYPE 
             13             476 
[1] "SLC25A13 MUTATION ANALYSIS"
[1] 3
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                17                472 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                17                472 
[1] "FAM26E MUTATION ANALYSIS"
[1] 3
  FAM26E MUTATED FAM26E WILD-TYPE 
               5              484 
  FAM26E MUTATED FAM26E WILD-TYPE 
               5              484 
[1] "SAFB MUTATION ANALYSIS"
[1] 3
  SAFB MUTATED SAFB WILD-TYPE 
            16            473 
  SAFB MUTATED SAFB WILD-TYPE 
            16            473 
[1] "YES1 MUTATION ANALYSIS"
[1] 3
  YES1 MUTATED YES1 WILD-TYPE 
            10            479 
  YES1 MUTATED YES1 WILD-TYPE 
            10            479 
[1] "ACTL8 MUTATION ANALYSIS"
[1] 3
  ACTL8 MUTATED ACTL8 WILD-TYPE 
              9             480 
  ACTL8 MUTATED ACTL8 WILD-TYPE 
              9             480 
[1] "CNTFR MUTATION ANALYSIS"
[1] 3
  CNTFR MUTATED CNTFR WILD-TYPE 
             10             479 
  CNTFR MUTATED CNTFR WILD-TYPE 
             10             479 
[1] "OR4E2 MUTATION ANALYSIS"
[1] 3
  OR4E2 MUTATED OR4E2 WILD-TYPE 
              5             484 
  OR4E2 MUTATED OR4E2 WILD-TYPE 
              5             484 
[1] "PPP1R12A MUTATION ANALYSIS"
[1] 3
  PPP1R12A MUTATED PPP1R12A WILD-TYPE 
                16                473 
  PPP1R12A MUTATED PPP1R12A WILD-TYPE 
                16                473 
[1] "ZNF721 MUTATION ANALYSIS"
[1] 3
  ZNF721 MUTATED ZNF721 WILD-TYPE 
              17              472 
  ZNF721 MUTATED ZNF721 WILD-TYPE 
              17              472 
[1] "KIFAP3 MUTATION ANALYSIS"
[1] 3
  KIFAP3 MUTATED KIFAP3 WILD-TYPE 
               9              480 
  KIFAP3 MUTATED KIFAP3 WILD-TYPE 
               9              480 
[1] "SLC22A9 MUTATION ANALYSIS"
[1] 3
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
               10               479 
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
               10               479 
[1] "C5ORF22 MUTATION ANALYSIS"
[1] 3
  C5ORF22 MUTATED C5ORF22 WILD-TYPE 
               11               478 
  C5ORF22 MUTATED C5ORF22 WILD-TYPE 
               11               478 
[1] "FOXN3 MUTATION ANALYSIS"
[1] 3
  FOXN3 MUTATED FOXN3 WILD-TYPE 
             11             478 
  FOXN3 MUTATED FOXN3 WILD-TYPE 
             11             478 
[1] "IL2RG MUTATION ANALYSIS"
[1] 3
  IL2RG MUTATED IL2RG WILD-TYPE 
              8             481 
  IL2RG MUTATED IL2RG WILD-TYPE 
              8             481 
[1] "CARD6 MUTATION ANALYSIS"
[1] 3
  CARD6 MUTATED CARD6 WILD-TYPE 
             18             471 
  CARD6 MUTATED CARD6 WILD-TYPE 
             18             471 
[1] "BAZ2B MUTATION ANALYSIS"
[1] 3
  BAZ2B MUTATED BAZ2B WILD-TYPE 
             19             470 
  BAZ2B MUTATED BAZ2B WILD-TYPE 
             19             470 
[1] "ZNF384 MUTATION ANALYSIS"
[1] 3
  ZNF384 MUTATED ZNF384 WILD-TYPE 
               9              480 
  ZNF384 MUTATED ZNF384 WILD-TYPE 
               9              480 
[1] "MORC2 MUTATION ANALYSIS"
[1] 3
  MORC2 MUTATED MORC2 WILD-TYPE 
             14             475 
  MORC2 MUTATED MORC2 WILD-TYPE 
             14             475 
[1] "OTX2 MUTATION ANALYSIS"
[1] 3
  OTX2 MUTATED OTX2 WILD-TYPE 
             8            481 
  OTX2 MUTATED OTX2 WILD-TYPE 
             8            481 
[1] "CYP4A22 MUTATION ANALYSIS"
[1] 3
  CYP4A22 MUTATED CYP4A22 WILD-TYPE 
               13               476 
  CYP4A22 MUTATED CYP4A22 WILD-TYPE 
               13               476 
[1] "C14ORF102 MUTATION ANALYSIS"
[1] 3
  C14ORF102 MUTATED C14ORF102 WILD-TYPE 
                 19                 470 
  C14ORF102 MUTATED C14ORF102 WILD-TYPE 
                 19                 470 
[1] "LPGAT1 MUTATION ANALYSIS"
[1] 3
  LPGAT1 MUTATED LPGAT1 WILD-TYPE 
               4              485 
  LPGAT1 MUTATED LPGAT1 WILD-TYPE 
               4              485 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              33              456 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              33              456 
[1] "EEA1 MUTATION ANALYSIS"
[1] 3
  EEA1 MUTATED EEA1 WILD-TYPE 
            16            473 
  EEA1 MUTATED EEA1 WILD-TYPE 
            16            473 
[1] "ADAM22 MUTATION ANALYSIS"
[1] 3
  ADAM22 MUTATED ADAM22 WILD-TYPE 
              11              478 
  ADAM22 MUTATED ADAM22 WILD-TYPE 
              11              478 
[1] "DDB1 MUTATION ANALYSIS"
[1] 3
  DDB1 MUTATED DDB1 WILD-TYPE 
            15            474 
  DDB1 MUTATED DDB1 WILD-TYPE 
            15            474 
[1] "GLI2 MUTATION ANALYSIS"
[1] 3
  GLI2 MUTATED GLI2 WILD-TYPE 
            26            463 
  GLI2 MUTATED GLI2 WILD-TYPE 
            26            463 
[1] "ADAM30 MUTATION ANALYSIS"
[1] 3
  ADAM30 MUTATED ADAM30 WILD-TYPE 
              13              476 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
              13              476 
[1] "RGS22 MUTATION ANALYSIS"
[1] 3
  RGS22 MUTATED RGS22 WILD-TYPE 
             27             462 
  RGS22 MUTATED RGS22 WILD-TYPE 
             27             462 
[1] "PPP1R3A MUTATION ANALYSIS"
[1] 3
  PPP1R3A MUTATED PPP1R3A WILD-TYPE 
               38               451 
  PPP1R3A MUTATED PPP1R3A WILD-TYPE 
               38               451 
[1] "CCR2 MUTATION ANALYSIS"
[1] 3
  CCR2 MUTATED CCR2 WILD-TYPE 
             7            482 
  CCR2 MUTATED CCR2 WILD-TYPE 
             7            482 
[1] "OR4D2 MUTATION ANALYSIS"
[1] 3
  OR4D2 MUTATED OR4D2 WILD-TYPE 
              4             485 
  OR4D2 MUTATED OR4D2 WILD-TYPE 
              4             485 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             16             473 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             16             473 
[1] "EYS MUTATION ANALYSIS"
[1] 3
  EYS MUTATED EYS WILD-TYPE 
           41           448 
  EYS MUTATED EYS WILD-TYPE 
           41           448 
[1] "ARNT2 MUTATION ANALYSIS"
[1] 3
  ARNT2 MUTATED ARNT2 WILD-TYPE 
             14             475 
  ARNT2 MUTATED ARNT2 WILD-TYPE 
             14             475 
[1] "NIPBL MUTATION ANALYSIS"
[1] 3
  NIPBL MUTATED NIPBL WILD-TYPE 
             37             452 
  NIPBL MUTATED NIPBL WILD-TYPE 
             37             452 
[1] "G2E3 MUTATION ANALYSIS"
[1] 3
  G2E3 MUTATED G2E3 WILD-TYPE 
            15            474 
  G2E3 MUTATED G2E3 WILD-TYPE 
            15            474 
[1] "NOS3 MUTATION ANALYSIS"
[1] 3
  NOS3 MUTATED NOS3 WILD-TYPE 
            20            469 
  NOS3 MUTATED NOS3 WILD-TYPE 
            20            469 
[1] "EFEMP1 MUTATION ANALYSIS"
[1] 3
  EFEMP1 MUTATED EFEMP1 WILD-TYPE 
              20              469 
  EFEMP1 MUTATED EFEMP1 WILD-TYPE 
              20              469 
[1] "SPANXN2 MUTATION ANALYSIS"
[1] 3
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                8               481 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                8               481 
[1] "RPS6KA3 MUTATION ANALYSIS"
[1] 3
  RPS6KA3 MUTATED RPS6KA3 WILD-TYPE 
               16               473 
  RPS6KA3 MUTATED RPS6KA3 WILD-TYPE 
               16               473 
[1] "ICOSLG MUTATION ANALYSIS"
[1] 3
  ICOSLG MUTATED ICOSLG WILD-TYPE 
               5              484 
  ICOSLG MUTATED ICOSLG WILD-TYPE 
               5              484 
[1] "PPIG MUTATION ANALYSIS"
[1] 3
  PPIG MUTATED PPIG WILD-TYPE 
            15            474 
  PPIG MUTATED PPIG WILD-TYPE 
            15            474 
[1] "PTPRN MUTATION ANALYSIS"
[1] 3
  PTPRN MUTATED PTPRN WILD-TYPE 
             17             472 
  PTPRN MUTATED PTPRN WILD-TYPE 
             17             472 
[1] "THOC6 MUTATION ANALYSIS"
[1] 3
  THOC6 MUTATED THOC6 WILD-TYPE 
              8             481 
  THOC6 MUTATED THOC6 WILD-TYPE 
              8             481 
[1] "HNRNPH3 MUTATION ANALYSIS"
[1] 3
  HNRNPH3 MUTATED HNRNPH3 WILD-TYPE 
                4               485 
  HNRNPH3 MUTATED HNRNPH3 WILD-TYPE 
                4               485 
[1] "FSHR MUTATION ANALYSIS"
[1] 3
  FSHR MUTATED FSHR WILD-TYPE 
            19            470 
  FSHR MUTATED FSHR WILD-TYPE 
            19            470 
[1] "HUWE1 MUTATION ANALYSIS"
[1] 3
  HUWE1 MUTATED HUWE1 WILD-TYPE 
             47             442 
  HUWE1 MUTATED HUWE1 WILD-TYPE 
             47             442 
[1] "EIF2B5 MUTATION ANALYSIS"
[1] 3
  EIF2B5 MUTATED EIF2B5 WILD-TYPE 
              16              473 
  EIF2B5 MUTATED EIF2B5 WILD-TYPE 
              16              473 
[1] "C14ORF118 MUTATION ANALYSIS"
[1] 3
  C14ORF118 MUTATED C14ORF118 WILD-TYPE 
                 10                 479 
  C14ORF118 MUTATED C14ORF118 WILD-TYPE 
                 10                 479 
[1] "USP9X MUTATION ANALYSIS"
[1] 3
  USP9X MUTATED USP9X WILD-TYPE 
             33             456 
  USP9X MUTATED USP9X WILD-TYPE 
             33             456 
[1] "SLC35A5 MUTATION ANALYSIS"
[1] 3
  SLC35A5 MUTATED SLC35A5 WILD-TYPE 
                8               481 
  SLC35A5 MUTATED SLC35A5 WILD-TYPE 
                8               481 
[1] "FAS MUTATION ANALYSIS"
[1] 3
  FAS MUTATED FAS WILD-TYPE 
            9           480 
  FAS MUTATED FAS WILD-TYPE 
            9           480 
[1] "PGM2 MUTATION ANALYSIS"
[1] 3
  PGM2 MUTATED PGM2 WILD-TYPE 
             4            485 
  PGM2 MUTATED PGM2 WILD-TYPE 
             4            485 
[1] "STX16 MUTATION ANALYSIS"
[1] 3
  STX16 MUTATED STX16 WILD-TYPE 
              7             482 
  STX16 MUTATED STX16 WILD-TYPE 
              7             482 
[1] "TJP1 MUTATION ANALYSIS"
[1] 3
  TJP1 MUTATED TJP1 WILD-TYPE 
            22            467 
  TJP1 MUTATED TJP1 WILD-TYPE 
            22            467 
[1] "INTS3 MUTATION ANALYSIS"
[1] 3
  INTS3 MUTATED INTS3 WILD-TYPE 
              8             481 
  INTS3 MUTATED INTS3 WILD-TYPE 
              8             481 
[1] "DBN1 MUTATION ANALYSIS"
[1] 3
  DBN1 MUTATED DBN1 WILD-TYPE 
            13            476 
  DBN1 MUTATED DBN1 WILD-TYPE 
            13            476 
[1] "MCCC1 MUTATION ANALYSIS"
[1] 3
  MCCC1 MUTATED MCCC1 WILD-TYPE 
             19             470 
  MCCC1 MUTATED MCCC1 WILD-TYPE 
             19             470 
[1] "ETF1 MUTATION ANALYSIS"
[1] 3
  ETF1 MUTATED ETF1 WILD-TYPE 
            12            477 
  ETF1 MUTATED ETF1 WILD-TYPE 
            12            477 
[1] "ALDOB MUTATION ANALYSIS"
[1] 3
  ALDOB MUTATED ALDOB WILD-TYPE 
             15             474 
  ALDOB MUTATED ALDOB WILD-TYPE 
             15             474 
[1] "TFEC MUTATION ANALYSIS"
[1] 3
  TFEC MUTATED TFEC WILD-TYPE 
            12            477 
  TFEC MUTATED TFEC WILD-TYPE 
            12            477 
[1] "NFATC3 MUTATION ANALYSIS"
[1] 3
  NFATC3 MUTATED NFATC3 WILD-TYPE 
              14              475 
  NFATC3 MUTATED NFATC3 WILD-TYPE 
              14              475 
[1] "ZNF83 MUTATION ANALYSIS"
[1] 3
  ZNF83 MUTATED ZNF83 WILD-TYPE 
             20             469 
  ZNF83 MUTATED ZNF83 WILD-TYPE 
             20             469 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
             16             473 
  CDC27 MUTATED CDC27 WILD-TYPE 
             16             473 
[1] "PAAF1 MUTATION ANALYSIS"
[1] 3
  PAAF1 MUTATED PAAF1 WILD-TYPE 
              6             483 
  PAAF1 MUTATED PAAF1 WILD-TYPE 
              6             483 
[1] "CD244 MUTATION ANALYSIS"
[1] 3
  CD244 MUTATED CD244 WILD-TYPE 
              7             482 
  CD244 MUTATED CD244 WILD-TYPE 
              7             482 
[1] "UAP1L1 MUTATION ANALYSIS"
[1] 3
  UAP1L1 MUTATED UAP1L1 WILD-TYPE 
               7              482 
  UAP1L1 MUTATED UAP1L1 WILD-TYPE 
               7              482 
[1] "FAM189B MUTATION ANALYSIS"
[1] 3
  FAM189B MUTATED FAM189B WILD-TYPE 
               13               476 
  FAM189B MUTATED FAM189B WILD-TYPE 
               13               476 
[1] "MIA3 MUTATION ANALYSIS"
[1] 3
  MIA3 MUTATED MIA3 WILD-TYPE 
            21            468 
  MIA3 MUTATED MIA3 WILD-TYPE 
            21            468 
[1] "EFHC2 MUTATION ANALYSIS"
[1] 3
  EFHC2 MUTATED EFHC2 WILD-TYPE 
             17             472 
  EFHC2 MUTATED EFHC2 WILD-TYPE 
             17             472 
[1] "PALLD MUTATION ANALYSIS"
[1] 3
  PALLD MUTATED PALLD WILD-TYPE 
             12             477 
  PALLD MUTATED PALLD WILD-TYPE 
             12             477 
[1] "C1QL3 MUTATION ANALYSIS"
[1] 3
  C1QL3 MUTATED C1QL3 WILD-TYPE 
              4             485 
  C1QL3 MUTATED C1QL3 WILD-TYPE 
              4             485 
[1] "SFRS18 MUTATION ANALYSIS"
[1] 3
  SFRS18 MUTATED SFRS18 WILD-TYPE 
              13              476 
  SFRS18 MUTATED SFRS18 WILD-TYPE 
              13              476 
[1] "TAT MUTATION ANALYSIS"
[1] 3
  TAT MUTATED TAT WILD-TYPE 
           15           474 
  TAT MUTATED TAT WILD-TYPE 
           15           474 
[1] "LRRC6 MUTATION ANALYSIS"
[1] 3
  LRRC6 MUTATED LRRC6 WILD-TYPE 
              4             485 
  LRRC6 MUTATED LRRC6 WILD-TYPE 
              4             485 
[1] "ADAM18 MUTATION ANALYSIS"
[1] 3
  ADAM18 MUTATED ADAM18 WILD-TYPE 
              23              466 
  ADAM18 MUTATED ADAM18 WILD-TYPE 
              23              466 
[1] "MRAS MUTATION ANALYSIS"
[1] 3
  MRAS MUTATED MRAS WILD-TYPE 
             4            485 
  MRAS MUTATED MRAS WILD-TYPE 
             4            485 
[1] "ADNP2 MUTATION ANALYSIS"
[1] 3
  ADNP2 MUTATED ADNP2 WILD-TYPE 
             17             472 
  ADNP2 MUTATED ADNP2 WILD-TYPE 
             17             472 
[1] "SLC22A16 MUTATION ANALYSIS"
[1] 3
  SLC22A16 MUTATED SLC22A16 WILD-TYPE 
                15                474 
  SLC22A16 MUTATED SLC22A16 WILD-TYPE 
                15                474 
[1] "GSS MUTATION ANALYSIS"
[1] 3
  GSS MUTATED GSS WILD-TYPE 
            9           480 
  GSS MUTATED GSS WILD-TYPE 
            9           480 
[1] "IGF2R MUTATION ANALYSIS"
[1] 3
  IGF2R MUTATED IGF2R WILD-TYPE 
             41             448 
  IGF2R MUTATED IGF2R WILD-TYPE 
             41             448 
[1] "OR51A4 MUTATION ANALYSIS"
[1] 3
  OR51A4 MUTATED OR51A4 WILD-TYPE 
               8              481 
  OR51A4 MUTATED OR51A4 WILD-TYPE 
               8              481 
[1] "CRYGA MUTATION ANALYSIS"
[1] 3
  CRYGA MUTATED CRYGA WILD-TYPE 
              5             484 
  CRYGA MUTATED CRYGA WILD-TYPE 
              5             484 
[1] "RNF10 MUTATION ANALYSIS"
[1] 3
  RNF10 MUTATED RNF10 WILD-TYPE 
             15             474 
  RNF10 MUTATED RNF10 WILD-TYPE 
             15             474 
[1] "NCAPD3 MUTATION ANALYSIS"
[1] 3
  NCAPD3 MUTATED NCAPD3 WILD-TYPE 
              26              463 
  NCAPD3 MUTATED NCAPD3 WILD-TYPE 
              26              463 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
            28            461 
  MTTP MUTATED MTTP WILD-TYPE 
            28            461 
[1] "HEPH MUTATION ANALYSIS"
[1] 3
  HEPH MUTATED HEPH WILD-TYPE 
            19            470 
  HEPH MUTATED HEPH WILD-TYPE 
            19            470 
[1] "MAP2 MUTATION ANALYSIS"
[1] 3
  MAP2 MUTATED MAP2 WILD-TYPE 
            43            446 
  MAP2 MUTATED MAP2 WILD-TYPE 
            43            446 
[1] "NOD2 MUTATION ANALYSIS"
[1] 3
  NOD2 MUTATED NOD2 WILD-TYPE 
            20            469 
  NOD2 MUTATED NOD2 WILD-TYPE 
            20            469 
[1] "RSPO2 MUTATION ANALYSIS"
[1] 3
  RSPO2 MUTATED RSPO2 WILD-TYPE 
             21             468 
  RSPO2 MUTATED RSPO2 WILD-TYPE 
             21             468 
[1] "PCDH20 MUTATION ANALYSIS"
[1] 3
  PCDH20 MUTATED PCDH20 WILD-TYPE 
              24              465 
  PCDH20 MUTATED PCDH20 WILD-TYPE 
              24              465 
[1] "OR5H15 MUTATION ANALYSIS"
[1] 3
  OR5H15 MUTATED OR5H15 WILD-TYPE 
               7              482 
  OR5H15 MUTATED OR5H15 WILD-TYPE 
               7              482 
[1] "ACTL6B MUTATION ANALYSIS"
[1] 3
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               9              480 
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               9              480 
[1] "ZNF167 MUTATION ANALYSIS"
[1] 3
  ZNF167 MUTATED ZNF167 WILD-TYPE 
              18              471 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
              18              471 
[1] "LPAR6 MUTATION ANALYSIS"
[1] 3
  LPAR6 MUTATED LPAR6 WILD-TYPE 
              8             481 
  LPAR6 MUTATED LPAR6 WILD-TYPE 
              8             481 
[1] "EIF4G2 MUTATION ANALYSIS"
[1] 3
  EIF4G2 MUTATED EIF4G2 WILD-TYPE 
              15              474 
  EIF4G2 MUTATED EIF4G2 WILD-TYPE 
              15              474 
[1] "PDP2 MUTATION ANALYSIS"
[1] 3
  PDP2 MUTATED PDP2 WILD-TYPE 
             6            483 
  PDP2 MUTATED PDP2 WILD-TYPE 
             6            483 
[1] "C4ORF49 MUTATION ANALYSIS"
[1] 3
  C4ORF49 MUTATED C4ORF49 WILD-TYPE 
                5               484 
  C4ORF49 MUTATED C4ORF49 WILD-TYPE 
                5               484 
[1] "KLRC3 MUTATION ANALYSIS"
[1] 3
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              6             483 
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              6             483 
[1] "RARS2 MUTATION ANALYSIS"
[1] 3
  RARS2 MUTATED RARS2 WILD-TYPE 
             10             479 
  RARS2 MUTATED RARS2 WILD-TYPE 
             10             479 
[1] "OR5K2 MUTATION ANALYSIS"
[1] 3
  OR5K2 MUTATED OR5K2 WILD-TYPE 
             11             478 
  OR5K2 MUTATED OR5K2 WILD-TYPE 
             11             478 
[1] "GABRP MUTATION ANALYSIS"
[1] 3
  GABRP MUTATED GABRP WILD-TYPE 
             13             476 
  GABRP MUTATED GABRP WILD-TYPE 
             13             476 
[1] "CCT5 MUTATION ANALYSIS"
[1] 3
  CCT5 MUTATED CCT5 WILD-TYPE 
             8            481 
  CCT5 MUTATED CCT5 WILD-TYPE 
             8            481 
[1] "MRPS18B MUTATION ANALYSIS"
[1] 3
  MRPS18B MUTATED MRPS18B WILD-TYPE 
                5               484 
  MRPS18B MUTATED MRPS18B WILD-TYPE 
                5               484 
[1] "LEF1 MUTATION ANALYSIS"
[1] 3
  LEF1 MUTATED LEF1 WILD-TYPE 
             9            480 
  LEF1 MUTATED LEF1 WILD-TYPE 
             9            480 
[1] "CD55 MUTATION ANALYSIS"
[1] 3
  CD55 MUTATED CD55 WILD-TYPE 
             8            481 
  CD55 MUTATED CD55 WILD-TYPE 
             8            481 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
           23           466 
  CIC MUTATED CIC WILD-TYPE 
           23           466 
[1] "TXNDC6 MUTATION ANALYSIS"
[1] 3
  TXNDC6 MUTATED TXNDC6 WILD-TYPE 
               9              480 
  TXNDC6 MUTATED TXNDC6 WILD-TYPE 
               9              480 
[1] "HERC5 MUTATION ANALYSIS"
[1] 3
  HERC5 MUTATED HERC5 WILD-TYPE 
             21             468 
  HERC5 MUTATED HERC5 WILD-TYPE 
             21             468 
[1] "ENSA MUTATION ANALYSIS"
[1] 3
  ENSA MUTATED ENSA WILD-TYPE 
             6            483 
  ENSA MUTATED ENSA WILD-TYPE 
             6            483 
[1] "TMEM45A MUTATION ANALYSIS"
[1] 3
  TMEM45A MUTATED TMEM45A WILD-TYPE 
                4               485 
  TMEM45A MUTATED TMEM45A WILD-TYPE 
                4               485 
[1] "TNNI3K MUTATION ANALYSIS"
[1] 3
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              26              463 
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              26              463 
[1] "PFN4 MUTATION ANALYSIS"
[1] 3
  PFN4 MUTATED PFN4 WILD-TYPE 
             6            483 
  PFN4 MUTATED PFN4 WILD-TYPE 
             6            483 
[1] "GPR75 MUTATION ANALYSIS"
[1] 3
  GPR75 MUTATED GPR75 WILD-TYPE 
              9             480 
  GPR75 MUTATED GPR75 WILD-TYPE 
              9             480 
[1] "LAX1 MUTATION ANALYSIS"
[1] 3
  LAX1 MUTATED LAX1 WILD-TYPE 
             5            484 
  LAX1 MUTATED LAX1 WILD-TYPE 
             5            484 
[1] "DHX36 MUTATION ANALYSIS"
[1] 3
  DHX36 MUTATED DHX36 WILD-TYPE 
             17             472 
  DHX36 MUTATED DHX36 WILD-TYPE 
             17             472 
[1] "C13ORF23 MUTATION ANALYSIS"
[1] 3
  C13ORF23 MUTATED C13ORF23 WILD-TYPE 
                13                476 
  C13ORF23 MUTATED C13ORF23 WILD-TYPE 
                13                476 
[1] "BAG5 MUTATION ANALYSIS"
[1] 3
  BAG5 MUTATED BAG5 WILD-TYPE 
             3            486 
  BAG5 MUTATED BAG5 WILD-TYPE 
             3            486 
[1] "MIPOL1 MUTATION ANALYSIS"
[1] 3
  MIPOL1 MUTATED MIPOL1 WILD-TYPE 
               5              484 
  MIPOL1 MUTATED MIPOL1 WILD-TYPE 
               5              484 
[1] "CDH22 MUTATION ANALYSIS"
[1] 3
  CDH22 MUTATED CDH22 WILD-TYPE 
             20             469 
  CDH22 MUTATED CDH22 WILD-TYPE 
             20             469 
[1] "MAPK9 MUTATION ANALYSIS"
[1] 3
  MAPK9 MUTATED MAPK9 WILD-TYPE 
             12             477 
  MAPK9 MUTATED MAPK9 WILD-TYPE 
             12             477 
[1] "NRK MUTATION ANALYSIS"
[1] 3
  NRK MUTATED NRK WILD-TYPE 
           29           460 
  NRK MUTATED NRK WILD-TYPE 
           29           460 
[1] "TMEM131 MUTATION ANALYSIS"
[1] 3
  TMEM131 MUTATED TMEM131 WILD-TYPE 
               22               467 
  TMEM131 MUTATED TMEM131 WILD-TYPE 
               22               467 
[1] "DOCK8 MUTATION ANALYSIS"
[1] 3
  DOCK8 MUTATED DOCK8 WILD-TYPE 
             22             467 
  DOCK8 MUTATED DOCK8 WILD-TYPE 
             22             467 
[1] "FLNB MUTATION ANALYSIS"
[1] 3
  FLNB MUTATED FLNB WILD-TYPE 
            31            458 
  FLNB MUTATED FLNB WILD-TYPE 
            31            458 
[1] "PTTG1IP MUTATION ANALYSIS"
[1] 3
  PTTG1IP MUTATED PTTG1IP WILD-TYPE 
                7               482 
  PTTG1IP MUTATED PTTG1IP WILD-TYPE 
                7               482 
[1] "FUCA2 MUTATION ANALYSIS"
[1] 3
  FUCA2 MUTATED FUCA2 WILD-TYPE 
              5             484 
  FUCA2 MUTATED FUCA2 WILD-TYPE 
              5             484 
[1] "VN1R4 MUTATION ANALYSIS"
[1] 3
  VN1R4 MUTATED VN1R4 WILD-TYPE 
              8             481 
  VN1R4 MUTATED VN1R4 WILD-TYPE 
              8             481 
[1] "ARFIP1 MUTATION ANALYSIS"
[1] 3
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
              12              477 
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
              12              477 
[1] "UPF2 MUTATION ANALYSIS"
[1] 3
  UPF2 MUTATED UPF2 WILD-TYPE 
            19            470 
  UPF2 MUTATED UPF2 WILD-TYPE 
            19            470 
[1] "DCUN1D3 MUTATION ANALYSIS"
[1] 3
  DCUN1D3 MUTATED DCUN1D3 WILD-TYPE 
                7               482 
  DCUN1D3 MUTATED DCUN1D3 WILD-TYPE 
                7               482 
[1] "GPR115 MUTATION ANALYSIS"
[1] 3
  GPR115 MUTATED GPR115 WILD-TYPE 
              22              467 
  GPR115 MUTATED GPR115 WILD-TYPE 
              22              467 
[1] "NLK MUTATION ANALYSIS"
[1] 3
  NLK MUTATED NLK WILD-TYPE 
           11           478 
  NLK MUTATED NLK WILD-TYPE 
           11           478 
[1] "ARHGAP32 MUTATION ANALYSIS"
[1] 3
  ARHGAP32 MUTATED ARHGAP32 WILD-TYPE 
                26                463 
  ARHGAP32 MUTATED ARHGAP32 WILD-TYPE 
                26                463 
[1] "PIK3R4 MUTATION ANALYSIS"
[1] 3
  PIK3R4 MUTATED PIK3R4 WILD-TYPE 
              17              472 
  PIK3R4 MUTATED PIK3R4 WILD-TYPE 
              17              472 
[1] "GNAS MUTATION ANALYSIS"
[1] 3
  GNAS MUTATED GNAS WILD-TYPE 
            36            453 
  GNAS MUTATED GNAS WILD-TYPE 
            36            453 
[1] "TRIB1 MUTATION ANALYSIS"
[1] 3
  TRIB1 MUTATED TRIB1 WILD-TYPE 
              9             480 
  TRIB1 MUTATED TRIB1 WILD-TYPE 
              9             480 
[1] "VWCE MUTATION ANALYSIS"
[1] 3
  VWCE MUTATED VWCE WILD-TYPE 
            15            474 
  VWCE MUTATED VWCE WILD-TYPE 
            15            474 
[1] "JMJD6 MUTATION ANALYSIS"
[1] 3
  JMJD6 MUTATED JMJD6 WILD-TYPE 
              9             480 
  JMJD6 MUTATED JMJD6 WILD-TYPE 
              9             480 
[1] "AGFG2 MUTATION ANALYSIS"
[1] 3
  AGFG2 MUTATED AGFG2 WILD-TYPE 
             12             477 
  AGFG2 MUTATED AGFG2 WILD-TYPE 
             12             477 
[1] "VWA5A MUTATION ANALYSIS"
[1] 3
  VWA5A MUTATED VWA5A WILD-TYPE 
             15             474 
  VWA5A MUTATED VWA5A WILD-TYPE 
             15             474 
[1] "BAIAP2L1 MUTATION ANALYSIS"
[1] 3
  BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE 
                13                476 
  BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE 
                13                476 
[1] "BRD4 MUTATION ANALYSIS"
[1] 3
  BRD4 MUTATED BRD4 WILD-TYPE 
            21            468 
  BRD4 MUTATED BRD4 WILD-TYPE 
            21            468 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               26               463 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               26               463 
[1] "MCF2L2 MUTATION ANALYSIS"
[1] 3
  MCF2L2 MUTATED MCF2L2 WILD-TYPE 
              23              466 
  MCF2L2 MUTATED MCF2L2 WILD-TYPE 
              23              466 
[1] "DNAH17 MUTATION ANALYSIS"
[1] 3
  DNAH17 MUTATED DNAH17 WILD-TYPE 
              32              457 
  DNAH17 MUTATED DNAH17 WILD-TYPE 
              32              457 
[1] "ANKRD17 MUTATION ANALYSIS"
[1] 3
  ANKRD17 MUTATED ANKRD17 WILD-TYPE 
               30               459 
  ANKRD17 MUTATED ANKRD17 WILD-TYPE 
               30               459 
[1] "RAB42 MUTATION ANALYSIS"
[1] 3
  RAB42 MUTATED RAB42 WILD-TYPE 
              4             485 
  RAB42 MUTATED RAB42 WILD-TYPE 
              4             485 
[1] "PSMA2 MUTATION ANALYSIS"
[1] 3
  PSMA2 MUTATED PSMA2 WILD-TYPE 
              6             483 
  PSMA2 MUTATED PSMA2 WILD-TYPE 
              6             483 
[1] "ZKSCAN1 MUTATION ANALYSIS"
[1] 3
  ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE 
                8               481 
  ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE 
                8               481 
[1] "SLC27A2 MUTATION ANALYSIS"
[1] 3
  SLC27A2 MUTATED SLC27A2 WILD-TYPE 
                7               482 
  SLC27A2 MUTATED SLC27A2 WILD-TYPE 
                7               482 
[1] "OR6C75 MUTATION ANALYSIS"
[1] 3
  OR6C75 MUTATED OR6C75 WILD-TYPE 
               8              481 
  OR6C75 MUTATED OR6C75 WILD-TYPE 
               8              481 
[1] "TRIM54 MUTATION ANALYSIS"
[1] 3
  TRIM54 MUTATED TRIM54 WILD-TYPE 
               9              480 
  TRIM54 MUTATED TRIM54 WILD-TYPE 
               9              480 
[1] "ERCC6L MUTATION ANALYSIS"
[1] 3
  ERCC6L MUTATED ERCC6L WILD-TYPE 
              16              473 
  ERCC6L MUTATED ERCC6L WILD-TYPE 
              16              473 
[1] "CXORF38 MUTATION ANALYSIS"
[1] 3
  CXORF38 MUTATED CXORF38 WILD-TYPE 
                6               483 
  CXORF38 MUTATED CXORF38 WILD-TYPE 
                6               483 
[1] "C12ORF49 MUTATION ANALYSIS"
[1] 3
  C12ORF49 MUTATED C12ORF49 WILD-TYPE 
                 4                485 
  C12ORF49 MUTATED C12ORF49 WILD-TYPE 
                 4                485 
[1] "VEZF1 MUTATION ANALYSIS"
[1] 3
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              7             482 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              7             482 
[1] "DNAH6 MUTATION ANALYSIS"
[1] 3
  DNAH6 MUTATED DNAH6 WILD-TYPE 
             24             465 
  DNAH6 MUTATED DNAH6 WILD-TYPE 
             24             465 
[1] "ATP12A MUTATION ANALYSIS"
[1] 3
  ATP12A MUTATED ATP12A WILD-TYPE 
              30              459 
  ATP12A MUTATED ATP12A WILD-TYPE 
              30              459 
[1] "SGK3 MUTATION ANALYSIS"
[1] 3
  SGK3 MUTATED SGK3 WILD-TYPE 
            10            479 
  SGK3 MUTATED SGK3 WILD-TYPE 
            10            479 
[1] "ODAM MUTATION ANALYSIS"
[1] 3
  ODAM MUTATED ODAM WILD-TYPE 
             6            483 
  ODAM MUTATED ODAM WILD-TYPE 
             6            483 
[1] "CYSLTR2 MUTATION ANALYSIS"
[1] 3
  CYSLTR2 MUTATED CYSLTR2 WILD-TYPE 
               17               472 
  CYSLTR2 MUTATED CYSLTR2 WILD-TYPE 
               17               472 
[1] "RAB6C MUTATION ANALYSIS"
[1] 3
  RAB6C MUTATED RAB6C WILD-TYPE 
              5             484 
  RAB6C MUTATED RAB6C WILD-TYPE 
              5             484 
[1] "ZC3H6 MUTATION ANALYSIS"
[1] 3
  ZC3H6 MUTATED ZC3H6 WILD-TYPE 
             18             471 
  ZC3H6 MUTATED ZC3H6 WILD-TYPE 
             18             471 
[1] "TMEM48 MUTATION ANALYSIS"
[1] 3
  TMEM48 MUTATED TMEM48 WILD-TYPE 
              11              478 
  TMEM48 MUTATED TMEM48 WILD-TYPE 
              11              478 
[1] "C12ORF10 MUTATION ANALYSIS"
[1] 3
  C12ORF10 MUTATED C12ORF10 WILD-TYPE 
                 4                485 
  C12ORF10 MUTATED C12ORF10 WILD-TYPE 
                 4                485 
[1] "OSTM1 MUTATION ANALYSIS"
[1] 3
  OSTM1 MUTATED OSTM1 WILD-TYPE 
              5             484 
  OSTM1 MUTATED OSTM1 WILD-TYPE 
              5             484 
[1] "PLEKHB2 MUTATION ANALYSIS"
[1] 3
  PLEKHB2 MUTATED PLEKHB2 WILD-TYPE 
                6               483 
  PLEKHB2 MUTATED PLEKHB2 WILD-TYPE 
                6               483 
[1] "RALA MUTATION ANALYSIS"
[1] 3
  RALA MUTATED RALA WILD-TYPE 
             8            481 
  RALA MUTATED RALA WILD-TYPE 
             8            481 
[1] "BRD8 MUTATION ANALYSIS"
[1] 3
  BRD8 MUTATED BRD8 WILD-TYPE 
            18            471 
  BRD8 MUTATED BRD8 WILD-TYPE 
            18            471 
[1] "PER3 MUTATION ANALYSIS"
[1] 3
  PER3 MUTATED PER3 WILD-TYPE 
            18            471 
  PER3 MUTATED PER3 WILD-TYPE 
            18            471 
[1] "WT1 MUTATION ANALYSIS"
[1] 3
  WT1 MUTATED WT1 WILD-TYPE 
           30           459 
  WT1 MUTATED WT1 WILD-TYPE 
           30           459 
[1] "METTL9 MUTATION ANALYSIS"
[1] 3
  METTL9 MUTATED METTL9 WILD-TYPE 
               4              485 
  METTL9 MUTATED METTL9 WILD-TYPE 
               4              485 
[1] "FH MUTATION ANALYSIS"
[1] 3
  FH MUTATED FH WILD-TYPE 
          10          479 
  FH MUTATED FH WILD-TYPE 
          10          479 
[1] "H2AFJ MUTATION ANALYSIS"
[1] 3
  H2AFJ MUTATED H2AFJ WILD-TYPE 
              3             486 
  H2AFJ MUTATED H2AFJ WILD-TYPE 
              3             486 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             42             447 
  CDH10 MUTATED CDH10 WILD-TYPE 
             42             447 
[1] "HCRTR2 MUTATION ANALYSIS"
[1] 3
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               7              482 
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               7              482 
[1] "MTF1 MUTATION ANALYSIS"
[1] 3
  MTF1 MUTATED MTF1 WILD-TYPE 
            10            479 
  MTF1 MUTATED MTF1 WILD-TYPE 
            10            479 
[1] "ZNF518B MUTATION ANALYSIS"
[1] 3
  ZNF518B MUTATED ZNF518B WILD-TYPE 
               14               475 
  ZNF518B MUTATED ZNF518B WILD-TYPE 
               14               475 
[1] "KIAA0195 MUTATION ANALYSIS"
[1] 3
  KIAA0195 MUTATED KIAA0195 WILD-TYPE 
                18                471 
  KIAA0195 MUTATED KIAA0195 WILD-TYPE 
                18                471 
[1] "FAM20B MUTATION ANALYSIS"
[1] 3
  FAM20B MUTATED FAM20B WILD-TYPE 
              10              479 
  FAM20B MUTATED FAM20B WILD-TYPE 
              10              479 
[1] "EPHB1 MUTATION ANALYSIS"
[1] 3
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             43             446 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             43             446 
[1] "APBB1IP MUTATION ANALYSIS"
[1] 3
  APBB1IP MUTATED APBB1IP WILD-TYPE 
               19               470 
  APBB1IP MUTATED APBB1IP WILD-TYPE 
               19               470 
[1] "TXNDC17 MUTATION ANALYSIS"
[1] 3
  TXNDC17 MUTATED TXNDC17 WILD-TYPE 
                5               484 
  TXNDC17 MUTATED TXNDC17 WILD-TYPE 
                5               484 
[1] "HPSE MUTATION ANALYSIS"
[1] 3
  HPSE MUTATED HPSE WILD-TYPE 
            11            478 
  HPSE MUTATED HPSE WILD-TYPE 
            11            478 
[1] "SLC39A2 MUTATION ANALYSIS"
[1] 3
  SLC39A2 MUTATED SLC39A2 WILD-TYPE 
               10               479 
  SLC39A2 MUTATED SLC39A2 WILD-TYPE 
               10               479 
[1] "C9ORF71 MUTATION ANALYSIS"
[1] 3
  C9ORF71 MUTATED C9ORF71 WILD-TYPE 
                4               485 
  C9ORF71 MUTATED C9ORF71 WILD-TYPE 
                4               485 
[1] "STYK1 MUTATION ANALYSIS"
[1] 3
  STYK1 MUTATED STYK1 WILD-TYPE 
              7             482 
  STYK1 MUTATED STYK1 WILD-TYPE 
              7             482 
[1] "LGR4 MUTATION ANALYSIS"
[1] 3
  LGR4 MUTATED LGR4 WILD-TYPE 
            17            472 
  LGR4 MUTATED LGR4 WILD-TYPE 
            17            472 
[1] "C14ORF28 MUTATION ANALYSIS"
[1] 3
  C14ORF28 MUTATED C14ORF28 WILD-TYPE 
                 5                484 
  C14ORF28 MUTATED C14ORF28 WILD-TYPE 
                 5                484 
[1] "ACTL6A MUTATION ANALYSIS"
[1] 3
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               7              482 
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               7              482 
[1] "UPF3A MUTATION ANALYSIS"
[1] 3
  UPF3A MUTATED UPF3A WILD-TYPE 
              9             480 
  UPF3A MUTATED UPF3A WILD-TYPE 
              9             480 
[1] "MDH1 MUTATION ANALYSIS"
[1] 3
  MDH1 MUTATED MDH1 WILD-TYPE 
             8            481 
  MDH1 MUTATED MDH1 WILD-TYPE 
             8            481 
[1] "MYH11 MUTATION ANALYSIS"
[1] 3
  MYH11 MUTATED MYH11 WILD-TYPE 
             35             454 
  MYH11 MUTATED MYH11 WILD-TYPE 
             35             454 
[1] "KLF11 MUTATION ANALYSIS"
[1] 3
  KLF11 MUTATED KLF11 WILD-TYPE 
              8             481 
  KLF11 MUTATED KLF11 WILD-TYPE 
              8             481 
[1] "MED12L MUTATION ANALYSIS"
[1] 3
  MED12L MUTATED MED12L WILD-TYPE 
              31              458 
  MED12L MUTATED MED12L WILD-TYPE 
              31              458 
[1] "ZNF620 MUTATION ANALYSIS"
[1] 3
  ZNF620 MUTATED ZNF620 WILD-TYPE 
               9              480 
  ZNF620 MUTATED ZNF620 WILD-TYPE 
               9              480 
[1] "UGT1A7 MUTATION ANALYSIS"
[1] 3
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               8              481 
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               8              481 
[1] "UST MUTATION ANALYSIS"
[1] 3
  UST MUTATED UST WILD-TYPE 
           11           478 
  UST MUTATED UST WILD-TYPE 
           11           478 
[1] "NDUFAF1 MUTATION ANALYSIS"
[1] 3
  NDUFAF1 MUTATED NDUFAF1 WILD-TYPE 
                7               482 
  NDUFAF1 MUTATED NDUFAF1 WILD-TYPE 
                7               482 
[1] "ENPP1 MUTATION ANALYSIS"
[1] 3
  ENPP1 MUTATED ENPP1 WILD-TYPE 
             15             474 
  ENPP1 MUTATED ENPP1 WILD-TYPE 
             15             474 
[1] "CASP4 MUTATION ANALYSIS"
[1] 3
  CASP4 MUTATED CASP4 WILD-TYPE 
             10             479 
  CASP4 MUTATED CASP4 WILD-TYPE 
             10             479 
[1] "STK36 MUTATION ANALYSIS"
[1] 3
  STK36 MUTATED STK36 WILD-TYPE 
             18             471 
  STK36 MUTATED STK36 WILD-TYPE 
             18             471 
[1] "KRT19 MUTATION ANALYSIS"
[1] 3
  KRT19 MUTATED KRT19 WILD-TYPE 
              4             485 
  KRT19 MUTATED KRT19 WILD-TYPE 
              4             485 
[1] "KIF16B MUTATION ANALYSIS"
[1] 3
  KIF16B MUTATED KIF16B WILD-TYPE 
              31              458 
  KIF16B MUTATED KIF16B WILD-TYPE 
              31              458 
[1] "ZHX1 MUTATION ANALYSIS"
[1] 3
  ZHX1 MUTATED ZHX1 WILD-TYPE 
            11            478 
  ZHX1 MUTATED ZHX1 WILD-TYPE 
            11            478 
[1] "ZNF658 MUTATION ANALYSIS"
[1] 3
  ZNF658 MUTATED ZNF658 WILD-TYPE 
              14              475 
  ZNF658 MUTATED ZNF658 WILD-TYPE 
              14              475 
[1] "GPR141 MUTATION ANALYSIS"
[1] 3
  GPR141 MUTATED GPR141 WILD-TYPE 
              11              478 
  GPR141 MUTATED GPR141 WILD-TYPE 
              11              478 
[1] "ZNF585A MUTATION ANALYSIS"
[1] 3
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               19               470 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               19               470 
[1] "DIAPH2 MUTATION ANALYSIS"
[1] 3
  DIAPH2 MUTATED DIAPH2 WILD-TYPE 
              25              464 
  DIAPH2 MUTATED DIAPH2 WILD-TYPE 
              25              464 
[1] "ANKRD10 MUTATION ANALYSIS"
[1] 3
  ANKRD10 MUTATED ANKRD10 WILD-TYPE 
                9               480 
  ANKRD10 MUTATED ANKRD10 WILD-TYPE 
                9               480 
[1] "ASPG MUTATION ANALYSIS"
[1] 3
  ASPG MUTATED ASPG WILD-TYPE 
             7            482 
  ASPG MUTATED ASPG WILD-TYPE 
             7            482 
[1] "CDK14 MUTATION ANALYSIS"
[1] 3
  CDK14 MUTATED CDK14 WILD-TYPE 
             17             472 
  CDK14 MUTATED CDK14 WILD-TYPE 
             17             472 
[1] "OR8A1 MUTATION ANALYSIS"
[1] 3
  OR8A1 MUTATED OR8A1 WILD-TYPE 
              5             484 
  OR8A1 MUTATED OR8A1 WILD-TYPE 
              5             484 
[1] "SPINT4 MUTATION ANALYSIS"
[1] 3
  SPINT4 MUTATED SPINT4 WILD-TYPE 
               4              485 
  SPINT4 MUTATED SPINT4 WILD-TYPE 
               4              485 
[1] "E2F5 MUTATION ANALYSIS"
[1] 3
  E2F5 MUTATED E2F5 WILD-TYPE 
             7            482 
  E2F5 MUTATED E2F5 WILD-TYPE 
             7            482 
[1] "STRADB MUTATION ANALYSIS"
[1] 3
  STRADB MUTATED STRADB WILD-TYPE 
               7              482 
  STRADB MUTATED STRADB WILD-TYPE 
               7              482 
[1] "RANBP17 MUTATION ANALYSIS"
[1] 3
  RANBP17 MUTATED RANBP17 WILD-TYPE 
               12               477 
  RANBP17 MUTATED RANBP17 WILD-TYPE 
               12               477 
[1] "AHCTF1 MUTATION ANALYSIS"
[1] 3
  AHCTF1 MUTATED AHCTF1 WILD-TYPE 
              23              466 
  AHCTF1 MUTATED AHCTF1 WILD-TYPE 
              23              466 
[1] "OR10J1 MUTATION ANALYSIS"
[1] 3
  OR10J1 MUTATED OR10J1 WILD-TYPE 
              13              476 
  OR10J1 MUTATED OR10J1 WILD-TYPE 
              13              476 
[1] "MATN3 MUTATION ANALYSIS"
[1] 3
  MATN3 MUTATED MATN3 WILD-TYPE 
              6             483 
  MATN3 MUTATED MATN3 WILD-TYPE 
              6             483 
[1] "HNMT MUTATION ANALYSIS"
[1] 3
  HNMT MUTATED HNMT WILD-TYPE 
             8            481 
  HNMT MUTATED HNMT WILD-TYPE 
             8            481 
[1] "PAGE2 MUTATION ANALYSIS"
[1] 3
  PAGE2 MUTATED PAGE2 WILD-TYPE 
              9             480 
  PAGE2 MUTATED PAGE2 WILD-TYPE 
              9             480 
[1] "MYH3 MUTATION ANALYSIS"
[1] 3
  MYH3 MUTATED MYH3 WILD-TYPE 
            37            452 
  MYH3 MUTATED MYH3 WILD-TYPE 
            37            452 
[1] "OR6C1 MUTATION ANALYSIS"
[1] 3
  OR6C1 MUTATED OR6C1 WILD-TYPE 
              8             481 
  OR6C1 MUTATED OR6C1 WILD-TYPE 
              8             481 
[1] "GDE1 MUTATION ANALYSIS"
[1] 3
  GDE1 MUTATED GDE1 WILD-TYPE 
             6            483 
  GDE1 MUTATED GDE1 WILD-TYPE 
             6            483 
[1] "GRINA MUTATION ANALYSIS"
[1] 3
  GRINA MUTATED GRINA WILD-TYPE 
              4             485 
  GRINA MUTATED GRINA WILD-TYPE 
              4             485 
[1] "FRMD4B MUTATION ANALYSIS"
[1] 3
  FRMD4B MUTATED FRMD4B WILD-TYPE 
               8              481 
  FRMD4B MUTATED FRMD4B WILD-TYPE 
               8              481 
[1] "ARHGAP11A MUTATION ANALYSIS"
[1] 3
  ARHGAP11A MUTATED ARHGAP11A WILD-TYPE 
                 16                 473 
  ARHGAP11A MUTATED ARHGAP11A WILD-TYPE 
                 16                 473 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             26             463 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             26             463 
[1] "CEP290 MUTATION ANALYSIS"
[1] 3
  CEP290 MUTATED CEP290 WILD-TYPE 
              31              458 
  CEP290 MUTATED CEP290 WILD-TYPE 
              31              458 
[1] "MYBPH MUTATION ANALYSIS"
[1] 3
  MYBPH MUTATED MYBPH WILD-TYPE 
              7             482 
  MYBPH MUTATED MYBPH WILD-TYPE 
              7             482 
[1] "A2M MUTATION ANALYSIS"
[1] 3
  A2M MUTATED A2M WILD-TYPE 
           28           461 
  A2M MUTATED A2M WILD-TYPE 
           28           461 
[1] "ADM MUTATION ANALYSIS"
[1] 3
  ADM MUTATED ADM WILD-TYPE 
            6           483 
  ADM MUTATED ADM WILD-TYPE 
            6           483 
[1] "COL3A1 MUTATION ANALYSIS"
[1] 3
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              32              457 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              32              457 
[1] "CCAR1 MUTATION ANALYSIS"
[1] 3
  CCAR1 MUTATED CCAR1 WILD-TYPE 
             20             469 
  CCAR1 MUTATED CCAR1 WILD-TYPE 
             20             469 
[1] "ZNF182 MUTATION ANALYSIS"
[1] 3
  ZNF182 MUTATED ZNF182 WILD-TYPE 
              16              473 
  ZNF182 MUTATED ZNF182 WILD-TYPE 
              16              473 
[1] "CXXC5 MUTATION ANALYSIS"
[1] 3
  CXXC5 MUTATED CXXC5 WILD-TYPE 
              6             483 
  CXXC5 MUTATED CXXC5 WILD-TYPE 
              6             483 
[1] "SPAG1 MUTATION ANALYSIS"
[1] 3
  SPAG1 MUTATED SPAG1 WILD-TYPE 
             12             477 
  SPAG1 MUTATED SPAG1 WILD-TYPE 
             12             477 
[1] "KIAA0649 MUTATION ANALYSIS"
[1] 3
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                10                479 
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                10                479 
[1] "SPZ1 MUTATION ANALYSIS"
[1] 3
  SPZ1 MUTATED SPZ1 WILD-TYPE 
            11            478 
  SPZ1 MUTATED SPZ1 WILD-TYPE 
            11            478 
[1] "MLLT1 MUTATION ANALYSIS"
[1] 3
  MLLT1 MUTATED MLLT1 WILD-TYPE 
              6             483 
  MLLT1 MUTATED MLLT1 WILD-TYPE 
              6             483 
[1] "DLL3 MUTATION ANALYSIS"
[1] 3
  DLL3 MUTATED DLL3 WILD-TYPE 
             7            482 
  DLL3 MUTATED DLL3 WILD-TYPE 
             7            482 
[1] "PHF1 MUTATION ANALYSIS"
[1] 3
  PHF1 MUTATED PHF1 WILD-TYPE 
             7            482 
  PHF1 MUTATED PHF1 WILD-TYPE 
             7            482 
[1] "IFNAR1 MUTATION ANALYSIS"
[1] 3
  IFNAR1 MUTATED IFNAR1 WILD-TYPE 
               7              482 
  IFNAR1 MUTATED IFNAR1 WILD-TYPE 
               7              482 
[1] "MAP4K4 MUTATION ANALYSIS"
[1] 3
  MAP4K4 MUTATED MAP4K4 WILD-TYPE 
              21              468 
  MAP4K4 MUTATED MAP4K4 WILD-TYPE 
              21              468 
[1] "CSNK2A2 MUTATION ANALYSIS"
[1] 3
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                7               482 
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                7               482 
[1] "CBX3 MUTATION ANALYSIS"
[1] 3
  CBX3 MUTATED CBX3 WILD-TYPE 
             7            482 
  CBX3 MUTATED CBX3 WILD-TYPE 
             7            482 
[1] "MCART1 MUTATION ANALYSIS"
[1] 3
  MCART1 MUTATED MCART1 WILD-TYPE 
              13              476 
  MCART1 MUTATED MCART1 WILD-TYPE 
              13              476 
[1] "USP28 MUTATION ANALYSIS"
[1] 3
  USP28 MUTATED USP28 WILD-TYPE 
             28             461 
  USP28 MUTATED USP28 WILD-TYPE 
             28             461 
[1] "ZBP1 MUTATION ANALYSIS"
[1] 3
  ZBP1 MUTATED ZBP1 WILD-TYPE 
            13            476 
  ZBP1 MUTATED ZBP1 WILD-TYPE 
            13            476 
[1] "MYLK4 MUTATION ANALYSIS"
[1] 3
  MYLK4 MUTATED MYLK4 WILD-TYPE 
             14             475 
  MYLK4 MUTATED MYLK4 WILD-TYPE 
             14             475 
[1] "FER MUTATION ANALYSIS"
[1] 3
  FER MUTATED FER WILD-TYPE 
           17           472 
  FER MUTATED FER WILD-TYPE 
           17           472 
[1] "GNA11 MUTATION ANALYSIS"
[1] 3
  GNA11 MUTATED GNA11 WILD-TYPE 
              7             482 
  GNA11 MUTATED GNA11 WILD-TYPE 
              7             482 
[1] "CHRNA1 MUTATION ANALYSIS"
[1] 3
  CHRNA1 MUTATED CHRNA1 WILD-TYPE 
              12              477 
  CHRNA1 MUTATED CHRNA1 WILD-TYPE 
              12              477 
[1] "SLC16A1 MUTATION ANALYSIS"
[1] 3
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
               10               479 
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
               10               479 
[1] "TRAM1L1 MUTATION ANALYSIS"
[1] 3
  TRAM1L1 MUTATED TRAM1L1 WILD-TYPE 
               14               475 
  TRAM1L1 MUTATED TRAM1L1 WILD-TYPE 
               14               475 
[1] "MRPL13 MUTATION ANALYSIS"
[1] 3
  MRPL13 MUTATED MRPL13 WILD-TYPE 
               8              481 
  MRPL13 MUTATED MRPL13 WILD-TYPE 
               8              481 
[1] "MARVELD2 MUTATION ANALYSIS"
[1] 3
  MARVELD2 MUTATED MARVELD2 WILD-TYPE 
                11                478 
  MARVELD2 MUTATED MARVELD2 WILD-TYPE 
                11                478 
[1] "PAX6 MUTATION ANALYSIS"
[1] 3
  PAX6 MUTATED PAX6 WILD-TYPE 
            16            473 
  PAX6 MUTATED PAX6 WILD-TYPE 
            16            473 
[1] "ZNF547 MUTATION ANALYSIS"
[1] 3
  ZNF547 MUTATED ZNF547 WILD-TYPE 
              10              479 
  ZNF547 MUTATED ZNF547 WILD-TYPE 
              10              479 
[1] "ADCY9 MUTATION ANALYSIS"
[1] 3
  ADCY9 MUTATED ADCY9 WILD-TYPE 
             20             469 
  ADCY9 MUTATED ADCY9 WILD-TYPE 
             20             469 
[1] "AGAP4 MUTATION ANALYSIS"
[1] 3
  AGAP4 MUTATED AGAP4 WILD-TYPE 
              4             485 
  AGAP4 MUTATED AGAP4 WILD-TYPE 
              4             485 
[1] "OR11H12 MUTATION ANALYSIS"
[1] 3
  OR11H12 MUTATED OR11H12 WILD-TYPE 
                5               484 
  OR11H12 MUTATED OR11H12 WILD-TYPE 
                5               484 
[1] "SLC22A3 MUTATION ANALYSIS"
[1] 3
  SLC22A3 MUTATED SLC22A3 WILD-TYPE 
               13               476 
  SLC22A3 MUTATED SLC22A3 WILD-TYPE 
               13               476 
[1] "ATAD2B MUTATION ANALYSIS"
[1] 3
  ATAD2B MUTATED ATAD2B WILD-TYPE 
              18              471 
  ATAD2B MUTATED ATAD2B WILD-TYPE 
              18              471 
[1] "GPR126 MUTATION ANALYSIS"
[1] 3
  GPR126 MUTATED GPR126 WILD-TYPE 
              19              470 
  GPR126 MUTATED GPR126 WILD-TYPE 
              19              470 
[1] "CHMP4C MUTATION ANALYSIS"
[1] 3
  CHMP4C MUTATED CHMP4C WILD-TYPE 
               4              485 
  CHMP4C MUTATED CHMP4C WILD-TYPE 
               4              485 
[1] "POLQ MUTATION ANALYSIS"
[1] 3
  POLQ MUTATED POLQ WILD-TYPE 
            33            456 
  POLQ MUTATED POLQ WILD-TYPE 
            33            456 
[1] "CLGN MUTATION ANALYSIS"
[1] 3
  CLGN MUTATED CLGN WILD-TYPE 
            13            476 
  CLGN MUTATED CLGN WILD-TYPE 
            13            476 
[1] "EML4 MUTATION ANALYSIS"
[1] 3
  EML4 MUTATED EML4 WILD-TYPE 
            10            479 
  EML4 MUTATED EML4 WILD-TYPE 
            10            479 
[1] "AP1G2 MUTATION ANALYSIS"
[1] 3
  AP1G2 MUTATED AP1G2 WILD-TYPE 
             15             474 
  AP1G2 MUTATED AP1G2 WILD-TYPE 
             15             474 
[1] "CD3D MUTATION ANALYSIS"
[1] 3
  CD3D MUTATED CD3D WILD-TYPE 
             5            484 
  CD3D MUTATED CD3D WILD-TYPE 
             5            484 
[1] "CCDC69 MUTATION ANALYSIS"
[1] 3
  CCDC69 MUTATED CCDC69 WILD-TYPE 
               5              484 
  CCDC69 MUTATED CCDC69 WILD-TYPE 
               5              484 
[1] "NOL9 MUTATION ANALYSIS"
[1] 3
  NOL9 MUTATED NOL9 WILD-TYPE 
             7            482 
  NOL9 MUTATED NOL9 WILD-TYPE 
             7            482 
[1] "DSC2 MUTATION ANALYSIS"
[1] 3
  DSC2 MUTATED DSC2 WILD-TYPE 
            15            474 
  DSC2 MUTATED DSC2 WILD-TYPE 
            15            474 
[1] "AGTPBP1 MUTATION ANALYSIS"
[1] 3
  AGTPBP1 MUTATED AGTPBP1 WILD-TYPE 
               21               468 
  AGTPBP1 MUTATED AGTPBP1 WILD-TYPE 
               21               468 
[1] "C18ORF19 MUTATION ANALYSIS"
[1] 3
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 9                480 
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 9                480 
[1] "AWAT1 MUTATION ANALYSIS"
[1] 3
  AWAT1 MUTATED AWAT1 WILD-TYPE 
              9             480 
  AWAT1 MUTATED AWAT1 WILD-TYPE 
              9             480 
[1] "YSK4 MUTATION ANALYSIS"
[1] 3
  YSK4 MUTATED YSK4 WILD-TYPE 
            30            459 
  YSK4 MUTATED YSK4 WILD-TYPE 
            30            459 
[1] "GSTA5 MUTATION ANALYSIS"
[1] 3
  GSTA5 MUTATED GSTA5 WILD-TYPE 
              8             481 
  GSTA5 MUTATED GSTA5 WILD-TYPE 
              8             481 
[1] "PCOLCE2 MUTATION ANALYSIS"
[1] 3
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
               15               474 
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
               15               474 
[1] "BUB1B MUTATION ANALYSIS"
[1] 3
  BUB1B MUTATED BUB1B WILD-TYPE 
             11             478 
  BUB1B MUTATED BUB1B WILD-TYPE 
             11             478 
[1] "MC3R MUTATION ANALYSIS"
[1] 3
  MC3R MUTATED MC3R WILD-TYPE 
            14            475 
  MC3R MUTATED MC3R WILD-TYPE 
            14            475 
[1] "DNASE1L3 MUTATION ANALYSIS"
[1] 3
  DNASE1L3 MUTATED DNASE1L3 WILD-TYPE 
                 8                481 
  DNASE1L3 MUTATED DNASE1L3 WILD-TYPE 
                 8                481 
[1] "FAM98B MUTATION ANALYSIS"
[1] 3
  FAM98B MUTATED FAM98B WILD-TYPE 
               5              484 
  FAM98B MUTATED FAM98B WILD-TYPE 
               5              484 
[1] "DCTN5 MUTATION ANALYSIS"
[1] 3
  DCTN5 MUTATED DCTN5 WILD-TYPE 
              6             483 
  DCTN5 MUTATED DCTN5 WILD-TYPE 
              6             483 
[1] "SLC11A2 MUTATION ANALYSIS"
[1] 3
  SLC11A2 MUTATED SLC11A2 WILD-TYPE 
                9               480 
  SLC11A2 MUTATED SLC11A2 WILD-TYPE 
                9               480 
[1] "SERPINB7 MUTATION ANALYSIS"
[1] 3
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 8                481 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 8                481 
[1] "PTPRJ MUTATION ANALYSIS"
[1] 3
  PTPRJ MUTATED PTPRJ WILD-TYPE 
             18             471 
  PTPRJ MUTATED PTPRJ WILD-TYPE 
             18             471 
[1] "WDR5 MUTATION ANALYSIS"
[1] 3
  WDR5 MUTATED WDR5 WILD-TYPE 
             6            483 
  WDR5 MUTATED WDR5 WILD-TYPE 
             6            483 
[1] "MAP3K4 MUTATION ANALYSIS"
[1] 3
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              39              450 
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              39              450 
[1] "KRTAP5-3 MUTATION ANALYSIS"
[1] 3
  KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE 
                 4                485 
  KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE 
                 4                485 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            34            455 
  CPS1 MUTATED CPS1 WILD-TYPE 
            34            455 
[1] "MDN1 MUTATION ANALYSIS"
[1] 3
  MDN1 MUTATED MDN1 WILD-TYPE 
            57            432 
  MDN1 MUTATED MDN1 WILD-TYPE 
            57            432 
[1] "COCH MUTATION ANALYSIS"
[1] 3
  COCH MUTATED COCH WILD-TYPE 
             7            482 
  COCH MUTATED COCH WILD-TYPE 
             7            482 
[1] "MFSD9 MUTATION ANALYSIS"
[1] 3
  MFSD9 MUTATED MFSD9 WILD-TYPE 
             12             477 
  MFSD9 MUTATED MFSD9 WILD-TYPE 
             12             477 
[1] "HSPA4L MUTATION ANALYSIS"
[1] 3
  HSPA4L MUTATED HSPA4L WILD-TYPE 
              12              477 
  HSPA4L MUTATED HSPA4L WILD-TYPE 
              12              477 
[1] "TMTC4 MUTATION ANALYSIS"
[1] 3
  TMTC4 MUTATED TMTC4 WILD-TYPE 
             15             474 
  TMTC4 MUTATED TMTC4 WILD-TYPE 
             15             474 
[1] "TGIF1 MUTATION ANALYSIS"
[1] 3
  TGIF1 MUTATED TGIF1 WILD-TYPE 
             11             478 
  TGIF1 MUTATED TGIF1 WILD-TYPE 
             11             478 
[1] "TBL1XR1 MUTATION ANALYSIS"
[1] 3
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
               13               476 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
               13               476 
[1] "NXF3 MUTATION ANALYSIS"
[1] 3
  NXF3 MUTATED NXF3 WILD-TYPE 
            12            477 
  NXF3 MUTATED NXF3 WILD-TYPE 
            12            477 
[1] "SBNO1 MUTATION ANALYSIS"
[1] 3
  SBNO1 MUTATED SBNO1 WILD-TYPE 
             18             471 
  SBNO1 MUTATED SBNO1 WILD-TYPE 
             18             471 
[1] "FLT1 MUTATION ANALYSIS"
[1] 3
  FLT1 MUTATED FLT1 WILD-TYPE 
            35            454 
  FLT1 MUTATED FLT1 WILD-TYPE 
            35            454 
[1] "NCL MUTATION ANALYSIS"
[1] 3
  NCL MUTATED NCL WILD-TYPE 
           12           477 
  NCL MUTATED NCL WILD-TYPE 
           12           477 
[1] "SMC1B MUTATION ANALYSIS"
[1] 3
  SMC1B MUTATED SMC1B WILD-TYPE 
             22             467 
  SMC1B MUTATED SMC1B WILD-TYPE 
             22             467 
[1] "HRSP12 MUTATION ANALYSIS"
[1] 3
  HRSP12 MUTATED HRSP12 WILD-TYPE 
               7              482 
  HRSP12 MUTATED HRSP12 WILD-TYPE 
               7              482 
[1] "RRS1 MUTATION ANALYSIS"
[1] 3
  RRS1 MUTATED RRS1 WILD-TYPE 
             4            485 
  RRS1 MUTATED RRS1 WILD-TYPE 
             4            485 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            19            470 
  CTCF MUTATED CTCF WILD-TYPE 
            19            470 
[1] "RNF38 MUTATION ANALYSIS"
[1] 3
  RNF38 MUTATED RNF38 WILD-TYPE 
              6             483 
  RNF38 MUTATED RNF38 WILD-TYPE 
              6             483 
[1] "ANKRD50 MUTATION ANALYSIS"
[1] 3
  ANKRD50 MUTATED ANKRD50 WILD-TYPE 
               21               468 
  ANKRD50 MUTATED ANKRD50 WILD-TYPE 
               21               468 
[1] "DNAJC16 MUTATION ANALYSIS"
[1] 3
  DNAJC16 MUTATED DNAJC16 WILD-TYPE 
               11               478 
  DNAJC16 MUTATED DNAJC16 WILD-TYPE 
               11               478 
[1] "PIGK MUTATION ANALYSIS"
[1] 3
  PIGK MUTATED PIGK WILD-TYPE 
            12            477 
  PIGK MUTATED PIGK WILD-TYPE 
            12            477 
[1] "COPB2 MUTATION ANALYSIS"
[1] 3
  COPB2 MUTATED COPB2 WILD-TYPE 
             16             473 
  COPB2 MUTATED COPB2 WILD-TYPE 
             16             473 
[1] "CIZ1 MUTATION ANALYSIS"
[1] 3
  CIZ1 MUTATED CIZ1 WILD-TYPE 
            16            473 
  CIZ1 MUTATED CIZ1 WILD-TYPE 
            16            473 
[1] "TMEM92 MUTATION ANALYSIS"
[1] 3
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               3              486 
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               3              486 
[1] "TAS2R1 MUTATION ANALYSIS"
[1] 3
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               5              484 
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               5              484 
[1] "EHHADH MUTATION ANALYSIS"
[1] 3
  EHHADH MUTATED EHHADH WILD-TYPE 
              15              474 
  EHHADH MUTATED EHHADH WILD-TYPE 
              15              474 
[1] "KDM2B MUTATION ANALYSIS"
[1] 3
  KDM2B MUTATED KDM2B WILD-TYPE 
             22             467 
  KDM2B MUTATED KDM2B WILD-TYPE 
             22             467 
[1] "ITGB6 MUTATION ANALYSIS"
[1] 3
  ITGB6 MUTATED ITGB6 WILD-TYPE 
             18             471 
  ITGB6 MUTATED ITGB6 WILD-TYPE 
             18             471 
[1] "ESCO1 MUTATION ANALYSIS"
[1] 3
  ESCO1 MUTATED ESCO1 WILD-TYPE 
             17             472 
  ESCO1 MUTATED ESCO1 WILD-TYPE 
             17             472 
[1] "SERPINB10 MUTATION ANALYSIS"
[1] 3
  SERPINB10 MUTATED SERPINB10 WILD-TYPE 
                 12                 477 
  SERPINB10 MUTATED SERPINB10 WILD-TYPE 
                 12                 477 
[1] "GRB14 MUTATION ANALYSIS"
[1] 3
  GRB14 MUTATED GRB14 WILD-TYPE 
             11             478 
  GRB14 MUTATED GRB14 WILD-TYPE 
             11             478 
[1] "OR6K2 MUTATION ANALYSIS"
[1] 3
  OR6K2 MUTATED OR6K2 WILD-TYPE 
             16             473 
  OR6K2 MUTATED OR6K2 WILD-TYPE 
             16             473 
[1] "ARAP3 MUTATION ANALYSIS"
[1] 3
  ARAP3 MUTATED ARAP3 WILD-TYPE 
             24             465 
  ARAP3 MUTATED ARAP3 WILD-TYPE 
             24             465 
[1] "ZNF334 MUTATION ANALYSIS"
[1] 3
  ZNF334 MUTATED ZNF334 WILD-TYPE 
              21              468 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
              21              468 
[1] "SIRT4 MUTATION ANALYSIS"
[1] 3
  SIRT4 MUTATED SIRT4 WILD-TYPE 
              7             482 
  SIRT4 MUTATED SIRT4 WILD-TYPE 
              7             482 
[1] "C1ORF35 MUTATION ANALYSIS"
[1] 3
  C1ORF35 MUTATED C1ORF35 WILD-TYPE 
                5               484 
  C1ORF35 MUTATED C1ORF35 WILD-TYPE 
                5               484 
[1] "PLK2 MUTATION ANALYSIS"
[1] 3
  PLK2 MUTATED PLK2 WILD-TYPE 
             7            482 
  PLK2 MUTATED PLK2 WILD-TYPE 
             7            482 
[1] "CCT4 MUTATION ANALYSIS"
[1] 3
  CCT4 MUTATED CCT4 WILD-TYPE 
            14            475 
  CCT4 MUTATED CCT4 WILD-TYPE 
            14            475 
[1] "MAP3K12 MUTATION ANALYSIS"
[1] 3
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
               14               475 
  MAP3K12 MUTATED MAP3K12 WILD-TYPE 
               14               475 
[1] "FGD3 MUTATION ANALYSIS"
[1] 3
  FGD3 MUTATED FGD3 WILD-TYPE 
            14            475 
  FGD3 MUTATED FGD3 WILD-TYPE 
            14            475 
[1] "ACAT2 MUTATION ANALYSIS"
[1] 3
  ACAT2 MUTATED ACAT2 WILD-TYPE 
              9             480 
  ACAT2 MUTATED ACAT2 WILD-TYPE 
              9             480 
[1] "PRRT2 MUTATION ANALYSIS"
[1] 3
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              6             483 
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              6             483 
[1] "C14ORF50 MUTATION ANALYSIS"
[1] 3
  C14ORF50 MUTATED C14ORF50 WILD-TYPE 
                 8                481 
  C14ORF50 MUTATED C14ORF50 WILD-TYPE 
                 8                481 
[1] "KCNG4 MUTATION ANALYSIS"
[1] 3
  KCNG4 MUTATED KCNG4 WILD-TYPE 
             10             479 
  KCNG4 MUTATED KCNG4 WILD-TYPE 
             10             479 
[1] "ANKRD23 MUTATION ANALYSIS"
[1] 3
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                5               484 
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                5               484 
[1] "KIAA0556 MUTATION ANALYSIS"
[1] 3
  KIAA0556 MUTATED KIAA0556 WILD-TYPE 
                24                465 
  KIAA0556 MUTATED KIAA0556 WILD-TYPE 
                24                465 
[1] "SLC25A44 MUTATION ANALYSIS"
[1] 3
  SLC25A44 MUTATED SLC25A44 WILD-TYPE 
                 5                484 
  SLC25A44 MUTATED SLC25A44 WILD-TYPE 
                 5                484 
[1] "VPS13C MUTATION ANALYSIS"
[1] 3
  VPS13C MUTATED VPS13C WILD-TYPE 
              28              461 
  VPS13C MUTATED VPS13C WILD-TYPE 
              28              461 
[1] "PGAP3 MUTATION ANALYSIS"
[1] 3
  PGAP3 MUTATED PGAP3 WILD-TYPE 
              8             481 
  PGAP3 MUTATED PGAP3 WILD-TYPE 
              8             481 
[1] "PARP1 MUTATION ANALYSIS"
[1] 3
  PARP1 MUTATED PARP1 WILD-TYPE 
             15             474 
  PARP1 MUTATED PARP1 WILD-TYPE 
             15             474 
[1] "EPC1 MUTATION ANALYSIS"
[1] 3
  EPC1 MUTATED EPC1 WILD-TYPE 
            13            476 
  EPC1 MUTATED EPC1 WILD-TYPE 
            13            476 
[1] "ST6GALNAC3 MUTATION ANALYSIS"
[1] 3
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                  13                  476 
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                  13                  476 
[1] "BRSK1 MUTATION ANALYSIS"
[1] 3
  BRSK1 MUTATED BRSK1 WILD-TYPE 
             18             471 
  BRSK1 MUTATED BRSK1 WILD-TYPE 
             18             471 
[1] "FAM91A1 MUTATION ANALYSIS"
[1] 3
  FAM91A1 MUTATED FAM91A1 WILD-TYPE 
               12               477 
  FAM91A1 MUTATED FAM91A1 WILD-TYPE 
               12               477 
[1] "FAM119A MUTATION ANALYSIS"
[1] 3
  FAM119A MUTATED FAM119A WILD-TYPE 
                6               483 
  FAM119A MUTATED FAM119A WILD-TYPE 
                6               483 
[1] "ZKSCAN2 MUTATION ANALYSIS"
[1] 3
  ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE 
               17               472 
  ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE 
               17               472 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             12             477 
  HLA-B MUTATED HLA-B WILD-TYPE 
             12             477 
[1] "NHLRC2 MUTATION ANALYSIS"
[1] 3
  NHLRC2 MUTATED NHLRC2 WILD-TYPE 
               9              480 
  NHLRC2 MUTATED NHLRC2 WILD-TYPE 
               9              480 
[1] "BST2 MUTATION ANALYSIS"
[1] 3
  BST2 MUTATED BST2 WILD-TYPE 
             6            483 
  BST2 MUTATED BST2 WILD-TYPE 
             6            483 
[1] "VASH1 MUTATION ANALYSIS"
[1] 3
  VASH1 MUTATED VASH1 WILD-TYPE 
              5             484 
  VASH1 MUTATED VASH1 WILD-TYPE 
              5             484 
[1] "CT47B1 MUTATION ANALYSIS"
[1] 3
  CT47B1 MUTATED CT47B1 WILD-TYPE 
               8              481 
  CT47B1 MUTATED CT47B1 WILD-TYPE 
               8              481 
[1] "ZNF619 MUTATION ANALYSIS"
[1] 3
  ZNF619 MUTATED ZNF619 WILD-TYPE 
              11              478 
  ZNF619 MUTATED ZNF619 WILD-TYPE 
              11              478 
[1] "LIX1 MUTATION ANALYSIS"
[1] 3
  LIX1 MUTATED LIX1 WILD-TYPE 
            11            478 
  LIX1 MUTATED LIX1 WILD-TYPE 
            11            478 
[1] "BCLAF1 MUTATION ANALYSIS"
[1] 3
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              22              467 
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              22              467 
[1] "OR2Y1 MUTATION ANALYSIS"
[1] 3
  OR2Y1 MUTATED OR2Y1 WILD-TYPE 
              8             481 
  OR2Y1 MUTATED OR2Y1 WILD-TYPE 
              8             481 
[1] "KTN1 MUTATION ANALYSIS"
[1] 3
  KTN1 MUTATED KTN1 WILD-TYPE 
            20            469 
  KTN1 MUTATED KTN1 WILD-TYPE 
            20            469 
[1] "CBLL1 MUTATION ANALYSIS"
[1] 3
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              6             483 
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              6             483 
[1] "CTSZ MUTATION ANALYSIS"
[1] 3
  CTSZ MUTATED CTSZ WILD-TYPE 
             6            483 
  CTSZ MUTATED CTSZ WILD-TYPE 
             6            483 
[1] "GLDN MUTATION ANALYSIS"
[1] 3
  GLDN MUTATED GLDN WILD-TYPE 
             9            480 
  GLDN MUTATED GLDN WILD-TYPE 
             9            480 
[1] "RARRES3 MUTATION ANALYSIS"
[1] 3
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                5               484 
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                5               484 
[1] "CBLN3 MUTATION ANALYSIS"
[1] 3
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              6             483 
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              6             483 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             23             466 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             23             466 
[1] "WDR5B MUTATION ANALYSIS"
[1] 3
  WDR5B MUTATED WDR5B WILD-TYPE 
             13             476 
  WDR5B MUTATED WDR5B WILD-TYPE 
             13             476 
[1] "CLDND1 MUTATION ANALYSIS"
[1] 3
  CLDND1 MUTATED CLDND1 WILD-TYPE 
              10              479 
  CLDND1 MUTATED CLDND1 WILD-TYPE 
              10              479 
[1] "MERTK MUTATION ANALYSIS"
[1] 3
  MERTK MUTATED MERTK WILD-TYPE 
             20             469 
  MERTK MUTATED MERTK WILD-TYPE 
             20             469 
[1] "PRMT8 MUTATION ANALYSIS"
[1] 3
  PRMT8 MUTATED PRMT8 WILD-TYPE 
             14             475 
  PRMT8 MUTATED PRMT8 WILD-TYPE 
             14             475 
[1] "TCEAL5 MUTATION ANALYSIS"
[1] 3
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               5              484 
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               5              484 
[1] "OR9Q2 MUTATION ANALYSIS"
[1] 3
  OR9Q2 MUTATED OR9Q2 WILD-TYPE 
             14             475 
  OR9Q2 MUTATED OR9Q2 WILD-TYPE 
             14             475 
[1] "CTNNA3 MUTATION ANALYSIS"
[1] 3
  CTNNA3 MUTATED CTNNA3 WILD-TYPE 
              26              463 
  CTNNA3 MUTATED CTNNA3 WILD-TYPE 
              26              463 
[1] "C14ORF39 MUTATION ANALYSIS"
[1] 3
  C14ORF39 MUTATED C14ORF39 WILD-TYPE 
                17                472 
  C14ORF39 MUTATED C14ORF39 WILD-TYPE 
                17                472 
[1] "SAPS3 MUTATION ANALYSIS"
[1] 3
  SAPS3 MUTATED SAPS3 WILD-TYPE 
             15             474 
  SAPS3 MUTATED SAPS3 WILD-TYPE 
             15             474 
[1] "TRIM31 MUTATION ANALYSIS"
[1] 3
  TRIM31 MUTATED TRIM31 WILD-TYPE 
               5              484 
  TRIM31 MUTATED TRIM31 WILD-TYPE 
               5              484 
[1] "PHF14 MUTATION ANALYSIS"
[1] 3
  PHF14 MUTATED PHF14 WILD-TYPE 
             16             473 
  PHF14 MUTATED PHF14 WILD-TYPE 
             16             473 
[1] "MOV10 MUTATION ANALYSIS"
[1] 3
  MOV10 MUTATED MOV10 WILD-TYPE 
             14             475 
  MOV10 MUTATED MOV10 WILD-TYPE 
             14             475 
[1] "PTCH2 MUTATION ANALYSIS"
[1] 3
  PTCH2 MUTATED PTCH2 WILD-TYPE 
             19             470 
  PTCH2 MUTATED PTCH2 WILD-TYPE 
             19             470 
[1] "POMGNT1 MUTATION ANALYSIS"
[1] 3
  POMGNT1 MUTATED POMGNT1 WILD-TYPE 
                8               481 
  POMGNT1 MUTATED POMGNT1 WILD-TYPE 
                8               481 
[1] "NAA10 MUTATION ANALYSIS"
[1] 3
  NAA10 MUTATED NAA10 WILD-TYPE 
              3             486 
  NAA10 MUTATED NAA10 WILD-TYPE 
              3             486 
[1] "OR2A5 MUTATION ANALYSIS"
[1] 3
  OR2A5 MUTATED OR2A5 WILD-TYPE 
             13             476 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
             13             476 
[1] "HAUS3 MUTATION ANALYSIS"
[1] 3
  HAUS3 MUTATED HAUS3 WILD-TYPE 
             10             479 
  HAUS3 MUTATED HAUS3 WILD-TYPE 
             10             479 
[1] "IFIH1 MUTATION ANALYSIS"
[1] 3
  IFIH1 MUTATED IFIH1 WILD-TYPE 
             16             473 
  IFIH1 MUTATED IFIH1 WILD-TYPE 
             16             473 
[1] "AKAP11 MUTATION ANALYSIS"
[1] 3
  AKAP11 MUTATED AKAP11 WILD-TYPE 
              25              464 
  AKAP11 MUTATED AKAP11 WILD-TYPE 
              25              464 
[1] "CRTC1 MUTATION ANALYSIS"
[1] 3
  CRTC1 MUTATED CRTC1 WILD-TYPE 
             13             476 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
             13             476 
[1] "PKHD1L1 MUTATION ANALYSIS"
[1] 3
  PKHD1L1 MUTATED PKHD1L1 WILD-TYPE 
               46               443 
  PKHD1L1 MUTATED PKHD1L1 WILD-TYPE 
               46               443 
[1] "UFSP2 MUTATION ANALYSIS"
[1] 3
  UFSP2 MUTATED UFSP2 WILD-TYPE 
              5             484 
  UFSP2 MUTATED UFSP2 WILD-TYPE 
              5             484 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            478 
  MUC7 MUTATED MUC7 WILD-TYPE 
            11            478 
[1] "RIMBP3 MUTATION ANALYSIS"
[1] 3
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               6              483 
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               6              483 
[1] "S100A2 MUTATION ANALYSIS"
[1] 3
  S100A2 MUTATED S100A2 WILD-TYPE 
               8              481 
  S100A2 MUTATED S100A2 WILD-TYPE 
               8              481 
[1] "PCSK1 MUTATION ANALYSIS"
[1] 3
  PCSK1 MUTATED PCSK1 WILD-TYPE 
             19             470 
  PCSK1 MUTATED PCSK1 WILD-TYPE 
             19             470 
[1] "RTN4 MUTATION ANALYSIS"
[1] 3
  RTN4 MUTATED RTN4 WILD-TYPE 
            21            468 
  RTN4 MUTATED RTN4 WILD-TYPE 
            21            468 
[1] "C14ORF104 MUTATION ANALYSIS"
[1] 3
  C14ORF104 MUTATED C14ORF104 WILD-TYPE 
                  5                 484 
  C14ORF104 MUTATED C14ORF104 WILD-TYPE 
                  5                 484 
[1] "USF1 MUTATION ANALYSIS"
[1] 3
  USF1 MUTATED USF1 WILD-TYPE 
             5            484 
  USF1 MUTATED USF1 WILD-TYPE 
             5            484 
[1] "KLF12 MUTATION ANALYSIS"
[1] 3
  KLF12 MUTATED KLF12 WILD-TYPE 
              5             484 
  KLF12 MUTATED KLF12 WILD-TYPE 
              5             484 
[1] "VIM MUTATION ANALYSIS"
[1] 3
  VIM MUTATED VIM WILD-TYPE 
            9           480 
  VIM MUTATED VIM WILD-TYPE 
            9           480 
[1] "GLG1 MUTATION ANALYSIS"
[1] 3
  GLG1 MUTATED GLG1 WILD-TYPE 
            14            475 
  GLG1 MUTATED GLG1 WILD-TYPE 
            14            475 
[1] "CETN3 MUTATION ANALYSIS"
[1] 3
  CETN3 MUTATED CETN3 WILD-TYPE 
              6             483 
  CETN3 MUTATED CETN3 WILD-TYPE 
              6             483 
[1] "SFRS15 MUTATION ANALYSIS"
[1] 3
  SFRS15 MUTATED SFRS15 WILD-TYPE 
              20              469 
  SFRS15 MUTATED SFRS15 WILD-TYPE 
              20              469 
[1] "ADAMTSL3 MUTATION ANALYSIS"
[1] 3
  ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE 
                46                443 
  ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE 
                46                443 
[1] "CASP1 MUTATION ANALYSIS"
[1] 3
  CASP1 MUTATED CASP1 WILD-TYPE 
              6             483 
  CASP1 MUTATED CASP1 WILD-TYPE 
              6             483 
[1] "B4GALT6 MUTATION ANALYSIS"
[1] 3
  B4GALT6 MUTATED B4GALT6 WILD-TYPE 
               10               479 
  B4GALT6 MUTATED B4GALT6 WILD-TYPE 
               10               479 
[1] "RAD21 MUTATION ANALYSIS"
[1] 3
  RAD21 MUTATED RAD21 WILD-TYPE 
             17             472 
  RAD21 MUTATED RAD21 WILD-TYPE 
             17             472 
[1] "HUS1 MUTATION ANALYSIS"
[1] 3
  HUS1 MUTATED HUS1 WILD-TYPE 
             8            481 
  HUS1 MUTATED HUS1 WILD-TYPE 
             8            481 
[1] "PTPN14 MUTATION ANALYSIS"
[1] 3
  PTPN14 MUTATED PTPN14 WILD-TYPE 
              21              468 
  PTPN14 MUTATED PTPN14 WILD-TYPE 
              21              468 
[1] "FZD6 MUTATION ANALYSIS"
[1] 3
  FZD6 MUTATED FZD6 WILD-TYPE 
            15            474 
  FZD6 MUTATED FZD6 WILD-TYPE 
            15            474 
[1] "C6ORF222 MUTATION ANALYSIS"
[1] 3
  C6ORF222 MUTATED C6ORF222 WILD-TYPE 
                 6                483 
  C6ORF222 MUTATED C6ORF222 WILD-TYPE 
                 6                483 
[1] "ANKRD26 MUTATION ANALYSIS"
[1] 3
  ANKRD26 MUTATED ANKRD26 WILD-TYPE 
               23               466 
  ANKRD26 MUTATED ANKRD26 WILD-TYPE 
               23               466 
[1] "TDRD7 MUTATION ANALYSIS"
[1] 3
  TDRD7 MUTATED TDRD7 WILD-TYPE 
             16             473 
  TDRD7 MUTATED TDRD7 WILD-TYPE 
             16             473 
[1] "MFSD6 MUTATION ANALYSIS"
[1] 3
  MFSD6 MUTATED MFSD6 WILD-TYPE 
              8             481 
  MFSD6 MUTATED MFSD6 WILD-TYPE 
              8             481 
[1] "KIAA1632 MUTATION ANALYSIS"
[1] 3
  KIAA1632 MUTATED KIAA1632 WILD-TYPE 
                31                458 
  KIAA1632 MUTATED KIAA1632 WILD-TYPE 
                31                458 
[1] "ADK MUTATION ANALYSIS"
[1] 3
  ADK MUTATED ADK WILD-TYPE 
            7           482 
  ADK MUTATED ADK WILD-TYPE 
            7           482 
[1] "PTPRB MUTATION ANALYSIS"
[1] 3
  PTPRB MUTATED PTPRB WILD-TYPE 
             18             471 
  PTPRB MUTATED PTPRB WILD-TYPE 
             18             471 
[1] "ZNF280C MUTATION ANALYSIS"
[1] 3
  ZNF280C MUTATED ZNF280C WILD-TYPE 
               14               475 
  ZNF280C MUTATED ZNF280C WILD-TYPE 
               14               475 
[1] "ATIC MUTATION ANALYSIS"
[1] 3
  ATIC MUTATED ATIC WILD-TYPE 
            14            475 
  ATIC MUTATED ATIC WILD-TYPE 
            14            475 
[1] "USP16 MUTATION ANALYSIS"
[1] 3
  USP16 MUTATED USP16 WILD-TYPE 
              8             481 
  USP16 MUTATED USP16 WILD-TYPE 
              8             481 
[1] "CIR1 MUTATION ANALYSIS"
[1] 3
  CIR1 MUTATED CIR1 WILD-TYPE 
            10            479 
  CIR1 MUTATED CIR1 WILD-TYPE 
            10            479 
[1] "OR4C15 MUTATION ANALYSIS"
[1] 3
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              16              473 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              16              473 
[1] "ANK3 MUTATION ANALYSIS"
[1] 3
  ANK3 MUTATED ANK3 WILD-TYPE 
            54            435 
  ANK3 MUTATED ANK3 WILD-TYPE 
            54            435 
[1] "PPFIBP1 MUTATION ANALYSIS"
[1] 3
  PPFIBP1 MUTATED PPFIBP1 WILD-TYPE 
               14               475 
  PPFIBP1 MUTATED PPFIBP1 WILD-TYPE 
               14               475 
[1] "NTNG1 MUTATION ANALYSIS"
[1] 3
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             17             472 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             17             472 
[1] "TRPA1 MUTATION ANALYSIS"
[1] 3
  TRPA1 MUTATED TRPA1 WILD-TYPE 
             32             457 
  TRPA1 MUTATED TRPA1 WILD-TYPE 
             32             457 
[1] "CWF19L2 MUTATION ANALYSIS"
[1] 3
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
               19               470 
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
               19               470 
[1] "SERPINA9 MUTATION ANALYSIS"
[1] 3
  SERPINA9 MUTATED SERPINA9 WILD-TYPE 
                11                478 
  SERPINA9 MUTATED SERPINA9 WILD-TYPE 
                11                478 
[1] "HSP90AA1 MUTATION ANALYSIS"
[1] 3
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 9                480 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 9                480 
[1] "SATB1 MUTATION ANALYSIS"
[1] 3
  SATB1 MUTATED SATB1 WILD-TYPE 
             17             472 
  SATB1 MUTATED SATB1 WILD-TYPE 
             17             472 
[1] "FBXO45 MUTATION ANALYSIS"
[1] 3
  FBXO45 MUTATED FBXO45 WILD-TYPE 
               6              483 
  FBXO45 MUTATED FBXO45 WILD-TYPE 
               6              483 
[1] "MMP7 MUTATION ANALYSIS"
[1] 3
  MMP7 MUTATED MMP7 WILD-TYPE 
            10            479 
  MMP7 MUTATED MMP7 WILD-TYPE 
            10            479 
[1] "TMCO6 MUTATION ANALYSIS"
[1] 3
  TMCO6 MUTATED TMCO6 WILD-TYPE 
              7             482 
  TMCO6 MUTATED TMCO6 WILD-TYPE 
              7             482 
[1] "APAF1 MUTATION ANALYSIS"
[1] 3
  APAF1 MUTATED APAF1 WILD-TYPE 
             20             469 
  APAF1 MUTATED APAF1 WILD-TYPE 
             20             469 
[1] "FGB MUTATION ANALYSIS"
[1] 3
  FGB MUTATED FGB WILD-TYPE 
            6           483 
  FGB MUTATED FGB WILD-TYPE 
            6           483 
[1] "POLD3 MUTATION ANALYSIS"
[1] 3
  POLD3 MUTATED POLD3 WILD-TYPE 
             11             478 
  POLD3 MUTATED POLD3 WILD-TYPE 
             11             478 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
              21              468 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
              21              468 
[1] "ZNF605 MUTATION ANALYSIS"
[1] 3
  ZNF605 MUTATED ZNF605 WILD-TYPE 
               8              481 
  ZNF605 MUTATED ZNF605 WILD-TYPE 
               8              481 
[1] "ITPR2 MUTATION ANALYSIS"
[1] 3
  ITPR2 MUTATED ITPR2 WILD-TYPE 
             28             461 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
             28             461 
[1] "ZBTB33 MUTATION ANALYSIS"
[1] 3
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
              16              473 
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
              16              473 
[1] "PHF21A MUTATION ANALYSIS"
[1] 3
  PHF21A MUTATED PHF21A WILD-TYPE 
              12              477 
  PHF21A MUTATED PHF21A WILD-TYPE 
              12              477 
[1] "INADL MUTATION ANALYSIS"
[1] 3
  INADL MUTATED INADL WILD-TYPE 
             16             473 
  INADL MUTATED INADL WILD-TYPE 
             16             473 
[1] "DDX17 MUTATION ANALYSIS"
[1] 3
  DDX17 MUTATED DDX17 WILD-TYPE 
              8             481 
  DDX17 MUTATED DDX17 WILD-TYPE 
              8             481 
[1] "DMXL2 MUTATION ANALYSIS"
[1] 3
  DMXL2 MUTATED DMXL2 WILD-TYPE 
             37             452 
  DMXL2 MUTATED DMXL2 WILD-TYPE 
             37             452 
[1] "DPAGT1 MUTATION ANALYSIS"
[1] 3
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               8              481 
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               8              481 
[1] "SLC38A9 MUTATION ANALYSIS"
[1] 3
  SLC38A9 MUTATED SLC38A9 WILD-TYPE 
               12               477 
  SLC38A9 MUTATED SLC38A9 WILD-TYPE 
               12               477 
[1] "HIST2H2AC MUTATION ANALYSIS"
[1] 3
  HIST2H2AC MUTATED HIST2H2AC WILD-TYPE 
                  6                 483 
  HIST2H2AC MUTATED HIST2H2AC WILD-TYPE 
                  6                 483 
[1] "SLCO1B1 MUTATION ANALYSIS"
[1] 3
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
               23               466 
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
               23               466 
[1] "LBP MUTATION ANALYSIS"
[1] 3
  LBP MUTATED LBP WILD-TYPE 
            8           481 
  LBP MUTATED LBP WILD-TYPE 
            8           481 
[1] "THUMPD3 MUTATION ANALYSIS"
[1] 3
  THUMPD3 MUTATED THUMPD3 WILD-TYPE 
               12               477 
  THUMPD3 MUTATED THUMPD3 WILD-TYPE 
               12               477 
[1] "GPSM2 MUTATION ANALYSIS"
[1] 3
  GPSM2 MUTATED GPSM2 WILD-TYPE 
             13             476 
  GPSM2 MUTATED GPSM2 WILD-TYPE 
             13             476 
[1] "OR4B1 MUTATION ANALYSIS"
[1] 3
  OR4B1 MUTATED OR4B1 WILD-TYPE 
              6             483 
  OR4B1 MUTATED OR4B1 WILD-TYPE 
              6             483 
[1] "LEO1 MUTATION ANALYSIS"
[1] 3
  LEO1 MUTATED LEO1 WILD-TYPE 
            12            477 
  LEO1 MUTATED LEO1 WILD-TYPE 
            12            477 
[1] "SETX MUTATION ANALYSIS"
[1] 3
  SETX MUTATED SETX WILD-TYPE 
            34            455 
  SETX MUTATED SETX WILD-TYPE 
            34            455 
[1] "ZBTB5 MUTATION ANALYSIS"
[1] 3
  ZBTB5 MUTATED ZBTB5 WILD-TYPE 
              7             482 
  ZBTB5 MUTATED ZBTB5 WILD-TYPE 
              7             482 
[1] "C16ORF45 MUTATION ANALYSIS"
[1] 3
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 6                483 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 6                483 
[1] "HCLS1 MUTATION ANALYSIS"
[1] 3
  HCLS1 MUTATED HCLS1 WILD-TYPE 
             16             473 
  HCLS1 MUTATED HCLS1 WILD-TYPE 
             16             473 
[1] "DNAJB9 MUTATION ANALYSIS"
[1] 3
  DNAJB9 MUTATED DNAJB9 WILD-TYPE 
               6              483 
  DNAJB9 MUTATED DNAJB9 WILD-TYPE 
               6              483 
[1] "ICA1 MUTATION ANALYSIS"
[1] 3
  ICA1 MUTATED ICA1 WILD-TYPE 
             7            482 
  ICA1 MUTATED ICA1 WILD-TYPE 
             7            482 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
               24               465 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
               24               465 
[1] "MTOR MUTATION ANALYSIS"
[1] 3
  MTOR MUTATED MTOR WILD-TYPE 
            38            451 
  MTOR MUTATED MTOR WILD-TYPE 
            38            451 
[1] "RNF219 MUTATION ANALYSIS"
[1] 3
  RNF219 MUTATED RNF219 WILD-TYPE 
              19              470 
  RNF219 MUTATED RNF219 WILD-TYPE 
              19              470 
[1] "KIAA0528 MUTATION ANALYSIS"
[1] 3
  KIAA0528 MUTATED KIAA0528 WILD-TYPE 
                17                472 
  KIAA0528 MUTATED KIAA0528 WILD-TYPE 
                17                472 
[1] "GABPA MUTATION ANALYSIS"
[1] 3
  GABPA MUTATED GABPA WILD-TYPE 
             12             477 
  GABPA MUTATED GABPA WILD-TYPE 
             12             477 
[1] "PPP2R2B MUTATION ANALYSIS"
[1] 3
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
               11               478 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
               11               478 
[1] "NEK1 MUTATION ANALYSIS"
[1] 3
  NEK1 MUTATED NEK1 WILD-TYPE 
            14            475 
  NEK1 MUTATED NEK1 WILD-TYPE 
            14            475 
[1] "CEACAM6 MUTATION ANALYSIS"
[1] 3
  CEACAM6 MUTATED CEACAM6 WILD-TYPE 
                4               485 
  CEACAM6 MUTATED CEACAM6 WILD-TYPE 
                4               485 
[1] "MED14 MUTATION ANALYSIS"
[1] 3
  MED14 MUTATED MED14 WILD-TYPE 
             19             470 
  MED14 MUTATED MED14 WILD-TYPE 
             19             470 
[1] "AGTR2 MUTATION ANALYSIS"
[1] 3
  AGTR2 MUTATED AGTR2 WILD-TYPE 
             17             472 
  AGTR2 MUTATED AGTR2 WILD-TYPE 
             17             472 
[1] "COL4A6 MUTATION ANALYSIS"
[1] 3
  COL4A6 MUTATED COL4A6 WILD-TYPE 
              22              467 
  COL4A6 MUTATED COL4A6 WILD-TYPE 
              22              467 
[1] "KRTAP12-3 MUTATION ANALYSIS"
[1] 3
  KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE 
                  3                 486 
  KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE 
                  3                 486 
[1] "EMR3 MUTATION ANALYSIS"
[1] 3
  EMR3 MUTATED EMR3 WILD-TYPE 
            17            472 
  EMR3 MUTATED EMR3 WILD-TYPE 
            17            472 
[1] "STAU2 MUTATION ANALYSIS"
[1] 3
  STAU2 MUTATED STAU2 WILD-TYPE 
             10             479 
  STAU2 MUTATED STAU2 WILD-TYPE 
             10             479 
[1] "GGA2 MUTATION ANALYSIS"
[1] 3
  GGA2 MUTATED GGA2 WILD-TYPE 
            13            476 
  GGA2 MUTATED GGA2 WILD-TYPE 
            13            476 
[1] "ATRNL1 MUTATION ANALYSIS"
[1] 3
  ATRNL1 MUTATED ATRNL1 WILD-TYPE 
              27              462 
  ATRNL1 MUTATED ATRNL1 WILD-TYPE 
              27              462 
[1] "OSR1 MUTATION ANALYSIS"
[1] 3
  OSR1 MUTATED OSR1 WILD-TYPE 
             4            485 
  OSR1 MUTATED OSR1 WILD-TYPE 
             4            485 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            31            458 
  IRS4 MUTATED IRS4 WILD-TYPE 
            31            458 
[1] "CEL MUTATION ANALYSIS"
[1] 3
  CEL MUTATED CEL WILD-TYPE 
            9           480 
  CEL MUTATED CEL WILD-TYPE 
            9           480 
[1] "ZHX2 MUTATION ANALYSIS"
[1] 3
  ZHX2 MUTATED ZHX2 WILD-TYPE 
            20            469 
  ZHX2 MUTATED ZHX2 WILD-TYPE 
            20            469 
[1] "HEATR3 MUTATION ANALYSIS"
[1] 3
  HEATR3 MUTATED HEATR3 WILD-TYPE 
              10              479 
  HEATR3 MUTATED HEATR3 WILD-TYPE 
              10              479 
[1] "STAT3 MUTATION ANALYSIS"
[1] 3
  STAT3 MUTATED STAT3 WILD-TYPE 
              9             480 
  STAT3 MUTATED STAT3 WILD-TYPE 
              9             480 
[1] "STK35 MUTATION ANALYSIS"
[1] 3
  STK35 MUTATED STK35 WILD-TYPE 
              6             483 
  STK35 MUTATED STK35 WILD-TYPE 
              6             483 
[1] "ASB11 MUTATION ANALYSIS"
[1] 3
  ASB11 MUTATED ASB11 WILD-TYPE 
              8             481 
  ASB11 MUTATED ASB11 WILD-TYPE 
              8             481 
[1] "C7ORF50 MUTATION ANALYSIS"
[1] 3
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
                5               484 
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
                5               484 
[1] "ATP13A5 MUTATION ANALYSIS"
[1] 3
  ATP13A5 MUTATED ATP13A5 WILD-TYPE 
               27               462 
  ATP13A5 MUTATED ATP13A5 WILD-TYPE 
               27               462 
[1] "ZNF43 MUTATION ANALYSIS"
[1] 3
  ZNF43 MUTATED ZNF43 WILD-TYPE 
             22             467 
  ZNF43 MUTATED ZNF43 WILD-TYPE 
             22             467 
[1] "INPPL1 MUTATION ANALYSIS"
[1] 3
  INPPL1 MUTATED INPPL1 WILD-TYPE 
              14              475 
  INPPL1 MUTATED INPPL1 WILD-TYPE 
              14              475 
[1] "TFAP2C MUTATION ANALYSIS"
[1] 3
  TFAP2C MUTATED TFAP2C WILD-TYPE 
              11              478 
  TFAP2C MUTATED TFAP2C WILD-TYPE 
              11              478 
[1] "GAD2 MUTATION ANALYSIS"
[1] 3
  GAD2 MUTATED GAD2 WILD-TYPE 
            16            473 
  GAD2 MUTATED GAD2 WILD-TYPE 
            16            473 
[1] "CCDC66 MUTATION ANALYSIS"
[1] 3
  CCDC66 MUTATED CCDC66 WILD-TYPE 
              13              476 
  CCDC66 MUTATED CCDC66 WILD-TYPE 
              13              476 
[1] "C10ORF119 MUTATION ANALYSIS"
[1] 3
  C10ORF119 MUTATED C10ORF119 WILD-TYPE 
                  9                 480 
  C10ORF119 MUTATED C10ORF119 WILD-TYPE 
                  9                 480 
[1] "ZMYND8 MUTATION ANALYSIS"
[1] 3
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
              29              460 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
              29              460 
[1] "NFASC MUTATION ANALYSIS"
[1] 3
  NFASC MUTATED NFASC WILD-TYPE 
             35             454 
  NFASC MUTATED NFASC WILD-TYPE 
             35             454 
[1] "ACTA1 MUTATION ANALYSIS"
[1] 3
  ACTA1 MUTATED ACTA1 WILD-TYPE 
             14             475 
  ACTA1 MUTATED ACTA1 WILD-TYPE 
             14             475 
[1] "LYG1 MUTATION ANALYSIS"
[1] 3
  LYG1 MUTATED LYG1 WILD-TYPE 
             6            483 
  LYG1 MUTATED LYG1 WILD-TYPE 
             6            483 
[1] "EXPH5 MUTATION ANALYSIS"
[1] 3
  EXPH5 MUTATED EXPH5 WILD-TYPE 
             24             465 
  EXPH5 MUTATED EXPH5 WILD-TYPE 
             24             465 
[1] "LEPRE1 MUTATION ANALYSIS"
[1] 3
  LEPRE1 MUTATED LEPRE1 WILD-TYPE 
               9              480 
  LEPRE1 MUTATED LEPRE1 WILD-TYPE 
               9              480 
[1] "COL6A5 MUTATION ANALYSIS"
[1] 3
  COL6A5 MUTATED COL6A5 WILD-TYPE 
              36              453 
  COL6A5 MUTATED COL6A5 WILD-TYPE 
              36              453 
[1] "RAB3C MUTATION ANALYSIS"
[1] 3
  RAB3C MUTATED RAB3C WILD-TYPE 
             15             474 
  RAB3C MUTATED RAB3C WILD-TYPE 
             15             474 
[1] "MAP2K1 MUTATION ANALYSIS"
[1] 3
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
              12              477 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
              12              477 
[1] "RRAS2 MUTATION ANALYSIS"
[1] 3
  RRAS2 MUTATED RRAS2 WILD-TYPE 
              7             482 
  RRAS2 MUTATED RRAS2 WILD-TYPE 
              7             482 
[1] "TMLHE MUTATION ANALYSIS"
[1] 3
  TMLHE MUTATED TMLHE WILD-TYPE 
              5             484 
  TMLHE MUTATED TMLHE WILD-TYPE 
              5             484 
[1] "UGT1A1 MUTATION ANALYSIS"
[1] 3
  UGT1A1 MUTATED UGT1A1 WILD-TYPE 
              11              478 
  UGT1A1 MUTATED UGT1A1 WILD-TYPE 
              11              478 
[1] "NCR3 MUTATION ANALYSIS"
[1] 3
  NCR3 MUTATED NCR3 WILD-TYPE 
             5            484 
  NCR3 MUTATED NCR3 WILD-TYPE 
             5            484 
[1] "AP1M1 MUTATION ANALYSIS"
[1] 3
  AP1M1 MUTATED AP1M1 WILD-TYPE 
              9             480 
  AP1M1 MUTATED AP1M1 WILD-TYPE 
              9             480 
[1] "FBXL4 MUTATION ANALYSIS"
[1] 3
  FBXL4 MUTATED FBXL4 WILD-TYPE 
              8             481 
  FBXL4 MUTATED FBXL4 WILD-TYPE 
              8             481 
[1] "KRT222 MUTATION ANALYSIS"
[1] 3
  KRT222 MUTATED KRT222 WILD-TYPE 
               8              481 
  KRT222 MUTATED KRT222 WILD-TYPE 
               8              481 
[1] "CDC42BPA MUTATION ANALYSIS"
[1] 3
  CDC42BPA MUTATED CDC42BPA WILD-TYPE 
                30                459 
  CDC42BPA MUTATED CDC42BPA WILD-TYPE 
                30                459 
[1] "USP44 MUTATION ANALYSIS"
[1] 3
  USP44 MUTATED USP44 WILD-TYPE 
             17             472 
  USP44 MUTATED USP44 WILD-TYPE 
             17             472 
[1] "PLCG2 MUTATION ANALYSIS"
[1] 3
  PLCG2 MUTATED PLCG2 WILD-TYPE 
             21             468 
  PLCG2 MUTATED PLCG2 WILD-TYPE 
             21             468 
[1] "RDBP MUTATION ANALYSIS"
[1] 3
  RDBP MUTATED RDBP WILD-TYPE 
             7            482 
  RDBP MUTATED RDBP WILD-TYPE 
             7            482 
[1] "RAPGEF2 MUTATION ANALYSIS"
[1] 3
  RAPGEF2 MUTATED RAPGEF2 WILD-TYPE 
               24               465 
  RAPGEF2 MUTATED RAPGEF2 WILD-TYPE 
               24               465 
[1] "GDA MUTATION ANALYSIS"
[1] 3
  GDA MUTATED GDA WILD-TYPE 
            7           482 
  GDA MUTATED GDA WILD-TYPE 
            7           482 
[1] "PEBP4 MUTATION ANALYSIS"
[1] 3
  PEBP4 MUTATED PEBP4 WILD-TYPE 
              7             482 
  PEBP4 MUTATED PEBP4 WILD-TYPE 
              7             482 
[1] "CYP2A6 MUTATION ANALYSIS"
[1] 3
  CYP2A6 MUTATED CYP2A6 WILD-TYPE 
              12              477 
  CYP2A6 MUTATED CYP2A6 WILD-TYPE 
              12              477 
[1] "DEK MUTATION ANALYSIS"
[1] 3
  DEK MUTATED DEK WILD-TYPE 
            6           483 
  DEK MUTATED DEK WILD-TYPE 
            6           483 
[1] "HAUS1 MUTATION ANALYSIS"
[1] 3
  HAUS1 MUTATED HAUS1 WILD-TYPE 
              6             483 
  HAUS1 MUTATED HAUS1 WILD-TYPE 
              6             483 
[1] "DBF4B MUTATION ANALYSIS"
[1] 3
  DBF4B MUTATED DBF4B WILD-TYPE 
              7             482 
  DBF4B MUTATED DBF4B WILD-TYPE 
              7             482 
[1] "PLA2G15 MUTATION ANALYSIS"
[1] 3
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
                6               483 
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
                6               483 
[1] "STAT5B MUTATION ANALYSIS"
[1] 3
  STAT5B MUTATED STAT5B WILD-TYPE 
              13              476 
  STAT5B MUTATED STAT5B WILD-TYPE 
              13              476 
[1] "NCOA5 MUTATION ANALYSIS"
[1] 3
  NCOA5 MUTATED NCOA5 WILD-TYPE 
             13             476 
  NCOA5 MUTATED NCOA5 WILD-TYPE 
             13             476 
[1] "MR1 MUTATION ANALYSIS"
[1] 3
  MR1 MUTATED MR1 WILD-TYPE 
            7           482 
  MR1 MUTATED MR1 WILD-TYPE 
            7           482 
[1] "FAM155B MUTATION ANALYSIS"
[1] 3
  FAM155B MUTATED FAM155B WILD-TYPE 
                8               481 
  FAM155B MUTATED FAM155B WILD-TYPE 
                8               481 
[1] "MCF2 MUTATION ANALYSIS"
[1] 3
  MCF2 MUTATED MCF2 WILD-TYPE 
            32            457 
  MCF2 MUTATED MCF2 WILD-TYPE 
            32            457 
[1] "PSD3 MUTATION ANALYSIS"
[1] 3
  PSD3 MUTATED PSD3 WILD-TYPE 
            11            478 
  PSD3 MUTATED PSD3 WILD-TYPE 
            11            478 
[1] "ARHGAP27 MUTATION ANALYSIS"
[1] 3
  ARHGAP27 MUTATED ARHGAP27 WILD-TYPE 
                12                477 
  ARHGAP27 MUTATED ARHGAP27 WILD-TYPE 
                12                477 
[1] "C20ORF117 MUTATION ANALYSIS"
[1] 3
  C20ORF117 MUTATED C20ORF117 WILD-TYPE 
                 18                 471 
  C20ORF117 MUTATED C20ORF117 WILD-TYPE 
                 18                 471 
[1] "NKTR MUTATION ANALYSIS"
[1] 3
  NKTR MUTATED NKTR WILD-TYPE 
            14            475 
  NKTR MUTATED NKTR WILD-TYPE 
            14            475 
[1] "KLF5 MUTATION ANALYSIS"
[1] 3
  KLF5 MUTATED KLF5 WILD-TYPE 
            12            477 
  KLF5 MUTATED KLF5 WILD-TYPE 
            12            477 
[1] "PARG MUTATION ANALYSIS"
[1] 3
  PARG MUTATED PARG WILD-TYPE 
            12            477 
  PARG MUTATED PARG WILD-TYPE 
            12            477 
[1] "OR6A2 MUTATION ANALYSIS"
[1] 3
  OR6A2 MUTATED OR6A2 WILD-TYPE 
              8             481 
  OR6A2 MUTATED OR6A2 WILD-TYPE 
              8             481 
[1] "MAGI1 MUTATION ANALYSIS"
[1] 3
  MAGI1 MUTATED MAGI1 WILD-TYPE 
             26             463 
  MAGI1 MUTATED MAGI1 WILD-TYPE 
             26             463 
[1] "CALCOCO2 MUTATION ANALYSIS"
[1] 3
  CALCOCO2 MUTATED CALCOCO2 WILD-TYPE 
                 8                481 
  CALCOCO2 MUTATED CALCOCO2 WILD-TYPE 
                 8                481 
[1] "IKBKE MUTATION ANALYSIS"
[1] 3
  IKBKE MUTATED IKBKE WILD-TYPE 
              8             481 
  IKBKE MUTATED IKBKE WILD-TYPE 
              8             481 
[1] "SLC44A4 MUTATION ANALYSIS"
[1] 3
  SLC44A4 MUTATED SLC44A4 WILD-TYPE 
               12               477 
  SLC44A4 MUTATED SLC44A4 WILD-TYPE 
               12               477 
[1] "GANAB MUTATION ANALYSIS"
[1] 3
  GANAB MUTATED GANAB WILD-TYPE 
             14             475 
  GANAB MUTATED GANAB WILD-TYPE 
             14             475 
[1] "SAMD9L MUTATION ANALYSIS"
[1] 3
  SAMD9L MUTATED SAMD9L WILD-TYPE 
              30              459 
  SAMD9L MUTATED SAMD9L WILD-TYPE 
              30              459 
[1] "CLPTM1 MUTATION ANALYSIS"
[1] 3
  CLPTM1 MUTATED CLPTM1 WILD-TYPE 
              12              477 
  CLPTM1 MUTATED CLPTM1 WILD-TYPE 
              12              477 
[1] "SCARA5 MUTATION ANALYSIS"
[1] 3
  SCARA5 MUTATED SCARA5 WILD-TYPE 
              15              474 
  SCARA5 MUTATED SCARA5 WILD-TYPE 
              15              474 
[1] "RAPGEF6 MUTATION ANALYSIS"
[1] 3
  RAPGEF6 MUTATED RAPGEF6 WILD-TYPE 
               20               469 
  RAPGEF6 MUTATED RAPGEF6 WILD-TYPE 
               20               469 
[1] "CEP164 MUTATION ANALYSIS"
[1] 3
  CEP164 MUTATED CEP164 WILD-TYPE 
              25              464 
  CEP164 MUTATED CEP164 WILD-TYPE 
              25              464 
[1] "PAK4 MUTATION ANALYSIS"
[1] 3
  PAK4 MUTATED PAK4 WILD-TYPE 
             6            483 
  PAK4 MUTATED PAK4 WILD-TYPE 
             6            483 
[1] "DIMT1L MUTATION ANALYSIS"
[1] 3
  DIMT1L MUTATED DIMT1L WILD-TYPE 
               6              483 
  DIMT1L MUTATED DIMT1L WILD-TYPE 
               6              483 
[1] "TAF2 MUTATION ANALYSIS"
[1] 3
  TAF2 MUTATED TAF2 WILD-TYPE 
            20            469 
  TAF2 MUTATED TAF2 WILD-TYPE 
            20            469 
[1] "NR3C1 MUTATION ANALYSIS"
[1] 3
  NR3C1 MUTATED NR3C1 WILD-TYPE 
             10             479 
  NR3C1 MUTATED NR3C1 WILD-TYPE 
             10             479 
[1] "HEATR4 MUTATION ANALYSIS"
[1] 3
  HEATR4 MUTATED HEATR4 WILD-TYPE 
              17              472 
  HEATR4 MUTATED HEATR4 WILD-TYPE 
              17              472 
[1] "BCAR3 MUTATION ANALYSIS"
[1] 3
  BCAR3 MUTATED BCAR3 WILD-TYPE 
             13             476 
  BCAR3 MUTATED BCAR3 WILD-TYPE 
             13             476 
[1] "OR2T34 MUTATION ANALYSIS"
[1] 3
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               6              483 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               6              483 
[1] "POLDIP3 MUTATION ANALYSIS"
[1] 3
  POLDIP3 MUTATED POLDIP3 WILD-TYPE 
                7               482 
  POLDIP3 MUTATED POLDIP3 WILD-TYPE 
                7               482 
[1] "PNPLA8 MUTATION ANALYSIS"
[1] 3
  PNPLA8 MUTATED PNPLA8 WILD-TYPE 
              19              470 
  PNPLA8 MUTATED PNPLA8 WILD-TYPE 
              19              470 
[1] "C7ORF60 MUTATION ANALYSIS"
[1] 3
  C7ORF60 MUTATED C7ORF60 WILD-TYPE 
                6               483 
  C7ORF60 MUTATED C7ORF60 WILD-TYPE 
                6               483 
[1] "SLC25A17 MUTATION ANALYSIS"
[1] 3
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 8                481 
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 8                481 
[1] "KRTAP10-11 MUTATION ANALYSIS"
[1] 3
  KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE 
                   6                  483 
  KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE 
                   6                  483 
[1] "GTF3C1 MUTATION ANALYSIS"
[1] 3
  GTF3C1 MUTATED GTF3C1 WILD-TYPE 
              30              459 
  GTF3C1 MUTATED GTF3C1 WILD-TYPE 
              30              459 
[1] "WAC MUTATION ANALYSIS"
[1] 3
  WAC MUTATED WAC WILD-TYPE 
           15           474 
  WAC MUTATED WAC WILD-TYPE 
           15           474 
[1] "NFKBIE MUTATION ANALYSIS"
[1] 3
  NFKBIE MUTATED NFKBIE WILD-TYPE 
               4              485 
  NFKBIE MUTATED NFKBIE WILD-TYPE 
               4              485 
[1] "RRM2B MUTATION ANALYSIS"
[1] 3
  RRM2B MUTATED RRM2B WILD-TYPE 
              5             484 
  RRM2B MUTATED RRM2B WILD-TYPE 
              5             484 
[1] "KRTAP20-1 MUTATION ANALYSIS"
[1] 3
  KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE 
                  3                 486 
  KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE 
                  3                 486 
[1] "TAF6 MUTATION ANALYSIS"
[1] 3
  TAF6 MUTATED TAF6 WILD-TYPE 
            10            479 
  TAF6 MUTATED TAF6 WILD-TYPE 
            10            479 
[1] "URGCP MUTATION ANALYSIS"
[1] 3
  URGCP MUTATED URGCP WILD-TYPE 
             18             471 
  URGCP MUTATED URGCP WILD-TYPE 
             18             471 
[1] "CHRNA3 MUTATION ANALYSIS"
[1] 3
  CHRNA3 MUTATED CHRNA3 WILD-TYPE 
              11              478 
  CHRNA3 MUTATED CHRNA3 WILD-TYPE 
              11              478 
[1] "RUNX2 MUTATION ANALYSIS"
[1] 3
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              9             480 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              9             480 
[1] "ZNF354C MUTATION ANALYSIS"
[1] 3
  ZNF354C MUTATED ZNF354C WILD-TYPE 
               18               471 
  ZNF354C MUTATED ZNF354C WILD-TYPE 
               18               471 
[1] "PACS2 MUTATION ANALYSIS"
[1] 3
  PACS2 MUTATED PACS2 WILD-TYPE 
              5             484 
  PACS2 MUTATED PACS2 WILD-TYPE 
              5             484 
[1] "HIF3A MUTATION ANALYSIS"
[1] 3
  HIF3A MUTATED HIF3A WILD-TYPE 
             15             474 
  HIF3A MUTATED HIF3A WILD-TYPE 
             15             474 
[1] "ADH7 MUTATION ANALYSIS"
[1] 3
  ADH7 MUTATED ADH7 WILD-TYPE 
             7            482 
  ADH7 MUTATED ADH7 WILD-TYPE 
             7            482 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
           104            385 
  RYR2 MUTATED RYR2 WILD-TYPE 
           104            385 
[1] "DACT1 MUTATION ANALYSIS"
[1] 3
  DACT1 MUTATED DACT1 WILD-TYPE 
             16             473 
  DACT1 MUTATED DACT1 WILD-TYPE 
             16             473 
[1] "TMC8 MUTATION ANALYSIS"
[1] 3
  TMC8 MUTATED TMC8 WILD-TYPE 
             7            482 
  TMC8 MUTATED TMC8 WILD-TYPE 
             7            482 
[1] "SULF2 MUTATION ANALYSIS"
[1] 3
  SULF2 MUTATED SULF2 WILD-TYPE 
             25             464 
  SULF2 MUTATED SULF2 WILD-TYPE 
             25             464 
[1] "AIM2 MUTATION ANALYSIS"
[1] 3
  AIM2 MUTATED AIM2 WILD-TYPE 
             9            480 
  AIM2 MUTATED AIM2 WILD-TYPE 
             9            480 
[1] "SPAG7 MUTATION ANALYSIS"
[1] 3
  SPAG7 MUTATED SPAG7 WILD-TYPE 
              3             486 
  SPAG7 MUTATED SPAG7 WILD-TYPE 
              3             486 
[1] "WDR75 MUTATION ANALYSIS"
[1] 3
  WDR75 MUTATED WDR75 WILD-TYPE 
              8             481 
  WDR75 MUTATED WDR75 WILD-TYPE 
              8             481 
[1] "CPN2 MUTATION ANALYSIS"
[1] 3
  CPN2 MUTATED CPN2 WILD-TYPE 
            10            479 
  CPN2 MUTATED CPN2 WILD-TYPE 
            10            479 
[1] "NFKBIB MUTATION ANALYSIS"
[1] 3
  NFKBIB MUTATED NFKBIB WILD-TYPE 
               5              484 
  NFKBIB MUTATED NFKBIB WILD-TYPE 
               5              484 
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
            33            456 
  ATRX MUTATED ATRX WILD-TYPE 
            33            456 
[1] "TTC24 MUTATION ANALYSIS"
[1] 3
  TTC24 MUTATED TTC24 WILD-TYPE 
              7             482 
  TTC24 MUTATED TTC24 WILD-TYPE 
              7             482 
[1] "ARMC9 MUTATION ANALYSIS"
[1] 3
  ARMC9 MUTATED ARMC9 WILD-TYPE 
              8             481 
  ARMC9 MUTATED ARMC9 WILD-TYPE 
              8             481 
[1] "SNAPC1 MUTATION ANALYSIS"
[1] 3
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               7              482 
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               7              482 
[1] "C20ORF151 MUTATION ANALYSIS"
[1] 3
  C20ORF151 MUTATED C20ORF151 WILD-TYPE 
                 11                 478 
  C20ORF151 MUTATED C20ORF151 WILD-TYPE 
                 11                 478 
[1] "DNAJC7 MUTATION ANALYSIS"
[1] 3
  DNAJC7 MUTATED DNAJC7 WILD-TYPE 
               8              481 
  DNAJC7 MUTATED DNAJC7 WILD-TYPE 
               8              481 
[1] "NUP205 MUTATION ANALYSIS"
[1] 3
  NUP205 MUTATED NUP205 WILD-TYPE 
              26              463 
  NUP205 MUTATED NUP205 WILD-TYPE 
              26              463 
[1] "TF MUTATION ANALYSIS"
[1] 3
  TF MUTATED TF WILD-TYPE 
          14          475 
  TF MUTATED TF WILD-TYPE 
          14          475 
[1] "LRRC37B MUTATION ANALYSIS"
[1] 3
  LRRC37B MUTATED LRRC37B WILD-TYPE 
                9               480 
  LRRC37B MUTATED LRRC37B WILD-TYPE 
                9               480 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
            29            460 
  BCHE MUTATED BCHE WILD-TYPE 
            29            460 
[1] "TRYX3 MUTATION ANALYSIS"
[1] 3
  TRYX3 MUTATED TRYX3 WILD-TYPE 
              7             482 
  TRYX3 MUTATED TRYX3 WILD-TYPE 
              7             482 
[1] "ZNF436 MUTATION ANALYSIS"
[1] 3
  ZNF436 MUTATED ZNF436 WILD-TYPE 
               7              482 
  ZNF436 MUTATED ZNF436 WILD-TYPE 
               7              482 
[1] "A1CF MUTATION ANALYSIS"
[1] 3
  A1CF MUTATED A1CF WILD-TYPE 
             8            481 
  A1CF MUTATED A1CF WILD-TYPE 
             8            481 
[1] "TXLNG MUTATION ANALYSIS"
[1] 3
  TXLNG MUTATED TXLNG WILD-TYPE 
             10             479 
  TXLNG MUTATED TXLNG WILD-TYPE 
             10             479 
[1] "P2RX7 MUTATION ANALYSIS"
[1] 3
  P2RX7 MUTATED P2RX7 WILD-TYPE 
             13             476 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
             13             476 
[1] "RCOR3 MUTATION ANALYSIS"
[1] 3
  RCOR3 MUTATED RCOR3 WILD-TYPE 
             13             476 
  RCOR3 MUTATED RCOR3 WILD-TYPE 
             13             476 
[1] "HMOX1 MUTATION ANALYSIS"
[1] 3
  HMOX1 MUTATED HMOX1 WILD-TYPE 
              6             483 
  HMOX1 MUTATED HMOX1 WILD-TYPE 
              6             483 
[1] "UCHL5 MUTATION ANALYSIS"
[1] 3
  UCHL5 MUTATED UCHL5 WILD-TYPE 
              5             484 
  UCHL5 MUTATED UCHL5 WILD-TYPE 
              5             484 
[1] "NTRK2 MUTATION ANALYSIS"
[1] 3
  NTRK2 MUTATED NTRK2 WILD-TYPE 
             25             464 
  NTRK2 MUTATED NTRK2 WILD-TYPE 
             25             464 
[1] "MFAP1 MUTATION ANALYSIS"
[1] 3
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              5             484 
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              5             484 
[1] "RNF215 MUTATION ANALYSIS"
[1] 3
  RNF215 MUTATED RNF215 WILD-TYPE 
               3              486 
  RNF215 MUTATED RNF215 WILD-TYPE 
               3              486 
[1] "FANCD2 MUTATION ANALYSIS"
[1] 3
  FANCD2 MUTATED FANCD2 WILD-TYPE 
              18              471 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
              18              471 
[1] "CD34 MUTATION ANALYSIS"
[1] 3
  CD34 MUTATED CD34 WILD-TYPE 
             6            483 
  CD34 MUTATED CD34 WILD-TYPE 
             6            483 
[1] "ZSWIM3 MUTATION ANALYSIS"
[1] 3
  ZSWIM3 MUTATED ZSWIM3 WILD-TYPE 
              13              476 
  ZSWIM3 MUTATED ZSWIM3 WILD-TYPE 
              13              476 
[1] "SLC16A2 MUTATION ANALYSIS"
[1] 3
  SLC16A2 MUTATED SLC16A2 WILD-TYPE 
                8               481 
  SLC16A2 MUTATED SLC16A2 WILD-TYPE 
                8               481 
[1] "DDHD2 MUTATION ANALYSIS"
[1] 3
  DDHD2 MUTATED DDHD2 WILD-TYPE 
             11             478 
  DDHD2 MUTATED DDHD2 WILD-TYPE 
             11             478 
[1] "GKN1 MUTATION ANALYSIS"
[1] 3
  GKN1 MUTATED GKN1 WILD-TYPE 
             6            483 
  GKN1 MUTATED GKN1 WILD-TYPE 
             6            483 
[1] "F2R MUTATION ANALYSIS"
[1] 3
  F2R MUTATED F2R WILD-TYPE 
           11           478 
  F2R MUTATED F2R WILD-TYPE 
           11           478 
[1] "CYP20A1 MUTATION ANALYSIS"
[1] 3
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                8               481 
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                8               481 
[1] "ZP2 MUTATION ANALYSIS"
[1] 3
  ZP2 MUTATED ZP2 WILD-TYPE 
           14           475 
  ZP2 MUTATED ZP2 WILD-TYPE 
           14           475 
[1] "RAB38 MUTATION ANALYSIS"
[1] 3
  RAB38 MUTATED RAB38 WILD-TYPE 
              5             484 
  RAB38 MUTATED RAB38 WILD-TYPE 
              5             484 
[1] "TCF7 MUTATION ANALYSIS"
[1] 3
  TCF7 MUTATED TCF7 WILD-TYPE 
            12            477 
  TCF7 MUTATED TCF7 WILD-TYPE 
            12            477 
[1] "NUFIP1 MUTATION ANALYSIS"
[1] 3
  NUFIP1 MUTATED NUFIP1 WILD-TYPE 
               8              481 
  NUFIP1 MUTATED NUFIP1 WILD-TYPE 
               8              481 
[1] "OR7D4 MUTATION ANALYSIS"
[1] 3
  OR7D4 MUTATED OR7D4 WILD-TYPE 
             10             479 
  OR7D4 MUTATED OR7D4 WILD-TYPE 
             10             479 
[1] "NUPL2 MUTATION ANALYSIS"
[1] 3
  NUPL2 MUTATED NUPL2 WILD-TYPE 
             11             478 
  NUPL2 MUTATED NUPL2 WILD-TYPE 
             11             478 
[1] "GNA14 MUTATION ANALYSIS"
[1] 3
  GNA14 MUTATED GNA14 WILD-TYPE 
             13             476 
  GNA14 MUTATED GNA14 WILD-TYPE 
             13             476 
[1] "PREX2 MUTATION ANALYSIS"
[1] 3
  PREX2 MUTATED PREX2 WILD-TYPE 
             35             454 
  PREX2 MUTATED PREX2 WILD-TYPE 
             35             454 
[1] "NEB MUTATION ANALYSIS"
[1] 3
  NEB MUTATED NEB WILD-TYPE 
           66           423 
  NEB MUTATED NEB WILD-TYPE 
           66           423 
[1] "DTX3L MUTATION ANALYSIS"
[1] 3
  DTX3L MUTATED DTX3L WILD-TYPE 
             11             478 
  DTX3L MUTATED DTX3L WILD-TYPE 
             11             478 
[1] "ARHGEF1 MUTATION ANALYSIS"
[1] 3
  ARHGEF1 MUTATED ARHGEF1 WILD-TYPE 
               15               474 
  ARHGEF1 MUTATED ARHGEF1 WILD-TYPE 
               15               474 
[1] "VPS33A MUTATION ANALYSIS"
[1] 3
  VPS33A MUTATED VPS33A WILD-TYPE 
               8              481 
  VPS33A MUTATED VPS33A WILD-TYPE 
               8              481 
[1] "FSTL4 MUTATION ANALYSIS"
[1] 3
  FSTL4 MUTATED FSTL4 WILD-TYPE 
             17             472 
  FSTL4 MUTATED FSTL4 WILD-TYPE 
             17             472 
[1] "PTPRG MUTATION ANALYSIS"
[1] 3
  PTPRG MUTATED PTPRG WILD-TYPE 
             25             464 
  PTPRG MUTATED PTPRG WILD-TYPE 
             25             464 
[1] "ATF2 MUTATION ANALYSIS"
[1] 3
  ATF2 MUTATED ATF2 WILD-TYPE 
             7            482 
  ATF2 MUTATED ATF2 WILD-TYPE 
             7            482 
[1] "CREG2 MUTATION ANALYSIS"
[1] 3
  CREG2 MUTATED CREG2 WILD-TYPE 
              5             484 
  CREG2 MUTATED CREG2 WILD-TYPE 
              5             484 
[1] "GTF2A1L MUTATION ANALYSIS"
[1] 3
  GTF2A1L MUTATED GTF2A1L WILD-TYPE 
               21               468 
  GTF2A1L MUTATED GTF2A1L WILD-TYPE 
               21               468 
[1] "MALT1 MUTATION ANALYSIS"
[1] 3
  MALT1 MUTATED MALT1 WILD-TYPE 
             12             477 
  MALT1 MUTATED MALT1 WILD-TYPE 
             12             477 
[1] "PSMD6 MUTATION ANALYSIS"
[1] 3
  PSMD6 MUTATED PSMD6 WILD-TYPE 
              8             481 
  PSMD6 MUTATED PSMD6 WILD-TYPE 
              8             481 
[1] "DLEC1 MUTATION ANALYSIS"
[1] 3
  DLEC1 MUTATED DLEC1 WILD-TYPE 
             19             470 
  DLEC1 MUTATED DLEC1 WILD-TYPE 
             19             470 
[1] "DPP8 MUTATION ANALYSIS"
[1] 3
  DPP8 MUTATED DPP8 WILD-TYPE 
            14            475 
  DPP8 MUTATED DPP8 WILD-TYPE 
            14            475 
[1] "CAPRIN1 MUTATION ANALYSIS"
[1] 3
  CAPRIN1 MUTATED CAPRIN1 WILD-TYPE 
               12               477 
  CAPRIN1 MUTATED CAPRIN1 WILD-TYPE 
               12               477 
[1] "MTA2 MUTATION ANALYSIS"
[1] 3
  MTA2 MUTATED MTA2 WILD-TYPE 
            12            477 
  MTA2 MUTATED MTA2 WILD-TYPE 
            12            477 
[1] "GFRA4 MUTATION ANALYSIS"
[1] 3
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              3             486 
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              3             486 
[1] "FGD4 MUTATION ANALYSIS"
[1] 3
  FGD4 MUTATED FGD4 WILD-TYPE 
            10            479 
  FGD4 MUTATED FGD4 WILD-TYPE 
            10            479 
[1] "HPS6 MUTATION ANALYSIS"
[1] 3
  HPS6 MUTATED HPS6 WILD-TYPE 
             7            482 
  HPS6 MUTATED HPS6 WILD-TYPE 
             7            482 
[1] "AP4B1 MUTATION ANALYSIS"
[1] 3
  AP4B1 MUTATED AP4B1 WILD-TYPE 
             12             477 
  AP4B1 MUTATED AP4B1 WILD-TYPE 
             12             477 
[1] "STK38 MUTATION ANALYSIS"
[1] 3
  STK38 MUTATED STK38 WILD-TYPE 
             11             478 
  STK38 MUTATED STK38 WILD-TYPE 
             11             478 
[1] "PRKCD MUTATION ANALYSIS"
[1] 3
  PRKCD MUTATED PRKCD WILD-TYPE 
             13             476 
  PRKCD MUTATED PRKCD WILD-TYPE 
             13             476 
[1] "HIST1H2BC MUTATION ANALYSIS"
[1] 3
  HIST1H2BC MUTATED HIST1H2BC WILD-TYPE 
                  4                 485 
  HIST1H2BC MUTATED HIST1H2BC WILD-TYPE 
                  4                 485 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             40             449 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             40             449 
[1] "LEMD1 MUTATION ANALYSIS"
[1] 3
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              3             486 
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              3             486 
[1] "RC3H2 MUTATION ANALYSIS"
[1] 3
  RC3H2 MUTATED RC3H2 WILD-TYPE 
             10             479 
  RC3H2 MUTATED RC3H2 WILD-TYPE 
             10             479 
[1] "ZFYVE16 MUTATION ANALYSIS"
[1] 3
  ZFYVE16 MUTATED ZFYVE16 WILD-TYPE 
               19               470 
  ZFYVE16 MUTATED ZFYVE16 WILD-TYPE 
               19               470 
[1] "APOBEC4 MUTATION ANALYSIS"
[1] 3
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                9               480 
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                9               480 
[1] "ARID5A MUTATION ANALYSIS"
[1] 3
  ARID5A MUTATED ARID5A WILD-TYPE 
               8              481 
  ARID5A MUTATED ARID5A WILD-TYPE 
               8              481 
[1] "CYP2C18 MUTATION ANALYSIS"
[1] 3
  CYP2C18 MUTATED CYP2C18 WILD-TYPE 
                7               482 
  CYP2C18 MUTATED CYP2C18 WILD-TYPE 
                7               482 
[1] "BEND2 MUTATION ANALYSIS"
[1] 3
  BEND2 MUTATED BEND2 WILD-TYPE 
             23             466 
  BEND2 MUTATED BEND2 WILD-TYPE 
             23             466 
[1] "KCTD9 MUTATION ANALYSIS"
[1] 3
  KCTD9 MUTATED KCTD9 WILD-TYPE 
              5             484 
  KCTD9 MUTATED KCTD9 WILD-TYPE 
              5             484 
[1] "SBDS MUTATION ANALYSIS"
[1] 3
  SBDS MUTATED SBDS WILD-TYPE 
             3            486 
  SBDS MUTATED SBDS WILD-TYPE 
             3            486 
[1] "KIFC2 MUTATION ANALYSIS"
[1] 3
  KIFC2 MUTATED KIFC2 WILD-TYPE 
              6             483 
  KIFC2 MUTATED KIFC2 WILD-TYPE 
              6             483 
[1] "PSMD11 MUTATION ANALYSIS"
[1] 3
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               8              481 
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               8              481 
[1] "PPYR1 MUTATION ANALYSIS"
[1] 3
  PPYR1 MUTATED PPYR1 WILD-TYPE 
              7             482 
  PPYR1 MUTATED PPYR1 WILD-TYPE 
              7             482 
[1] "MCM4 MUTATION ANALYSIS"
[1] 3
  MCM4 MUTATED MCM4 WILD-TYPE 
            14            475 
  MCM4 MUTATED MCM4 WILD-TYPE 
            14            475 
[1] "ARHGEF3 MUTATION ANALYSIS"
[1] 3
  ARHGEF3 MUTATED ARHGEF3 WILD-TYPE 
               11               478 
  ARHGEF3 MUTATED ARHGEF3 WILD-TYPE 
               11               478 
[1] "KLF3 MUTATION ANALYSIS"
[1] 3
  KLF3 MUTATED KLF3 WILD-TYPE 
             7            482 
  KLF3 MUTATED KLF3 WILD-TYPE 
             7            482 
[1] "SENP8 MUTATION ANALYSIS"
[1] 3
  SENP8 MUTATED SENP8 WILD-TYPE 
              4             485 
  SENP8 MUTATED SENP8 WILD-TYPE 
              4             485 
[1] "GCM2 MUTATION ANALYSIS"
[1] 3
  GCM2 MUTATED GCM2 WILD-TYPE 
            14            475 
  GCM2 MUTATED GCM2 WILD-TYPE 
            14            475 
[1] "KRT9 MUTATION ANALYSIS"
[1] 3
  KRT9 MUTATED KRT9 WILD-TYPE 
            13            476 
  KRT9 MUTATED KRT9 WILD-TYPE 
            13            476 
[1] "CHD7 MUTATION ANALYSIS"
[1] 3
  CHD7 MUTATED CHD7 WILD-TYPE 
            39            450 
  CHD7 MUTATED CHD7 WILD-TYPE 
            39            450 
[1] "CHD1 MUTATION ANALYSIS"
[1] 3
  CHD1 MUTATED CHD1 WILD-TYPE 
            25            464 
  CHD1 MUTATED CHD1 WILD-TYPE 
            25            464 
[1] "LRIG2 MUTATION ANALYSIS"
[1] 3
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              9             480 
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              9             480 
[1] "SAMD9 MUTATION ANALYSIS"
[1] 3
  SAMD9 MUTATED SAMD9 WILD-TYPE 
             29             460 
  SAMD9 MUTATED SAMD9 WILD-TYPE 
             29             460 
[1] "CROT MUTATION ANALYSIS"
[1] 3
  CROT MUTATED CROT WILD-TYPE 
            11            478 
  CROT MUTATED CROT WILD-TYPE 
            11            478 
[1] "BUB1 MUTATION ANALYSIS"
[1] 3
  BUB1 MUTATED BUB1 WILD-TYPE 
            16            473 
  BUB1 MUTATED BUB1 WILD-TYPE 
            16            473 
[1] "SULT1E1 MUTATION ANALYSIS"
[1] 3
  SULT1E1 MUTATED SULT1E1 WILD-TYPE 
                5               484 
  SULT1E1 MUTATED SULT1E1 WILD-TYPE 
                5               484 
[1] "TTBK2 MUTATION ANALYSIS"
[1] 3
  TTBK2 MUTATED TTBK2 WILD-TYPE 
             18             471 
  TTBK2 MUTATED TTBK2 WILD-TYPE 
             18             471 
[1] "SMO MUTATION ANALYSIS"
[1] 3
  SMO MUTATED SMO WILD-TYPE 
           13           476 
  SMO MUTATED SMO WILD-TYPE 
           13           476 
[1] "FBXO40 MUTATION ANALYSIS"
[1] 3
  FBXO40 MUTATED FBXO40 WILD-TYPE 
              21              468 
  FBXO40 MUTATED FBXO40 WILD-TYPE 
              21              468 
[1] "ARHGAP29 MUTATION ANALYSIS"
[1] 3
  ARHGAP29 MUTATED ARHGAP29 WILD-TYPE 
                19                470 
  ARHGAP29 MUTATED ARHGAP29 WILD-TYPE 
                19                470 
[1] "PAK2 MUTATION ANALYSIS"
[1] 3
  PAK2 MUTATED PAK2 WILD-TYPE 
            11            478 
  PAK2 MUTATED PAK2 WILD-TYPE 
            11            478 
[1] "MAOA MUTATION ANALYSIS"
[1] 3
  MAOA MUTATED MAOA WILD-TYPE 
             7            482 
  MAOA MUTATED MAOA WILD-TYPE 
             7            482 
[1] "FAM120C MUTATION ANALYSIS"
[1] 3
  FAM120C MUTATED FAM120C WILD-TYPE 
                8               481 
  FAM120C MUTATED FAM120C WILD-TYPE 
                8               481 
[1] "MED13 MUTATION ANALYSIS"
[1] 3
  MED13 MUTATED MED13 WILD-TYPE 
             22             467 
  MED13 MUTATED MED13 WILD-TYPE 
             22             467 
[1] "ALCAM MUTATION ANALYSIS"
[1] 3
  ALCAM MUTATED ALCAM WILD-TYPE 
             12             477 
  ALCAM MUTATED ALCAM WILD-TYPE 
             12             477 
[1] "MEGF8 MUTATION ANALYSIS"
[1] 3
  MEGF8 MUTATED MEGF8 WILD-TYPE 
             27             462 
  MEGF8 MUTATED MEGF8 WILD-TYPE 
             27             462 
[1] "SLIT3 MUTATION ANALYSIS"
[1] 3
  SLIT3 MUTATED SLIT3 WILD-TYPE 
             27             462 
  SLIT3 MUTATED SLIT3 WILD-TYPE 
             27             462 
[1] "KIF14 MUTATION ANALYSIS"
[1] 3
  KIF14 MUTATED KIF14 WILD-TYPE 
             13             476 
  KIF14 MUTATED KIF14 WILD-TYPE 
             13             476 
[1] "CDKL2 MUTATION ANALYSIS"
[1] 3
  CDKL2 MUTATED CDKL2 WILD-TYPE 
             11             478 
  CDKL2 MUTATED CDKL2 WILD-TYPE 
             11             478 
[1] "ITGA5 MUTATION ANALYSIS"
[1] 3
  ITGA5 MUTATED ITGA5 WILD-TYPE 
             17             472 
  ITGA5 MUTATED ITGA5 WILD-TYPE 
             17             472 
[1] "SULT1C4 MUTATION ANALYSIS"
[1] 3
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               486 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               486 
[1] "C6ORF146 MUTATION ANALYSIS"
[1] 3
  C6ORF146 MUTATED C6ORF146 WILD-TYPE 
                 8                481 
  C6ORF146 MUTATED C6ORF146 WILD-TYPE 
                 8                481 
[1] "DYM MUTATION ANALYSIS"
[1] 3
  DYM MUTATED DYM WILD-TYPE 
           10           479 
  DYM MUTATED DYM WILD-TYPE 
           10           479 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             45             444 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             45             444 
[1] "MRE11A MUTATION ANALYSIS"
[1] 3
  MRE11A MUTATED MRE11A WILD-TYPE 
              14              475 
  MRE11A MUTATED MRE11A WILD-TYPE 
              14              475 
[1] "CASP10 MUTATION ANALYSIS"
[1] 3
  CASP10 MUTATED CASP10 WILD-TYPE 
               7              482 
  CASP10 MUTATED CASP10 WILD-TYPE 
               7              482 
[1] "TSHZ1 MUTATION ANALYSIS"
[1] 3
  TSHZ1 MUTATED TSHZ1 WILD-TYPE 
             13             476 
  TSHZ1 MUTATED TSHZ1 WILD-TYPE 
             13             476 
[1] "CCDC158 MUTATION ANALYSIS"
[1] 3
  CCDC158 MUTATED CCDC158 WILD-TYPE 
               19               470 
  CCDC158 MUTATED CCDC158 WILD-TYPE 
               19               470 
[1] "BRD2 MUTATION ANALYSIS"
[1] 3
  BRD2 MUTATED BRD2 WILD-TYPE 
            12            477 
  BRD2 MUTATED BRD2 WILD-TYPE 
            12            477 
[1] "KIAA2022 MUTATION ANALYSIS"
[1] 3
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                39                450 
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                39                450 
[1] "GRM1 MUTATION ANALYSIS"
[1] 3
  GRM1 MUTATED GRM1 WILD-TYPE 
            32            457 
  GRM1 MUTATED GRM1 WILD-TYPE 
            32            457 
[1] "WFDC10B MUTATION ANALYSIS"
[1] 3
  WFDC10B MUTATED WFDC10B WILD-TYPE 
                5               484 
  WFDC10B MUTATED WFDC10B WILD-TYPE 
                5               484 
[1] "KIAA0240 MUTATION ANALYSIS"
[1] 3
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                11                478 
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                11                478 
[1] "PSMB8 MUTATION ANALYSIS"
[1] 3
  PSMB8 MUTATED PSMB8 WILD-TYPE 
              7             482 
  PSMB8 MUTATED PSMB8 WILD-TYPE 
              7             482 
[1] "BTF3L4 MUTATION ANALYSIS"
[1] 3
  BTF3L4 MUTATED BTF3L4 WILD-TYPE 
               5              484 
  BTF3L4 MUTATED BTF3L4 WILD-TYPE 
               5              484 
[1] "SYNGR4 MUTATION ANALYSIS"
[1] 3
  SYNGR4 MUTATED SYNGR4 WILD-TYPE 
               6              483 
  SYNGR4 MUTATED SYNGR4 WILD-TYPE 
               6              483 
[1] "OR2AE1 MUTATION ANALYSIS"
[1] 3
  OR2AE1 MUTATED OR2AE1 WILD-TYPE 
               3              486 
  OR2AE1 MUTATED OR2AE1 WILD-TYPE 
               3              486 
[1] "SMAP1 MUTATION ANALYSIS"
[1] 3
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              3             486 
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              3             486 
[1] "GON4L MUTATION ANALYSIS"
[1] 3
  GON4L MUTATED GON4L WILD-TYPE 
             23             466 
  GON4L MUTATED GON4L WILD-TYPE 
             23             466 
[1] "NDST3 MUTATION ANALYSIS"
[1] 3
  NDST3 MUTATED NDST3 WILD-TYPE 
             18             471 
  NDST3 MUTATED NDST3 WILD-TYPE 
             18             471 
[1] "MAGEA4 MUTATION ANALYSIS"
[1] 3
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               7              482 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               7              482 
[1] "RPS6KA5 MUTATION ANALYSIS"
[1] 3
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
               11               478 
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
               11               478 
[1] "KLHL34 MUTATION ANALYSIS"
[1] 3
  KLHL34 MUTATED KLHL34 WILD-TYPE 
              13              476 
  KLHL34 MUTATED KLHL34 WILD-TYPE 
              13              476 
[1] "EIF2AK3 MUTATION ANALYSIS"
[1] 3
  EIF2AK3 MUTATED EIF2AK3 WILD-TYPE 
               12               477 
  EIF2AK3 MUTATED EIF2AK3 WILD-TYPE 
               12               477 
[1] "CDC73 MUTATION ANALYSIS"
[1] 3
  CDC73 MUTATED CDC73 WILD-TYPE 
             22             467 
  CDC73 MUTATED CDC73 WILD-TYPE 
             22             467 
[1] "MYH15 MUTATION ANALYSIS"
[1] 3
  MYH15 MUTATED MYH15 WILD-TYPE 
             29             460 
  MYH15 MUTATED MYH15 WILD-TYPE 
             29             460 
[1] "SPEN MUTATION ANALYSIS"
[1] 3
  SPEN MUTATED SPEN WILD-TYPE 
            34            455 
  SPEN MUTATED SPEN WILD-TYPE 
            34            455 
[1] "IL1F8 MUTATION ANALYSIS"
[1] 3
  IL1F8 MUTATED IL1F8 WILD-TYPE 
              3             486 
  IL1F8 MUTATED IL1F8 WILD-TYPE 
              3             486 
[1] "CCR8 MUTATION ANALYSIS"
[1] 3
  CCR8 MUTATED CCR8 WILD-TYPE 
             7            482 
  CCR8 MUTATED CCR8 WILD-TYPE 
             7            482 
[1] "HSPBAP1 MUTATION ANALYSIS"
[1] 3
  HSPBAP1 MUTATED HSPBAP1 WILD-TYPE 
                8               481 
  HSPBAP1 MUTATED HSPBAP1 WILD-TYPE 
                8               481 
[1] "XG MUTATION ANALYSIS"
[1] 3
  XG MUTATED XG WILD-TYPE 
           7          482 
  XG MUTATED XG WILD-TYPE 
           7          482 
[1] "UHRF1BP1L MUTATION ANALYSIS"
[1] 3
  UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE 
                 21                 468 
  UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE 
                 21                 468 
[1] "CATSPER2 MUTATION ANALYSIS"
[1] 3
  CATSPER2 MUTATED CATSPER2 WILD-TYPE 
                 7                482 
  CATSPER2 MUTATED CATSPER2 WILD-TYPE 
                 7                482 
[1] "PPP2R5E MUTATION ANALYSIS"
[1] 3
  PPP2R5E MUTATED PPP2R5E WILD-TYPE 
                8               481 
  PPP2R5E MUTATED PPP2R5E WILD-TYPE 
                8               481 
[1] "SPOPL MUTATION ANALYSIS"
[1] 3
  SPOPL MUTATED SPOPL WILD-TYPE 
             10             479 
  SPOPL MUTATED SPOPL WILD-TYPE 
             10             479 
[1] "FCRL4 MUTATION ANALYSIS"
[1] 3
  FCRL4 MUTATED FCRL4 WILD-TYPE 
             13             476 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
             13             476 
[1] "THRAP3 MUTATION ANALYSIS"
[1] 3
  THRAP3 MUTATED THRAP3 WILD-TYPE 
              12              477 
  THRAP3 MUTATED THRAP3 WILD-TYPE 
              12              477 
[1] "ATP2B4 MUTATION ANALYSIS"
[1] 3
  ATP2B4 MUTATED ATP2B4 WILD-TYPE 
              21              468 
  ATP2B4 MUTATED ATP2B4 WILD-TYPE 
              21              468 
[1] "PCDHGA8 MUTATION ANALYSIS"
[1] 3
  PCDHGA8 MUTATED PCDHGA8 WILD-TYPE 
               18               471 
  PCDHGA8 MUTATED PCDHGA8 WILD-TYPE 
               18               471 
[1] "TRIM46 MUTATION ANALYSIS"
[1] 3
  TRIM46 MUTATED TRIM46 WILD-TYPE 
              15              474 
  TRIM46 MUTATED TRIM46 WILD-TYPE 
              15              474 
[1] "TNKS MUTATION ANALYSIS"
[1] 3
  TNKS MUTATED TNKS WILD-TYPE 
            10            479 
  TNKS MUTATED TNKS WILD-TYPE 
            10            479 
[1] "ADAM20 MUTATION ANALYSIS"
[1] 3
  ADAM20 MUTATED ADAM20 WILD-TYPE 
               6              483 
  ADAM20 MUTATED ADAM20 WILD-TYPE 
               6              483 
[1] "CDK5RAP2 MUTATION ANALYSIS"
[1] 3
  CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE 
                25                464 
  CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE 
                25                464 
[1] "NXPH1 MUTATION ANALYSIS"
[1] 3
  NXPH1 MUTATED NXPH1 WILD-TYPE 
              9             480 
  NXPH1 MUTATED NXPH1 WILD-TYPE 
              9             480 
[1] "ATP10B MUTATION ANALYSIS"
[1] 3
  ATP10B MUTATED ATP10B WILD-TYPE 
              17              472 
  ATP10B MUTATED ATP10B WILD-TYPE 
              17              472 
[1] "ERGIC1 MUTATION ANALYSIS"
[1] 3
  ERGIC1 MUTATED ERGIC1 WILD-TYPE 
               5              484 
  ERGIC1 MUTATED ERGIC1 WILD-TYPE 
               5              484 
[1] "IVD MUTATION ANALYSIS"
[1] 3
  IVD MUTATED IVD WILD-TYPE 
            6           483 
  IVD MUTATED IVD WILD-TYPE 
            6           483 
[1] "YTHDF2 MUTATION ANALYSIS"
[1] 3
  YTHDF2 MUTATED YTHDF2 WILD-TYPE 
              12              477 
  YTHDF2 MUTATED YTHDF2 WILD-TYPE 
              12              477 
[1] "KCNN4 MUTATION ANALYSIS"
[1] 3
  KCNN4 MUTATED KCNN4 WILD-TYPE 
              7             482 
  KCNN4 MUTATED KCNN4 WILD-TYPE 
              7             482 
[1] "C20ORF177 MUTATION ANALYSIS"
[1] 3
  C20ORF177 MUTATED C20ORF177 WILD-TYPE 
                 13                 476 
  C20ORF177 MUTATED C20ORF177 WILD-TYPE 
                 13                 476 
[1] "RBL1 MUTATION ANALYSIS"
[1] 3
  RBL1 MUTATED RBL1 WILD-TYPE 
            19            470 
  RBL1 MUTATED RBL1 WILD-TYPE 
            19            470 
[1] "RBM15B MUTATION ANALYSIS"
[1] 3
  RBM15B MUTATED RBM15B WILD-TYPE 
               9              480 
  RBM15B MUTATED RBM15B WILD-TYPE 
               9              480 
[1] "PCDH19 MUTATION ANALYSIS"
[1] 3
  PCDH19 MUTATED PCDH19 WILD-TYPE 
              22              467 
  PCDH19 MUTATED PCDH19 WILD-TYPE 
              22              467 
[1] "MOV10L1 MUTATION ANALYSIS"
[1] 3
  MOV10L1 MUTATED MOV10L1 WILD-TYPE 
               17               472 
  MOV10L1 MUTATED MOV10L1 WILD-TYPE 
               17               472 
[1] "FAF2 MUTATION ANALYSIS"
[1] 3
  FAF2 MUTATED FAF2 WILD-TYPE 
             8            481 
  FAF2 MUTATED FAF2 WILD-TYPE 
             8            481 
[1] "RBM15 MUTATION ANALYSIS"
[1] 3
  RBM15 MUTATED RBM15 WILD-TYPE 
             20             469 
  RBM15 MUTATED RBM15 WILD-TYPE 
             20             469 
[1] "C5ORF42 MUTATION ANALYSIS"
[1] 3
  C5ORF42 MUTATED C5ORF42 WILD-TYPE 
               41               448 
  C5ORF42 MUTATED C5ORF42 WILD-TYPE 
               41               448 
[1] "BTBD3 MUTATION ANALYSIS"
[1] 3
  BTBD3 MUTATED BTBD3 WILD-TYPE 
             13             476 
  BTBD3 MUTATED BTBD3 WILD-TYPE 
             13             476 
[1] "NOVA1 MUTATION ANALYSIS"
[1] 3
  NOVA1 MUTATED NOVA1 WILD-TYPE 
             19             470 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
             19             470 
[1] "SBSN MUTATION ANALYSIS"
[1] 3
  SBSN MUTATED SBSN WILD-TYPE 
            10            479 
  SBSN MUTATED SBSN WILD-TYPE 
            10            479 
[1] "OR8B12 MUTATION ANALYSIS"
[1] 3
  OR8B12 MUTATED OR8B12 WILD-TYPE 
               4              485 
  OR8B12 MUTATED OR8B12 WILD-TYPE 
               4              485 
[1] "AGXT2L1 MUTATION ANALYSIS"
[1] 3
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
               13               476 
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
               13               476 
[1] "JAK1 MUTATION ANALYSIS"
[1] 3
  JAK1 MUTATED JAK1 WILD-TYPE 
            20            469 
  JAK1 MUTATED JAK1 WILD-TYPE 
            20            469 
[1] "CCDC110 MUTATION ANALYSIS"
[1] 3
  CCDC110 MUTATED CCDC110 WILD-TYPE 
               14               475 
  CCDC110 MUTATED CCDC110 WILD-TYPE 
               14               475 
[1] "LMOD1 MUTATION ANALYSIS"
[1] 3
  LMOD1 MUTATED LMOD1 WILD-TYPE 
             13             476 
  LMOD1 MUTATED LMOD1 WILD-TYPE 
             13             476 
[1] "C2CD3 MUTATION ANALYSIS"
[1] 3
  C2CD3 MUTATED C2CD3 WILD-TYPE 
             17             472 
  C2CD3 MUTATED C2CD3 WILD-TYPE 
             17             472 
[1] "AFF1 MUTATION ANALYSIS"
[1] 3
  AFF1 MUTATED AFF1 WILD-TYPE 
            14            475 
  AFF1 MUTATED AFF1 WILD-TYPE 
            14            475 
[1] "MANBA MUTATION ANALYSIS"
[1] 3
  MANBA MUTATED MANBA WILD-TYPE 
             13             476 
  MANBA MUTATED MANBA WILD-TYPE 
             13             476 
[1] "PROM1 MUTATION ANALYSIS"
[1] 3
  PROM1 MUTATED PROM1 WILD-TYPE 
             16             473 
  PROM1 MUTATED PROM1 WILD-TYPE 
             16             473 
[1] "AMBRA1 MUTATION ANALYSIS"
[1] 3
  AMBRA1 MUTATED AMBRA1 WILD-TYPE 
              19              470 
  AMBRA1 MUTATED AMBRA1 WILD-TYPE 
              19              470 
[1] "TBC1D10C MUTATION ANALYSIS"
[1] 3
  TBC1D10C MUTATED TBC1D10C WILD-TYPE 
                 9                480 
  TBC1D10C MUTATED TBC1D10C WILD-TYPE 
                 9                480 
[1] "CD84 MUTATION ANALYSIS"
[1] 3
  CD84 MUTATED CD84 WILD-TYPE 
            12            477 
  CD84 MUTATED CD84 WILD-TYPE 
            12            477 
[1] "DNMT1 MUTATION ANALYSIS"
[1] 3
  DNMT1 MUTATED DNMT1 WILD-TYPE 
             24             465 
  DNMT1 MUTATED DNMT1 WILD-TYPE 
             24             465 
[1] "TUT1 MUTATION ANALYSIS"
[1] 3
  TUT1 MUTATED TUT1 WILD-TYPE 
            10            479 
  TUT1 MUTATED TUT1 WILD-TYPE 
            10            479 
[1] "OR9G4 MUTATION ANALYSIS"
[1] 3
  OR9G4 MUTATED OR9G4 WILD-TYPE 
              8             481 
  OR9G4 MUTATED OR9G4 WILD-TYPE 
              8             481 
[1] "SLC45A2 MUTATION ANALYSIS"
[1] 3
  SLC45A2 MUTATED SLC45A2 WILD-TYPE 
               11               478 
  SLC45A2 MUTATED SLC45A2 WILD-TYPE 
               11               478 
[1] "SPARCL1 MUTATION ANALYSIS"
[1] 3
  SPARCL1 MUTATED SPARCL1 WILD-TYPE 
               15               474 
  SPARCL1 MUTATED SPARCL1 WILD-TYPE 
               15               474 
[1] "NBPF14 MUTATION ANALYSIS"
[1] 3
  NBPF14 MUTATED NBPF14 WILD-TYPE 
               3              486 
  NBPF14 MUTATED NBPF14 WILD-TYPE 
               3              486 
[1] "SLC44A1 MUTATION ANALYSIS"
[1] 3
  SLC44A1 MUTATED SLC44A1 WILD-TYPE 
               10               479 
  SLC44A1 MUTATED SLC44A1 WILD-TYPE 
               10               479 
[1] "C14ORF105 MUTATION ANALYSIS"
[1] 3
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  3                 486 
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  3                 486 
[1] "CCDC141 MUTATION ANALYSIS"
[1] 3
  CCDC141 MUTATED CCDC141 WILD-TYPE 
               23               466 
  CCDC141 MUTATED CCDC141 WILD-TYPE 
               23               466 
[1] "SSX2IP MUTATION ANALYSIS"
[1] 3
  SSX2IP MUTATED SSX2IP WILD-TYPE 
               9              480 
  SSX2IP MUTATED SSX2IP WILD-TYPE 
               9              480 
[1] "CSPP1 MUTATION ANALYSIS"
[1] 3
  CSPP1 MUTATED CSPP1 WILD-TYPE 
             18             471 
  CSPP1 MUTATED CSPP1 WILD-TYPE 
             18             471 
[1] "CDS2 MUTATION ANALYSIS"
[1] 3
  CDS2 MUTATED CDS2 WILD-TYPE 
            10            479 
  CDS2 MUTATED CDS2 WILD-TYPE 
            10            479 
[1] "EPHA4 MUTATION ANALYSIS"
[1] 3
  EPHA4 MUTATED EPHA4 WILD-TYPE 
             25             464 
  EPHA4 MUTATED EPHA4 WILD-TYPE 
             25             464 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                9               480 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                9               480 
[1] "AGT MUTATION ANALYSIS"
[1] 3
  AGT MUTATED AGT WILD-TYPE 
           10           479 
  AGT MUTATED AGT WILD-TYPE 
           10           479 
[1] "ARHGEF11 MUTATION ANALYSIS"
[1] 3
  ARHGEF11 MUTATED ARHGEF11 WILD-TYPE 
                23                466 
  ARHGEF11 MUTATED ARHGEF11 WILD-TYPE 
                23                466 
[1] "MRPS22 MUTATION ANALYSIS"
[1] 3
  MRPS22 MUTATED MRPS22 WILD-TYPE 
              10              479 
  MRPS22 MUTATED MRPS22 WILD-TYPE 
              10              479 
[1] "TMEM229B MUTATION ANALYSIS"
[1] 3
  TMEM229B MUTATED TMEM229B WILD-TYPE 
                 4                485 
  TMEM229B MUTATED TMEM229B WILD-TYPE 
                 4                485 
[1] "ABCG2 MUTATION ANALYSIS"
[1] 3
  ABCG2 MUTATED ABCG2 WILD-TYPE 
             15             474 
  ABCG2 MUTATED ABCG2 WILD-TYPE 
             15             474 
[1] "TMEM168 MUTATION ANALYSIS"
[1] 3
  TMEM168 MUTATED TMEM168 WILD-TYPE 
               16               473 
  TMEM168 MUTATED TMEM168 WILD-TYPE 
               16               473 
[1] "NUDT15 MUTATION ANALYSIS"
[1] 3
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               4              485 
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               4              485 
[1] "PANK1 MUTATION ANALYSIS"
[1] 3
  PANK1 MUTATED PANK1 WILD-TYPE 
              7             482 
  PANK1 MUTATED PANK1 WILD-TYPE 
              7             482 
[1] "SYT14 MUTATION ANALYSIS"
[1] 3
  SYT14 MUTATED SYT14 WILD-TYPE 
             15             474 
  SYT14 MUTATED SYT14 WILD-TYPE 
             15             474 
[1] "ARHGAP25 MUTATION ANALYSIS"
[1] 3
  ARHGAP25 MUTATED ARHGAP25 WILD-TYPE 
                12                477 
  ARHGAP25 MUTATED ARHGAP25 WILD-TYPE 
                12                477 
[1] "HCFC1R1 MUTATION ANALYSIS"
[1] 3
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                5               484 
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                5               484 
[1] "C7ORF66 MUTATION ANALYSIS"
[1] 3
  C7ORF66 MUTATED C7ORF66 WILD-TYPE 
                8               481 
  C7ORF66 MUTATED C7ORF66 WILD-TYPE 
                8               481 
[1] "CD47 MUTATION ANALYSIS"
[1] 3
  CD47 MUTATED CD47 WILD-TYPE 
             8            481 
  CD47 MUTATED CD47 WILD-TYPE 
             8            481 
[1] "RWDD4A MUTATION ANALYSIS"
[1] 3
  RWDD4A MUTATED RWDD4A WILD-TYPE 
               5              484 
  RWDD4A MUTATED RWDD4A WILD-TYPE 
               5              484 
[1] "EPRS MUTATION ANALYSIS"
[1] 3
  EPRS MUTATED EPRS WILD-TYPE 
            23            466 
  EPRS MUTATED EPRS WILD-TYPE 
            23            466 
[1] "DUSP9 MUTATION ANALYSIS"
[1] 3
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              9             480 
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              9             480 
[1] "HIST1H1A MUTATION ANALYSIS"
[1] 3
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 9                480 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 9                480 
[1] "ZSCAN20 MUTATION ANALYSIS"
[1] 3
  ZSCAN20 MUTATED ZSCAN20 WILD-TYPE 
               17               472 
  ZSCAN20 MUTATED ZSCAN20 WILD-TYPE 
               17               472 
[1] "ERCC3 MUTATION ANALYSIS"
[1] 3
  ERCC3 MUTATED ERCC3 WILD-TYPE 
             20             469 
  ERCC3 MUTATED ERCC3 WILD-TYPE 
             20             469 
[1] "XKR3 MUTATION ANALYSIS"
[1] 3
  XKR3 MUTATED XKR3 WILD-TYPE 
            15            474 
  XKR3 MUTATED XKR3 WILD-TYPE 
            15            474 
[1] "PIGS MUTATION ANALYSIS"
[1] 3
  PIGS MUTATED PIGS WILD-TYPE 
             8            481 
  PIGS MUTATED PIGS WILD-TYPE 
             8            481 
[1] "AAMP MUTATION ANALYSIS"
[1] 3
  AAMP MUTATED AAMP WILD-TYPE 
             3            486 
  AAMP MUTATED AAMP WILD-TYPE 
             3            486 
[1] "IL21R MUTATION ANALYSIS"
[1] 3
  IL21R MUTATED IL21R WILD-TYPE 
             14             475 
  IL21R MUTATED IL21R WILD-TYPE 
             14             475 
[1] "MBP MUTATION ANALYSIS"
[1] 3
  MBP MUTATED MBP WILD-TYPE 
            6           483 
  MBP MUTATED MBP WILD-TYPE 
            6           483 
[1] "DLGAP5 MUTATION ANALYSIS"
[1] 3
  DLGAP5 MUTATED DLGAP5 WILD-TYPE 
              10              479 
  DLGAP5 MUTATED DLGAP5 WILD-TYPE 
              10              479 
[1] "MAP7 MUTATION ANALYSIS"
[1] 3
  MAP7 MUTATED MAP7 WILD-TYPE 
            14            475 
  MAP7 MUTATED MAP7 WILD-TYPE 
            14            475 
[1] "OR4A16 MUTATION ANALYSIS"
[1] 3
  OR4A16 MUTATED OR4A16 WILD-TYPE 
              15              474 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
              15              474 
[1] "IRF6 MUTATION ANALYSIS"
[1] 3
  IRF6 MUTATED IRF6 WILD-TYPE 
             6            483 
  IRF6 MUTATED IRF6 WILD-TYPE 
             6            483 
[1] "LGALS9C MUTATION ANALYSIS"
[1] 3
  LGALS9C MUTATED LGALS9C WILD-TYPE 
                6               483 
  LGALS9C MUTATED LGALS9C WILD-TYPE 
                6               483 
[1] "ZNF512 MUTATION ANALYSIS"
[1] 3
  ZNF512 MUTATED ZNF512 WILD-TYPE 
               3              486 
  ZNF512 MUTATED ZNF512 WILD-TYPE 
               3              486 
[1] "HIF1A MUTATION ANALYSIS"
[1] 3
  HIF1A MUTATED HIF1A WILD-TYPE 
             12             477 
  HIF1A MUTATED HIF1A WILD-TYPE 
             12             477 
[1] "CD79A MUTATION ANALYSIS"
[1] 3
  CD79A MUTATED CD79A WILD-TYPE 
              6             483 
  CD79A MUTATED CD79A WILD-TYPE 
              6             483 
[1] "HIVEP1 MUTATION ANALYSIS"
[1] 3
  HIVEP1 MUTATED HIVEP1 WILD-TYPE 
              20              469 
  HIVEP1 MUTATED HIVEP1 WILD-TYPE 
              20              469 
[1] "C1S MUTATION ANALYSIS"
[1] 3
  C1S MUTATED C1S WILD-TYPE 
           13           476 
  C1S MUTATED C1S WILD-TYPE 
           13           476 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
             12             477 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
             12             477 
[1] "NUP210L MUTATION ANALYSIS"
[1] 3
  NUP210L MUTATED NUP210L WILD-TYPE 
               24               465 
  NUP210L MUTATED NUP210L WILD-TYPE 
               24               465 
[1] "RRAGD MUTATION ANALYSIS"
[1] 3
  RRAGD MUTATED RRAGD WILD-TYPE 
              7             482 
  RRAGD MUTATED RRAGD WILD-TYPE 
              7             482 
[1] "BLM MUTATION ANALYSIS"
[1] 3
  BLM MUTATED BLM WILD-TYPE 
           19           470 
  BLM MUTATED BLM WILD-TYPE 
           19           470 
[1] "CLCN3 MUTATION ANALYSIS"
[1] 3
  CLCN3 MUTATED CLCN3 WILD-TYPE 
             13             476 
  CLCN3 MUTATED CLCN3 WILD-TYPE 
             13             476 
[1] "ANKRD40 MUTATION ANALYSIS"
[1] 3
  ANKRD40 MUTATED ANKRD40 WILD-TYPE 
                9               480 
  ANKRD40 MUTATED ANKRD40 WILD-TYPE 
                9               480 
[1] "SNAPC2 MUTATION ANALYSIS"
[1] 3
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               6              483 
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               6              483 
[1] "UPF3B MUTATION ANALYSIS"
[1] 3
  UPF3B MUTATED UPF3B WILD-TYPE 
             11             478 
  UPF3B MUTATED UPF3B WILD-TYPE 
             11             478 
[1] "LMTK3 MUTATION ANALYSIS"
[1] 3
  LMTK3 MUTATED LMTK3 WILD-TYPE 
             16             473 
  LMTK3 MUTATED LMTK3 WILD-TYPE 
             16             473 
[1] "FCAMR MUTATION ANALYSIS"
[1] 3
  FCAMR MUTATED FCAMR WILD-TYPE 
             12             477 
  FCAMR MUTATED FCAMR WILD-TYPE 
             12             477 
[1] "XCL2 MUTATION ANALYSIS"
[1] 3
  XCL2 MUTATED XCL2 WILD-TYPE 
             4            485 
  XCL2 MUTATED XCL2 WILD-TYPE 
             4            485 
[1] "AASS MUTATION ANALYSIS"
[1] 3
  AASS MUTATED AASS WILD-TYPE 
            13            476 
  AASS MUTATED AASS WILD-TYPE 
            13            476 
[1] "CCNH MUTATION ANALYSIS"
[1] 3
  CCNH MUTATED CCNH WILD-TYPE 
             7            482 
  CCNH MUTATED CCNH WILD-TYPE 
             7            482 
[1] "ITGA4 MUTATION ANALYSIS"
[1] 3
  ITGA4 MUTATED ITGA4 WILD-TYPE 
             17             472 
  ITGA4 MUTATED ITGA4 WILD-TYPE 
             17             472 
[1] "ST18 MUTATION ANALYSIS"
[1] 3
  ST18 MUTATED ST18 WILD-TYPE 
            27            462 
  ST18 MUTATED ST18 WILD-TYPE 
            27            462 
[1] "SECISBP2 MUTATION ANALYSIS"
[1] 3
  SECISBP2 MUTATED SECISBP2 WILD-TYPE 
                 8                481 
  SECISBP2 MUTATED SECISBP2 WILD-TYPE 
                 8                481 
[1] "GPX8 MUTATION ANALYSIS"
[1] 3
  GPX8 MUTATED GPX8 WILD-TYPE 
             3            486 
  GPX8 MUTATED GPX8 WILD-TYPE 
             3            486 
[1] "C6ORF150 MUTATION ANALYSIS"
[1] 3
  C6ORF150 MUTATED C6ORF150 WILD-TYPE 
                10                479 
  C6ORF150 MUTATED C6ORF150 WILD-TYPE 
                10                479 
[1] "NAP1L4 MUTATION ANALYSIS"
[1] 3
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              483 
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               6              483 
[1] "MANF MUTATION ANALYSIS"
[1] 3
  MANF MUTATED MANF WILD-TYPE 
             4            485 
  MANF MUTATED MANF WILD-TYPE 
             4            485 
[1] "CUX1 MUTATION ANALYSIS"
[1] 3
  CUX1 MUTATED CUX1 WILD-TYPE 
            17            472 
  CUX1 MUTATED CUX1 WILD-TYPE 
            17            472 
[1] "SLC16A5 MUTATION ANALYSIS"
[1] 3
  SLC16A5 MUTATED SLC16A5 WILD-TYPE 
               10               479 
  SLC16A5 MUTATED SLC16A5 WILD-TYPE 
               10               479 
[1] "TUBB4 MUTATION ANALYSIS"
[1] 3
  TUBB4 MUTATED TUBB4 WILD-TYPE 
              7             482 
  TUBB4 MUTATED TUBB4 WILD-TYPE 
              7             482 
[1] "SUPT3H MUTATION ANALYSIS"
[1] 3
  SUPT3H MUTATED SUPT3H WILD-TYPE 
              11              478 
  SUPT3H MUTATED SUPT3H WILD-TYPE 
              11              478 
[1] "FAM151A MUTATION ANALYSIS"
[1] 3
  FAM151A MUTATED FAM151A WILD-TYPE 
                6               483 
  FAM151A MUTATED FAM151A WILD-TYPE 
                6               483 
[1] "HERC1 MUTATION ANALYSIS"
[1] 3
  HERC1 MUTATED HERC1 WILD-TYPE 
             33             456 
  HERC1 MUTATED HERC1 WILD-TYPE 
             33             456 
[1] "TBX4 MUTATION ANALYSIS"
[1] 3
  TBX4 MUTATED TBX4 WILD-TYPE 
            11            478 
  TBX4 MUTATED TBX4 WILD-TYPE 
            11            478 
[1] "TRIP6 MUTATION ANALYSIS"
[1] 3
  TRIP6 MUTATED TRIP6 WILD-TYPE 
             11             478 
  TRIP6 MUTATED TRIP6 WILD-TYPE 
             11             478 
[1] "SERPINB5 MUTATION ANALYSIS"
[1] 3
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 6                483 
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 6                483 
[1] "HIPK3 MUTATION ANALYSIS"
[1] 3
  HIPK3 MUTATED HIPK3 WILD-TYPE 
              8             481 
  HIPK3 MUTATED HIPK3 WILD-TYPE 
              8             481 
[1] "NLRP11 MUTATION ANALYSIS"
[1] 3
  NLRP11 MUTATED NLRP11 WILD-TYPE 
              20              469 
  NLRP11 MUTATED NLRP11 WILD-TYPE 
              20              469 
[1] "DZIP1L MUTATION ANALYSIS"
[1] 3
  DZIP1L MUTATED DZIP1L WILD-TYPE 
              16              473 
  DZIP1L MUTATED DZIP1L WILD-TYPE 
              16              473 
[1] "GSG2 MUTATION ANALYSIS"
[1] 3
  GSG2 MUTATED GSG2 WILD-TYPE 
             6            483 
  GSG2 MUTATED GSG2 WILD-TYPE 
             6            483 
[1] "FAM193A MUTATION ANALYSIS"
[1] 3
  FAM193A MUTATED FAM193A WILD-TYPE 
               17               472 
  FAM193A MUTATED FAM193A WILD-TYPE 
               17               472 
[1] "ENC1 MUTATION ANALYSIS"
[1] 3
  ENC1 MUTATED ENC1 WILD-TYPE 
            13            476 
  ENC1 MUTATED ENC1 WILD-TYPE 
            13            476 
[1] "RUSC2 MUTATION ANALYSIS"
[1] 3
  RUSC2 MUTATED RUSC2 WILD-TYPE 
             13             476 
  RUSC2 MUTATED RUSC2 WILD-TYPE 
             13             476 
[1] "WHAMM MUTATION ANALYSIS"
[1] 3
  WHAMM MUTATED WHAMM WILD-TYPE 
              6             483 
  WHAMM MUTATED WHAMM WILD-TYPE 
              6             483 
[1] "TAF1 MUTATION ANALYSIS"
[1] 3
  TAF1 MUTATED TAF1 WILD-TYPE 
            26            463 
  TAF1 MUTATED TAF1 WILD-TYPE 
            26            463 
[1] "METTL5 MUTATION ANALYSIS"
[1] 3
  METTL5 MUTATED METTL5 WILD-TYPE 
               6              483 
  METTL5 MUTATED METTL5 WILD-TYPE 
               6              483 
[1] "ITPRIPL1 MUTATION ANALYSIS"
[1] 3
  ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE 
                 8                481 
  ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE 
                 8                481 
[1] "WFS1 MUTATION ANALYSIS"
[1] 3
  WFS1 MUTATED WFS1 WILD-TYPE 
            12            477 
  WFS1 MUTATED WFS1 WILD-TYPE 
            12            477 
[1] "GOT1 MUTATION ANALYSIS"
[1] 3
  GOT1 MUTATED GOT1 WILD-TYPE 
             6            483 
  GOT1 MUTATED GOT1 WILD-TYPE 
             6            483 
[1] "SRGAP3 MUTATION ANALYSIS"
[1] 3
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
              19              470 
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
              19              470 
[1] "MTMR8 MUTATION ANALYSIS"
[1] 3
  MTMR8 MUTATED MTMR8 WILD-TYPE 
             15             474 
  MTMR8 MUTATED MTMR8 WILD-TYPE 
             15             474 
[1] "GAB3 MUTATION ANALYSIS"
[1] 3
  GAB3 MUTATED GAB3 WILD-TYPE 
            12            477 
  GAB3 MUTATED GAB3 WILD-TYPE 
            12            477 
[1] "GIMAP5 MUTATION ANALYSIS"
[1] 3
  GIMAP5 MUTATED GIMAP5 WILD-TYPE 
               8              481 
  GIMAP5 MUTATED GIMAP5 WILD-TYPE 
               8              481 
[1] "ZEB1 MUTATION ANALYSIS"
[1] 3
  ZEB1 MUTATED ZEB1 WILD-TYPE 
            23            466 
  ZEB1 MUTATED ZEB1 WILD-TYPE 
            23            466 
[1] "CATSPER4 MUTATION ANALYSIS"
[1] 3
  CATSPER4 MUTATED CATSPER4 WILD-TYPE 
                13                476 
  CATSPER4 MUTATED CATSPER4 WILD-TYPE 
                13                476 
[1] "ERN1 MUTATION ANALYSIS"
[1] 3
  ERN1 MUTATED ERN1 WILD-TYPE 
             3            486 
  ERN1 MUTATED ERN1 WILD-TYPE 
             3            486 
[1] "HECW2 MUTATION ANALYSIS"
[1] 3
  HECW2 MUTATED HECW2 WILD-TYPE 
             32             457 
  HECW2 MUTATED HECW2 WILD-TYPE 
             32             457 
[1] "CASP6 MUTATION ANALYSIS"
[1] 3
  CASP6 MUTATED CASP6 WILD-TYPE 
              3             486 
  CASP6 MUTATED CASP6 WILD-TYPE 
              3             486 
[1] "CSGALNACT1 MUTATION ANALYSIS"
[1] 3
  CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE 
                   9                  480 
  CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE 
                   9                  480 
[1] "SF3B2 MUTATION ANALYSIS"
[1] 3
  SF3B2 MUTATED SF3B2 WILD-TYPE 
             10             479 
  SF3B2 MUTATED SF3B2 WILD-TYPE 
             10             479 
[1] "ZNF232 MUTATION ANALYSIS"
[1] 3
  ZNF232 MUTATED ZNF232 WILD-TYPE 
               4              485 
  ZNF232 MUTATED ZNF232 WILD-TYPE 
               4              485 
[1] "TRIM55 MUTATION ANALYSIS"
[1] 3
  TRIM55 MUTATED TRIM55 WILD-TYPE 
              19              470 
  TRIM55 MUTATED TRIM55 WILD-TYPE 
              19              470 
[1] "IFITM5 MUTATION ANALYSIS"
[1] 3
  IFITM5 MUTATED IFITM5 WILD-TYPE 
               4              485 
  IFITM5 MUTATED IFITM5 WILD-TYPE 
               4              485 
[1] "C9ORF125 MUTATION ANALYSIS"
[1] 3
  C9ORF125 MUTATED C9ORF125 WILD-TYPE 
                12                477 
  C9ORF125 MUTATED C9ORF125 WILD-TYPE 
                12                477 
[1] "IPPK MUTATION ANALYSIS"
[1] 3
  IPPK MUTATED IPPK WILD-TYPE 
             9            480 
  IPPK MUTATED IPPK WILD-TYPE 
             9            480 
[1] "ARHGEF7 MUTATION ANALYSIS"
[1] 3
  ARHGEF7 MUTATED ARHGEF7 WILD-TYPE 
               21               468 
  ARHGEF7 MUTATED ARHGEF7 WILD-TYPE 
               21               468 
[1] "WDR65 MUTATION ANALYSIS"
[1] 3
  WDR65 MUTATED WDR65 WILD-TYPE 
              6             483 
  WDR65 MUTATED WDR65 WILD-TYPE 
              6             483 
[1] "APLP1 MUTATION ANALYSIS"
[1] 3
  APLP1 MUTATED APLP1 WILD-TYPE 
             17             472 
  APLP1 MUTATED APLP1 WILD-TYPE 
             17             472 
[1] "KIAA0319 MUTATION ANALYSIS"
[1] 3
  KIAA0319 MUTATED KIAA0319 WILD-TYPE 
                17                472 
  KIAA0319 MUTATED KIAA0319 WILD-TYPE 
                17                472 
[1] "MECOM MUTATION ANALYSIS"
[1] 3
  MECOM MUTATED MECOM WILD-TYPE 
             21             468 
  MECOM MUTATED MECOM WILD-TYPE 
             21             468 
[1] "MYO3A MUTATION ANALYSIS"
[1] 3
  MYO3A MUTATED MYO3A WILD-TYPE 
             43             446 
  MYO3A MUTATED MYO3A WILD-TYPE 
             43             446 
[1] "PIK3C2G MUTATION ANALYSIS"
[1] 3
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
               23               466 
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
               23               466 
[1] "WFDC5 MUTATION ANALYSIS"
[1] 3
  WFDC5 MUTATED WFDC5 WILD-TYPE 
              5             484 
  WFDC5 MUTATED WFDC5 WILD-TYPE 
              5             484 
[1] "ABCD4 MUTATION ANALYSIS"
[1] 3
  ABCD4 MUTATED ABCD4 WILD-TYPE 
             10             479 
  ABCD4 MUTATED ABCD4 WILD-TYPE 
             10             479 
[1] "PCSK5 MUTATION ANALYSIS"
[1] 3
  PCSK5 MUTATED PCSK5 WILD-TYPE 
             15             474 
  PCSK5 MUTATED PCSK5 WILD-TYPE 
             15             474 
[1] "DLGAP3 MUTATION ANALYSIS"
[1] 3
  DLGAP3 MUTATED DLGAP3 WILD-TYPE 
              17              472 
  DLGAP3 MUTATED DLGAP3 WILD-TYPE 
              17              472 
[1] "MFSD4 MUTATION ANALYSIS"
[1] 3
  MFSD4 MUTATED MFSD4 WILD-TYPE 
              6             483 
  MFSD4 MUTATED MFSD4 WILD-TYPE 
              6             483 
[1] "HECTD2 MUTATION ANALYSIS"
[1] 3
  HECTD2 MUTATED HECTD2 WILD-TYPE 
              12              477 
  HECTD2 MUTATED HECTD2 WILD-TYPE 
              12              477 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             37             452 
  CDH18 MUTATED CDH18 WILD-TYPE 
             37             452 
[1] "SIX5 MUTATION ANALYSIS"
[1] 3
  SIX5 MUTATED SIX5 WILD-TYPE 
             5            484 
  SIX5 MUTATED SIX5 WILD-TYPE 
             5            484 
[1] "C1ORF85 MUTATION ANALYSIS"
[1] 3
  C1ORF85 MUTATED C1ORF85 WILD-TYPE 
                8               481 
  C1ORF85 MUTATED C1ORF85 WILD-TYPE 
                8               481 
[1] "NAE1 MUTATION ANALYSIS"
[1] 3
  NAE1 MUTATED NAE1 WILD-TYPE 
             9            480 
  NAE1 MUTATED NAE1 WILD-TYPE 
             9            480 
[1] "CYP3A7 MUTATION ANALYSIS"
[1] 3
  CYP3A7 MUTATED CYP3A7 WILD-TYPE 
              12              477 
  CYP3A7 MUTATED CYP3A7 WILD-TYPE 
              12              477 
[1] "DEFB129 MUTATION ANALYSIS"
[1] 3
  DEFB129 MUTATED DEFB129 WILD-TYPE 
                5               484 
  DEFB129 MUTATED DEFB129 WILD-TYPE 
                5               484 
[1] "EFNB3 MUTATION ANALYSIS"
[1] 3
  EFNB3 MUTATED EFNB3 WILD-TYPE 
              9             480 
  EFNB3 MUTATED EFNB3 WILD-TYPE 
              9             480 
[1] "DYRK3 MUTATION ANALYSIS"
[1] 3
  DYRK3 MUTATED DYRK3 WILD-TYPE 
             16             473 
  DYRK3 MUTATED DYRK3 WILD-TYPE 
             16             473 
[1] "ZBTB24 MUTATION ANALYSIS"
[1] 3
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
              11              478 
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
              11              478 
[1] "TNRC6B MUTATION ANALYSIS"
[1] 3
  TNRC6B MUTATED TNRC6B WILD-TYPE 
              23              466 
  TNRC6B MUTATED TNRC6B WILD-TYPE 
              23              466 
[1] "PAK1 MUTATION ANALYSIS"
[1] 3
  PAK1 MUTATED PAK1 WILD-TYPE 
            11            478 
  PAK1 MUTATED PAK1 WILD-TYPE 
            11            478 
[1] "PODXL MUTATION ANALYSIS"
[1] 3
  PODXL MUTATED PODXL WILD-TYPE 
             10             479 
  PODXL MUTATED PODXL WILD-TYPE 
             10             479 
[1] "OR5AK2 MUTATION ANALYSIS"
[1] 3
  OR5AK2 MUTATED OR5AK2 WILD-TYPE 
               9              480 
  OR5AK2 MUTATED OR5AK2 WILD-TYPE 
               9              480 
[1] "LGALS9 MUTATION ANALYSIS"
[1] 3
  LGALS9 MUTATED LGALS9 WILD-TYPE 
               5              484 
  LGALS9 MUTATED LGALS9 WILD-TYPE 
               5              484 
[1] "IRGQ MUTATION ANALYSIS"
[1] 3
  IRGQ MUTATED IRGQ WILD-TYPE 
             5            484 
  IRGQ MUTATED IRGQ WILD-TYPE 
             5            484 
[1] "NLRP1 MUTATION ANALYSIS"
[1] 3
  NLRP1 MUTATED NLRP1 WILD-TYPE 
             28             461 
  NLRP1 MUTATED NLRP1 WILD-TYPE 
             28             461 
[1] "TPR MUTATION ANALYSIS"
[1] 3
  TPR MUTATED TPR WILD-TYPE 
           25           464 
  TPR MUTATED TPR WILD-TYPE 
           25           464 
[1] "METT5D1 MUTATION ANALYSIS"
[1] 3
  METT5D1 MUTATED METT5D1 WILD-TYPE 
                7               482 
  METT5D1 MUTATED METT5D1 WILD-TYPE 
                7               482 
[1] "BCAP29 MUTATION ANALYSIS"
[1] 3
  BCAP29 MUTATED BCAP29 WILD-TYPE 
               8              481 
  BCAP29 MUTATED BCAP29 WILD-TYPE 
               8              481 
[1] "MSH5 MUTATION ANALYSIS"
[1] 3
  MSH5 MUTATED MSH5 WILD-TYPE 
             8            481 
  MSH5 MUTATED MSH5 WILD-TYPE 
             8            481 
[1] "BTBD11 MUTATION ANALYSIS"
[1] 3
  BTBD11 MUTATED BTBD11 WILD-TYPE 
              23              466 
  BTBD11 MUTATED BTBD11 WILD-TYPE 
              23              466 
[1] "ATAD1 MUTATION ANALYSIS"
[1] 3
  ATAD1 MUTATED ATAD1 WILD-TYPE 
              9             480 
  ATAD1 MUTATED ATAD1 WILD-TYPE 
              9             480 
[1] "PRPF4B MUTATION ANALYSIS"
[1] 3
  PRPF4B MUTATED PRPF4B WILD-TYPE 
              16              473 
  PRPF4B MUTATED PRPF4B WILD-TYPE 
              16              473 
[1] "ARHGEF6 MUTATION ANALYSIS"
[1] 3
  ARHGEF6 MUTATED ARHGEF6 WILD-TYPE 
               15               474 
  ARHGEF6 MUTATED ARHGEF6 WILD-TYPE 
               15               474 
[1] "HK3 MUTATION ANALYSIS"
[1] 3
  HK3 MUTATED HK3 WILD-TYPE 
           22           467 
  HK3 MUTATED HK3 WILD-TYPE 
           22           467 
[1] "OR5R1 MUTATION ANALYSIS"
[1] 3
  OR5R1 MUTATED OR5R1 WILD-TYPE 
             14             475 
  OR5R1 MUTATED OR5R1 WILD-TYPE 
             14             475 
[1] "TCEANC MUTATION ANALYSIS"
[1] 3
  TCEANC MUTATED TCEANC WILD-TYPE 
               9              480 
  TCEANC MUTATED TCEANC WILD-TYPE 
               9              480 
[1] "GJA10 MUTATION ANALYSIS"
[1] 3
  GJA10 MUTATED GJA10 WILD-TYPE 
             14             475 
  GJA10 MUTATED GJA10 WILD-TYPE 
             14             475 
[1] "AP1G1 MUTATION ANALYSIS"
[1] 3
  AP1G1 MUTATED AP1G1 WILD-TYPE 
             13             476 
  AP1G1 MUTATED AP1G1 WILD-TYPE 
             13             476 
[1] "PLEKHA3 MUTATION ANALYSIS"
[1] 3
  PLEKHA3 MUTATED PLEKHA3 WILD-TYPE 
                8               481 
  PLEKHA3 MUTATED PLEKHA3 WILD-TYPE 
                8               481 
[1] "PCNA MUTATION ANALYSIS"
[1] 3
  PCNA MUTATED PCNA WILD-TYPE 
             5            484 
  PCNA MUTATED PCNA WILD-TYPE 
             5            484 
[1] "ABCB6 MUTATION ANALYSIS"
[1] 3
  ABCB6 MUTATED ABCB6 WILD-TYPE 
              8             481 
  ABCB6 MUTATED ABCB6 WILD-TYPE 
              8             481 
[1] "GGNBP2 MUTATION ANALYSIS"
[1] 3
  GGNBP2 MUTATED GGNBP2 WILD-TYPE 
              13              476 
  GGNBP2 MUTATED GGNBP2 WILD-TYPE 
              13              476 
[1] "CCDC3 MUTATION ANALYSIS"
[1] 3
  CCDC3 MUTATED CCDC3 WILD-TYPE 
              5             484 
  CCDC3 MUTATED CCDC3 WILD-TYPE 
              5             484 
[1] "TATDN2 MUTATION ANALYSIS"
[1] 3
  TATDN2 MUTATED TATDN2 WILD-TYPE 
              12              477 
  TATDN2 MUTATED TATDN2 WILD-TYPE 
              12              477 
[1] "USP1 MUTATION ANALYSIS"
[1] 3
  USP1 MUTATED USP1 WILD-TYPE 
             9            480 
  USP1 MUTATED USP1 WILD-TYPE 
             9            480 
[1] "IFLTD1 MUTATION ANALYSIS"
[1] 3
  IFLTD1 MUTATED IFLTD1 WILD-TYPE 
              13              476 
  IFLTD1 MUTATED IFLTD1 WILD-TYPE 
              13              476 
[1] "TLX1NB MUTATION ANALYSIS"
[1] 3
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               3              486 
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               3              486 
[1] "ZNF323 MUTATION ANALYSIS"
[1] 3
  ZNF323 MUTATED ZNF323 WILD-TYPE 
              11              478 
  ZNF323 MUTATED ZNF323 WILD-TYPE 
              11              478 
[1] "ANAPC16 MUTATION ANALYSIS"
[1] 3
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                3               486 
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                3               486 
[1] "AKAP7 MUTATION ANALYSIS"
[1] 3
  AKAP7 MUTATED AKAP7 WILD-TYPE 
              6             483 
  AKAP7 MUTATED AKAP7 WILD-TYPE 
              6             483 
[1] "MUM1L1 MUTATION ANALYSIS"
[1] 3
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              16              473 
  MUM1L1 MUTATED MUM1L1 WILD-TYPE 
              16              473 
[1] "ISOC2 MUTATION ANALYSIS"
[1] 3
  ISOC2 MUTATED ISOC2 WILD-TYPE 
              5             484 
  ISOC2 MUTATED ISOC2 WILD-TYPE 
              5             484 
[1] "GLTSCR1 MUTATION ANALYSIS"
[1] 3
  GLTSCR1 MUTATED GLTSCR1 WILD-TYPE 
               12               477 
  GLTSCR1 MUTATED GLTSCR1 WILD-TYPE 
               12               477 
[1] "DNAJB11 MUTATION ANALYSIS"
[1] 3
  DNAJB11 MUTATED DNAJB11 WILD-TYPE 
                9               480 
  DNAJB11 MUTATED DNAJB11 WILD-TYPE 
                9               480 
[1] "LEPROTL1 MUTATION ANALYSIS"
[1] 3
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 5                484 
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 5                484 
[1] "OR9Q1 MUTATION ANALYSIS"
[1] 3
  OR9Q1 MUTATED OR9Q1 WILD-TYPE 
              6             483 
  OR9Q1 MUTATED OR9Q1 WILD-TYPE 
              6             483 
[1] "ARID4B MUTATION ANALYSIS"
[1] 3
  ARID4B MUTATED ARID4B WILD-TYPE 
              13              476 
  ARID4B MUTATED ARID4B WILD-TYPE 
              13              476 
[1] "ABHD2 MUTATION ANALYSIS"
[1] 3
  ABHD2 MUTATED ABHD2 WILD-TYPE 
             12             477 
  ABHD2 MUTATED ABHD2 WILD-TYPE 
             12             477 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 8                481 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 8                481 
[1] "MAGOHB MUTATION ANALYSIS"
[1] 3
  MAGOHB MUTATED MAGOHB WILD-TYPE 
               4              485 
  MAGOHB MUTATED MAGOHB WILD-TYPE 
               4              485 
[1] "ATL1 MUTATION ANALYSIS"
[1] 3
  ATL1 MUTATED ATL1 WILD-TYPE 
            12            477 
  ATL1 MUTATED ATL1 WILD-TYPE 
            12            477 
[1] "ACRC MUTATION ANALYSIS"
[1] 3
  ACRC MUTATED ACRC WILD-TYPE 
            15            474 
  ACRC MUTATED ACRC WILD-TYPE 
            15            474 
[1] "ZNF577 MUTATION ANALYSIS"
[1] 3
  ZNF577 MUTATED ZNF577 WILD-TYPE 
              13              476 
  ZNF577 MUTATED ZNF577 WILD-TYPE 
              13              476 
[1] "POPDC3 MUTATION ANALYSIS"
[1] 3
  POPDC3 MUTATED POPDC3 WILD-TYPE 
               8              481 
  POPDC3 MUTATED POPDC3 WILD-TYPE 
               8              481 
[1] "ESR1 MUTATION ANALYSIS"
[1] 3
  ESR1 MUTATED ESR1 WILD-TYPE 
            20            469 
  ESR1 MUTATED ESR1 WILD-TYPE 
            20            469 
[1] "SLC25A40 MUTATION ANALYSIS"
[1] 3
  SLC25A40 MUTATED SLC25A40 WILD-TYPE 
                 5                484 
  SLC25A40 MUTATED SLC25A40 WILD-TYPE 
                 5                484 
[1] "DHX32 MUTATION ANALYSIS"
[1] 3
  DHX32 MUTATED DHX32 WILD-TYPE 
             12             477 
  DHX32 MUTATED DHX32 WILD-TYPE 
             12             477 
[1] "BFSP1 MUTATION ANALYSIS"
[1] 3
  BFSP1 MUTATED BFSP1 WILD-TYPE 
              9             480 
  BFSP1 MUTATED BFSP1 WILD-TYPE 
              9             480 
[1] "CLEC1A MUTATION ANALYSIS"
[1] 3
  CLEC1A MUTATED CLEC1A WILD-TYPE 
              10              479 
  CLEC1A MUTATED CLEC1A WILD-TYPE 
              10              479 
[1] "BIRC6 MUTATION ANALYSIS"
[1] 3
  BIRC6 MUTATED BIRC6 WILD-TYPE 
             39             450 
  BIRC6 MUTATED BIRC6 WILD-TYPE 
             39             450 
[1] "MTIF2 MUTATION ANALYSIS"
[1] 3
  MTIF2 MUTATED MTIF2 WILD-TYPE 
             11             478 
  MTIF2 MUTATED MTIF2 WILD-TYPE 
             11             478 
[1] "IGDCC3 MUTATION ANALYSIS"
[1] 3
  IGDCC3 MUTATED IGDCC3 WILD-TYPE 
              12              477 
  IGDCC3 MUTATED IGDCC3 WILD-TYPE 
              12              477 
[1] "ZNF124 MUTATION ANALYSIS"
[1] 3
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               8              481 
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               8              481 
[1] "SLC38A5 MUTATION ANALYSIS"
[1] 3
  SLC38A5 MUTATED SLC38A5 WILD-TYPE 
                6               483 
  SLC38A5 MUTATED SLC38A5 WILD-TYPE 
                6               483 
[1] "C15ORF33 MUTATION ANALYSIS"
[1] 3
  C15ORF33 MUTATED C15ORF33 WILD-TYPE 
                12                477 
  C15ORF33 MUTATED C15ORF33 WILD-TYPE 
                12                477 
[1] "WEE2 MUTATION ANALYSIS"
[1] 3
  WEE2 MUTATED WEE2 WILD-TYPE 
            10            479 
  WEE2 MUTATED WEE2 WILD-TYPE 
            10            479 
[1] "MAOB MUTATION ANALYSIS"
[1] 3
  MAOB MUTATED MAOB WILD-TYPE 
             9            480 
  MAOB MUTATED MAOB WILD-TYPE 
             9            480 
[1] "REL MUTATION ANALYSIS"
[1] 3
  REL MUTATED REL WILD-TYPE 
           11           478 
  REL MUTATED REL WILD-TYPE 
           11           478 
[1] "MMP27 MUTATION ANALYSIS"
[1] 3
  MMP27 MUTATED MMP27 WILD-TYPE 
              9             480 
  MMP27 MUTATED MMP27 WILD-TYPE 
              9             480 
[1] "ZNF7 MUTATION ANALYSIS"
[1] 3
  ZNF7 MUTATED ZNF7 WILD-TYPE 
            14            475 
  ZNF7 MUTATED ZNF7 WILD-TYPE 
            14            475 
[1] "LDLRAD3 MUTATION ANALYSIS"
[1] 3
  LDLRAD3 MUTATED LDLRAD3 WILD-TYPE 
                6               483 
  LDLRAD3 MUTATED LDLRAD3 WILD-TYPE 
                6               483 
[1] "HOOK3 MUTATION ANALYSIS"
[1] 3
  HOOK3 MUTATED HOOK3 WILD-TYPE 
             11             478 
  HOOK3 MUTATED HOOK3 WILD-TYPE 
             11             478 
[1] "NAPA MUTATION ANALYSIS"
[1] 3
  NAPA MUTATED NAPA WILD-TYPE 
             7            482 
  NAPA MUTATED NAPA WILD-TYPE 
             7            482 
[1] "METT10D MUTATION ANALYSIS"
[1] 3
  METT10D MUTATED METT10D WILD-TYPE 
               11               478 
  METT10D MUTATED METT10D WILD-TYPE 
               11               478 
[1] "PLD5 MUTATION ANALYSIS"
[1] 3
  PLD5 MUTATED PLD5 WILD-TYPE 
            15            474 
  PLD5 MUTATED PLD5 WILD-TYPE 
            15            474 
[1] "SON MUTATION ANALYSIS"
[1] 3
  SON MUTATED SON WILD-TYPE 
           24           465 
  SON MUTATED SON WILD-TYPE 
           24           465 
[1] "ATP6V0A4 MUTATION ANALYSIS"
[1] 3
  ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE 
                13                476 
  ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE 
                13                476 
[1] "CACNA1D MUTATION ANALYSIS"
[1] 3
  CACNA1D MUTATED CACNA1D WILD-TYPE 
               23               466 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
               23               466 
[1] "RCOR1 MUTATION ANALYSIS"
[1] 3
  RCOR1 MUTATED RCOR1 WILD-TYPE 
              4             485 
  RCOR1 MUTATED RCOR1 WILD-TYPE 
              4             485 
[1] "ZNF286B MUTATION ANALYSIS"
[1] 3
  ZNF286B MUTATED ZNF286B WILD-TYPE 
                5               484 
  ZNF286B MUTATED ZNF286B WILD-TYPE 
                5               484 
[1] "SPATA16 MUTATION ANALYSIS"
[1] 3
  SPATA16 MUTATED SPATA16 WILD-TYPE 
               12               477 
  SPATA16 MUTATED SPATA16 WILD-TYPE 
               12               477 
[1] "OR1L1 MUTATION ANALYSIS"
[1] 3
  OR1L1 MUTATED OR1L1 WILD-TYPE 
              8             481 
  OR1L1 MUTATED OR1L1 WILD-TYPE 
              8             481 
[1] "CCDC55 MUTATION ANALYSIS"
[1] 3
  CCDC55 MUTATED CCDC55 WILD-TYPE 
              13              476 
  CCDC55 MUTATED CCDC55 WILD-TYPE 
              13              476 
[1] "AASDH MUTATION ANALYSIS"
[1] 3
  AASDH MUTATED AASDH WILD-TYPE 
             21             468 
  AASDH MUTATED AASDH WILD-TYPE 
             21             468 
[1] "CTSA MUTATION ANALYSIS"
[1] 3
  CTSA MUTATED CTSA WILD-TYPE 
             6            483 
  CTSA MUTATED CTSA WILD-TYPE 
             6            483 
[1] "ALAS1 MUTATION ANALYSIS"
[1] 3
  ALAS1 MUTATED ALAS1 WILD-TYPE 
             10             479 
  ALAS1 MUTATED ALAS1 WILD-TYPE 
             10             479 
[1] "DDX55 MUTATION ANALYSIS"
[1] 3
  DDX55 MUTATED DDX55 WILD-TYPE 
             11             478 
  DDX55 MUTATED DDX55 WILD-TYPE 
             11             478 
[1] "SFRP2 MUTATION ANALYSIS"
[1] 3
  SFRP2 MUTATED SFRP2 WILD-TYPE 
             10             479 
  SFRP2 MUTATED SFRP2 WILD-TYPE 
             10             479 
[1] "IGSF5 MUTATION ANALYSIS"
[1] 3
  IGSF5 MUTATED IGSF5 WILD-TYPE 
             15             474 
  IGSF5 MUTATED IGSF5 WILD-TYPE 
             15             474 
[1] "MFRP MUTATION ANALYSIS"
[1] 3
  MFRP MUTATED MFRP WILD-TYPE 
            12            477 
  MFRP MUTATED MFRP WILD-TYPE 
            12            477 
[1] "PIGN MUTATION ANALYSIS"
[1] 3
  PIGN MUTATED PIGN WILD-TYPE 
             9            480 
  PIGN MUTATED PIGN WILD-TYPE 
             9            480 
[1] "TPK1 MUTATION ANALYSIS"
[1] 3
  TPK1 MUTATED TPK1 WILD-TYPE 
             8            481 
  TPK1 MUTATED TPK1 WILD-TYPE 
             8            481 
[1] "IGFN1 MUTATION ANALYSIS"
[1] 3
  IGFN1 MUTATED IGFN1 WILD-TYPE 
             17             472 
  IGFN1 MUTATED IGFN1 WILD-TYPE 
             17             472 
[1] "GRK5 MUTATION ANALYSIS"
[1] 3
  GRK5 MUTATED GRK5 WILD-TYPE 
            12            477 
  GRK5 MUTATED GRK5 WILD-TYPE 
            12            477 
[1] "ZNF555 MUTATION ANALYSIS"
[1] 3
  ZNF555 MUTATED ZNF555 WILD-TYPE 
               9              480 
  ZNF555 MUTATED ZNF555 WILD-TYPE 
               9              480 
[1] "NRAP MUTATION ANALYSIS"
[1] 3
  NRAP MUTATED NRAP WILD-TYPE 
            27            462 
  NRAP MUTATED NRAP WILD-TYPE 
            27            462 
[1] "STAU1 MUTATION ANALYSIS"
[1] 3
  STAU1 MUTATED STAU1 WILD-TYPE 
             11             478 
  STAU1 MUTATED STAU1 WILD-TYPE 
             11             478 
[1] "KIAA1919 MUTATION ANALYSIS"
[1] 3
  KIAA1919 MUTATED KIAA1919 WILD-TYPE 
                 9                480 
  KIAA1919 MUTATED KIAA1919 WILD-TYPE 
                 9                480 
[1] "CTCFL MUTATION ANALYSIS"
[1] 3
  CTCFL MUTATED CTCFL WILD-TYPE 
             16             473 
  CTCFL MUTATED CTCFL WILD-TYPE 
             16             473 
[1] "LRRC31 MUTATION ANALYSIS"
[1] 3
  LRRC31 MUTATED LRRC31 WILD-TYPE 
              16              473 
  LRRC31 MUTATED LRRC31 WILD-TYPE 
              16              473 
[1] "RARG MUTATION ANALYSIS"
[1] 3
  RARG MUTATED RARG WILD-TYPE 
            10            479 
  RARG MUTATED RARG WILD-TYPE 
            10            479 
[1] "SFRS2IP MUTATION ANALYSIS"
[1] 3
  SFRS2IP MUTATED SFRS2IP WILD-TYPE 
               27               462 
  SFRS2IP MUTATED SFRS2IP WILD-TYPE 
               27               462 
[1] "TCTEX1D2 MUTATION ANALYSIS"
[1] 3
  TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE 
                 7                482 
  TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE 
                 7                482 
[1] "IKBKB MUTATION ANALYSIS"
[1] 3
  IKBKB MUTATED IKBKB WILD-TYPE 
              9             480 
  IKBKB MUTATED IKBKB WILD-TYPE 
              9             480 
[1] "PPIL5 MUTATION ANALYSIS"
[1] 3
  PPIL5 MUTATED PPIL5 WILD-TYPE 
              4             485 
  PPIL5 MUTATED PPIL5 WILD-TYPE 
              4             485 
[1] "RNF8 MUTATION ANALYSIS"
[1] 3
  RNF8 MUTATED RNF8 WILD-TYPE 
             7            482 
  RNF8 MUTATED RNF8 WILD-TYPE 
             7            482 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             24             465 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             24             465 
[1] "KIAA1407 MUTATION ANALYSIS"
[1] 3
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                13                476 
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                13                476 
[1] "LIMCH1 MUTATION ANALYSIS"
[1] 3
  LIMCH1 MUTATED LIMCH1 WILD-TYPE 
              15              474 
  LIMCH1 MUTATED LIMCH1 WILD-TYPE 
              15              474 
[1] "ATAD2 MUTATION ANALYSIS"
[1] 3
  ATAD2 MUTATED ATAD2 WILD-TYPE 
             22             467 
  ATAD2 MUTATED ATAD2 WILD-TYPE 
             22             467 
[1] "ZNF594 MUTATION ANALYSIS"
[1] 3
  ZNF594 MUTATED ZNF594 WILD-TYPE 
              16              473 
  ZNF594 MUTATED ZNF594 WILD-TYPE 
              16              473 
[1] "ACTRT1 MUTATION ANALYSIS"
[1] 3
  ACTRT1 MUTATED ACTRT1 WILD-TYPE 
              13              476 
  ACTRT1 MUTATED ACTRT1 WILD-TYPE 
              13              476 
[1] "CNTNAP3 MUTATION ANALYSIS"
[1] 3
  CNTNAP3 MUTATED CNTNAP3 WILD-TYPE 
               14               475 
  CNTNAP3 MUTATED CNTNAP3 WILD-TYPE 
               14               475 
[1] "GRIN2B MUTATION ANALYSIS"
[1] 3
  GRIN2B MUTATED GRIN2B WILD-TYPE 
              28              461 
  GRIN2B MUTATED GRIN2B WILD-TYPE 
              28              461 
[1] "CXORF23 MUTATION ANALYSIS"
[1] 3
  CXORF23 MUTATED CXORF23 WILD-TYPE 
                7               482 
  CXORF23 MUTATED CXORF23 WILD-TYPE 
                7               482 
[1] "EFCAB4B MUTATION ANALYSIS"
[1] 3
  EFCAB4B MUTATED EFCAB4B WILD-TYPE 
                7               482 
  EFCAB4B MUTATED EFCAB4B WILD-TYPE 
                7               482 
[1] "EPSTI1 MUTATION ANALYSIS"
[1] 3
  EPSTI1 MUTATED EPSTI1 WILD-TYPE 
               7              482 
  EPSTI1 MUTATED EPSTI1 WILD-TYPE 
               7              482 
[1] "GPR160 MUTATION ANALYSIS"
[1] 3
  GPR160 MUTATED GPR160 WILD-TYPE 
               5              484 
  GPR160 MUTATED GPR160 WILD-TYPE 
               5              484 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             11             478 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             11             478 
[1] "ZBTB7C MUTATION ANALYSIS"
[1] 3
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
              15              474 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
              15              474 
[1] "CHM MUTATION ANALYSIS"
[1] 3
  CHM MUTATED CHM WILD-TYPE 
            5           484 
  CHM MUTATED CHM WILD-TYPE 
            5           484 
[1] "MAPK14 MUTATION ANALYSIS"
[1] 3
  MAPK14 MUTATED MAPK14 WILD-TYPE 
               8              481 
  MAPK14 MUTATED MAPK14 WILD-TYPE 
               8              481 
[1] "C12ORF11 MUTATION ANALYSIS"
[1] 3
  C12ORF11 MUTATED C12ORF11 WILD-TYPE 
                14                475 
  C12ORF11 MUTATED C12ORF11 WILD-TYPE 
                14                475 
[1] "AOX1 MUTATION ANALYSIS"
[1] 3
  AOX1 MUTATED AOX1 WILD-TYPE 
            13            476 
  AOX1 MUTATED AOX1 WILD-TYPE 
            13            476 
[1] "SLC12A2 MUTATION ANALYSIS"
[1] 3
  SLC12A2 MUTATED SLC12A2 WILD-TYPE 
               18               471 
  SLC12A2 MUTATED SLC12A2 WILD-TYPE 
               18               471 
[1] "UGT2A1 MUTATION ANALYSIS"
[1] 3
  UGT2A1 MUTATED UGT2A1 WILD-TYPE 
              10              479 
  UGT2A1 MUTATED UGT2A1 WILD-TYPE 
              10              479 
[1] "CXCR7 MUTATION ANALYSIS"
[1] 3
  CXCR7 MUTATED CXCR7 WILD-TYPE 
             21             468 
  CXCR7 MUTATED CXCR7 WILD-TYPE 
             21             468 
[1] "SSRP1 MUTATION ANALYSIS"
[1] 3
  SSRP1 MUTATED SSRP1 WILD-TYPE 
             15             474 
  SSRP1 MUTATED SSRP1 WILD-TYPE 
             15             474 
[1] "IGFBP3 MUTATION ANALYSIS"
[1] 3
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               8              481 
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               8              481 
[1] "RELA MUTATION ANALYSIS"
[1] 3
  RELA MUTATED RELA WILD-TYPE 
            10            479 
  RELA MUTATED RELA WILD-TYPE 
            10            479 
[1] "KCNA3 MUTATION ANALYSIS"
[1] 3
  KCNA3 MUTATED KCNA3 WILD-TYPE 
             20             469 
  KCNA3 MUTATED KCNA3 WILD-TYPE 
             20             469 
[1] "CPT1B MUTATION ANALYSIS"
[1] 3
  CPT1B MUTATED CPT1B WILD-TYPE 
             11             478 
  CPT1B MUTATED CPT1B WILD-TYPE 
             11             478 
[1] "SLC14A1 MUTATION ANALYSIS"
[1] 3
  SLC14A1 MUTATED SLC14A1 WILD-TYPE 
                7               482 
  SLC14A1 MUTATED SLC14A1 WILD-TYPE 
                7               482 
[1] "PLEKHH2 MUTATION ANALYSIS"
[1] 3
  PLEKHH2 MUTATED PLEKHH2 WILD-TYPE 
               23               466 
  PLEKHH2 MUTATED PLEKHH2 WILD-TYPE 
               23               466 
[1] "ESRP2 MUTATION ANALYSIS"
[1] 3
  ESRP2 MUTATED ESRP2 WILD-TYPE 
             10             479 
  ESRP2 MUTATED ESRP2 WILD-TYPE 
             10             479 
[1] "MMP21 MUTATION ANALYSIS"
[1] 3
  MMP21 MUTATED MMP21 WILD-TYPE 
             12             477 
  MMP21 MUTATED MMP21 WILD-TYPE 
             12             477 
[1] "IL6R MUTATION ANALYSIS"
[1] 3
  IL6R MUTATED IL6R WILD-TYPE 
             8            481 
  IL6R MUTATED IL6R WILD-TYPE 
             8            481 
[1] "KSR2 MUTATION ANALYSIS"
[1] 3
  KSR2 MUTATED KSR2 WILD-TYPE 
            21            468 
  KSR2 MUTATED KSR2 WILD-TYPE 
            21            468 
[1] "ZNF443 MUTATION ANALYSIS"
[1] 3
  ZNF443 MUTATED ZNF443 WILD-TYPE 
               9              480 
  ZNF443 MUTATED ZNF443 WILD-TYPE 
               9              480 
[1] "PDSS2 MUTATION ANALYSIS"
[1] 3
  PDSS2 MUTATED PDSS2 WILD-TYPE 
              6             483 
  PDSS2 MUTATED PDSS2 WILD-TYPE 
              6             483 
[1] "ACTN1 MUTATION ANALYSIS"
[1] 3
  ACTN1 MUTATED ACTN1 WILD-TYPE 
             13             476 
  ACTN1 MUTATED ACTN1 WILD-TYPE 
             13             476 
[1] "CCPG1 MUTATION ANALYSIS"
[1] 3
  CCPG1 MUTATED CCPG1 WILD-TYPE 
             12             477 
  CCPG1 MUTATED CCPG1 WILD-TYPE 
             12             477 
[1] "PIGC MUTATION ANALYSIS"
[1] 3
  PIGC MUTATED PIGC WILD-TYPE 
             4            485 
  PIGC MUTATED PIGC WILD-TYPE 
             4            485 
[1] "CNOT3 MUTATION ANALYSIS"
[1] 3
  CNOT3 MUTATED CNOT3 WILD-TYPE 
              8             481 
  CNOT3 MUTATED CNOT3 WILD-TYPE 
              8             481 
[1] "TYW3 MUTATION ANALYSIS"
[1] 3
  TYW3 MUTATED TYW3 WILD-TYPE 
             7            482 
  TYW3 MUTATED TYW3 WILD-TYPE 
             7            482 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             27             462 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             27             462 
[1] "UBR2 MUTATION ANALYSIS"
[1] 3
  UBR2 MUTATED UBR2 WILD-TYPE 
            19            470 
  UBR2 MUTATED UBR2 WILD-TYPE 
            19            470 
[1] "GPBP1 MUTATION ANALYSIS"
[1] 3
  GPBP1 MUTATED GPBP1 WILD-TYPE 
             13             476 
  GPBP1 MUTATED GPBP1 WILD-TYPE 
             13             476 
[1] "SPAM1 MUTATION ANALYSIS"
[1] 3
  SPAM1 MUTATED SPAM1 WILD-TYPE 
             13             476 
  SPAM1 MUTATED SPAM1 WILD-TYPE 
             13             476 
[1] "ZFP91 MUTATION ANALYSIS"
[1] 3
  ZFP91 MUTATED ZFP91 WILD-TYPE 
              8             481 
  ZFP91 MUTATED ZFP91 WILD-TYPE 
              8             481 
[1] "OR13C5 MUTATION ANALYSIS"
[1] 3
  OR13C5 MUTATED OR13C5 WILD-TYPE 
              13              476 
  OR13C5 MUTATED OR13C5 WILD-TYPE 
              13              476 
[1] "SLC43A3 MUTATION ANALYSIS"
[1] 3
  SLC43A3 MUTATED SLC43A3 WILD-TYPE 
               13               476 
  SLC43A3 MUTATED SLC43A3 WILD-TYPE 
               13               476 
[1] "GOLGA1 MUTATION ANALYSIS"
[1] 3
  GOLGA1 MUTATED GOLGA1 WILD-TYPE 
               8              481 
  GOLGA1 MUTATED GOLGA1 WILD-TYPE 
               8              481 
[1] "C5ORF36 MUTATION ANALYSIS"
[1] 3
  C5ORF36 MUTATED C5ORF36 WILD-TYPE 
               20               469 
  C5ORF36 MUTATED C5ORF36 WILD-TYPE 
               20               469 
[1] "CPLX4 MUTATION ANALYSIS"
[1] 3
  CPLX4 MUTATED CPLX4 WILD-TYPE 
              5             484 
  CPLX4 MUTATED CPLX4 WILD-TYPE 
              5             484 
[1] "TEX2 MUTATION ANALYSIS"
[1] 3
  TEX2 MUTATED TEX2 WILD-TYPE 
            12            477 
  TEX2 MUTATED TEX2 WILD-TYPE 
            12            477 
[1] "ARHGAP28 MUTATION ANALYSIS"
[1] 3
  ARHGAP28 MUTATED ARHGAP28 WILD-TYPE 
                14                475 
  ARHGAP28 MUTATED ARHGAP28 WILD-TYPE 
                14                475 
[1] "STK33 MUTATION ANALYSIS"
[1] 3
  STK33 MUTATED STK33 WILD-TYPE 
             16             473 
  STK33 MUTATED STK33 WILD-TYPE 
             16             473 
[1] "GNG12 MUTATION ANALYSIS"
[1] 3
  GNG12 MUTATED GNG12 WILD-TYPE 
              8             481 
  GNG12 MUTATED GNG12 WILD-TYPE 
              8             481 
[1] "FAM70A MUTATION ANALYSIS"
[1] 3
  FAM70A MUTATED FAM70A WILD-TYPE 
               8              481 
  FAM70A MUTATED FAM70A WILD-TYPE 
               8              481 
[1] "ACPP MUTATION ANALYSIS"
[1] 3
  ACPP MUTATED ACPP WILD-TYPE 
             4            485 
  ACPP MUTATED ACPP WILD-TYPE 
             4            485 
[1] "RUNDC2A MUTATION ANALYSIS"
[1] 3
  RUNDC2A MUTATED RUNDC2A WILD-TYPE 
                7               482 
  RUNDC2A MUTATED RUNDC2A WILD-TYPE 
                7               482 
[1] "IMMT MUTATION ANALYSIS"
[1] 3
  IMMT MUTATED IMMT WILD-TYPE 
             8            481 
  IMMT MUTATED IMMT WILD-TYPE 
             8            481 
[1] "COLEC12 MUTATION ANALYSIS"
[1] 3
  COLEC12 MUTATED COLEC12 WILD-TYPE 
               19               470 
  COLEC12 MUTATED COLEC12 WILD-TYPE 
               19               470 
[1] "SCYL2 MUTATION ANALYSIS"
[1] 3
  SCYL2 MUTATED SCYL2 WILD-TYPE 
             21             468 
  SCYL2 MUTATED SCYL2 WILD-TYPE 
             21             468 
[1] "CAPRIN2 MUTATION ANALYSIS"
[1] 3
  CAPRIN2 MUTATED CAPRIN2 WILD-TYPE 
               17               472 
  CAPRIN2 MUTATED CAPRIN2 WILD-TYPE 
               17               472 
[1] "CNOT10 MUTATION ANALYSIS"
[1] 3
  CNOT10 MUTATED CNOT10 WILD-TYPE 
              10              479 
  CNOT10 MUTATED CNOT10 WILD-TYPE 
              10              479 
[1] "LUZP1 MUTATION ANALYSIS"
[1] 3
  LUZP1 MUTATED LUZP1 WILD-TYPE 
             16             473 
  LUZP1 MUTATED LUZP1 WILD-TYPE 
             16             473 
[1] "VCX3A MUTATION ANALYSIS"
[1] 3
  VCX3A MUTATED VCX3A WILD-TYPE 
              5             484 
  VCX3A MUTATED VCX3A WILD-TYPE 
              5             484 
[1] "BAP1 MUTATION ANALYSIS"
[1] 3
  BAP1 MUTATED BAP1 WILD-TYPE 
            14            475 
  BAP1 MUTATED BAP1 WILD-TYPE 
            14            475 
[1] "CDHR5 MUTATION ANALYSIS"
[1] 3
  CDHR5 MUTATED CDHR5 WILD-TYPE 
             12             477 
  CDHR5 MUTATED CDHR5 WILD-TYPE 
             12             477 
[1] "SLCO1B3 MUTATION ANALYSIS"
[1] 3
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
               19               470 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
               19               470 
[1] "TRAF3IP3 MUTATION ANALYSIS"
[1] 3
  TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE 
                13                476 
  TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE 
                13                476 
[1] "RXRA MUTATION ANALYSIS"
[1] 3
  RXRA MUTATED RXRA WILD-TYPE 
             8            481 
  RXRA MUTATED RXRA WILD-TYPE 
             8            481 
[1] "DOPEY2 MUTATION ANALYSIS"
[1] 3
  DOPEY2 MUTATED DOPEY2 WILD-TYPE 
              16              473 
  DOPEY2 MUTATED DOPEY2 WILD-TYPE 
              16              473 
[1] "LCN9 MUTATION ANALYSIS"
[1] 3
  LCN9 MUTATED LCN9 WILD-TYPE 
             4            485 
  LCN9 MUTATED LCN9 WILD-TYPE 
             4            485 
[1] "LAMB4 MUTATION ANALYSIS"
[1] 3
  LAMB4 MUTATED LAMB4 WILD-TYPE 
             30             459 
  LAMB4 MUTATED LAMB4 WILD-TYPE 
             30             459 
[1] "MED24 MUTATION ANALYSIS"
[1] 3
  MED24 MUTATED MED24 WILD-TYPE 
             11             478 
  MED24 MUTATED MED24 WILD-TYPE 
             11             478 
[1] "CUBN MUTATION ANALYSIS"
[1] 3
  CUBN MUTATED CUBN WILD-TYPE 
            58            431 
  CUBN MUTATED CUBN WILD-TYPE 
            58            431 
[1] "ACVR1C MUTATION ANALYSIS"
[1] 3
  ACVR1C MUTATED ACVR1C WILD-TYPE 
              11              478 
  ACVR1C MUTATED ACVR1C WILD-TYPE 
              11              478 
[1] "MKLN1 MUTATION ANALYSIS"
[1] 3
  MKLN1 MUTATED MKLN1 WILD-TYPE 
             11             478 
  MKLN1 MUTATED MKLN1 WILD-TYPE 
             11             478 
[1] "IFNA2 MUTATION ANALYSIS"
[1] 3
  IFNA2 MUTATED IFNA2 WILD-TYPE 
             10             479 
  IFNA2 MUTATED IFNA2 WILD-TYPE 
             10             479 
[1] "MPHOSPH9 MUTATION ANALYSIS"
[1] 3
  MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE 
                10                479 
  MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE 
                10                479 
[1] "TM7SF4 MUTATION ANALYSIS"
[1] 3
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               9              480 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               9              480 
[1] "ZNF585B MUTATION ANALYSIS"
[1] 3
  ZNF585B MUTATED ZNF585B WILD-TYPE 
                8               481 
  ZNF585B MUTATED ZNF585B WILD-TYPE 
                8               481 
[1] "ATP1A4 MUTATION ANALYSIS"
[1] 3
  ATP1A4 MUTATED ATP1A4 WILD-TYPE 
              19              470 
  ATP1A4 MUTATED ATP1A4 WILD-TYPE 
              19              470 
[1] "GUCY2F MUTATION ANALYSIS"
[1] 3
  GUCY2F MUTATED GUCY2F WILD-TYPE 
              23              466 
  GUCY2F MUTATED GUCY2F WILD-TYPE 
              23              466 
[1] "DRD3 MUTATION ANALYSIS"
[1] 3
  DRD3 MUTATED DRD3 WILD-TYPE 
             6            483 
  DRD3 MUTATED DRD3 WILD-TYPE 
             6            483 
[1] "SMG7 MUTATION ANALYSIS"
[1] 3
  SMG7 MUTATED SMG7 WILD-TYPE 
            12            477 
  SMG7 MUTATED SMG7 WILD-TYPE 
            12            477 
[1] "OR51T1 MUTATION ANALYSIS"
[1] 3
  OR51T1 MUTATED OR51T1 WILD-TYPE 
              13              476 
  OR51T1 MUTATED OR51T1 WILD-TYPE 
              13              476 
[1] "NPPB MUTATION ANALYSIS"
[1] 3
  NPPB MUTATED NPPB WILD-TYPE 
             5            484 
  NPPB MUTATED NPPB WILD-TYPE 
             5            484 
[1] "ZNF643 MUTATION ANALYSIS"
[1] 3
  ZNF643 MUTATED ZNF643 WILD-TYPE 
              10              479 
  ZNF643 MUTATED ZNF643 WILD-TYPE 
              10              479 
[1] "DUSP7 MUTATION ANALYSIS"
[1] 3
  DUSP7 MUTATED DUSP7 WILD-TYPE 
              8             481 
  DUSP7 MUTATED DUSP7 WILD-TYPE 
              8             481 
[1] "ZDHHC21 MUTATION ANALYSIS"
[1] 3
  ZDHHC21 MUTATED ZDHHC21 WILD-TYPE 
                5               484 
  ZDHHC21 MUTATED ZDHHC21 WILD-TYPE 
                5               484 
[1] "SOX6 MUTATION ANALYSIS"
[1] 3
  SOX6 MUTATED SOX6 WILD-TYPE 
            16            473 
  SOX6 MUTATED SOX6 WILD-TYPE 
            16            473 
[1] "APBA1 MUTATION ANALYSIS"
[1] 3
  APBA1 MUTATED APBA1 WILD-TYPE 
             14             475 
  APBA1 MUTATED APBA1 WILD-TYPE 
             14             475 
[1] "RREB1 MUTATION ANALYSIS"
[1] 3
  RREB1 MUTATED RREB1 WILD-TYPE 
             13             476 
  RREB1 MUTATED RREB1 WILD-TYPE 
             13             476 
[1] "KIAA0355 MUTATION ANALYSIS"
[1] 3
  KIAA0355 MUTATED KIAA0355 WILD-TYPE 
                 7                482 
  KIAA0355 MUTATED KIAA0355 WILD-TYPE 
                 7                482 
[1] "PTPN13 MUTATION ANALYSIS"
[1] 3
  PTPN13 MUTATED PTPN13 WILD-TYPE 
              25              464 
  PTPN13 MUTATED PTPN13 WILD-TYPE 
              25              464 
[1] "TNKS2 MUTATION ANALYSIS"
[1] 3
  TNKS2 MUTATED TNKS2 WILD-TYPE 
             22             467 
  TNKS2 MUTATED TNKS2 WILD-TYPE 
             22             467 
[1] "XPO4 MUTATION ANALYSIS"
[1] 3
  XPO4 MUTATED XPO4 WILD-TYPE 
            20            469 
  XPO4 MUTATED XPO4 WILD-TYPE 
            20            469 
[1] "AKNA MUTATION ANALYSIS"
[1] 3
  AKNA MUTATED AKNA WILD-TYPE 
            12            477 
  AKNA MUTATED AKNA WILD-TYPE 
            12            477 
[1] "TRIM36 MUTATION ANALYSIS"
[1] 3
  TRIM36 MUTATED TRIM36 WILD-TYPE 
              15              474 
  TRIM36 MUTATED TRIM36 WILD-TYPE 
              15              474 
[1] "DIAPH3 MUTATION ANALYSIS"
[1] 3
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
              18              471 
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
              18              471 
[1] "KDR MUTATION ANALYSIS"
[1] 3
  KDR MUTATED KDR WILD-TYPE 
           32           457 
  KDR MUTATED KDR WILD-TYPE 
           32           457 
[1] "STK40 MUTATION ANALYSIS"
[1] 3
  STK40 MUTATED STK40 WILD-TYPE 
              9             480 
  STK40 MUTATED STK40 WILD-TYPE 
              9             480 
[1] "XRCC6 MUTATION ANALYSIS"
[1] 3
  XRCC6 MUTATED XRCC6 WILD-TYPE 
              8             481 
  XRCC6 MUTATED XRCC6 WILD-TYPE 
              8             481 
[1] "PHLDB2 MUTATION ANALYSIS"
[1] 3
  PHLDB2 MUTATED PHLDB2 WILD-TYPE 
              20              469 
  PHLDB2 MUTATED PHLDB2 WILD-TYPE 
              20              469 
[1] "MRPL44 MUTATION ANALYSIS"
[1] 3
  MRPL44 MUTATED MRPL44 WILD-TYPE 
              10              479 
  MRPL44 MUTATED MRPL44 WILD-TYPE 
              10              479 
[1] "IDI1 MUTATION ANALYSIS"
[1] 3
  IDI1 MUTATED IDI1 WILD-TYPE 
             4            485 
  IDI1 MUTATED IDI1 WILD-TYPE 
             4            485 
[1] "SMOX MUTATION ANALYSIS"
[1] 3
  SMOX MUTATED SMOX WILD-TYPE 
             8            481 
  SMOX MUTATED SMOX WILD-TYPE 
             8            481 
[1] "CENPJ MUTATION ANALYSIS"
[1] 3
  CENPJ MUTATED CENPJ WILD-TYPE 
             22             467 
  CENPJ MUTATED CENPJ WILD-TYPE 
             22             467 
[1] "DUSP16 MUTATION ANALYSIS"
[1] 3
  DUSP16 MUTATED DUSP16 WILD-TYPE 
              11              478 
  DUSP16 MUTATED DUSP16 WILD-TYPE 
              11              478 
[1] "ZHX3 MUTATION ANALYSIS"
[1] 3
  ZHX3 MUTATED ZHX3 WILD-TYPE 
            14            475 
  ZHX3 MUTATED ZHX3 WILD-TYPE 
            14            475 
[1] "PDK1 MUTATION ANALYSIS"
[1] 3
  PDK1 MUTATED PDK1 WILD-TYPE 
             7            482 
  PDK1 MUTATED PDK1 WILD-TYPE 
             7            482 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             39             450 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             39             450 
[1] "SPAST MUTATION ANALYSIS"
[1] 3
  SPAST MUTATED SPAST WILD-TYPE 
             10             479 
  SPAST MUTATED SPAST WILD-TYPE 
             10             479 
[1] "SIN3A MUTATION ANALYSIS"
[1] 3
  SIN3A MUTATED SIN3A WILD-TYPE 
             20             469 
  SIN3A MUTATED SIN3A WILD-TYPE 
             20             469 
[1] "C1ORF88 MUTATION ANALYSIS"
[1] 3
  C1ORF88 MUTATED C1ORF88 WILD-TYPE 
                6               483 
  C1ORF88 MUTATED C1ORF88 WILD-TYPE 
                6               483 
[1] "GLB1L2 MUTATION ANALYSIS"
[1] 3
  GLB1L2 MUTATED GLB1L2 WILD-TYPE 
              14              475 
  GLB1L2 MUTATED GLB1L2 WILD-TYPE 
              14              475 
[1] "OSBPL1A MUTATION ANALYSIS"
[1] 3
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
               11               478 
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
               11               478 
[1] "AFM MUTATION ANALYSIS"
[1] 3
  AFM MUTATED AFM WILD-TYPE 
           17           472 
  AFM MUTATED AFM WILD-TYPE 
           17           472 
[1] "YIPF1 MUTATION ANALYSIS"
[1] 3
  YIPF1 MUTATED YIPF1 WILD-TYPE 
              6             483 
  YIPF1 MUTATED YIPF1 WILD-TYPE 
              6             483 
[1] "TSPAN7 MUTATION ANALYSIS"
[1] 3
  TSPAN7 MUTATED TSPAN7 WILD-TYPE 
               9              480 
  TSPAN7 MUTATED TSPAN7 WILD-TYPE 
               9              480 
[1] "MLLT10 MUTATION ANALYSIS"
[1] 3
  MLLT10 MUTATED MLLT10 WILD-TYPE 
              11              478 
  MLLT10 MUTATED MLLT10 WILD-TYPE 
              11              478 
[1] "CCDC6 MUTATION ANALYSIS"
[1] 3
  CCDC6 MUTATED CCDC6 WILD-TYPE 
             11             478 
  CCDC6 MUTATED CCDC6 WILD-TYPE 
             11             478 
[1] "SGOL2 MUTATION ANALYSIS"
[1] 3
  SGOL2 MUTATED SGOL2 WILD-TYPE 
             16             473 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
             16             473 
[1] "HECW1 MUTATION ANALYSIS"
[1] 3
  HECW1 MUTATED HECW1 WILD-TYPE 
             39             450 
  HECW1 MUTATED HECW1 WILD-TYPE 
             39             450 
[1] "C14ORF180 MUTATION ANALYSIS"
[1] 3
  C14ORF180 MUTATED C14ORF180 WILD-TYPE 
                  4                 485 
  C14ORF180 MUTATED C14ORF180 WILD-TYPE 
                  4                 485 
[1] "USP14 MUTATION ANALYSIS"
[1] 3
  USP14 MUTATED USP14 WILD-TYPE 
              7             482 
  USP14 MUTATED USP14 WILD-TYPE 
              7             482 
[1] "TMEM144 MUTATION ANALYSIS"
[1] 3
  TMEM144 MUTATED TMEM144 WILD-TYPE 
                8               481 
  TMEM144 MUTATED TMEM144 WILD-TYPE 
                8               481 
[1] "PIAS2 MUTATION ANALYSIS"
[1] 3
  PIAS2 MUTATED PIAS2 WILD-TYPE 
              5             484 
  PIAS2 MUTATED PIAS2 WILD-TYPE 
              5             484 
[1] "HIST4H4 MUTATION ANALYSIS"
[1] 3
  HIST4H4 MUTATED HIST4H4 WILD-TYPE 
                3               486 
  HIST4H4 MUTATED HIST4H4 WILD-TYPE 
                3               486 
[1] "ASTE1 MUTATION ANALYSIS"
[1] 3
  ASTE1 MUTATED ASTE1 WILD-TYPE 
             10             479 
  ASTE1 MUTATED ASTE1 WILD-TYPE 
             10             479 
[1] "FBXO38 MUTATION ANALYSIS"
[1] 3
  FBXO38 MUTATED FBXO38 WILD-TYPE 
              18              471 
  FBXO38 MUTATED FBXO38 WILD-TYPE 
              18              471 
[1] "HAP1 MUTATION ANALYSIS"
[1] 3
  HAP1 MUTATED HAP1 WILD-TYPE 
             8            481 
  HAP1 MUTATED HAP1 WILD-TYPE 
             8            481 
[1] "TRAF3IP1 MUTATION ANALYSIS"
[1] 3
  TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE 
                 7                482 
  TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE 
                 7                482 
[1] "ZNF318 MUTATION ANALYSIS"
[1] 3
  ZNF318 MUTATED ZNF318 WILD-TYPE 
              30              459 
  ZNF318 MUTATED ZNF318 WILD-TYPE 
              30              459 
[1] "NUP133 MUTATION ANALYSIS"
[1] 3
  NUP133 MUTATED NUP133 WILD-TYPE 
              19              470 
  NUP133 MUTATED NUP133 WILD-TYPE 
              19              470 
[1] "ARAF MUTATION ANALYSIS"
[1] 3
  ARAF MUTATED ARAF WILD-TYPE 
            10            479 
  ARAF MUTATED ARAF WILD-TYPE 
            10            479 
[1] "MXRA5 MUTATION ANALYSIS"
[1] 3
  MXRA5 MUTATED MXRA5 WILD-TYPE 
             46             443 
  MXRA5 MUTATED MXRA5 WILD-TYPE 
             46             443 
[1] "PAX2 MUTATION ANALYSIS"
[1] 3
  PAX2 MUTATED PAX2 WILD-TYPE 
             7            482 
  PAX2 MUTATED PAX2 WILD-TYPE 
             7            482 
[1] "FZD3 MUTATION ANALYSIS"
[1] 3
  FZD3 MUTATED FZD3 WILD-TYPE 
            14            475 
  FZD3 MUTATED FZD3 WILD-TYPE 
            14            475 
[1] "LRRFIP2 MUTATION ANALYSIS"
[1] 3
  LRRFIP2 MUTATED LRRFIP2 WILD-TYPE 
               16               473 
  LRRFIP2 MUTATED LRRFIP2 WILD-TYPE 
               16               473 
[1] "SEZ6L MUTATION ANALYSIS"
[1] 3
  SEZ6L MUTATED SEZ6L WILD-TYPE 
             20             469 
  SEZ6L MUTATED SEZ6L WILD-TYPE 
             20             469 
[1] "ENTHD1 MUTATION ANALYSIS"
[1] 3
  ENTHD1 MUTATED ENTHD1 WILD-TYPE 
              11              478 
  ENTHD1 MUTATED ENTHD1 WILD-TYPE 
              11              478 
[1] "NEDD9 MUTATION ANALYSIS"
[1] 3
  NEDD9 MUTATED NEDD9 WILD-TYPE 
             13             476 
  NEDD9 MUTATED NEDD9 WILD-TYPE 
             13             476 
[1] "GDF6 MUTATION ANALYSIS"
[1] 3
  GDF6 MUTATED GDF6 WILD-TYPE 
             7            482 
  GDF6 MUTATED GDF6 WILD-TYPE 
             7            482 
[1] "ZNF259 MUTATION ANALYSIS"
[1] 3
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               3              486 
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               3              486 
[1] "SRL MUTATION ANALYSIS"
[1] 3
  SRL MUTATED SRL WILD-TYPE 
           12           477 
  SRL MUTATED SRL WILD-TYPE 
           12           477 
[1] "G3BP1 MUTATION ANALYSIS"
[1] 3
  G3BP1 MUTATED G3BP1 WILD-TYPE 
             12             477 
  G3BP1 MUTATED G3BP1 WILD-TYPE 
             12             477 
[1] "CYP4F11 MUTATION ANALYSIS"
[1] 3
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                7               482 
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                7               482 
[1] "UBE3C MUTATION ANALYSIS"
[1] 3
  UBE3C MUTATED UBE3C WILD-TYPE 
             19             470 
  UBE3C MUTATED UBE3C WILD-TYPE 
             19             470 
[1] "LIPH MUTATION ANALYSIS"
[1] 3
  LIPH MUTATED LIPH WILD-TYPE 
            10            479 
  LIPH MUTATED LIPH WILD-TYPE 
            10            479 
[1] "GLT8D1 MUTATION ANALYSIS"
[1] 3
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               9              480 
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               9              480 
[1] "C20ORF43 MUTATION ANALYSIS"
[1] 3
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 4                485 
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 4                485 
[1] "GOLIM4 MUTATION ANALYSIS"
[1] 3
  GOLIM4 MUTATED GOLIM4 WILD-TYPE 
              11              478 
  GOLIM4 MUTATED GOLIM4 WILD-TYPE 
              11              478 
[1] "MTMR1 MUTATION ANALYSIS"
[1] 3
  MTMR1 MUTATED MTMR1 WILD-TYPE 
             13             476 
  MTMR1 MUTATED MTMR1 WILD-TYPE 
             13             476 
[1] "TRPM6 MUTATION ANALYSIS"
[1] 3
  TRPM6 MUTATED TRPM6 WILD-TYPE 
             30             459 
  TRPM6 MUTATED TRPM6 WILD-TYPE 
             30             459 
[1] "GABRA4 MUTATION ANALYSIS"
[1] 3
  GABRA4 MUTATED GABRA4 WILD-TYPE 
              13              476 
  GABRA4 MUTATED GABRA4 WILD-TYPE 
              13              476 
[1] "C17ORF71 MUTATION ANALYSIS"
[1] 3
  C17ORF71 MUTATED C17ORF71 WILD-TYPE 
                11                478 
  C17ORF71 MUTATED C17ORF71 WILD-TYPE 
                11                478 
[1] "VCAN MUTATION ANALYSIS"
[1] 3
  VCAN MUTATED VCAN WILD-TYPE 
            43            446 
  VCAN MUTATED VCAN WILD-TYPE 
            43            446 
[1] "CDH24 MUTATION ANALYSIS"
[1] 3
  CDH24 MUTATED CDH24 WILD-TYPE 
             12             477 
  CDH24 MUTATED CDH24 WILD-TYPE 
             12             477 
[1] "SMARCA1 MUTATION ANALYSIS"
[1] 3
  SMARCA1 MUTATED SMARCA1 WILD-TYPE 
               26               463 
  SMARCA1 MUTATED SMARCA1 WILD-TYPE 
               26               463 
[1] "MORC1 MUTATION ANALYSIS"
[1] 3
  MORC1 MUTATED MORC1 WILD-TYPE 
             18             471 
  MORC1 MUTATED MORC1 WILD-TYPE 
             18             471 
[1] "ABL1 MUTATION ANALYSIS"
[1] 3
  ABL1 MUTATED ABL1 WILD-TYPE 
            30            459 
  ABL1 MUTATED ABL1 WILD-TYPE 
            30            459 
[1] "TTC13 MUTATION ANALYSIS"
[1] 3
  TTC13 MUTATED TTC13 WILD-TYPE 
             10             479 
  TTC13 MUTATED TTC13 WILD-TYPE 
             10             479 
[1] "PTPMT1 MUTATION ANALYSIS"
[1] 3
  PTPMT1 MUTATED PTPMT1 WILD-TYPE 
               7              482 
  PTPMT1 MUTATED PTPMT1 WILD-TYPE 
               7              482 
[1] "HEXIM2 MUTATION ANALYSIS"
[1] 3
  HEXIM2 MUTATED HEXIM2 WILD-TYPE 
               7              482 
  HEXIM2 MUTATED HEXIM2 WILD-TYPE 
               7              482 
[1] "ST14 MUTATION ANALYSIS"
[1] 3
  ST14 MUTATED ST14 WILD-TYPE 
            12            477 
  ST14 MUTATED ST14 WILD-TYPE 
            12            477 
[1] "DPPA2 MUTATION ANALYSIS"
[1] 3
  DPPA2 MUTATED DPPA2 WILD-TYPE 
              8             481 
  DPPA2 MUTATED DPPA2 WILD-TYPE 
              8             481 
[1] "MUC2 MUTATION ANALYSIS"
[1] 3
  MUC2 MUTATED MUC2 WILD-TYPE 
            25            464 
  MUC2 MUTATED MUC2 WILD-TYPE 
            25            464 
[1] "CTTN MUTATION ANALYSIS"
[1] 3
  CTTN MUTATED CTTN WILD-TYPE 
             5            484 
  CTTN MUTATED CTTN WILD-TYPE 
             5            484 
[1] "NFIB MUTATION ANALYSIS"
[1] 3
  NFIB MUTATED NFIB WILD-TYPE 
            14            475 
  NFIB MUTATED NFIB WILD-TYPE 
            14            475 
[1] "IFNA1 MUTATION ANALYSIS"
[1] 3
  IFNA1 MUTATED IFNA1 WILD-TYPE 
              7             482 
  IFNA1 MUTATED IFNA1 WILD-TYPE 
              7             482 
[1] "RGS3 MUTATION ANALYSIS"
[1] 3
  RGS3 MUTATED RGS3 WILD-TYPE 
            18            471 
  RGS3 MUTATED RGS3 WILD-TYPE 
            18            471 
[1] "CCDC89 MUTATION ANALYSIS"
[1] 3
  CCDC89 MUTATED CCDC89 WILD-TYPE 
               4              485 
  CCDC89 MUTATED CCDC89 WILD-TYPE 
               4              485 
[1] "MIA2 MUTATION ANALYSIS"
[1] 3
  MIA2 MUTATED MIA2 WILD-TYPE 
            12            477 
  MIA2 MUTATED MIA2 WILD-TYPE 
            12            477 
[1] "DDR2 MUTATION ANALYSIS"
[1] 3
  DDR2 MUTATED DDR2 WILD-TYPE 
            15            474 
  DDR2 MUTATED DDR2 WILD-TYPE 
            15            474 
[1] "IL3 MUTATION ANALYSIS"
[1] 3
  IL3 MUTATED IL3 WILD-TYPE 
            6           483 
  IL3 MUTATED IL3 WILD-TYPE 
            6           483 
[1] "NCF2 MUTATION ANALYSIS"
[1] 3
  NCF2 MUTATED NCF2 WILD-TYPE 
            10            479 
  NCF2 MUTATED NCF2 WILD-TYPE 
            10            479 
[1] "DCLRE1A MUTATION ANALYSIS"
[1] 3
  DCLRE1A MUTATED DCLRE1A WILD-TYPE 
               13               476 
  DCLRE1A MUTATED DCLRE1A WILD-TYPE 
               13               476 
[1] "ORC4L MUTATION ANALYSIS"
[1] 3
  ORC4L MUTATED ORC4L WILD-TYPE 
              7             482 
  ORC4L MUTATED ORC4L WILD-TYPE 
              7             482 
[1] "LRRN1 MUTATION ANALYSIS"
[1] 3
  LRRN1 MUTATED LRRN1 WILD-TYPE 
             19             470 
  LRRN1 MUTATED LRRN1 WILD-TYPE 
             19             470 
[1] "KIAA1267 MUTATION ANALYSIS"
[1] 3
  KIAA1267 MUTATED KIAA1267 WILD-TYPE 
                19                470 
  KIAA1267 MUTATED KIAA1267 WILD-TYPE 
                19                470 
[1] "RPS6KA6 MUTATION ANALYSIS"
[1] 3
  RPS6KA6 MUTATED RPS6KA6 WILD-TYPE 
               18               471 
  RPS6KA6 MUTATED RPS6KA6 WILD-TYPE 
               18               471 
[1] "GPRIN3 MUTATION ANALYSIS"
[1] 3
  GPRIN3 MUTATED GPRIN3 WILD-TYPE 
              10              479 
  GPRIN3 MUTATED GPRIN3 WILD-TYPE 
              10              479 
[1] "DHDDS MUTATION ANALYSIS"
[1] 3
  DHDDS MUTATED DHDDS WILD-TYPE 
              6             483 
  DHDDS MUTATED DHDDS WILD-TYPE 
              6             483 
[1] "ARL11 MUTATION ANALYSIS"
[1] 3
  ARL11 MUTATED ARL11 WILD-TYPE 
              7             482 
  ARL11 MUTATED ARL11 WILD-TYPE 
              7             482 
[1] "ATP2A2 MUTATION ANALYSIS"
[1] 3
  ATP2A2 MUTATED ATP2A2 WILD-TYPE 
              16              473 
  ATP2A2 MUTATED ATP2A2 WILD-TYPE 
              16              473 
[1] "HSF5 MUTATION ANALYSIS"
[1] 3
  HSF5 MUTATED HSF5 WILD-TYPE 
             8            481 
  HSF5 MUTATED HSF5 WILD-TYPE 
             8            481 
[1] "ACCN5 MUTATION ANALYSIS"
[1] 3
  ACCN5 MUTATED ACCN5 WILD-TYPE 
             14             475 
  ACCN5 MUTATED ACCN5 WILD-TYPE 
             14             475 
[1] "LRRTM2 MUTATION ANALYSIS"
[1] 3
  LRRTM2 MUTATED LRRTM2 WILD-TYPE 
               9              480 
  LRRTM2 MUTATED LRRTM2 WILD-TYPE 
               9              480 
[1] "ATR MUTATION ANALYSIS"
[1] 3
  ATR MUTATED ATR WILD-TYPE 
           33           456 
  ATR MUTATED ATR WILD-TYPE 
           33           456 
[1] "FBLIM1 MUTATION ANALYSIS"
[1] 3
  FBLIM1 MUTATED FBLIM1 WILD-TYPE 
               6              483 
  FBLIM1 MUTATED FBLIM1 WILD-TYPE 
               6              483 
[1] "CCDC14 MUTATION ANALYSIS"
[1] 3
  CCDC14 MUTATED CCDC14 WILD-TYPE 
              11              478 
  CCDC14 MUTATED CCDC14 WILD-TYPE 
              11              478 
[1] "SKAP2 MUTATION ANALYSIS"
[1] 3
  SKAP2 MUTATED SKAP2 WILD-TYPE 
              5             484 
  SKAP2 MUTATED SKAP2 WILD-TYPE 
              5             484 
[1] "MYO1D MUTATION ANALYSIS"
[1] 3
  MYO1D MUTATED MYO1D WILD-TYPE 
             11             478 
  MYO1D MUTATED MYO1D WILD-TYPE 
             11             478 
[1] "ZNF608 MUTATION ANALYSIS"
[1] 3
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              13              476 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              13              476 
[1] "IDE MUTATION ANALYSIS"
[1] 3
  IDE MUTATED IDE WILD-TYPE 
           13           476 
  IDE MUTATED IDE WILD-TYPE 
           13           476 
[1] "BEX5 MUTATION ANALYSIS"
[1] 3
  BEX5 MUTATED BEX5 WILD-TYPE 
             7            482 
  BEX5 MUTATED BEX5 WILD-TYPE 
             7            482 
[1] "AGBL5 MUTATION ANALYSIS"
[1] 3
  AGBL5 MUTATED AGBL5 WILD-TYPE 
             13             476 
  AGBL5 MUTATED AGBL5 WILD-TYPE 
             13             476 
[1] "LDLR MUTATION ANALYSIS"
[1] 3
  LDLR MUTATED LDLR WILD-TYPE 
            12            477 
  LDLR MUTATED LDLR WILD-TYPE 
            12            477 
[1] "NUF2 MUTATION ANALYSIS"
[1] 3
  NUF2 MUTATED NUF2 WILD-TYPE 
            16            473 
  NUF2 MUTATED NUF2 WILD-TYPE 
            16            473 
[1] "ZNF521 MUTATION ANALYSIS"
[1] 3
  ZNF521 MUTATED ZNF521 WILD-TYPE 
              34              455 
  ZNF521 MUTATED ZNF521 WILD-TYPE 
              34              455 
[1] "OR4N2 MUTATION ANALYSIS"
[1] 3
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             10             479 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
             10             479 
[1] "CELSR1 MUTATION ANALYSIS"
[1] 3
  CELSR1 MUTATED CELSR1 WILD-TYPE 
              23              466 
  CELSR1 MUTATED CELSR1 WILD-TYPE 
              23              466 
[1] "SDAD1 MUTATION ANALYSIS"
[1] 3
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              8             481 
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              8             481 
[1] "GTDC1 MUTATION ANALYSIS"
[1] 3
  GTDC1 MUTATED GTDC1 WILD-TYPE 
             10             479 
  GTDC1 MUTATED GTDC1 WILD-TYPE 
             10             479 
[1] "PLCG1 MUTATION ANALYSIS"
[1] 3
  PLCG1 MUTATED PLCG1 WILD-TYPE 
             19             470 
  PLCG1 MUTATED PLCG1 WILD-TYPE 
             19             470 
[1] "SMC4 MUTATION ANALYSIS"
[1] 3
  SMC4 MUTATED SMC4 WILD-TYPE 
            20            469 
  SMC4 MUTATED SMC4 WILD-TYPE 
            20            469 
[1] "NDUFV2 MUTATION ANALYSIS"
[1] 3
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               3              486 
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               3              486 
[1] "SYT2 MUTATION ANALYSIS"
[1] 3
  SYT2 MUTATED SYT2 WILD-TYPE 
             9            480 
  SYT2 MUTATED SYT2 WILD-TYPE 
             9            480 
[1] "KIT MUTATION ANALYSIS"
[1] 3
  KIT MUTATED KIT WILD-TYPE 
          112           377 
  KIT MUTATED KIT WILD-TYPE 
          112           377 
[1] "ERMP1 MUTATION ANALYSIS"
[1] 3
  ERMP1 MUTATED ERMP1 WILD-TYPE 
             11             478 
  ERMP1 MUTATED ERMP1 WILD-TYPE 
             11             478 
[1] "NOV MUTATION ANALYSIS"
[1] 3
  NOV MUTATED NOV WILD-TYPE 
           10           479 
  NOV MUTATED NOV WILD-TYPE 
           10           479 
[1] "MYOG MUTATION ANALYSIS"
[1] 3
  MYOG MUTATED MYOG WILD-TYPE 
             6            483 
  MYOG MUTATED MYOG WILD-TYPE 
             6            483 
[1] "NTN4 MUTATION ANALYSIS"
[1] 3
  NTN4 MUTATED NTN4 WILD-TYPE 
             9            480 
  NTN4 MUTATED NTN4 WILD-TYPE 
             9            480 
[1] "XRN1 MUTATION ANALYSIS"
[1] 3
  XRN1 MUTATED XRN1 WILD-TYPE 
            24            465 
  XRN1 MUTATED XRN1 WILD-TYPE 
            24            465 
[1] "FAM175A MUTATION ANALYSIS"
[1] 3
  FAM175A MUTATED FAM175A WILD-TYPE 
                8               481 
  FAM175A MUTATED FAM175A WILD-TYPE 
                8               481 
[1] "CSF3R MUTATION ANALYSIS"
[1] 3
  CSF3R MUTATED CSF3R WILD-TYPE 
             15             474 
  CSF3R MUTATED CSF3R WILD-TYPE 
             15             474 
[1] "RAB22A MUTATION ANALYSIS"
[1] 3
  RAB22A MUTATED RAB22A WILD-TYPE 
               3              486 
  RAB22A MUTATED RAB22A WILD-TYPE 
               3              486 
[1] "SAMD4A MUTATION ANALYSIS"
[1] 3
  SAMD4A MUTATED SAMD4A WILD-TYPE 
              11              478 
  SAMD4A MUTATED SAMD4A WILD-TYPE 
              11              478 
[1] "CCDC11 MUTATION ANALYSIS"
[1] 3
  CCDC11 MUTATED CCDC11 WILD-TYPE 
              10              479 
  CCDC11 MUTATED CCDC11 WILD-TYPE 
              10              479 
[1] "TRPM2 MUTATION ANALYSIS"
[1] 3
  TRPM2 MUTATED TRPM2 WILD-TYPE 
             26             463 
  TRPM2 MUTATED TRPM2 WILD-TYPE 
             26             463 
[1] "TRIP12 MUTATION ANALYSIS"
[1] 3
  TRIP12 MUTATED TRIP12 WILD-TYPE 
              31              458 
  TRIP12 MUTATED TRIP12 WILD-TYPE 
              31              458 
[1] "BBS2 MUTATION ANALYSIS"
[1] 3
  BBS2 MUTATED BBS2 WILD-TYPE 
            14            475 
  BBS2 MUTATED BBS2 WILD-TYPE 
            14            475 
[1] "PDGFC MUTATION ANALYSIS"
[1] 3
  PDGFC MUTATED PDGFC WILD-TYPE 
             10             479 
  PDGFC MUTATED PDGFC WILD-TYPE 
             10             479 
[1] "KIF13A MUTATION ANALYSIS"
[1] 3
  KIF13A MUTATED KIF13A WILD-TYPE 
              22              467 
  KIF13A MUTATED KIF13A WILD-TYPE 
              22              467 
[1] "KNTC1 MUTATION ANALYSIS"
[1] 3
  KNTC1 MUTATED KNTC1 WILD-TYPE 
             25             464 
  KNTC1 MUTATED KNTC1 WILD-TYPE 
             25             464 
[1] "TRIM45 MUTATION ANALYSIS"
[1] 3
  TRIM45 MUTATED TRIM45 WILD-TYPE 
              14              475 
  TRIM45 MUTATED TRIM45 WILD-TYPE 
              14              475 
[1] "UEVLD MUTATION ANALYSIS"
[1] 3
  UEVLD MUTATED UEVLD WILD-TYPE 
              4             485 
  UEVLD MUTATED UEVLD WILD-TYPE 
              4             485 
[1] "PEX2 MUTATION ANALYSIS"
[1] 3
  PEX2 MUTATED PEX2 WILD-TYPE 
            10            479 
  PEX2 MUTATED PEX2 WILD-TYPE 
            10            479 
[1] "C16ORF71 MUTATION ANALYSIS"
[1] 3
  C16ORF71 MUTATED C16ORF71 WILD-TYPE 
                 7                482 
  C16ORF71 MUTATED C16ORF71 WILD-TYPE 
                 7                482 
[1] "SLC6A3 MUTATION ANALYSIS"
[1] 3
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               8              481 
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               8              481 
[1] "MLNR MUTATION ANALYSIS"
[1] 3
  MLNR MUTATED MLNR WILD-TYPE 
             4            485 
  MLNR MUTATED MLNR WILD-TYPE 
             4            485 
[1] "GSK3B MUTATION ANALYSIS"
[1] 3
  GSK3B MUTATED GSK3B WILD-TYPE 
             15             474 
  GSK3B MUTATED GSK3B WILD-TYPE 
             15             474 
[1] "ZNF462 MUTATION ANALYSIS"
[1] 3
  ZNF462 MUTATED ZNF462 WILD-TYPE 
              28              461 
  ZNF462 MUTATED ZNF462 WILD-TYPE 
              28              461 
[1] "HOXD9 MUTATION ANALYSIS"
[1] 3
  HOXD9 MUTATED HOXD9 WILD-TYPE 
              5             484 
  HOXD9 MUTATED HOXD9 WILD-TYPE 
              5             484 
[1] "MGEA5 MUTATION ANALYSIS"
[1] 3
  MGEA5 MUTATED MGEA5 WILD-TYPE 
              8             481 
  MGEA5 MUTATED MGEA5 WILD-TYPE 
              8             481 
[1] "C7ORF33 MUTATION ANALYSIS"
[1] 3
  C7ORF33 MUTATED C7ORF33 WILD-TYPE 
                6               483 
  C7ORF33 MUTATED C7ORF33 WILD-TYPE 
                6               483 
[1] "ATP2C2 MUTATION ANALYSIS"
[1] 3
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
              11              478 
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
              11              478 
[1] "DCAF8L1 MUTATION ANALYSIS"
[1] 3
  DCAF8L1 MUTATED DCAF8L1 WILD-TYPE 
               18               471 
  DCAF8L1 MUTATED DCAF8L1 WILD-TYPE 
               18               471 
[1] "CENPA MUTATION ANALYSIS"
[1] 3
  CENPA MUTATED CENPA WILD-TYPE 
              5             484 
  CENPA MUTATED CENPA WILD-TYPE 
              5             484 
[1] "MST1R MUTATION ANALYSIS"
[1] 3
  MST1R MUTATED MST1R WILD-TYPE 
             14             475 
  MST1R MUTATED MST1R WILD-TYPE 
             14             475 
[1] "NONO MUTATION ANALYSIS"
[1] 3
  NONO MUTATED NONO WILD-TYPE 
            12            477 
  NONO MUTATED NONO WILD-TYPE 
            12            477 
[1] "CYP2C9 MUTATION ANALYSIS"
[1] 3
  CYP2C9 MUTATED CYP2C9 WILD-TYPE 
               9              480 
  CYP2C9 MUTATED CYP2C9 WILD-TYPE 
               9              480 
[1] "ADAM33 MUTATION ANALYSIS"
[1] 3
  ADAM33 MUTATED ADAM33 WILD-TYPE 
               7              482 
  ADAM33 MUTATED ADAM33 WILD-TYPE 
               7              482 
[1] "DYRK4 MUTATION ANALYSIS"
[1] 3
  DYRK4 MUTATED DYRK4 WILD-TYPE 
             14             475 
  DYRK4 MUTATED DYRK4 WILD-TYPE 
             14             475 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             11             478 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             11             478 
[1] "NLRP8 MUTATION ANALYSIS"
[1] 3
  NLRP8 MUTATED NLRP8 WILD-TYPE 
             28             461 
  NLRP8 MUTATED NLRP8 WILD-TYPE 
             28             461 
[1] "RALGAPB MUTATION ANALYSIS"
[1] 3
  RALGAPB MUTATED RALGAPB WILD-TYPE 
               15               474 
  RALGAPB MUTATED RALGAPB WILD-TYPE 
               15               474 
[1] "DCLRE1C MUTATION ANALYSIS"
[1] 3
  DCLRE1C MUTATED DCLRE1C WILD-TYPE 
               12               477 
  DCLRE1C MUTATED DCLRE1C WILD-TYPE 
               12               477 
[1] "SLC9A9 MUTATION ANALYSIS"
[1] 3
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
              23              466 
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
              23              466 
[1] "C17ORF58 MUTATION ANALYSIS"
[1] 3
  C17ORF58 MUTATED C17ORF58 WILD-TYPE 
                 3                486 
  C17ORF58 MUTATED C17ORF58 WILD-TYPE 
                 3                486 
[1] "GORASP1 MUTATION ANALYSIS"
[1] 3
  GORASP1 MUTATED GORASP1 WILD-TYPE 
               11               478 
  GORASP1 MUTATED GORASP1 WILD-TYPE 
               11               478 
[1] "RAD18 MUTATION ANALYSIS"
[1] 3
  RAD18 MUTATED RAD18 WILD-TYPE 
             15             474 
  RAD18 MUTATED RAD18 WILD-TYPE 
             15             474 
[1] "ZCWPW2 MUTATION ANALYSIS"
[1] 3
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
              14              475 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
              14              475 
[1] "OR5H1 MUTATION ANALYSIS"
[1] 3
  OR5H1 MUTATED OR5H1 WILD-TYPE 
             10             479 
  OR5H1 MUTATED OR5H1 WILD-TYPE 
             10             479 
[1] "MDM2 MUTATION ANALYSIS"
[1] 3
  MDM2 MUTATED MDM2 WILD-TYPE 
             9            480 
  MDM2 MUTATED MDM2 WILD-TYPE 
             9            480 
[1] "ROR1 MUTATION ANALYSIS"
[1] 3
  ROR1 MUTATED ROR1 WILD-TYPE 
            23            466 
  ROR1 MUTATED ROR1 WILD-TYPE 
            23            466 
[1] "BATF MUTATION ANALYSIS"
[1] 3
  BATF MUTATED BATF WILD-TYPE 
             3            486 
  BATF MUTATED BATF WILD-TYPE 
             3            486 
[1] "RNASE2 MUTATION ANALYSIS"
[1] 3
  RNASE2 MUTATED RNASE2 WILD-TYPE 
               5              484 
  RNASE2 MUTATED RNASE2 WILD-TYPE 
               5              484 
[1] "TRIO MUTATION ANALYSIS"
[1] 3
  TRIO MUTATED TRIO WILD-TYPE 
            32            457 
  TRIO MUTATED TRIO WILD-TYPE 
            32            457 
[1] "CTSL1 MUTATION ANALYSIS"
[1] 3
  CTSL1 MUTATED CTSL1 WILD-TYPE 
              8             481 
  CTSL1 MUTATED CTSL1 WILD-TYPE 
              8             481 
[1] "KIF5B MUTATION ANALYSIS"
[1] 3
  KIF5B MUTATED KIF5B WILD-TYPE 
             17             472 
  KIF5B MUTATED KIF5B WILD-TYPE 
             17             472 
[1] "TMEM41B MUTATION ANALYSIS"
[1] 3
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                5               484 
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                5               484 
[1] "NUDT16L1 MUTATION ANALYSIS"
[1] 3
  NUDT16L1 MUTATED NUDT16L1 WILD-TYPE 
                 3                486 
  NUDT16L1 MUTATED NUDT16L1 WILD-TYPE 
                 3                486 
[1] "SEMA3A MUTATION ANALYSIS"
[1] 3
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              16              473 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              16              473 
[1] "PCDHGA4 MUTATION ANALYSIS"
[1] 3
  PCDHGA4 MUTATED PCDHGA4 WILD-TYPE 
               19               470 
  PCDHGA4 MUTATED PCDHGA4 WILD-TYPE 
               19               470 
[1] "SNX33 MUTATION ANALYSIS"
[1] 3
  SNX33 MUTATED SNX33 WILD-TYPE 
             11             478 
  SNX33 MUTATED SNX33 WILD-TYPE 
             11             478 
[1] "BATF3 MUTATION ANALYSIS"
[1] 3
  BATF3 MUTATED BATF3 WILD-TYPE 
              4             485 
  BATF3 MUTATED BATF3 WILD-TYPE 
              4             485 
[1] "KBTBD8 MUTATION ANALYSIS"
[1] 3
  KBTBD8 MUTATED KBTBD8 WILD-TYPE 
               8              481 
  KBTBD8 MUTATED KBTBD8 WILD-TYPE 
               8              481 
[1] "RHBDD1 MUTATION ANALYSIS"
[1] 3
  RHBDD1 MUTATED RHBDD1 WILD-TYPE 
               8              481 
  RHBDD1 MUTATED RHBDD1 WILD-TYPE 
               8              481 
[1] "CPEB1 MUTATION ANALYSIS"
[1] 3
  CPEB1 MUTATED CPEB1 WILD-TYPE 
              7             482 
  CPEB1 MUTATED CPEB1 WILD-TYPE 
              7             482 
[1] "SKIV2L2 MUTATION ANALYSIS"
[1] 3
  SKIV2L2 MUTATED SKIV2L2 WILD-TYPE 
               13               476 
  SKIV2L2 MUTATED SKIV2L2 WILD-TYPE 
               13               476 
[1] "AMPD1 MUTATION ANALYSIS"
[1] 3
  AMPD1 MUTATED AMPD1 WILD-TYPE 
             18             471 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
             18             471 
[1] "MIPEP MUTATION ANALYSIS"
[1] 3
  MIPEP MUTATED MIPEP WILD-TYPE 
              9             480 
  MIPEP MUTATED MIPEP WILD-TYPE 
              9             480 
[1] "KRT39 MUTATION ANALYSIS"
[1] 3
  KRT39 MUTATED KRT39 WILD-TYPE 
              7             482 
  KRT39 MUTATED KRT39 WILD-TYPE 
              7             482 
[1] "DDX11 MUTATION ANALYSIS"
[1] 3
  DDX11 MUTATED DDX11 WILD-TYPE 
              8             481 
  DDX11 MUTATED DDX11 WILD-TYPE 
              8             481 
[1] "VEPH1 MUTATION ANALYSIS"
[1] 3
  VEPH1 MUTATED VEPH1 WILD-TYPE 
             20             469 
  VEPH1 MUTATED VEPH1 WILD-TYPE 
             20             469 
[1] "OR2M5 MUTATION ANALYSIS"
[1] 3
  OR2M5 MUTATED OR2M5 WILD-TYPE 
             12             477 
  OR2M5 MUTATED OR2M5 WILD-TYPE 
             12             477 
[1] "RBP3 MUTATION ANALYSIS"
[1] 3
  RBP3 MUTATED RBP3 WILD-TYPE 
            14            475 
  RBP3 MUTATED RBP3 WILD-TYPE 
            14            475 
[1] "SGCE MUTATION ANALYSIS"
[1] 3
  SGCE MUTATED SGCE WILD-TYPE 
             8            481 
  SGCE MUTATED SGCE WILD-TYPE 
             8            481 
[1] "ZNF622 MUTATION ANALYSIS"
[1] 3
  ZNF622 MUTATED ZNF622 WILD-TYPE 
               9              480 
  ZNF622 MUTATED ZNF622 WILD-TYPE 
               9              480 
[1] "FAM160B1 MUTATION ANALYSIS"
[1] 3
  FAM160B1 MUTATED FAM160B1 WILD-TYPE 
                 9                480 
  FAM160B1 MUTATED FAM160B1 WILD-TYPE 
                 9                480 
[1] "UBD MUTATION ANALYSIS"
[1] 3
  UBD MUTATED UBD WILD-TYPE 
            4           485 
  UBD MUTATED UBD WILD-TYPE 
            4           485 
[1] "OR8K1 MUTATION ANALYSIS"
[1] 3
  OR8K1 MUTATED OR8K1 WILD-TYPE 
             13             476 
  OR8K1 MUTATED OR8K1 WILD-TYPE 
             13             476 
[1] "TAB1 MUTATION ANALYSIS"
[1] 3
  TAB1 MUTATED TAB1 WILD-TYPE 
             3            486 
  TAB1 MUTATED TAB1 WILD-TYPE 
             3            486 
[1] "SLC30A8 MUTATION ANALYSIS"
[1] 3
  SLC30A8 MUTATED SLC30A8 WILD-TYPE 
               17               472 
  SLC30A8 MUTATED SLC30A8 WILD-TYPE 
               17               472 
[1] "MPZL1 MUTATION ANALYSIS"
[1] 3
  MPZL1 MUTATED MPZL1 WILD-TYPE 
              7             482 
  MPZL1 MUTATED MPZL1 WILD-TYPE 
              7             482 
[1] "CCDC112 MUTATION ANALYSIS"
[1] 3
  CCDC112 MUTATED CCDC112 WILD-TYPE 
                9               480 
  CCDC112 MUTATED CCDC112 WILD-TYPE 
                9               480 
[1] "TOMM70A MUTATION ANALYSIS"
[1] 3
  TOMM70A MUTATED TOMM70A WILD-TYPE 
               10               479 
  TOMM70A MUTATED TOMM70A WILD-TYPE 
               10               479 
[1] "CDHR3 MUTATION ANALYSIS"
[1] 3
  CDHR3 MUTATED CDHR3 WILD-TYPE 
             15             474 
  CDHR3 MUTATED CDHR3 WILD-TYPE 
             15             474 
[1] "ZNF559 MUTATION ANALYSIS"
[1] 3
  ZNF559 MUTATED ZNF559 WILD-TYPE 
              16              473 
  ZNF559 MUTATED ZNF559 WILD-TYPE 
              16              473 
[1] "MAK MUTATION ANALYSIS"
[1] 3
  MAK MUTATED MAK WILD-TYPE 
           12           477 
  MAK MUTATED MAK WILD-TYPE 
           12           477 
[1] "GPR156 MUTATION ANALYSIS"
[1] 3
  GPR156 MUTATED GPR156 WILD-TYPE 
              14              475 
  GPR156 MUTATED GPR156 WILD-TYPE 
              14              475 
[1] "NIT2 MUTATION ANALYSIS"
[1] 3
  NIT2 MUTATED NIT2 WILD-TYPE 
             5            484 
  NIT2 MUTATED NIT2 WILD-TYPE 
             5            484 
[1] "KIAA2018 MUTATION ANALYSIS"
[1] 3
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                22                467 
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                22                467 
[1] "DCAF12L2 MUTATION ANALYSIS"
[1] 3
  DCAF12L2 MUTATED DCAF12L2 WILD-TYPE 
                20                469 
  DCAF12L2 MUTATED DCAF12L2 WILD-TYPE 
                20                469 
[1] "BMP10 MUTATION ANALYSIS"
[1] 3
  BMP10 MUTATED BMP10 WILD-TYPE 
             14             475 
  BMP10 MUTATED BMP10 WILD-TYPE 
             14             475 
[1] "FOXO4 MUTATION ANALYSIS"
[1] 3
  FOXO4 MUTATED FOXO4 WILD-TYPE 
             13             476 
  FOXO4 MUTATED FOXO4 WILD-TYPE 
             13             476 
[1] "SLITRK2 MUTATION ANALYSIS"
[1] 3
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               26               463 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               26               463 
[1] "MTF2 MUTATION ANALYSIS"
[1] 3
  MTF2 MUTATED MTF2 WILD-TYPE 
             9            480 
  MTF2 MUTATED MTF2 WILD-TYPE 
             9            480 
[1] "UBA7 MUTATION ANALYSIS"
[1] 3
  UBA7 MUTATED UBA7 WILD-TYPE 
            12            477 
  UBA7 MUTATED UBA7 WILD-TYPE 
            12            477 
[1] "MICAL1 MUTATION ANALYSIS"
[1] 3
  MICAL1 MUTATED MICAL1 WILD-TYPE 
               9              480 
  MICAL1 MUTATED MICAL1 WILD-TYPE 
               9              480 
[1] "TSPYL4 MUTATION ANALYSIS"
[1] 3
  TSPYL4 MUTATED TSPYL4 WILD-TYPE 
               4              485 
  TSPYL4 MUTATED TSPYL4 WILD-TYPE 
               4              485 
[1] "ZNF41 MUTATION ANALYSIS"
[1] 3
  ZNF41 MUTATED ZNF41 WILD-TYPE 
             11             478 
  ZNF41 MUTATED ZNF41 WILD-TYPE 
             11             478 
[1] "SLC26A7 MUTATION ANALYSIS"
[1] 3
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
               18               471 
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
               18               471 
[1] "ARMC2 MUTATION ANALYSIS"
[1] 3
  ARMC2 MUTATED ARMC2 WILD-TYPE 
              8             481 
  ARMC2 MUTATED ARMC2 WILD-TYPE 
              8             481 
[1] "RAGE MUTATION ANALYSIS"
[1] 3
  RAGE MUTATED RAGE WILD-TYPE 
             9            480 
  RAGE MUTATED RAGE WILD-TYPE 
             9            480 
[1] "TNNT2 MUTATION ANALYSIS"
[1] 3
  TNNT2 MUTATED TNNT2 WILD-TYPE 
              8             481 
  TNNT2 MUTATED TNNT2 WILD-TYPE 
              8             481 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
            40            449 
  CDH8 MUTATED CDH8 WILD-TYPE 
            40            449 
[1] "ADAM17 MUTATION ANALYSIS"
[1] 3
  ADAM17 MUTATED ADAM17 WILD-TYPE 
              13              476 
  ADAM17 MUTATED ADAM17 WILD-TYPE 
              13              476 
[1] "CHMP4B MUTATION ANALYSIS"
[1] 3
  CHMP4B MUTATED CHMP4B WILD-TYPE 
               3              486 
  CHMP4B MUTATED CHMP4B WILD-TYPE 
               3              486 
[1] "TMPRSS5 MUTATION ANALYSIS"
[1] 3
  TMPRSS5 MUTATED TMPRSS5 WILD-TYPE 
                7               482 
  TMPRSS5 MUTATED TMPRSS5 WILD-TYPE 
                7               482 
[1] "TTR MUTATION ANALYSIS"
[1] 3
  TTR MUTATED TTR WILD-TYPE 
            4           485 
  TTR MUTATED TTR WILD-TYPE 
            4           485 
[1] "TBC1D25 MUTATION ANALYSIS"
[1] 3
  TBC1D25 MUTATED TBC1D25 WILD-TYPE 
               11               478 
  TBC1D25 MUTATED TBC1D25 WILD-TYPE 
               11               478 
[1] "ZNF418 MUTATION ANALYSIS"
[1] 3
  ZNF418 MUTATED ZNF418 WILD-TYPE 
              14              475 
  ZNF418 MUTATED ZNF418 WILD-TYPE 
              14              475 
[1] "FOXA2 MUTATION ANALYSIS"
[1] 3
  FOXA2 MUTATED FOXA2 WILD-TYPE 
              7             482 
  FOXA2 MUTATED FOXA2 WILD-TYPE 
              7             482 
[1] "GSTM4 MUTATION ANALYSIS"
[1] 3
  GSTM4 MUTATED GSTM4 WILD-TYPE 
              6             483 
  GSTM4 MUTATED GSTM4 WILD-TYPE 
              6             483 
[1] "PCDHGC4 MUTATION ANALYSIS"
[1] 3
  PCDHGC4 MUTATED PCDHGC4 WILD-TYPE 
               15               474 
  PCDHGC4 MUTATED PCDHGC4 WILD-TYPE 
               15               474 
[1] "KIAA1967 MUTATION ANALYSIS"
[1] 3
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                12                477 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                12                477 
[1] "CPB1 MUTATION ANALYSIS"
[1] 3
  CPB1 MUTATED CPB1 WILD-TYPE 
             9            480 
  CPB1 MUTATED CPB1 WILD-TYPE 
             9            480 
[1] "PTPN1 MUTATION ANALYSIS"
[1] 3
  PTPN1 MUTATED PTPN1 WILD-TYPE 
             10             479 
  PTPN1 MUTATED PTPN1 WILD-TYPE 
             10             479 
[1] "ZNF266 MUTATION ANALYSIS"
[1] 3
  ZNF266 MUTATED ZNF266 WILD-TYPE 
               9              480 
  ZNF266 MUTATED ZNF266 WILD-TYPE 
               9              480 
[1] "BHLHE41 MUTATION ANALYSIS"
[1] 3
  BHLHE41 MUTATED BHLHE41 WILD-TYPE 
                5               484 
  BHLHE41 MUTATED BHLHE41 WILD-TYPE 
                5               484 
[1] "ADAMTS16 MUTATION ANALYSIS"
[1] 3
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                33                456 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                33                456 
[1] "MCM9 MUTATION ANALYSIS"
[1] 3
  MCM9 MUTATED MCM9 WILD-TYPE 
             9            480 
  MCM9 MUTATED MCM9 WILD-TYPE 
             9            480 
[1] "NSF MUTATION ANALYSIS"
[1] 3
  NSF MUTATED NSF WILD-TYPE 
            4           485 
  NSF MUTATED NSF WILD-TYPE 
            4           485 
[1] "SAMD11 MUTATION ANALYSIS"
[1] 3
  SAMD11 MUTATED SAMD11 WILD-TYPE 
               6              483 
  SAMD11 MUTATED SAMD11 WILD-TYPE 
               6              483 
[1] "MMP19 MUTATION ANALYSIS"
[1] 3
  MMP19 MUTATED MMP19 WILD-TYPE 
             12             477 
  MMP19 MUTATED MMP19 WILD-TYPE 
             12             477 
[1] "ATG10 MUTATION ANALYSIS"
[1] 3
  ATG10 MUTATED ATG10 WILD-TYPE 
              5             484 
  ATG10 MUTATED ATG10 WILD-TYPE 
              5             484 
[1] "TMSB15B MUTATION ANALYSIS"
[1] 3
  TMSB15B MUTATED TMSB15B WILD-TYPE 
                4               485 
  TMSB15B MUTATED TMSB15B WILD-TYPE 
                4               485 
[1] "GIMAP8 MUTATION ANALYSIS"
[1] 3
  GIMAP8 MUTATED GIMAP8 WILD-TYPE 
              21              468 
  GIMAP8 MUTATED GIMAP8 WILD-TYPE 
              21              468 
[1] "TNXB MUTATION ANALYSIS"
[1] 3
  TNXB MUTATED TNXB WILD-TYPE 
            43            446 
  TNXB MUTATED TNXB WILD-TYPE 
            43            446 
[1] "FBXL19 MUTATION ANALYSIS"
[1] 3
  FBXL19 MUTATED FBXL19 WILD-TYPE 
               7              482 
  FBXL19 MUTATED FBXL19 WILD-TYPE 
               7              482 
[1] "ANKRD6 MUTATION ANALYSIS"
[1] 3
  ANKRD6 MUTATED ANKRD6 WILD-TYPE 
              13              476 
  ANKRD6 MUTATED ANKRD6 WILD-TYPE 
              13              476 
[1] "WDR17 MUTATION ANALYSIS"
[1] 3
  WDR17 MUTATED WDR17 WILD-TYPE 
             26             463 
  WDR17 MUTATED WDR17 WILD-TYPE 
             26             463 
[1] "MRPL47 MUTATION ANALYSIS"
[1] 3
  MRPL47 MUTATED MRPL47 WILD-TYPE 
               6              483 
  MRPL47 MUTATED MRPL47 WILD-TYPE 
               6              483 
[1] "TRPV2 MUTATION ANALYSIS"
[1] 3
  TRPV2 MUTATED TRPV2 WILD-TYPE 
             12             477 
  TRPV2 MUTATED TRPV2 WILD-TYPE 
             12             477 
[1] "RAG1 MUTATION ANALYSIS"
[1] 3
  RAG1 MUTATED RAG1 WILD-TYPE 
            17            472 
  RAG1 MUTATED RAG1 WILD-TYPE 
            17            472 
[1] "IL8 MUTATION ANALYSIS"
[1] 3
  IL8 MUTATED IL8 WILD-TYPE 
            6           483 
  IL8 MUTATED IL8 WILD-TYPE 
            6           483 
[1] "CLTCL1 MUTATION ANALYSIS"
[1] 3
  CLTCL1 MUTATED CLTCL1 WILD-TYPE 
              20              469 
  CLTCL1 MUTATED CLTCL1 WILD-TYPE 
              20              469 
[1] "DCTN4 MUTATION ANALYSIS"
[1] 3
  DCTN4 MUTATED DCTN4 WILD-TYPE 
              6             483 
  DCTN4 MUTATED DCTN4 WILD-TYPE 
              6             483 
[1] "KLRK1 MUTATION ANALYSIS"
[1] 3
  KLRK1 MUTATED KLRK1 WILD-TYPE 
              8             481 
  KLRK1 MUTATED KLRK1 WILD-TYPE 
              8             481 
[1] "MGAT5 MUTATION ANALYSIS"
[1] 3
  MGAT5 MUTATED MGAT5 WILD-TYPE 
             13             476 
  MGAT5 MUTATED MGAT5 WILD-TYPE 
             13             476 
[1] "SPANXN3 MUTATION ANALYSIS"
[1] 3
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                9               480 
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                9               480 
[1] "CYP27B1 MUTATION ANALYSIS"
[1] 3
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                8               481 
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                8               481 
[1] "CASC5 MUTATION ANALYSIS"
[1] 3
  CASC5 MUTATED CASC5 WILD-TYPE 
             22             467 
  CASC5 MUTATED CASC5 WILD-TYPE 
             22             467 
[1] "PRKCG MUTATION ANALYSIS"
[1] 3
  PRKCG MUTATED PRKCG WILD-TYPE 
             24             465 
  PRKCG MUTATED PRKCG WILD-TYPE 
             24             465 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               52               437 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               52               437 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             15             474 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             15             474 
[1] "EHBP1L1 MUTATION ANALYSIS"
[1] 3
  EHBP1L1 MUTATED EHBP1L1 WILD-TYPE 
                8               481 
  EHBP1L1 MUTATED EHBP1L1 WILD-TYPE 
                8               481 
[1] "CNOT6L MUTATION ANALYSIS"
[1] 3
  CNOT6L MUTATED CNOT6L WILD-TYPE 
               7              482 
  CNOT6L MUTATED CNOT6L WILD-TYPE 
               7              482 
[1] "C3ORF27 MUTATION ANALYSIS"
[1] 3
  C3ORF27 MUTATED C3ORF27 WILD-TYPE 
                3               486 
  C3ORF27 MUTATED C3ORF27 WILD-TYPE 
                3               486 
[1] "TNFRSF13B MUTATION ANALYSIS"
[1] 3
  TNFRSF13B MUTATED TNFRSF13B WILD-TYPE 
                  7                 482 
  TNFRSF13B MUTATED TNFRSF13B WILD-TYPE 
                  7                 482 
[1] "OTUD4 MUTATION ANALYSIS"
[1] 3
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             20             469 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             20             469 
[1] "MYO5A MUTATION ANALYSIS"
[1] 3
  MYO5A MUTATED MYO5A WILD-TYPE 
             23             466 
  MYO5A MUTATED MYO5A WILD-TYPE 
             23             466 
[1] "MNT MUTATION ANALYSIS"
[1] 3
  MNT MUTATED MNT WILD-TYPE 
            8           481 
  MNT MUTATED MNT WILD-TYPE 
            8           481 
[1] "CAMK1 MUTATION ANALYSIS"
[1] 3
  CAMK1 MUTATED CAMK1 WILD-TYPE 
              8             481 
  CAMK1 MUTATED CAMK1 WILD-TYPE 
              8             481 
[1] "SRRM3 MUTATION ANALYSIS"
[1] 3
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              3             486 
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              3             486 
[1] "SFRS12IP1 MUTATION ANALYSIS"
[1] 3
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  5                 484 
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  5                 484 
[1] "SBF1 MUTATION ANALYSIS"
[1] 3
  SBF1 MUTATED SBF1 WILD-TYPE 
            16            473 
  SBF1 MUTATED SBF1 WILD-TYPE 
            16            473 
[1] "MYST3 MUTATION ANALYSIS"
[1] 3
  MYST3 MUTATED MYST3 WILD-TYPE 
             27             462 
  MYST3 MUTATED MYST3 WILD-TYPE 
             27             462 
[1] "ZNF846 MUTATION ANALYSIS"
[1] 3
  ZNF846 MUTATED ZNF846 WILD-TYPE 
              10              479 
  ZNF846 MUTATED ZNF846 WILD-TYPE 
              10              479 
[1] "TEX11 MUTATION ANALYSIS"
[1] 3
  TEX11 MUTATED TEX11 WILD-TYPE 
             21             468 
  TEX11 MUTATED TEX11 WILD-TYPE 
             21             468 
[1] "ZP3 MUTATION ANALYSIS"
[1] 3
  ZP3 MUTATED ZP3 WILD-TYPE 
            7           482 
  ZP3 MUTATED ZP3 WILD-TYPE 
            7           482 
[1] "GLI4 MUTATION ANALYSIS"
[1] 3
  GLI4 MUTATED GLI4 WILD-TYPE 
             5            484 
  GLI4 MUTATED GLI4 WILD-TYPE 
             5            484 
[1] "SORBS1 MUTATION ANALYSIS"
[1] 3
  SORBS1 MUTATED SORBS1 WILD-TYPE 
              12              477 
  SORBS1 MUTATED SORBS1 WILD-TYPE 
              12              477 
[1] "ITGA2 MUTATION ANALYSIS"
[1] 3
  ITGA2 MUTATED ITGA2 WILD-TYPE 
              9             480 
  ITGA2 MUTATED ITGA2 WILD-TYPE 
              9             480 
[1] "PRSS27 MUTATION ANALYSIS"
[1] 3
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               4              485 
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               4              485 
[1] "GLT25D1 MUTATION ANALYSIS"
[1] 3
  GLT25D1 MUTATED GLT25D1 WILD-TYPE 
                9               480 
  GLT25D1 MUTATED GLT25D1 WILD-TYPE 
                9               480 
[1] "FAM167B MUTATION ANALYSIS"
[1] 3
  FAM167B MUTATED FAM167B WILD-TYPE 
                4               485 
  FAM167B MUTATED FAM167B WILD-TYPE 
                4               485 
[1] "OR5AN1 MUTATION ANALYSIS"
[1] 3
  OR5AN1 MUTATED OR5AN1 WILD-TYPE 
               6              483 
  OR5AN1 MUTATED OR5AN1 WILD-TYPE 
               6              483 
[1] "SETD7 MUTATION ANALYSIS"
[1] 3
  SETD7 MUTATED SETD7 WILD-TYPE 
              9             480 
  SETD7 MUTATED SETD7 WILD-TYPE 
              9             480 
[1] "ARHGAP10 MUTATION ANALYSIS"
[1] 3
  ARHGAP10 MUTATED ARHGAP10 WILD-TYPE 
                 9                480 
  ARHGAP10 MUTATED ARHGAP10 WILD-TYPE 
                 9                480 
[1] "C9ORF102 MUTATION ANALYSIS"
[1] 3
  C9ORF102 MUTATED C9ORF102 WILD-TYPE 
                10                479 
  C9ORF102 MUTATED C9ORF102 WILD-TYPE 
                10                479 
[1] "LRMP MUTATION ANALYSIS"
[1] 3
  LRMP MUTATED LRMP WILD-TYPE 
             7            482 
  LRMP MUTATED LRMP WILD-TYPE 
             7            482 
[1] "LSM14A MUTATION ANALYSIS"
[1] 3
  LSM14A MUTATED LSM14A WILD-TYPE 
              11              478 
  LSM14A MUTATED LSM14A WILD-TYPE 
              11              478 
[1] "SMPDL3B MUTATION ANALYSIS"
[1] 3
  SMPDL3B MUTATED SMPDL3B WILD-TYPE 
                9               480 
  SMPDL3B MUTATED SMPDL3B WILD-TYPE 
                9               480 
[1] "KIF26A MUTATION ANALYSIS"
[1] 3
  KIF26A MUTATED KIF26A WILD-TYPE 
              10              479 
  KIF26A MUTATED KIF26A WILD-TYPE 
              10              479 
[1] "KDELR2 MUTATION ANALYSIS"
[1] 3
  KDELR2 MUTATED KDELR2 WILD-TYPE 
               6              483 
  KDELR2 MUTATED KDELR2 WILD-TYPE 
               6              483 
[1] "SIAH2 MUTATION ANALYSIS"
[1] 3
  SIAH2 MUTATED SIAH2 WILD-TYPE 
              9             480 
  SIAH2 MUTATED SIAH2 WILD-TYPE 
              9             480 
[1] "C6ORF203 MUTATION ANALYSIS"
[1] 3
  C6ORF203 MUTATED C6ORF203 WILD-TYPE 
                 5                484 
  C6ORF203 MUTATED C6ORF203 WILD-TYPE 
                 5                484 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              29              460 
  GPR158 MUTATED GPR158 WILD-TYPE 
              29              460 
[1] "CSNK1E MUTATION ANALYSIS"
[1] 3
  CSNK1E MUTATED CSNK1E WILD-TYPE 
               9              480 
  CSNK1E MUTATED CSNK1E WILD-TYPE 
               9              480 
[1] "RNF103 MUTATION ANALYSIS"
[1] 3
  RNF103 MUTATED RNF103 WILD-TYPE 
               9              480 
  RNF103 MUTATED RNF103 WILD-TYPE 
               9              480 
[1] "CEBPA MUTATION ANALYSIS"
[1] 3
  CEBPA MUTATED CEBPA WILD-TYPE 
             17             472 
  CEBPA MUTATED CEBPA WILD-TYPE 
             17             472 
[1] "YWHAH MUTATION ANALYSIS"
[1] 3
  YWHAH MUTATED YWHAH WILD-TYPE 
              5             484 
  YWHAH MUTATED YWHAH WILD-TYPE 
              5             484 
[1] "OR5A1 MUTATION ANALYSIS"
[1] 3
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              5             484 
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              5             484 
[1] "IP6K3 MUTATION ANALYSIS"
[1] 3
  IP6K3 MUTATED IP6K3 WILD-TYPE 
              9             480 
  IP6K3 MUTATED IP6K3 WILD-TYPE 
              9             480 
[1] "CLSTN1 MUTATION ANALYSIS"
[1] 3
  CLSTN1 MUTATED CLSTN1 WILD-TYPE 
              16              473 
  CLSTN1 MUTATED CLSTN1 WILD-TYPE 
              16              473 
[1] "EPC2 MUTATION ANALYSIS"
[1] 3
  EPC2 MUTATED EPC2 WILD-TYPE 
            10            479 
  EPC2 MUTATED EPC2 WILD-TYPE 
            10            479 
[1] "SKIV2L MUTATION ANALYSIS"
[1] 3
  SKIV2L MUTATED SKIV2L WILD-TYPE 
              13              476 
  SKIV2L MUTATED SKIV2L WILD-TYPE 
              13              476 
[1] "COL5A2 MUTATION ANALYSIS"
[1] 3
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              22              467 
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              22              467 
[1] "CPO MUTATION ANALYSIS"
[1] 3
  CPO MUTATED CPO WILD-TYPE 
            9           480 
  CPO MUTATED CPO WILD-TYPE 
            9           480 
[1] "CLK4 MUTATION ANALYSIS"
[1] 3
  CLK4 MUTATED CLK4 WILD-TYPE 
             9            480 
  CLK4 MUTATED CLK4 WILD-TYPE 
             9            480 
[1] "SLC9A2 MUTATION ANALYSIS"
[1] 3
  SLC9A2 MUTATED SLC9A2 WILD-TYPE 
              12              477 
  SLC9A2 MUTATED SLC9A2 WILD-TYPE 
              12              477 
[1] "KIAA0196 MUTATION ANALYSIS"
[1] 3
  KIAA0196 MUTATED KIAA0196 WILD-TYPE 
                11                478 
  KIAA0196 MUTATED KIAA0196 WILD-TYPE 
                11                478 
[1] "ANGPTL2 MUTATION ANALYSIS"
[1] 3
  ANGPTL2 MUTATED ANGPTL2 WILD-TYPE 
               13               476 
  ANGPTL2 MUTATED ANGPTL2 WILD-TYPE 
               13               476 
[1] "C2ORF49 MUTATION ANALYSIS"
[1] 3
  C2ORF49 MUTATED C2ORF49 WILD-TYPE 
                5               484 
  C2ORF49 MUTATED C2ORF49 WILD-TYPE 
                5               484 
[1] "ATG4D MUTATION ANALYSIS"
[1] 3
  ATG4D MUTATED ATG4D WILD-TYPE 
             12             477 
  ATG4D MUTATED ATG4D WILD-TYPE 
             12             477 
[1] "MUS81 MUTATION ANALYSIS"
[1] 3
  MUS81 MUTATED MUS81 WILD-TYPE 
              7             482 
  MUS81 MUTATED MUS81 WILD-TYPE 
              7             482 
[1] "AKT1 MUTATION ANALYSIS"
[1] 3
  AKT1 MUTATED AKT1 WILD-TYPE 
            11            478 
  AKT1 MUTATED AKT1 WILD-TYPE 
            11            478 
[1] "OGFRL1 MUTATION ANALYSIS"
[1] 3
  OGFRL1 MUTATED OGFRL1 WILD-TYPE 
              10              479 
  OGFRL1 MUTATED OGFRL1 WILD-TYPE 
              10              479 
[1] "VPS72 MUTATION ANALYSIS"
[1] 3
  VPS72 MUTATED VPS72 WILD-TYPE 
              8             481 
  VPS72 MUTATED VPS72 WILD-TYPE 
              8             481 
[1] "ALG9 MUTATION ANALYSIS"
[1] 3
  ALG9 MUTATED ALG9 WILD-TYPE 
             4            485 
  ALG9 MUTATED ALG9 WILD-TYPE 
             4            485 
[1] "TAX1BP1 MUTATION ANALYSIS"
[1] 3
  TAX1BP1 MUTATED TAX1BP1 WILD-TYPE 
               14               475 
  TAX1BP1 MUTATED TAX1BP1 WILD-TYPE 
               14               475 
[1] "MAGEB2 MUTATION ANALYSIS"
[1] 3
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
              14              475 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
              14              475 
[1] "SLCO6A1 MUTATION ANALYSIS"
[1] 3
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
               28               461 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
               28               461 
[1] "HIST1H3B MUTATION ANALYSIS"
[1] 3
  HIST1H3B MUTATED HIST1H3B WILD-TYPE 
                 4                485 
  HIST1H3B MUTATED HIST1H3B WILD-TYPE 
                 4                485 
[1] "TBCE MUTATION ANALYSIS"
[1] 3
  TBCE MUTATED TBCE WILD-TYPE 
             3            486 
  TBCE MUTATED TBCE WILD-TYPE 
             3            486 
[1] "GLTPD2 MUTATION ANALYSIS"
[1] 3
  GLTPD2 MUTATED GLTPD2 WILD-TYPE 
               4              485 
  GLTPD2 MUTATED GLTPD2 WILD-TYPE 
               4              485 
[1] "KIAA0922 MUTATION ANALYSIS"
[1] 3
  KIAA0922 MUTATED KIAA0922 WILD-TYPE 
                21                468 
  KIAA0922 MUTATED KIAA0922 WILD-TYPE 
                21                468 
[1] "STK3 MUTATION ANALYSIS"
[1] 3
  STK3 MUTATED STK3 WILD-TYPE 
             9            480 
  STK3 MUTATED STK3 WILD-TYPE 
             9            480 
[1] "SLC35A1 MUTATION ANALYSIS"
[1] 3
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                3               486 
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                3               486 
[1] "GLRA3 MUTATION ANALYSIS"
[1] 3
  GLRA3 MUTATED GLRA3 WILD-TYPE 
             10             479 
  GLRA3 MUTATED GLRA3 WILD-TYPE 
             10             479 
[1] "FKBP5 MUTATION ANALYSIS"
[1] 3
  FKBP5 MUTATED FKBP5 WILD-TYPE 
              7             482 
  FKBP5 MUTATED FKBP5 WILD-TYPE 
              7             482 
[1] "C6ORF15 MUTATION ANALYSIS"
[1] 3
  C6ORF15 MUTATED C6ORF15 WILD-TYPE 
                6               483 
  C6ORF15 MUTATED C6ORF15 WILD-TYPE 
                6               483 
[1] "ZC3H12C MUTATION ANALYSIS"
[1] 3
  ZC3H12C MUTATED ZC3H12C WILD-TYPE 
               15               474 
  ZC3H12C MUTATED ZC3H12C WILD-TYPE 
               15               474 
[1] "IFI35 MUTATION ANALYSIS"
[1] 3
  IFI35 MUTATED IFI35 WILD-TYPE 
              8             481 
  IFI35 MUTATED IFI35 WILD-TYPE 
              8             481 
[1] "OR2F2 MUTATION ANALYSIS"
[1] 3
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              8             481 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              8             481 
[1] "SLC27A3 MUTATION ANALYSIS"
[1] 3
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                7               482 
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                7               482 
[1] "C6ORF70 MUTATION ANALYSIS"
[1] 3
  C6ORF70 MUTATED C6ORF70 WILD-TYPE 
               14               475 
  C6ORF70 MUTATED C6ORF70 WILD-TYPE 
               14               475 
[1] "SFI1 MUTATION ANALYSIS"
[1] 3
  SFI1 MUTATED SFI1 WILD-TYPE 
            12            477 
  SFI1 MUTATED SFI1 WILD-TYPE 
            12            477 
[1] "ELANE MUTATION ANALYSIS"
[1] 3
  ELANE MUTATED ELANE WILD-TYPE 
              7             482 
  ELANE MUTATED ELANE WILD-TYPE 
              7             482 
[1] "QSER1 MUTATION ANALYSIS"
[1] 3
  QSER1 MUTATED QSER1 WILD-TYPE 
             17             472 
  QSER1 MUTATED QSER1 WILD-TYPE 
             17             472 
[1] "DAGLB MUTATION ANALYSIS"
[1] 3
  DAGLB MUTATED DAGLB WILD-TYPE 
              6             483 
  DAGLB MUTATED DAGLB WILD-TYPE 
              6             483 
[1] "CXCL9 MUTATION ANALYSIS"
[1] 3
  CXCL9 MUTATED CXCL9 WILD-TYPE 
              7             482 
  CXCL9 MUTATED CXCL9 WILD-TYPE 
              7             482 
[1] "CCDC111 MUTATION ANALYSIS"
[1] 3
  CCDC111 MUTATED CCDC111 WILD-TYPE 
                9               480 
  CCDC111 MUTATED CCDC111 WILD-TYPE 
                9               480 
[1] "FER1L6 MUTATION ANALYSIS"
[1] 3
  FER1L6 MUTATED FER1L6 WILD-TYPE 
              33              456 
  FER1L6 MUTATED FER1L6 WILD-TYPE 
              33              456 
[1] "NUP107 MUTATION ANALYSIS"
[1] 3
  NUP107 MUTATED NUP107 WILD-TYPE 
              13              476 
  NUP107 MUTATED NUP107 WILD-TYPE 
              13              476 
[1] "HIP1 MUTATION ANALYSIS"
[1] 3
  HIP1 MUTATED HIP1 WILD-TYPE 
            14            475 
  HIP1 MUTATED HIP1 WILD-TYPE 
            14            475 
[1] "AP3B1 MUTATION ANALYSIS"
[1] 3
  AP3B1 MUTATED AP3B1 WILD-TYPE 
             12             477 
  AP3B1 MUTATED AP3B1 WILD-TYPE 
             12             477 
[1] "C10ORF81 MUTATION ANALYSIS"
[1] 3
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 4                485 
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 4                485 
[1] "LY75 MUTATION ANALYSIS"
[1] 3
  LY75 MUTATED LY75 WILD-TYPE 
            11            478 
  LY75 MUTATED LY75 WILD-TYPE 
            11            478 
[1] "RRP9 MUTATION ANALYSIS"
[1] 3
  RRP9 MUTATED RRP9 WILD-TYPE 
            14            475 
  RRP9 MUTATED RRP9 WILD-TYPE 
            14            475 
[1] "CUTC MUTATION ANALYSIS"
[1] 3
  CUTC MUTATED CUTC WILD-TYPE 
             5            484 
  CUTC MUTATED CUTC WILD-TYPE 
             5            484 
[1] "CAPS2 MUTATION ANALYSIS"
[1] 3
  CAPS2 MUTATED CAPS2 WILD-TYPE 
             12             477 
  CAPS2 MUTATED CAPS2 WILD-TYPE 
             12             477 
[1] "ESYT1 MUTATION ANALYSIS"
[1] 3
  ESYT1 MUTATED ESYT1 WILD-TYPE 
             10             479 
  ESYT1 MUTATED ESYT1 WILD-TYPE 
             10             479 
[1] "KRT1 MUTATION ANALYSIS"
[1] 3
  KRT1 MUTATED KRT1 WILD-TYPE 
            15            474 
  KRT1 MUTATED KRT1 WILD-TYPE 
            15            474 
[1] "SUPT6H MUTATION ANALYSIS"
[1] 3
  SUPT6H MUTATED SUPT6H WILD-TYPE 
              23              466 
  SUPT6H MUTATED SUPT6H WILD-TYPE 
              23              466 
[1] "IGJ MUTATION ANALYSIS"
[1] 3
  IGJ MUTATED IGJ WILD-TYPE 
            4           485 
  IGJ MUTATED IGJ WILD-TYPE 
            4           485 
[1] "TRAF3 MUTATION ANALYSIS"
[1] 3
  TRAF3 MUTATED TRAF3 WILD-TYPE 
             12             477 
  TRAF3 MUTATED TRAF3 WILD-TYPE 
             12             477 
[1] "IPO11 MUTATION ANALYSIS"
[1] 3
  IPO11 MUTATED IPO11 WILD-TYPE 
             15             474 
  IPO11 MUTATED IPO11 WILD-TYPE 
             15             474 
[1] "AFF3 MUTATION ANALYSIS"
[1] 3
  AFF3 MUTATED AFF3 WILD-TYPE 
            25            464 
  AFF3 MUTATED AFF3 WILD-TYPE 
            25            464 
[1] "BTBD7 MUTATION ANALYSIS"
[1] 3
  BTBD7 MUTATED BTBD7 WILD-TYPE 
             12             477 
  BTBD7 MUTATED BTBD7 WILD-TYPE 
             12             477 
[1] "SUSD5 MUTATION ANALYSIS"
[1] 3
  SUSD5 MUTATED SUSD5 WILD-TYPE 
              9             480 
  SUSD5 MUTATED SUSD5 WILD-TYPE 
              9             480 
[1] "CDKL4 MUTATION ANALYSIS"
[1] 3
  CDKL4 MUTATED CDKL4 WILD-TYPE 
              5             484 
  CDKL4 MUTATED CDKL4 WILD-TYPE 
              5             484 
[1] "B3GALNT2 MUTATION ANALYSIS"
[1] 3
  B3GALNT2 MUTATED B3GALNT2 WILD-TYPE 
                 3                486 
  B3GALNT2 MUTATED B3GALNT2 WILD-TYPE 
                 3                486 
[1] "OR4N5 MUTATION ANALYSIS"
[1] 3
  OR4N5 MUTATED OR4N5 WILD-TYPE 
              3             486 
  OR4N5 MUTATED OR4N5 WILD-TYPE 
              3             486 
[1] "GADD45GIP1 MUTATION ANALYSIS"
[1] 3
  GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE 
                   4                  485 
  GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE 
                   4                  485 
[1] "RASGRP3 MUTATION ANALYSIS"
[1] 3
  RASGRP3 MUTATED RASGRP3 WILD-TYPE 
               13               476 
  RASGRP3 MUTATED RASGRP3 WILD-TYPE 
               13               476 
[1] "STOX2 MUTATION ANALYSIS"
[1] 3
  STOX2 MUTATED STOX2 WILD-TYPE 
             10             479 
  STOX2 MUTATED STOX2 WILD-TYPE 
             10             479 
[1] "SIGLEC14 MUTATION ANALYSIS"
[1] 3
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 8                481 
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 8                481 
[1] "CALCR MUTATION ANALYSIS"
[1] 3
  CALCR MUTATED CALCR WILD-TYPE 
             12             477 
  CALCR MUTATED CALCR WILD-TYPE 
             12             477 
[1] "TXNRD1 MUTATION ANALYSIS"
[1] 3
  TXNRD1 MUTATED TXNRD1 WILD-TYPE 
               9              480 
  TXNRD1 MUTATED TXNRD1 WILD-TYPE 
               9              480 
[1] "ZFP1 MUTATION ANALYSIS"
[1] 3
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             4            485 
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             4            485 
[1] "FAM199X MUTATION ANALYSIS"
[1] 3
  FAM199X MUTATED FAM199X WILD-TYPE 
               10               479 
  FAM199X MUTATED FAM199X WILD-TYPE 
               10               479 
[1] "GABRB2 MUTATION ANALYSIS"
[1] 3
  GABRB2 MUTATED GABRB2 WILD-TYPE 
              10              479 
  GABRB2 MUTATED GABRB2 WILD-TYPE 
              10              479 
[1] "NAA15 MUTATION ANALYSIS"
[1] 3
  NAA15 MUTATED NAA15 WILD-TYPE 
             15             474 
  NAA15 MUTATED NAA15 WILD-TYPE 
             15             474 
[1] "GNA15 MUTATION ANALYSIS"
[1] 3
  GNA15 MUTATED GNA15 WILD-TYPE 
              6             483 
  GNA15 MUTATED GNA15 WILD-TYPE 
              6             483 
[1] "ZNF274 MUTATION ANALYSIS"
[1] 3
  ZNF274 MUTATED ZNF274 WILD-TYPE 
               7              482 
  ZNF274 MUTATED ZNF274 WILD-TYPE 
               7              482 
[1] "ZNF763 MUTATION ANALYSIS"
[1] 3
  ZNF763 MUTATED ZNF763 WILD-TYPE 
              11              478 
  ZNF763 MUTATED ZNF763 WILD-TYPE 
              11              478 
[1] "PRKRIR MUTATION ANALYSIS"
[1] 3
  PRKRIR MUTATED PRKRIR WILD-TYPE 
              12              477 
  PRKRIR MUTATED PRKRIR WILD-TYPE 
              12              477 
[1] "PKIA MUTATION ANALYSIS"
[1] 3
  PKIA MUTATED PKIA WILD-TYPE 
            10            479 
  PKIA MUTATED PKIA WILD-TYPE 
            10            479 
[1] "SYNJ1 MUTATION ANALYSIS"
[1] 3
  SYNJ1 MUTATED SYNJ1 WILD-TYPE 
             19             470 
  SYNJ1 MUTATED SYNJ1 WILD-TYPE 
             19             470 
[1] "TEX14 MUTATION ANALYSIS"
[1] 3
  TEX14 MUTATED TEX14 WILD-TYPE 
             25             464 
  TEX14 MUTATED TEX14 WILD-TYPE 
             25             464 
[1] "F9 MUTATION ANALYSIS"
[1] 3
  F9 MUTATED F9 WILD-TYPE 
          20          469 
  F9 MUTATED F9 WILD-TYPE 
          20          469 
[1] "SMEK1 MUTATION ANALYSIS"
[1] 3
  SMEK1 MUTATED SMEK1 WILD-TYPE 
              9             480 
  SMEK1 MUTATED SMEK1 WILD-TYPE 
              9             480 
[1] "TSC1 MUTATION ANALYSIS"
[1] 3
  TSC1 MUTATED TSC1 WILD-TYPE 
            14            475 
  TSC1 MUTATED TSC1 WILD-TYPE 
            14            475 
[1] "HPCA MUTATION ANALYSIS"
[1] 3
  HPCA MUTATED HPCA WILD-TYPE 
             6            483 
  HPCA MUTATED HPCA WILD-TYPE 
             6            483 
[1] "EIF2B3 MUTATION ANALYSIS"
[1] 3
  EIF2B3 MUTATED EIF2B3 WILD-TYPE 
               6              483 
  EIF2B3 MUTATED EIF2B3 WILD-TYPE 
               6              483 
[1] "LRIG1 MUTATION ANALYSIS"
[1] 3
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             15             474 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             15             474 
[1] "SEC14L1 MUTATION ANALYSIS"
[1] 3
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
               11               478 
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
               11               478 
[1] "ZNF142 MUTATION ANALYSIS"
[1] 3
  ZNF142 MUTATED ZNF142 WILD-TYPE 
              15              474 
  ZNF142 MUTATED ZNF142 WILD-TYPE 
              15              474 
[1] "SLC22A4 MUTATION ANALYSIS"
[1] 3
  SLC22A4 MUTATED SLC22A4 WILD-TYPE 
                5               484 
  SLC22A4 MUTATED SLC22A4 WILD-TYPE 
                5               484 
[1] "KLHDC9 MUTATION ANALYSIS"
[1] 3
  KLHDC9 MUTATED KLHDC9 WILD-TYPE 
               5              484 
  KLHDC9 MUTATED KLHDC9 WILD-TYPE 
               5              484 
[1] "ANKRD12 MUTATION ANALYSIS"
[1] 3
  ANKRD12 MUTATED ANKRD12 WILD-TYPE 
               26               463 
  ANKRD12 MUTATED ANKRD12 WILD-TYPE 
               26               463 
[1] "CTNND1 MUTATION ANALYSIS"
[1] 3
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              20              469 
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              20              469 
[1] "RBM16 MUTATION ANALYSIS"
[1] 3
  RBM16 MUTATED RBM16 WILD-TYPE 
             16             473 
  RBM16 MUTATED RBM16 WILD-TYPE 
             16             473 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             19             470 
  RASA1 MUTATED RASA1 WILD-TYPE 
             19             470 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 489 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 489 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       25     47     47     34
  APC WILD-TYPE     21     11     17      9
D1V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          25            21
  CLUS_2          47            11
  CLUS_3          47            17
  CLUS_4          34             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       29     69     55
  APC WILD-TYPE     22     14     22
D1V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          29            22
  CLUS_2          69            14
  CLUS_3          55            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED      134    156     89     17
  APC WILD-TYPE     44     27     12      3
D1V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1         134            44
  CLUS_2         156            27
  CLUS_3          89            12
  CLUS_4          17             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       79     78     87
  APC WILD-TYPE      8      2     13
D1V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          79             8
  CLUS_2          78             2
  CLUS_3          87            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       68    137    115
  APC WILD-TYPE     21     23     23
D1V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          68            21
  CLUS_2         137            23
  CLUS_3         115            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED      154    109     57
  APC WILD-TYPE     28     24     15
D1V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1         154            28
  CLUS_2         109            24
  CLUS_3          57            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED      101     86     79    135
  APC WILD-TYPE     11     10     13     51
D1V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1         101            11
  CLUS_2          86            10
  CLUS_3          79            13
  CLUS_4         135            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APC MUTATED       60     46     39     36     54     97     69
  APC WILD-TYPE      0      4     10      4      9     28     30
D1V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          60             0
  CLUS_2          46             4
  CLUS_3          39            10
  CLUS_4          36             4
  CLUS_5          54             9
  CLUS_6          97            28
  CLUS_7          69            30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED      120     65     67    140
  APC WILD-TYPE     10     13      1     56
D1V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1         120            10
  CLUS_2          65            13
  CLUS_3          67             1
  CLUS_4         140            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  APC MUTATED       37     53     27     68     45     40     41     18     63
  APC WILD-TYPE      3      9      1     12     24      8      2     10     11
D1V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          37             3
  CLUS_2          53             9
  CLUS_3          27             1
  CLUS_4          68            12
  CLUS_5          45            24
  CLUS_6          40             8
  CLUS_7          41             2
  CLUS_8          18            10
  CLUS_9          63            11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       31     26     27     15
  APC WILD-TYPE      2      5      0      4
D1V11, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          31             2
  CLUS_2          26             5
  CLUS_3          27             0
  CLUS_4          15             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       46      9     22     22
  APC WILD-TYPE      8      1      2      0
D1V12, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          46             8
  CLUS_2           9             1
  CLUS_3          22             2
  CLUS_4          22             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       19     40     39     16
  TP53 WILD-TYPE     27     18     25     27
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             27
  CLUS_2           40             18
  CLUS_3           39             25
  CLUS_4           16             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       16     59     39
  TP53 WILD-TYPE     35     24     38
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             35
  CLUS_2           59             24
  CLUS_3           39             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       77    150     75     15
  TP53 WILD-TYPE    101     33     26      5
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           77            101
  CLUS_2          150             33
  CLUS_3           75             26
  CLUS_4           15              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       69     65     72
  TP53 WILD-TYPE     18     15     28
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           69             18
  CLUS_2           65             15
  CLUS_3           72             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       51    105     98
  TP53 WILD-TYPE     38     55     40
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           51             38
  CLUS_2          105             55
  CLUS_3           98             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED      126     86     42
  TP53 WILD-TYPE     56     47     30
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          126             56
  CLUS_2           86             47
  CLUS_3           42             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       84     64     68    105
  TP53 WILD-TYPE     28     32     24     81
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           84             28
  CLUS_2           64             32
  CLUS_3           68             24
  CLUS_4          105             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TP53 MUTATED       44     36     29     36     53     83     40
  TP53 WILD-TYPE     16     14     20      4     10     42     59
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           44             16
  CLUS_2           36             14
  CLUS_3           29             20
  CLUS_4           36              4
  CLUS_5           53             10
  CLUS_6           83             42
  CLUS_7           40             59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      100     55     58    102
  TP53 WILD-TYPE     30     23     10     94
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          100             30
  CLUS_2           55             23
  CLUS_3           58             10
  CLUS_4          102             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TP53 MUTATED       28     45     23     58     34     25     36     11     55
  TP53 WILD-TYPE     12     17      5     22     35     23      7     17     19
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           28             12
  CLUS_2           45             17
  CLUS_3           23              5
  CLUS_4           58             22
  CLUS_5           34             35
  CLUS_6           25             23
  CLUS_7           36              7
  CLUS_8           11             17
  CLUS_9           55             19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       25     25     24     13
  TP53 WILD-TYPE      8      6      3      6
D2V11, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           25              8
  CLUS_2           25              6
  CLUS_3           24              3
  CLUS_4           13              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       39      9     19     20
  TP53 WILD-TYPE     15      1      5      2
D2V12, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           39             15
  CLUS_2            9              1
  CLUS_3           19              5
  CLUS_4           20              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       10      3      3      4
  ARID1A WILD-TYPE     36     55     61     39
D3V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             10               36
  CLUS_2              3               55
  CLUS_3              3               61
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        9      6      5
  ARID1A WILD-TYPE     42     77     72
D3V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              9               42
  CLUS_2              6               77
  CLUS_3              5               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       48     21     11      3
  ARID1A WILD-TYPE    130    162     90     17
D3V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             48              130
  CLUS_2             21              162
  CLUS_3             11               90
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       17     14     31
  ARID1A WILD-TYPE     70     66     69
D3V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             17               70
  CLUS_2             14               66
  CLUS_3             31               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        9     26     29
  ARID1A WILD-TYPE     80    134    109
D3V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              9               80
  CLUS_2             26              134
  CLUS_3             29              109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       32     23      9
  ARID1A WILD-TYPE    150    110     63
D3V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             32              150
  CLUS_2             23              110
  CLUS_3              9               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       18     26     20     19
  ARID1A WILD-TYPE     94     70     72    167
D3V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             18               94
  CLUS_2             26               70
  CLUS_3             20               72
  CLUS_4             19              167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID1A MUTATED        9     14     24      3     11     11     11
  ARID1A WILD-TYPE     51     36     25     37     52    114     88
D3V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              9               51
  CLUS_2             14               36
  CLUS_3             24               25
  CLUS_4              3               37
  CLUS_5             11               52
  CLUS_6             11              114
  CLUS_7             11               88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       35     17      6     21
  ARID1A WILD-TYPE     95     61     62    175
D3V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             35               95
  CLUS_2             17               61
  CLUS_3              6               62
  CLUS_4             21              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARID1A MUTATED        7     15      8     14     17      9      7      0
  ARID1A WILD-TYPE     33     47     20     66     52     39     36     28
                  vv
clus               CLUS_9
  ARID1A MUTATED        2
  ARID1A WILD-TYPE     72
D3V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              7               33
  CLUS_2             15               47
  CLUS_3              8               20
  CLUS_4             14               66
  CLUS_5             17               52
  CLUS_6              9               39
  CLUS_7              7               36
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       10      2      3      4
  ARID1A WILD-TYPE     23     29     24     15
D3V11, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             10               23
  CLUS_2              2               29
  CLUS_3              3               24
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       11      0      4      4
  ARID1A WILD-TYPE     43     10     20     18
D3V12, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               43
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              4               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = RNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        4      0      0      6
  RNF43 WILD-TYPE     42     58     64     37
D4V1, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        6      1      3
  RNF43 WILD-TYPE     45     82     74
D4V2, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED       43      2      2      0
  RNF43 WILD-TYPE    135    181     99     20
D4V3, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            43             135
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED       11      2     23
  RNF43 WILD-TYPE     76     78     77
D4V4, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             2              78
  CLUS_3            23              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        8     13     21
  RNF43 WILD-TYPE     81    147    117
D4V5, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             8              81
  CLUS_2            13             147
  CLUS_3            21             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED       23     14      5
  RNF43 WILD-TYPE    159    119     67
D4V6, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            23             159
  CLUS_2            14             119
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        1     19     16     11
  RNF43 WILD-TYPE    111     77     76    175
D4V7, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1             111
  CLUS_2            19              77
  CLUS_3            16              76
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF43 MUTATED        1      2     30      3      0      2      9
  RNF43 WILD-TYPE     59     48     19     37     63    123     90
D4V8, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3            30              19
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED       23      8      0     14
  RNF43 WILD-TYPE    107     70     68    182
D4V9, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            23             107
  CLUS_2             8              70
  CLUS_3             0              68
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF43 MUTATED        3     12      2      1     21      1      2      3
  RNF43 WILD-TYPE     37     50     26     79     48     47     41     25
                 vv
clus              CLUS_9
  RNF43 MUTATED        0
  RNF43 WILD-TYPE     74
D4V10, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              37
  CLUS_2            12              50
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5            21              48
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             3              25
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        4      1      0      8
  RNF43 WILD-TYPE     29     30     27     11
D4V11, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             8              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        9      0      4      0
  RNF43 WILD-TYPE     45     10     20     22
D4V12, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             9              45
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = CRIPAK MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED        0      0      0      0
  CRIPAK WILD-TYPE     46     58     64     43
D5V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRIPAK MUTATED        0      0      0
  CRIPAK WILD-TYPE     51     83     77
D5V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED       14      9      4      2
  CRIPAK WILD-TYPE    164    174     97     18
D5V3, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1             14              164
  CLUS_2              9              174
  CLUS_3              4               97
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRIPAK MUTATED       12      4     13
  CRIPAK WILD-TYPE     75     76     87
D5V4, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1             12               75
  CLUS_2              4               76
  CLUS_3             13               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRIPAK MUTATED        7     10      8
  CRIPAK WILD-TYPE     82    150    130
D5V5, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              7               82
  CLUS_2             10              150
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRIPAK MUTATED       15      6      4
  CRIPAK WILD-TYPE    167    127     68
D5V6, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1             15              167
  CLUS_2              6              127
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED        7     11     11      0
  CRIPAK WILD-TYPE    105     85     81    186
D5V7, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              7              105
  CLUS_2             11               85
  CLUS_3             11               81
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CRIPAK MUTATED        3      8      8      3      7      0      0
  CRIPAK WILD-TYPE     57     42     41     37     56    125     99
D5V8, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               57
  CLUS_2              8               42
  CLUS_3              8               41
  CLUS_4              3               37
  CLUS_5              7               56
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED       14      6      6      3
  CRIPAK WILD-TYPE    116     72     62    193
D5V9, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1             14              116
  CLUS_2              6               72
  CLUS_3              6               62
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CRIPAK MUTATED        3      5      2      8      4      2      4      1
  CRIPAK WILD-TYPE     37     57     26     72     65     46     39     27
                  vv
clus               CLUS_9
  CRIPAK MUTATED        0
  CRIPAK WILD-TYPE     74
D5V10, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              8               72
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              4               39
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED        3      4      5      3
  CRIPAK WILD-TYPE     30     27     22     16
D5V11, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               30
  CLUS_2              4               27
  CLUS_3              5               22
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED        5      1      4      5
  CRIPAK WILD-TYPE     49      9     20     17
D5V12, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               49
  CLUS_2              1                9
  CLUS_3              4               20
  CLUS_4              5               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = SOX9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX9 MUTATED        2      1      5      1
  SOX9 WILD-TYPE     44     57     59     42
D6V1, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            5             59
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX9 MUTATED        1      2      6
  SOX9 WILD-TYPE     50     81     71
D6V2, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            6             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX9 MUTATED       30      7      3      1
  SOX9 WILD-TYPE    148    176     98     19
D6V3, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1           30            148
  CLUS_2            7            176
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX9 MUTATED        7      5     19
  SOX9 WILD-TYPE     80     75     81
D6V4, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            5             75
  CLUS_3           19             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX9 MUTATED        6     10     10
  SOX9 WILD-TYPE     83    150    128
D6V5, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            6             83
  CLUS_2           10            150
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX9 MUTATED       11     11      4
  SOX9 WILD-TYPE    171    122     68
D6V6, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1           11            171
  CLUS_2           11            122
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX9 MUTATED        7     18      6     10
  SOX9 WILD-TYPE    105     78     86    176
D6V7, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            7            105
  CLUS_2           18             78
  CLUS_3            6             86
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SOX9 MUTATED        4      9      8      6      2      7      5
  SOX9 WILD-TYPE     56     41     41     34     61    118     94
D6V8, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            9             41
  CLUS_3            8             41
  CLUS_4            6             34
  CLUS_5            2             61
  CLUS_6            7            118
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX9 MUTATED       16      6      3     16
  SOX9 WILD-TYPE    114     72     65    180
D6V9, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1           16            114
  CLUS_2            6             72
  CLUS_3            3             65
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SOX9 MUTATED       10      6      2      2      6      5      5      2      3
  SOX9 WILD-TYPE     30     56     26     78     63     43     38     26     71
D6V10, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1           10             30
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            5             43
  CLUS_7            5             38
  CLUS_8            2             26
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX9 MUTATED        5      2      2      2
  SOX9 WILD-TYPE     28     29     25     17
D6V11, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            2             29
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX9 MUTATED        5      1      3      2
  SOX9 WILD-TYPE     49      9     21     20
D6V12, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1              9
  CLUS_3            3             21
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = FAM123B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123B MUTATED        9      6      2      7
  FAM123B WILD-TYPE     37     52     62     36
D7V1, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               9                37
  CLUS_2               6                52
  CLUS_3               2                62
  CLUS_4               7                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM123B MUTATED        9      7      8
  FAM123B WILD-TYPE     42     76     69
D7V2, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               9                42
  CLUS_2               7                76
  CLUS_3               8                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123B MUTATED       34     16      8      1
  FAM123B WILD-TYPE    144    167     93     19
D7V3, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              34               144
  CLUS_2              16               167
  CLUS_3               8                93
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM123B MUTATED        7      7     22
  FAM123B WILD-TYPE     80     73     78
D7V4, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               7                80
  CLUS_2               7                73
  CLUS_3              22                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM123B MUTATED        8     20     15
  FAM123B WILD-TYPE     81    140    123
D7V5, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               8                81
  CLUS_2              20               140
  CLUS_3              15               123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM123B MUTATED       19     16      8
  FAM123B WILD-TYPE    163    117     64
D7V6, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              19               163
  CLUS_2              16               117
  CLUS_3               8                64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123B MUTATED       10     16     13     21
  FAM123B WILD-TYPE    102     80     79    165
D7V7, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              10               102
  CLUS_2              16                80
  CLUS_3              13                79
  CLUS_4              21               165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM123B MUTATED        6      8      9      5      8      6     18
  FAM123B WILD-TYPE     54     42     40     35     55    119     81
D7V8, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               6                54
  CLUS_2               8                42
  CLUS_3               9                40
  CLUS_4               5                35
  CLUS_5               8                55
  CLUS_6               6               119
  CLUS_7              18                81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123B MUTATED       16      7     10     26
  FAM123B WILD-TYPE    114     71     58    170
D7V9, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              16               114
  CLUS_2               7                71
  CLUS_3              10                58
  CLUS_4              26               170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM123B MUTATED        7      9      5      4     18      2      7      3
  FAM123B WILD-TYPE     33     53     23     76     51     46     36     25
                   vv
clus                CLUS_9
  FAM123B MUTATED        4
  FAM123B WILD-TYPE     70
D7V10, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               7                33
  CLUS_2               9                53
  CLUS_3               5                23
  CLUS_4               4                76
  CLUS_5              18                51
  CLUS_6               2                46
  CLUS_7               7                36
  CLUS_8               3                25
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123B MUTATED        4      3      5      1
  FAM123B WILD-TYPE     29     28     22     18
D7V11, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               4                29
  CLUS_2               3                28
  CLUS_3               5                22
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123B MUTATED        5      2      2      4
  FAM123B WILD-TYPE     49      8     22     18
D7V12, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               5                49
  CLUS_2               2                 8
  CLUS_3               2                22
  CLUS_4               4                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = ZFP36L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        0      0      1      0
  ZFP36L2 WILD-TYPE     46     58     63     43
D8V1, multiclass
[1] "Remove cluster labels:" "ZFP36L2 MUTATED"       
clus
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        0      0      1
  ZFP36L2 WILD-TYPE     51     83     76
D8V2, multiclass
[1] "Remove cluster labels:" "ZFP36L2 MUTATED"       
clus
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED       11      3      3      0
  ZFP36L2 WILD-TYPE    167    180     98     20
D8V3, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               3               180
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        4      3      8
  ZFP36L2 WILD-TYPE     83     77     92
D8V4, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               3                77
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        0      8      7
  ZFP36L2 WILD-TYPE     89    152    131
D8V5, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               8               152
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        7      7      1
  ZFP36L2 WILD-TYPE    175    126     71
D8V6, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               7               126
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        5      3      7      2
  ZFP36L2 WILD-TYPE    107     93     85    184
D8V7, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5               107
  CLUS_2               3                93
  CLUS_3               7                85
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFP36L2 MUTATED        6      0      8      0      1      2      0
  ZFP36L2 WILD-TYPE     54     50     41     40     62    123     99
D8V8, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               6                54
  CLUS_2               0                50
  CLUS_3               8                41
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        9      2      1      5
  ZFP36L2 WILD-TYPE    121     76     67    191
D8V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZFP36L2 MUTATED        0      2      1      5      6      1      1      0
  ZFP36L2 WILD-TYPE     40     60     27     75     63     47     42     28
                   vv
clus                CLUS_9
  ZFP36L2 MUTATED        1
  ZFP36L2 WILD-TYPE     73
D8V10, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               5                75
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        1      0      1      4
  ZFP36L2 WILD-TYPE     32     31     26     15
D8V11, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        2      0      3      1
  ZFP36L2 WILD-TYPE     52     10     21     21
D8V12, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = B2M MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        2      0      0      2
  B2M WILD-TYPE     44     58     64     41
D9V1, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        2      1      1
  B2M WILD-TYPE     49     82     76
D9V2, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED       15      2      0      0
  B2M WILD-TYPE    163    181    101     20
D9V3, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1          15           163
  CLUS_2           2           181
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        5      0      9
  B2M WILD-TYPE     82     80     91
D9V4, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           5            82
  CLUS_2           0            80
  CLUS_3           9            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        0      6      9
  B2M WILD-TYPE     89    154    129
D9V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            89
  CLUS_2           6           154
  CLUS_3           9           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        8      6      1
  B2M WILD-TYPE    174    127     71
D9V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           8           174
  CLUS_2           6           127
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        1      4      7      5
  B2M WILD-TYPE    111     92     85    181
D9V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1           111
  CLUS_2           4            92
  CLUS_3           7            85
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B2M MUTATED        1      2      7      0      1      0      6
  B2M WILD-TYPE     59     48     42     40     62    125     93
D9V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           7            42
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           6            93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        4      4      0      9
  B2M WILD-TYPE    126     74     68    187
D9V9, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4           126
  CLUS_2           4            74
  CLUS_3           0            68
  CLUS_4           9           187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  B2M MUTATED        0      4      2      4      5      0      1      0      1
  B2M WILD-TYPE     40     58     26     76     64     48     42     28     73
D9V10, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            40
  CLUS_2           4            58
  CLUS_3           2            26
  CLUS_4           4            76
  CLUS_5           5            64
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        0      0      1      4
  B2M WILD-TYPE     33     31     26     15
D9V11, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           1            26
  CLUS_4           4            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        3      0      2      0
  B2M WILD-TYPE     51     10     22     22
D9V12, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = TXNDC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC2 MUTATED        2      0      0      0
  TXNDC2 WILD-TYPE     44     58     64     43
D10V1, multiclass
[1] "Remove cluster labels:" "TXNDC2 MUTATED"        
clus
  TXNDC2 MUTATED TXNDC2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AY-4071 
"TXNDC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC2 MUTATED        2      0      0
  TXNDC2 WILD-TYPE     49     83     77
D10V2, multiclass
[1] "Remove cluster labels:" "TXNDC2 MUTATED"        
clus
  TXNDC2 MUTATED TXNDC2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" "TXNDC2 WILD-TYPE" 
      TCGA-AY-4071 
"TXNDC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC2 MUTATED       11      9      3      1
  TXNDC2 WILD-TYPE    167    174     98     19
D10V3, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              9              174
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC2 MUTATED        5      9      8
  TXNDC2 WILD-TYPE     82     71     92
D10V4, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              9               71
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC2 MUTATED        3      5     11
  TXNDC2 WILD-TYPE     86    155    127
D10V5, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC2 MUTATED       10      6      3
  TXNDC2 WILD-TYPE    172    127     69
D10V6, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC2 MUTATED       10      5      7      2
  TXNDC2 WILD-TYPE    102     91     85    184
D10V7, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1             10              102
  CLUS_2              5               91
  CLUS_3              7               85
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNDC2 MUTATED        4      5      1      4      8      0      2
  TXNDC2 WILD-TYPE     56     45     48     36     55    125     97
D10V8, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              5               45
  CLUS_3              1               48
  CLUS_4              4               36
  CLUS_5              8               55
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC2 MUTATED       14      5      2      3
  TXNDC2 WILD-TYPE    116     73     66    193
D10V9, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXNDC2 MUTATED        7      3      3      3      1      3      3      1
  TXNDC2 WILD-TYPE     33     59     25     77     68     45     40     27
                  vv
clus               CLUS_9
  TXNDC2 MUTATED        0
  TXNDC2 WILD-TYPE     74
D10V10, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1              7               33
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              1               68
  CLUS_6              3               45
  CLUS_7              3               40
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC2 MUTATED        1      3      0      3
  TXNDC2 WILD-TYPE     32     28     27     16
D10V11, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               28
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC2 MUTATED        6      0      0      1
  TXNDC2 WILD-TYPE     48     10     24     21
D10V12, multiclass
        clus
vv       TXNDC2 MUTATED TXNDC2 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = ACVR1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        4      2      2      4
  ACVR1B WILD-TYPE     42     56     62     39
D11V1, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              4               42
  CLUS_2              2               56
  CLUS_3              2               62
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        6      4      2
  ACVR1B WILD-TYPE     45     79     75
D11V2, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              6               45
  CLUS_2              4               79
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED       20      4      2      2
  ACVR1B WILD-TYPE    158    179     99     18
D11V3, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             20              158
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        7      4      3
  ACVR1B WILD-TYPE     80     76     97
D11V4, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              7               80
  CLUS_2              4               76
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        3      9     12
  ACVR1B WILD-TYPE     86    151    126
D11V5, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               86
  CLUS_2              9              151
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED       13      9      2
  ACVR1B WILD-TYPE    169    124     70
D11V6, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             13              169
  CLUS_2              9              124
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        4      4      7     13
  ACVR1B WILD-TYPE    108     92     85    173
D11V7, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              4              108
  CLUS_2              4               92
  CLUS_3              7               85
  CLUS_4             13              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACVR1B MUTATED        4      2      5      1      1      4     11
  ACVR1B WILD-TYPE     56     48     44     39     62    121     88
D11V8, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              4              121
  CLUS_7             11               88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        6      8      2     12
  ACVR1B WILD-TYPE    124     70     66    184
D11V9, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              6              124
  CLUS_2              8               70
  CLUS_3              2               66
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACVR1B MUTATED        2      6      1      1      7      4      2      3
  ACVR1B WILD-TYPE     38     56     27     79     62     44     41     25
                  vv
clus               CLUS_9
  ACVR1B MUTATED        2
  ACVR1B WILD-TYPE     72
D11V10, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              4               44
  CLUS_7              2               41
  CLUS_8              3               25
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        1      0      0      4
  ACVR1B WILD-TYPE     32     31     27     15
D11V11, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        5      0      0      0
  ACVR1B WILD-TYPE     49     10     24     22
D11V12, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = CDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        1      0      0      4
  CDH1 WILD-TYPE     45     58     64     39
D12V1, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        3      0      2
  CDH1 WILD-TYPE     48     83     75
D12V2, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED       42     24     15      4
  CDH1 WILD-TYPE    136    159     86     16
D12V3, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           42            136
  CLUS_2           24            159
  CLUS_3           15             86
  CLUS_4            4             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       28     20     32
  CDH1 WILD-TYPE     59     60     68
D12V4, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           28             59
  CLUS_2           20             60
  CLUS_3           32             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       13     27     34
  CDH1 WILD-TYPE     76    133    104
D12V5, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           13             76
  CLUS_2           27            133
  CLUS_3           34            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       41     21     12
  CDH1 WILD-TYPE    141    112     60
D12V6, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           41            141
  CLUS_2           21            112
  CLUS_3           12             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED       26     32     21      7
  CDH1 WILD-TYPE     86     64     71    179
D12V7, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           26             86
  CLUS_2           32             64
  CLUS_3           21             71
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH1 MUTATED       17     17     18     12     15      1      6
  CDH1 WILD-TYPE     43     33     31     28     48    124     93
D12V8, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           17             43
  CLUS_2           17             33
  CLUS_3           18             31
  CLUS_4           12             28
  CLUS_5           15             48
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED       51     14     11      9
  CDH1 WILD-TYPE     79     64     57    187
D12V9, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           51             79
  CLUS_2           14             64
  CLUS_3           11             57
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CDH1 MUTATED       17     13      6     15     11      9     13      1      0
  CDH1 WILD-TYPE     23     49     22     65     58     39     30     27     74
D12V10, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           17             23
  CLUS_2           13             49
  CLUS_3            6             22
  CLUS_4           15             65
  CLUS_5           11             58
  CLUS_6            9             39
  CLUS_7           13             30
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        7      6      6      7
  CDH1 WILD-TYPE     26     25     21     12
D12V11, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            7             26
  CLUS_2            6             25
  CLUS_3            6             21
  CLUS_4            7             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED       12      0      9      5
  CDH1 WILD-TYPE     42     10     15     17
D12V12, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           12             42
  CLUS_2            0             10
  CLUS_3            9             15
  CLUS_4            5             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = MLH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        2      1      0      2
  MLH1 WILD-TYPE     44     57     64     41
D13V1, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED        3      1      1
  MLH1 WILD-TYPE     48     82     76
D13V2, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED       31     17      8      3
  MLH1 WILD-TYPE    147    166     93     17
D13V3, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           31            147
  CLUS_2           17            166
  CLUS_3            8             93
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED       18     11     25
  MLH1 WILD-TYPE     69     69     75
D13V4, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           18             69
  CLUS_2           11             69
  CLUS_3           25             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED       10     24     21
  MLH1 WILD-TYPE     79    136    117
D13V5, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           10             79
  CLUS_2           24            136
  CLUS_3           21            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED       28     19      8
  MLH1 WILD-TYPE    154    114     64
D13V6, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           28            154
  CLUS_2           19            114
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED       15     21     17      6
  MLH1 WILD-TYPE     97     75     75    180
D13V7, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           15             97
  CLUS_2           21             75
  CLUS_3           17             75
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLH1 MUTATED        8     14     13      5     11      3      5
  MLH1 WILD-TYPE     52     36     36     35     52    122     94
D13V8, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            8             52
  CLUS_2           14             36
  CLUS_3           13             36
  CLUS_4            5             35
  CLUS_5           11             52
  CLUS_6            3            122
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED       30     15      3     11
  MLH1 WILD-TYPE    100     63     65    185
D13V9, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           30            100
  CLUS_2           15             63
  CLUS_3            3             65
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MLH1 MUTATED       11     15      4      5     10      5      7      2      0
  MLH1 WILD-TYPE     29     47     24     75     59     43     36     26     74
D13V10, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           11             29
  CLUS_2           15             47
  CLUS_3            4             24
  CLUS_4            5             75
  CLUS_5           10             59
  CLUS_6            5             43
  CLUS_7            7             36
  CLUS_8            2             26
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        6      6      1      5
  MLH1 WILD-TYPE     27     25     26     14
D13V11, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            6             27
  CLUS_2            6             25
  CLUS_3            1             26
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED       14      1      2      1
  MLH1 WILD-TYPE     40      9     22     21
D13V12, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1           14             40
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = BCOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        4      0      1      3
  BCOR WILD-TYPE     42     58     63     40
D14V1, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        4      2      2
  BCOR WILD-TYPE     47     81     75
D14V2, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED       20      2      6      2
  BCOR WILD-TYPE    158    181     95     18
D14V3, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           20            158
  CLUS_2            2            181
  CLUS_3            6             95
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        9      2     11
  BCOR WILD-TYPE     78     78     89
D14V4, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            9             78
  CLUS_2            2             78
  CLUS_3           11             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        5      8     13
  BCOR WILD-TYPE     84    152    125
D14V5, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            5             84
  CLUS_2            8            152
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED       14      8      4
  BCOR WILD-TYPE    168    125     68
D14V6, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           14            168
  CLUS_2            8            125
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        2      7     12      9
  BCOR WILD-TYPE    110     89     80    177
D14V7, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            2            110
  CLUS_2            7             89
  CLUS_3           12             80
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCOR MUTATED        3      4     10      0      4      2      7
  BCOR WILD-TYPE     57     46     39     40     59    123     92
D14V8, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3           10             39
  CLUS_4            0             40
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED       12      6      1     11
  BCOR WILD-TYPE    118     72     67    185
D14V9, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           12            118
  CLUS_2            6             72
  CLUS_3            1             67
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BCOR MUTATED        1      6      4      5      8      2      2      1      1
  BCOR WILD-TYPE     39     56     24     75     61     46     41     27     73
D14V10, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             39
  CLUS_2            6             56
  CLUS_3            4             24
  CLUS_4            5             75
  CLUS_5            8             61
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        1      2      0      3
  BCOR WILD-TYPE     32     29     27     16
D14V11, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        4      0      2      0
  BCOR WILD-TYPE     50     10     22     22
D14V12, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = SMAD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        4      2      1      5
  SMAD2 WILD-TYPE     42     56     63     38
D15V1, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        5      3      4
  SMAD2 WILD-TYPE     46     80     73
D15V2, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             3              80
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED       12      3      4      3
  SMAD2 WILD-TYPE    166    180     97     17
D15V3, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             4              97
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        4      1      4
  SMAD2 WILD-TYPE     83     79     96
D15V4, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        2      6      8
  SMAD2 WILD-TYPE     87    154    130
D15V5, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        7      7      2
  SMAD2 WILD-TYPE    175    126     70
D15V6, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        0      5      3     14
  SMAD2 WILD-TYPE    112     91     89    172
D15V7, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4            14             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD2 MUTATED        1      1      1      2      3      4     10
  SMAD2 WILD-TYPE     59     49     48     38     60    121     89
D15V8, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             4             121
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        4      1      1     15
  SMAD2 WILD-TYPE    126     77     67    181
D15V9, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4            15             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMAD2 MUTATED        0      2      1      2      5      2      2      2
  SMAD2 WILD-TYPE     40     60     27     78     64     46     41     26
                 vv
clus              CLUS_9
  SMAD2 MUTATED        5
  SMAD2 WILD-TYPE     69
D15V10, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             5              69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        0      2      1      0
  SMAD2 WILD-TYPE     33     29     26     19
D15V11, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        2      0      1      0
  SMAD2 WILD-TYPE     52     10     23     22
D15V12, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = WNT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        0      0      0      0
  WNT1 WILD-TYPE     46     58     64     43
D16V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        0      0      0
  WNT1 WILD-TYPE     51     83     77
D16V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        7      0      0      0
  WNT1 WILD-TYPE    171    183    101     20
D16V3, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        1      0      5
  WNT1 WILD-TYPE     86     80     95
D16V4, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        1      2      4
  WNT1 WILD-TYPE     88    158    134
D16V5, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        4      3      0
  WNT1 WILD-TYPE    178    130     72
D16V6, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        0      5      1      1
  WNT1 WILD-TYPE    112     91     91    185
D16V7, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WNT1 MUTATED        0      0      6      0      0      0      1
  WNT1 WILD-TYPE     60     50     43     40     63    125     98
D16V8, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        6      0      0      1
  WNT1 WILD-TYPE    124     78     68    195
D16V9, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WNT1 MUTATED        0      1      0      0      5      0      1      0      0
  WNT1 WILD-TYPE     40     61     28     80     64     48     42     28     74
D16V10, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        0      0      0      3
  WNT1 WILD-TYPE     33     31     27     16
D16V11, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        1      0      2      0
  WNT1 WILD-TYPE     53     10     22     22
D16V12, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = FMN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN2 MUTATED        1      2      2      3
  FMN2 WILD-TYPE     45     56     62     40
D17V1, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            2             56
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMN2 MUTATED        2      4      2
  FMN2 WILD-TYPE     49     79     75
D17V2, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            4             79
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN2 MUTATED       34     18      9      1
  FMN2 WILD-TYPE    144    165     92     19
D17V3, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           34            144
  CLUS_2           18            165
  CLUS_3            9             92
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMN2 MUTATED       15     16     25
  FMN2 WILD-TYPE     72     64     75
D17V4, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           15             72
  CLUS_2           16             64
  CLUS_3           25             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMN2 MUTATED        2     25     28
  FMN2 WILD-TYPE     87    135    110
D17V5, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2           25            135
  CLUS_3           28            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMN2 MUTATED       30     19      6
  FMN2 WILD-TYPE    152    114     66
D17V6, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           30            152
  CLUS_2           19            114
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN2 MUTATED       19     23     16      5
  FMN2 WILD-TYPE     93     73     76    181
D17V7, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           19             93
  CLUS_2           23             73
  CLUS_3           16             76
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FMN2 MUTATED       13      7     18      6     10      4      5
  FMN2 WILD-TYPE     47     43     31     34     53    121     94
D17V8, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           13             47
  CLUS_2            7             43
  CLUS_3           18             31
  CLUS_4            6             34
  CLUS_5           10             53
  CLUS_6            4            121
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN2 MUTATED       30     13     10      9
  FMN2 WILD-TYPE    100     65     58    187
D17V9, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           30            100
  CLUS_2           13             65
  CLUS_3           10             58
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FMN2 MUTATED        7     12      5      5     10      5     13      3      2
  FMN2 WILD-TYPE     33     50     23     75     59     43     30     25     72
D17V10, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1            7             33
  CLUS_2           12             50
  CLUS_3            5             23
  CLUS_4            5             75
  CLUS_5           10             59
  CLUS_6            5             43
  CLUS_7           13             30
  CLUS_8            3             25
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN2 MUTATED        6      5      4      8
  FMN2 WILD-TYPE     27     26     23     11
D17V11, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1            6             27
  CLUS_2            5             26
  CLUS_3            4             23
  CLUS_4            8             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN2 MUTATED       13      0      3      7
  FMN2 WILD-TYPE     41     10     21     15
D17V12, multiclass
        clus
vv       FMN2 MUTATED FMN2 WILD-TYPE
  CLUS_1           13             41
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            7             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = GGT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGT1 MUTATED        0      0      0      0
  GGT1 WILD-TYPE     46     58     64     43
D18V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGT1 MUTATED        0      0      0
  GGT1 WILD-TYPE     51     83     77
D18V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGT1 MUTATED        1      7      2      0
  GGT1 WILD-TYPE    177    176     99     20
D18V3, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            1            177
  CLUS_2            7            176
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGT1 MUTATED        0      8      2
  GGT1 WILD-TYPE     87     72     98
D18V4, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            8             72
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGT1 MUTATED        2      3      5
  GGT1 WILD-TYPE     87    157    133
D18V5, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGT1 MUTATED        6      3      1
  GGT1 WILD-TYPE    176    130     71
D18V6, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGT1 MUTATED        7      1      2      0
  GGT1 WILD-TYPE    105     95     90    186
D18V7, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            7            105
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GGT1 MUTATED        4      1      0      0      5      0      0
  GGT1 WILD-TYPE     56     49     49     40     58    125     99
D18V8, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            5             58
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGT1 MUTATED        4      2      4      0
  GGT1 WILD-TYPE    126     76     64    196
D18V9, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            4             64
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GGT1 MUTATED        2      3      0      3      0      1      1      0      0
  GGT1 WILD-TYPE     38     59     28     77     69     47     42     28     74
D18V10, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            0             69
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGT1 MUTATED        0      1      4      0
  GGT1 WILD-TYPE     33     30     23     19
D18V11, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            4             23
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGT1 MUTATED        1      2      2      0
  GGT1 WILD-TYPE     53      8     22     22
D18V12, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            2              8
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = STARD3NL MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3NL MUTATED        0      0      0      1
  STARD3NL WILD-TYPE     46     58     64     42
D19V1, multiclass
[1] "Remove cluster labels:" "STARD3NL MUTATED"      
clus
  STARD3NL MUTATED STARD3NL WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A017         TCGA-AA-A01D 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  STARD3NL MUTATED        0      1      0
  STARD3NL WILD-TYPE     51     82     77
D19V2, multiclass
[1] "Remove cluster labels:" "STARD3NL MUTATED"      
clus
  STARD3NL MUTATED STARD3NL WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A017         TCGA-AA-A01D 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" "STARD3NL WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3NL MUTATED       12      2      1      0
  STARD3NL WILD-TYPE    166    181    100     20
D19V3, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1               12                166
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  STARD3NL MUTATED        4      2      7
  STARD3NL WILD-TYPE     83     78     93
D19V4, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                2                 78
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  STARD3NL MUTATED        2      5      5
  STARD3NL WILD-TYPE     87    155    133
D19V5, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                5                155
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  STARD3NL MUTATED        8      4      0
  STARD3NL WILD-TYPE    174    129     72
D19V6, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                8                174
  CLUS_2                4                129
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3NL MUTATED        1      8      4      2
  STARD3NL WILD-TYPE    111     88     88    184
D19V7, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                1                111
  CLUS_2                8                 88
  CLUS_3                4                 88
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STARD3NL MUTATED        3      3      4      2      1      0      2
  STARD3NL WILD-TYPE     57     47     45     38     62    125     97
D19V8, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                3                 47
  CLUS_3                4                 45
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3NL MUTATED       10      2      0      3
  STARD3NL WILD-TYPE    120     76     68    193
D19V9, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1               10                120
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STARD3NL MUTATED        3      3      1      4      3      1      0      0
  STARD3NL WILD-TYPE     37     59     27     76     66     47     43     28
                    vv
clus                 CLUS_9
  STARD3NL MUTATED        0
  STARD3NL WILD-TYPE     74
D19V10, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                4                 76
  CLUS_5                3                 66
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3NL MUTATED        1      2      1      1
  STARD3NL WILD-TYPE     32     29     26     18
D19V11, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 29
  CLUS_3                1                 26
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STARD3NL MUTATED        4      0      1      0
  STARD3NL WILD-TYPE     50     10     23     22
D19V12, multiclass
        clus
vv       STARD3NL MUTATED STARD3NL WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = SELPLG MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELPLG MUTATED        0      0      0      2
  SELPLG WILD-TYPE     46     58     64     41
D20V1, multiclass
[1] "Remove cluster labels:" "SELPLG MUTATED"        
clus
  SELPLG MUTATED SELPLG WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3866 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AY-4071 
"SELPLG WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SELPLG MUTATED        1      0      1
  SELPLG WILD-TYPE     50     83     76
D20V2, multiclass
[1] "Remove cluster labels:" "SELPLG MUTATED"        
clus
  SELPLG MUTATED SELPLG WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3866 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" "SELPLG WILD-TYPE" 
      TCGA-AY-4071 
"SELPLG WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELPLG MUTATED        8      8      2      1
  SELPLG WILD-TYPE    170    175     99     19
D20V3, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              8              170
  CLUS_2              8              175
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SELPLG MUTATED        8      6      3
  SELPLG WILD-TYPE     79     74     97
D20V4, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              8               79
  CLUS_2              6               74
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SELPLG MUTATED        2      7     10
  SELPLG WILD-TYPE     87    153    128
D20V5, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SELPLG MUTATED       10      7      2
  SELPLG WILD-TYPE    172    126     70
D20V6, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1             10              172
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELPLG MUTATED        7      2      7      3
  SELPLG WILD-TYPE    105     94     85    183
D20V7, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              7              105
  CLUS_2              2               94
  CLUS_3              7               85
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SELPLG MUTATED       11      1      2      2      1      1      1
  SELPLG WILD-TYPE     49     49     47     38     62    124     98
D20V8, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1             11               49
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELPLG MUTATED       11      1      2      5
  SELPLG WILD-TYPE    119     77     66    191
D20V9, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1             11              119
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SELPLG MUTATED        2      3      1      3      3      3      3      0
  SELPLG WILD-TYPE     38     59     27     77     66     45     40     28
                  vv
clus               CLUS_9
  SELPLG MUTATED        1
  SELPLG WILD-TYPE     73
D20V10, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              3               45
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELPLG MUTATED        3      0      0      3
  SELPLG WILD-TYPE     30     31     27     16
D20V11, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SELPLG MUTATED        3      0      1      2
  SELPLG WILD-TYPE     51     10     23     20
D20V12, multiclass
        clus
vv       SELPLG MUTATED SELPLG WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = OR4D10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D10 MUTATED        0      0      0      3
  OR4D10 WILD-TYPE     46     58     64     40
D21V1, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4D10 MUTATED        2      0      1
  OR4D10 WILD-TYPE     49     83     76
D21V2, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D10 MUTATED        9      5      2      0
  OR4D10 WILD-TYPE    169    178     99     20
D21V3, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              5              178
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4D10 MUTATED        7      2      4
  OR4D10 WILD-TYPE     80     78     96
D21V4, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4D10 MUTATED        1      5      9
  OR4D10 WILD-TYPE     88    155    129
D21V5, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4D10 MUTATED        8      5      2
  OR4D10 WILD-TYPE    174    128     70
D21V6, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D10 MUTATED        3      2      7      4
  OR4D10 WILD-TYPE    109     94     85    182
D21V7, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              7               85
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4D10 MUTATED        4      4      2      0      3      1      2
  OR4D10 WILD-TYPE     56     46     47     40     60    124     97
D21V8, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              4               46
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D10 MUTATED        4      5      2      4
  OR4D10 WILD-TYPE    126     73     66    192
D21V9, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4D10 MUTATED        2      5      0      1      2      1      3      0
  OR4D10 WILD-TYPE     38     57     28     79     67     47     40     28
                  vv
clus               CLUS_9
  OR4D10 MUTATED        1
  OR4D10 WILD-TYPE     73
D21V10, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D10 MUTATED        1      1      1      2
  OR4D10 WILD-TYPE     32     30     26     17
D21V11, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D10 MUTATED        4      0      0      1
  OR4D10 WILD-TYPE     50     10     24     21
D21V12, multiclass
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = NF2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        2      0      1      1
  NF2 WILD-TYPE     44     58     63     42
D22V1, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        2      1      1
  NF2 WILD-TYPE     49     82     76
D22V2, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED       35     18     13      1
  NF2 WILD-TYPE    143    165     88     19
D22V3, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          35           143
  CLUS_2          18           165
  CLUS_3          13            88
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED       24     13     25
  NF2 WILD-TYPE     63     67     75
D22V4, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          24            63
  CLUS_2          13            67
  CLUS_3          25            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED        7     17     34
  NF2 WILD-TYPE     82    143    104
D22V5, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           7            82
  CLUS_2          17           143
  CLUS_3          34           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF2 MUTATED       33     18      7
  NF2 WILD-TYPE    149    115     65
D22V6, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          33           149
  CLUS_2          18           115
  CLUS_3           7            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED       18     23     20      6
  NF2 WILD-TYPE     94     73     72    180
D22V7, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          18            94
  CLUS_2          23            73
  CLUS_3          20            72
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF2 MUTATED       13     12     18      5     14      2      3
  NF2 WILD-TYPE     47     38     31     35     49    123     96
D22V8, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          13            47
  CLUS_2          12            38
  CLUS_3          18            31
  CLUS_4           5            35
  CLUS_5          14            49
  CLUS_6           2           123
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED       41     12      4     10
  NF2 WILD-TYPE     89     66     64    186
D22V9, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          41            89
  CLUS_2          12            66
  CLUS_3           4            64
  CLUS_4          10           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NF2 MUTATED       14     13      4     12     15      3      4      0      2
  NF2 WILD-TYPE     26     49     24     68     54     45     39     28     72
D22V10, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          14            26
  CLUS_2          13            49
  CLUS_3           4            24
  CLUS_4          12            68
  CLUS_5          15            54
  CLUS_6           3            45
  CLUS_7           4            39
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED        6      5      1      5
  NF2 WILD-TYPE     27     26     26     14
D22V11, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           6            27
  CLUS_2           5            26
  CLUS_3           1            26
  CLUS_4           5            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF2 MUTATED       12      1      3      1
  NF2 WILD-TYPE     42      9     21     21
D22V12, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1          12            42
  CLUS_2           1             9
  CLUS_3           3            21
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = MAPK6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK6 MUTATED        2      0      0      1
  MAPK6 WILD-TYPE     44     58     64     42
D23V1, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK6 MUTATED        2      0      1
  MAPK6 WILD-TYPE     49     83     76
D23V2, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK6 MUTATED       12      3      3      1
  MAPK6 WILD-TYPE    166    180     98     19
D23V3, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK6 MUTATED        7      2      7
  MAPK6 WILD-TYPE     80     78     93
D23V4, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK6 MUTATED        1      5      9
  MAPK6 WILD-TYPE     88    155    129
D23V5, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK6 MUTATED        8      6      1
  MAPK6 WILD-TYPE    174    127     71
D23V6, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK6 MUTATED        4      6      4      5
  MAPK6 WILD-TYPE    108     90     88    181
D23V7, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK6 MUTATED        2      0      5      4      4      1      3
  MAPK6 WILD-TYPE     58     50     44     36     59    124     96
D23V8, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             4              36
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK6 MUTATED        9      4      1      5
  MAPK6 WILD-TYPE    121     74     67    191
D23V9, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAPK6 MUTATED        4      4      0      1      5      0      3      1
  MAPK6 WILD-TYPE     36     58     28     79     64     48     40     27
                 vv
clus              CLUS_9
  MAPK6 MUTATED        1
  MAPK6 WILD-TYPE     73
D23V10, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK6 MUTATED        2      1      1      2
  MAPK6 WILD-TYPE     31     30     26     17
D23V11, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK6 MUTATED        3      1      1      1
  MAPK6 WILD-TYPE     51      9     23     21
D23V12, multiclass
        clus
vv       MAPK6 MUTATED MAPK6 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        1      1      0      1
  RHOA WILD-TYPE     45     57     64     42
D24V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        1      0      2
  RHOA WILD-TYPE     50     83     75
D24V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        9      2      2      0
  RHOA WILD-TYPE    169    181     99     20
D24V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3      1      4
  RHOA WILD-TYPE     84     79     96
D24V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        2      4      3
  RHOA WILD-TYPE     87    156    135
D24V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      4      1
  RHOA WILD-TYPE    178    129     71
D24V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        3      2      4      4
  RHOA WILD-TYPE    109     94     88    182
D24V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHOA MUTATED        4      0      3      1      1      1      3
  RHOA WILD-TYPE     56     50     46     39     62    124     96
D24V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4             56
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        5      2      1      5
  RHOA WILD-TYPE    125     76     67    191
D24V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RHOA MUTATED        1      3      1      2      3      0      1      1      1
  RHOA WILD-TYPE     39     59     27     78     66     48     42     27     73
D24V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        1      0      1      2
  RHOA WILD-TYPE     32     31     26     17
D24V11, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        2      0      2      0
  RHOA WILD-TYPE     52     10     22     22
D24V12, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = FAM9A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        2      0      0      0
  FAM9A WILD-TYPE     44     58     64     43
D25V1, multiclass
[1] "Remove cluster labels:" "FAM9A MUTATED"         
clus
  FAM9A MUTATED FAM9A WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AY-4071 
"FAM9A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAM9A MUTATED        1      1      0
  FAM9A WILD-TYPE     50     82     77
D25V2, multiclass
[1] "Remove cluster labels:" "FAM9A MUTATED"         
clus
  FAM9A MUTATED FAM9A WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" "FAM9A WILD-TYPE" 
     TCGA-AY-4071 
"FAM9A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED       10      1      0      0
  FAM9A WILD-TYPE    168    182    101     20
D25V3, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAM9A MUTATED        3      1      5
  FAM9A WILD-TYPE     84     79     95
D25V4, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAM9A MUTATED        1      3      5
  FAM9A WILD-TYPE     88    157    133
D25V5, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAM9A MUTATED        5      4      0
  FAM9A WILD-TYPE    177    129     72
D25V6, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        2      4      4      2
  FAM9A WILD-TYPE    110     92     88    184
D25V7, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM9A MUTATED        1      1      7      0      1      1      1
  FAM9A WILD-TYPE     59     49     42     40     62    124     98
D25V8, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        4      4      0      4
  FAM9A WILD-TYPE    126     74     68    192
D25V9, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM9A MUTATED        0      3      0      4      5      0      0      0
  FAM9A WILD-TYPE     40     59     28     76     64     48     43     28
                 vv
clus              CLUS_9
  FAM9A MUTATED        0
  FAM9A WILD-TYPE     74
D25V10, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        3      0      0      3
  FAM9A WILD-TYPE     30     31     27     16
D25V11, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        5      0      1      0
  FAM9A WILD-TYPE     49     10     23     22
D25V12, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = EGR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        1      0      0      1
  EGR1 WILD-TYPE     45     58     64     42
D26V1, multiclass
[1] "Remove cluster labels:" "EGR1 MUTATED"          
clus
  EGR1 MUTATED EGR1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3930     TCGA-AA-3939 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AY-4071 
"EGR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        2      0      0
  EGR1 WILD-TYPE     49     83     77
D26V2, multiclass
[1] "Remove cluster labels:" "EGR1 MUTATED"          
clus
  EGR1 MUTATED EGR1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3930     TCGA-AA-3939 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-AY-4071 
"EGR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED       10      1      1      0
  EGR1 WILD-TYPE    168    182    100     20
D26V3, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        1      1      8
  EGR1 WILD-TYPE     86     79     92
D26V4, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        0      4      4
  EGR1 WILD-TYPE     89    156    134
D26V5, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        3      4      1
  EGR1 WILD-TYPE    179    129     71
D26V6, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        1      8      1      2
  EGR1 WILD-TYPE    111     88     91    184
D26V7, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            8             88
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EGR1 MUTATED        0      2      6      1      0      0      3
  EGR1 WILD-TYPE     60     48     43     39     63    125     96
D26V8, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        5      1      2      4
  EGR1 WILD-TYPE    125     77     66    192
D26V9, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EGR1 MUTATED        1      0      0      2      5      0      2      2      0
  EGR1 WILD-TYPE     39     62     28     78     64     48     41     26     74
D26V10, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            2             26
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        0      0      1      2
  EGR1 WILD-TYPE     33     31     26     17
D26V11, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        1      0      2      0
  EGR1 WILD-TYPE     53     10     22     22
D26V12, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = PRKDC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED        6      1      1      4
  PRKDC WILD-TYPE     40     57     63     39
D27V1, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             6              40
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKDC MUTATED        7      3      2
  PRKDC WILD-TYPE     44     80     75
D27V2, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             7              44
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED       39     15     14      2
  PRKDC WILD-TYPE    139    168     87     18
D27V3, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            39             139
  CLUS_2            15             168
  CLUS_3            14              87
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKDC MUTATED       21     14     23
  PRKDC WILD-TYPE     66     66     77
D27V4, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            21              66
  CLUS_2            14              66
  CLUS_3            23              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKDC MUTATED       10     22     27
  PRKDC WILD-TYPE     79    138    111
D27V5, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            10              79
  CLUS_2            22             138
  CLUS_3            27             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKDC MUTATED       31     20      8
  PRKDC WILD-TYPE    151    113     64
D27V6, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            31             151
  CLUS_2            20             113
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED       17     23     17     13
  PRKDC WILD-TYPE     95     73     75    173
D27V7, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            17              95
  CLUS_2            23              73
  CLUS_3            17              75
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKDC MUTATED       14     10     21      4      8      3     10
  PRKDC WILD-TYPE     46     40     28     36     55    122     89
D27V8, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            14              46
  CLUS_2            10              40
  CLUS_3            21              28
  CLUS_4             4              36
  CLUS_5             8              55
  CLUS_6             3             122
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED       32     13      5     18
  PRKDC WILD-TYPE     98     65     63    178
D27V9, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            32              98
  CLUS_2            13              65
  CLUS_3             5              63
  CLUS_4            18             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKDC MUTATED       10     13      6      9     13      3      9      2
  PRKDC WILD-TYPE     30     49     22     71     56     45     34     26
                 vv
clus              CLUS_9
  PRKDC MUTATED        3
  PRKDC WILD-TYPE     71
D27V10, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            10              30
  CLUS_2            13              49
  CLUS_3             6              22
  CLUS_4             9              71
  CLUS_5            13              56
  CLUS_6             3              45
  CLUS_7             9              34
  CLUS_8             2              26
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED        7      3      4      6
  PRKDC WILD-TYPE     26     28     23     13
D27V11, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1             7              26
  CLUS_2             3              28
  CLUS_3             4              23
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKDC MUTATED       12      2      5      1
  PRKDC WILD-TYPE     42      8     19     21
D27V12, multiclass
        clus
vv       PRKDC MUTATED PRKDC WILD-TYPE
  CLUS_1            12              42
  CLUS_2             2               8
  CLUS_3             5              19
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = RPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        0      0      0      0
  RPTN WILD-TYPE     46     58     64     43
D28V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        0      0      0
  RPTN WILD-TYPE     51     83     77
D28V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        8      4      4      1
  RPTN WILD-TYPE    170    179     97     19
D28V3, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            8            170
  CLUS_2            4            179
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        6      4      8
  RPTN WILD-TYPE     81     76     92
D28V4, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            6             81
  CLUS_2            4             76
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        3      7      6
  RPTN WILD-TYPE     86    153    132
D28V5, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        9      4      3
  RPTN WILD-TYPE    173    129     69
D28V6, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            9            173
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        5      5      8      0
  RPTN WILD-TYPE    107     91     84    186
D28V7, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            5            107
  CLUS_2            5             91
  CLUS_3            8             84
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPTN MUTATED        5      1      4      2      6      0      0
  RPTN WILD-TYPE     55     49     45     38     57    125     99
D28V8, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            5             55
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            6             57
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        9      8      1      0
  RPTN WILD-TYPE    121     70     67    196
D28V9, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            9            121
  CLUS_2            8             70
  CLUS_3            1             67
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RPTN MUTATED        3      6      0      2      2      3      1      1      0
  RPTN WILD-TYPE     37     56     28     78     67     45     42     27     74
D28V10, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3             37
  CLUS_2            6             56
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            3             45
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        3      1      1      3
  RPTN WILD-TYPE     30     30     26     16
D28V11, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        6      0      0      2
  RPTN WILD-TYPE     48     10     24     20
D28V12, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = THOC7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC7 MUTATED        0      0      0      1
  THOC7 WILD-TYPE     46     58     64     42
D29V1, multiclass
[1] "Remove cluster labels:" "THOC7 MUTATED"         
clus
  THOC7 MUTATED THOC7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC7 MUTATED        1      0      0
  THOC7 WILD-TYPE     50     83     77
D29V2, multiclass
[1] "Remove cluster labels:" "THOC7 MUTATED"         
clus
  THOC7 MUTATED THOC7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"THOC7 WILD-TYPE" "THOC7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC7 MUTATED        3      7      1      0
  THOC7 WILD-TYPE    175    176    100     20
D29V3, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             7             176
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC7 MUTATED        6      1      3
  THOC7 WILD-TYPE     81     79     97
D29V4, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC7 MUTATED        1      5      5
  THOC7 WILD-TYPE     88    155    133
D29V5, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC7 MUTATED        6      5      0
  THOC7 WILD-TYPE    176    128     72
D29V6, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC7 MUTATED        3      2      5      1
  THOC7 WILD-TYPE    109     94     87    185
D29V7, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             5              87
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THOC7 MUTATED        3      1      0      1      4      0      2
  THOC7 WILD-TYPE     57     49     49     39     59    125     97
D29V8, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC7 MUTATED        4      5      0      1
  THOC7 WILD-TYPE    126     73     68    195
D29V9, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  THOC7 MUTATED        0      5      2      0      1      1      1      0
  THOC7 WILD-TYPE     40     57     26     80     68     47     42     28
                 vv
clus              CLUS_9
  THOC7 MUTATED        0
  THOC7 WILD-TYPE     74
D29V10, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC7 MUTATED        2      4      0      0
  THOC7 WILD-TYPE     31     27     27     19
D29V11, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             4              27
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC7 MUTATED        5      0      1      0
  THOC7 WILD-TYPE     49     10     23     22
D29V12, multiclass
        clus
vv       THOC7 MUTATED THOC7 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        3      0      1      6
  NF1 WILD-TYPE     43     58     63     37
D30V1, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           6            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        4      2      4
  NF1 WILD-TYPE     47     81     73
D30V2, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            47
  CLUS_2           2            81
  CLUS_3           4            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       46     34     23      4
  NF1 WILD-TYPE    132    149     78     16
D30V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          46           132
  CLUS_2          34           149
  CLUS_3          23            78
  CLUS_4           4            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       35     23     40
  NF1 WILD-TYPE     52     57     60
D30V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          35            52
  CLUS_2          23            57
  CLUS_3          40            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       11     36     42
  NF1 WILD-TYPE     78    124     96
D30V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          11            78
  CLUS_2          36           124
  CLUS_3          42            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       53     25     11
  NF1 WILD-TYPE    129    108     61
D30V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          53           129
  CLUS_2          25           108
  CLUS_3          11            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       31     38     27     11
  NF1 WILD-TYPE     81     58     65    175
D30V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          31            81
  CLUS_2          38            58
  CLUS_3          27            65
  CLUS_4          11           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NF1 MUTATED       23     19     23     15     17      3      7
  NF1 WILD-TYPE     37     31     26     25     46    122     92
D30V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          23            37
  CLUS_2          19            31
  CLUS_3          23            26
  CLUS_4          15            25
  CLUS_5          17            46
  CLUS_6           3           122
  CLUS_7           7            92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       63     21     13      9
  NF1 WILD-TYPE     67     57     55    187
D30V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          63            67
  CLUS_2          21            57
  CLUS_3          13            55
  CLUS_4           9           187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NF1 MUTATED       16     19     10     21     13      6     16      3      2
  NF1 WILD-TYPE     24     43     18     59     56     42     27     25     72
D30V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          16            24
  CLUS_2          19            43
  CLUS_3          10            18
  CLUS_4          21            59
  CLUS_5          13            56
  CLUS_6           6            42
  CLUS_7          16            27
  CLUS_8           3            25
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       10      9     10      6
  NF1 WILD-TYPE     23     22     17     13
D30V11, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10            23
  CLUS_2           9            22
  CLUS_3          10            17
  CLUS_4           6            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       17      3     12      3
  NF1 WILD-TYPE     37      7     12     19
D30V12, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          17            37
  CLUS_2           3             7
  CLUS_3          12            12
  CLUS_4           3            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       13      6      7      9
  FBXW7 WILD-TYPE     33     52     57     34
D31V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            13              33
  CLUS_2             6              52
  CLUS_3             7              57
  CLUS_4             9              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       16      9     10
  FBXW7 WILD-TYPE     35     74     67
D31V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            16              35
  CLUS_2             9              74
  CLUS_3            10              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       64     29     32      5
  FBXW7 WILD-TYPE    114    154     69     15
D31V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            64             114
  CLUS_2            29             154
  CLUS_3            32              69
  CLUS_4             5              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       30     24     39
  FBXW7 WILD-TYPE     57     56     61
D31V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            30              57
  CLUS_2            24              56
  CLUS_3            39              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       17     37     53
  FBXW7 WILD-TYPE     72    123     85
D31V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            17              72
  CLUS_2            37             123
  CLUS_3            53              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       55     34     18
  FBXW7 WILD-TYPE    127     99     54
D31V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            55             127
  CLUS_2            34              99
  CLUS_3            18              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       30     33     33     35
  FBXW7 WILD-TYPE     82     63     59    151
D31V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            30              82
  CLUS_2            33              63
  CLUS_3            33              59
  CLUS_4            35             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXW7 MUTATED       23     12     25     13     19     14     25
  FBXW7 WILD-TYPE     37     38     24     27     44    111     74
D31V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            23              37
  CLUS_2            12              38
  CLUS_3            25              24
  CLUS_4            13              27
  CLUS_5            19              44
  CLUS_6            14             111
  CLUS_7            25              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       50     22     14     43
  FBXW7 WILD-TYPE     80     56     54    153
D31V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            50              80
  CLUS_2            22              56
  CLUS_3            14              54
  CLUS_4            43             153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXW7 MUTATED       11     21     14     20     28      9     10      5
  FBXW7 WILD-TYPE     29     41     14     60     41     39     33     23
                 vv
clus              CLUS_9
  FBXW7 MUTATED       11
  FBXW7 WILD-TYPE     63
D31V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              29
  CLUS_2            21              41
  CLUS_3            14              14
  CLUS_4            20              60
  CLUS_5            28              41
  CLUS_6             9              39
  CLUS_7            10              33
  CLUS_8             5              23
  CLUS_9            11              63
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        9     10      8     10
  FBXW7 WILD-TYPE     24     21     19      9
D31V11, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             9              24
  CLUS_2            10              21
  CLUS_3             8              19
  CLUS_4            10               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED       14      1     11     11
  FBXW7 WILD-TYPE     40      9     13     11
D31V12, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            14              40
  CLUS_2             1               9
  CLUS_3            11              13
  CLUS_4            11              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = CHUK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHUK MUTATED        1      0      0      3
  CHUK WILD-TYPE     45     58     64     40
D32V1, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHUK MUTATED        2      1      1
  CHUK WILD-TYPE     49     82     76
D32V2, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHUK MUTATED       14      3      5      1
  CHUK WILD-TYPE    164    180     96     19
D32V3, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1           14            164
  CLUS_2            3            180
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHUK MUTATED       10      1      8
  CHUK WILD-TYPE     77     79     92
D32V4, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1           10             77
  CLUS_2            1             79
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHUK MUTATED        3     11      8
  CHUK WILD-TYPE     86    149    130
D32V5, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            3             86
  CLUS_2           11            149
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHUK MUTATED       15      5      2
  CHUK WILD-TYPE    167    128     70
D32V6, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1           15            167
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHUK MUTATED        5      8      6      5
  CHUK WILD-TYPE    107     88     86    181
D32V7, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            5            107
  CLUS_2            8             88
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHUK MUTATED        5      4      4      1      6      0      4
  CHUK WILD-TYPE     55     46     45     39     57    125     95
D32V8, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            5             55
  CLUS_2            4             46
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            6             57
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHUK MUTATED       11      5      2      5
  CHUK WILD-TYPE    119     73     66    191
D32V9, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1           11            119
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CHUK MUTATED        1      6      4      4      4      1      2      0      1
  CHUK WILD-TYPE     39     56     24     76     65     47     41     28     73
D32V10, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            1             39
  CLUS_2            6             56
  CLUS_3            4             24
  CLUS_4            4             76
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHUK MUTATED        2      4      1      2
  CHUK WILD-TYPE     31     27     26     17
D32V11, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            2             31
  CLUS_2            4             27
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHUK MUTATED        4      2      2      1
  CHUK WILD-TYPE     50      8     22     21
D32V12, multiclass
        clus
vv       CHUK MUTATED CHUK WILD-TYPE
  CLUS_1            4             50
  CLUS_2            2              8
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = ATXN3L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3L MUTATED        1      1      0      3
  ATXN3L WILD-TYPE     45     57     64     40
D33V1, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN3L MUTATED        2      1      2
  ATXN3L WILD-TYPE     49     82     75
D33V2, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3L MUTATED       10      7      2      1
  ATXN3L WILD-TYPE    168    176     99     19
D33V3, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1             10              168
  CLUS_2              7              176
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN3L MUTATED        5      5      5
  ATXN3L WILD-TYPE     82     75     95
D33V4, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              5               82
  CLUS_2              5               75
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN3L MUTATED        8      6      6
  ATXN3L WILD-TYPE     81    154    132
D33V5, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              8               81
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN3L MUTATED       13      3      4
  ATXN3L WILD-TYPE    169    130     68
D33V6, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1             13              169
  CLUS_2              3              130
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3L MUTATED        3      4      7      6
  ATXN3L WILD-TYPE    109     92     85    180
D33V7, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              7               85
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATXN3L MUTATED        4      1      4      1      5      2      3
  ATXN3L WILD-TYPE     56     49     45     39     58    123     96
D33V8, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              5               58
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3L MUTATED        9      7      0      3
  ATXN3L WILD-TYPE    121     71     68    193
D33V9, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              9              121
  CLUS_2              7               71
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATXN3L MUTATED        2      7      1      3      3      1      0      2
  ATXN3L WILD-TYPE     38     55     27     77     66     47     43     26
                  vv
clus               CLUS_9
  ATXN3L MUTATED        0
  ATXN3L WILD-TYPE     74
D33V10, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              2               38
  CLUS_2              7               55
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3L MUTATED        1      2      0      2
  ATXN3L WILD-TYPE     32     29     27     17
D33V11, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3L MUTATED        4      0      1      0
  ATXN3L WILD-TYPE     50     10     23     22
D33V12, multiclass
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = MGA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        4      1      1      4
  MGA WILD-TYPE     42     57     63     39
D34V1, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           4            42
  CLUS_2           1            57
  CLUS_3           1            63
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED        4      4      2
  MGA WILD-TYPE     47     79     75
D34V2, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           4            47
  CLUS_2           4            79
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED       31      3      7      2
  MGA WILD-TYPE    147    180     94     18
D34V3, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          31           147
  CLUS_2           3           180
  CLUS_3           7            94
  CLUS_4           2            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED       14      4     13
  MGA WILD-TYPE     73     76     87
D34V4, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          14            73
  CLUS_2           4            76
  CLUS_3          13            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED        8     14     15
  MGA WILD-TYPE     81    146    123
D34V5, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           8            81
  CLUS_2          14           146
  CLUS_3          15           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED       18     13      6
  MGA WILD-TYPE    164    120     66
D34V6, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          18           164
  CLUS_2          13           120
  CLUS_3           6            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        4     14     13     12
  MGA WILD-TYPE    108     82     79    174
D34V7, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           4           108
  CLUS_2          14            82
  CLUS_3          13            79
  CLUS_4          12           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MGA MUTATED        6      5     16      2      2      3      9
  MGA WILD-TYPE     54     45     33     38     61    122     90
D34V8, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            54
  CLUS_2           5            45
  CLUS_3          16            33
  CLUS_4           2            38
  CLUS_5           2            61
  CLUS_6           3           122
  CLUS_7           9            90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED       17      6      4     15
  MGA WILD-TYPE    113     72     64    181
D34V9, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          17           113
  CLUS_2           6            72
  CLUS_3           4            64
  CLUS_4          15           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MGA MUTATED        8      8      4      5     11      1      1      1      3
  MGA WILD-TYPE     32     54     24     75     58     47     42     27     71
D34V10, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           8            32
  CLUS_2           8            54
  CLUS_3           4            24
  CLUS_4           5            75
  CLUS_5          11            58
  CLUS_6           1            47
  CLUS_7           1            42
  CLUS_8           1            27
  CLUS_9           3            71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        3      1      2      1
  MGA WILD-TYPE     30     30     25     18
D34V11, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           3            30
  CLUS_2           1            30
  CLUS_3           2            25
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        4      0      3      0
  MGA WILD-TYPE     50     10     21     22
D34V12, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           4            50
  CLUS_2           0            10
  CLUS_3           3            21
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = TPRKB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPRKB MUTATED        0      0      0      0
  TPRKB WILD-TYPE     46     58     64     43
D35V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPRKB MUTATED        0      0      0
  TPRKB WILD-TYPE     51     83     77
D35V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPRKB MUTATED        6      2      2      0
  TPRKB WILD-TYPE    172    181     99     20
D35V3, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPRKB MUTATED        4      1      5
  TPRKB WILD-TYPE     83     79     95
D35V4, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPRKB MUTATED        1      3      4
  TPRKB WILD-TYPE     88    157    134
D35V5, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPRKB MUTATED        5      2      1
  TPRKB WILD-TYPE    177    131     71
D35V6, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPRKB MUTATED        2      3      5      0
  TPRKB WILD-TYPE    110     93     87    186
D35V7, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPRKB MUTATED        2      1      5      0      2      0      0
  TPRKB WILD-TYPE     58     49     44     40     61    125     99
D35V8, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPRKB MUTATED        4      5      1      0
  TPRKB WILD-TYPE    126     73     67    196
D35V9, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             4             126
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TPRKB MUTATED        0      6      0      1      1      1      1      0
  TPRKB WILD-TYPE     40     56     28     79     68     47     42     28
                 vv
clus              CLUS_9
  TPRKB MUTATED        0
  TPRKB WILD-TYPE     74
D35V10, multiclass
        clus
vv       TPRKB MUTATED TPRKB WILD-TYPE
  CLUS_1             0              40
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPRKB MUTATED        0      0      0      1
  TPRKB WILD-TYPE     33     31     27     18
D35V11, multiclass
[1] "Remove cluster labels:" "TPRKB MUTATED"         
clus
  TPRKB MUTATED TPRKB WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-G5-6641 
"TPRKB WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPRKB MUTATED        1      0      0      0
  TPRKB WILD-TYPE     53     10     24     22
D35V12, multiclass
[1] "Remove cluster labels:" "TPRKB MUTATED"         
clus
  TPRKB MUTATED TPRKB WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" "TPRKB WILD-TYPE" 
     TCGA-G5-6641 
"TPRKB WILD-TYPE" 

Clustering(36) Variable = MVK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        1      0      0      0
  MVK WILD-TYPE     45     58     64     43
D36V1, multiclass
[1] "Remove cluster labels:" "MVK MUTATED"           
clus
  MVK MUTATED MVK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        1      0      0
  MVK WILD-TYPE     50     83     77
D36V2, multiclass
[1] "Remove cluster labels:" "MVK MUTATED"           
clus
  MVK MUTATED MVK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" "MVK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED       14      0      0      0
  MVK WILD-TYPE    164    183    101     20
D36V3, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1          14           164
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        4      0      8
  MVK WILD-TYPE     83     80     92
D36V4, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           4            83
  CLUS_2           0            80
  CLUS_3           8            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        1      4      9
  MVK WILD-TYPE     88    156    129
D36V5, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1            88
  CLUS_2           4           156
  CLUS_3           9           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        9      5      0
  MVK WILD-TYPE    173    128     72
D36V6, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           9           173
  CLUS_2           5           128
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        0      4      8      2
  MVK WILD-TYPE    112     92     84    184
D36V7, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0           112
  CLUS_2           4            92
  CLUS_3           8            84
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MVK MUTATED        0      1      9      0      1      0      3
  MVK WILD-TYPE     60     49     40     40     62    125     96
D36V8, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            60
  CLUS_2           1            49
  CLUS_3           9            40
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        6      3      0      5
  MVK WILD-TYPE    124     75     68    191
D36V9, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           6           124
  CLUS_2           3            75
  CLUS_3           0            68
  CLUS_4           5           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MVK MUTATED        1      6      0      0      7      0      0      0      0
  MVK WILD-TYPE     39     56     28     80     62     48     43     28     74
D36V10, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1            39
  CLUS_2           6            56
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           7            62
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        2      0      0      3
  MVK WILD-TYPE     31     31     27     16
D36V11, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        4      0      1      0
  MVK WILD-TYPE     50     10     23     22
D36V12, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           4            50
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        5      0      0      2
  ZBTB20 WILD-TYPE     41     58     64     41
D37V1, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        5      0      2
  ZBTB20 WILD-TYPE     46     83     75
D37V2, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED       18      1      2      0
  ZBTB20 WILD-TYPE    160    182     99     20
D37V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        2      1     12
  ZBTB20 WILD-TYPE     85     79     88
D37V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        1      4     12
  ZBTB20 WILD-TYPE     88    156    126
D37V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       11      6      0
  ZBTB20 WILD-TYPE    171    127     72
D37V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        1      9      5      7
  ZBTB20 WILD-TYPE    111     87     87    179
D37V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              9               87
  CLUS_3              5               87
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB20 MUTATED        2      1     12      0      1      0      6
  ZBTB20 WILD-TYPE     58     49     37     40     62    125     93
D37V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3             12               37
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        9      2      0     11
  ZBTB20 WILD-TYPE    121     76     68    185
D37V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZBTB20 MUTATED        1      3      1      2     13      1      0      1
  ZBTB20 WILD-TYPE     39     59     27     78     56     47     43     27
                  vv
clus               CLUS_9
  ZBTB20 MUTATED        0
  ZBTB20 WILD-TYPE     74
D37V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5             13               56
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        1      1      0      3
  ZBTB20 WILD-TYPE     32     30     27     16
D37V11, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        3      1      1      0
  ZBTB20 WILD-TYPE     51      9     23     22
D37V12, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = BCL9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        5      1      1      4
  BCL9 WILD-TYPE     41     57     63     39
D38V1, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED        7      2      2
  BCL9 WILD-TYPE     44     81     75
D38V2, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED       20      5      1      0
  BCL9 WILD-TYPE    158    178    100     20
D38V3, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1           20            158
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED        6      3      6
  BCL9 WILD-TYPE     81     77     94
D38V4, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            3             77
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED        3      8     11
  BCL9 WILD-TYPE     86    152    127
D38V5, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            8            152
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED       12      7      3
  BCL9 WILD-TYPE    170    126     69
D38V6, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            7            126
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        5      5      5     12
  BCL9 WILD-TYPE    107     91     87    174
D38V7, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL9 MUTATED        5      1      8      1      1      1     10
  BCL9 WILD-TYPE     55     49     41     39     62    124     89
D38V8, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            1             49
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        5      6      5     10
  BCL9 WILD-TYPE    125     72     63    186
D38V9, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            6             72
  CLUS_3            5             63
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BCL9 MUTATED        0      5      2      4     11      1      3      0      0
  BCL9 WILD-TYPE     40     57     26     76     58     47     40     28     74
D38V10, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5           11             58
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        5      0      2      3
  BCL9 WILD-TYPE     28     31     25     16
D38V11, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        7      1      1      1
  BCL9 WILD-TYPE     47      9     23     21
D38V12, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            7             47
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = ERBB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        3      1      1      4
  ERBB2 WILD-TYPE     43     57     63     39
D39V1, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        4      1      4
  ERBB2 WILD-TYPE     47     82     73
D39V2, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED       14     11      7      4
  ERBB2 WILD-TYPE    164    172     94     16
D39V3, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            14             164
  CLUS_2            11             172
  CLUS_3             7              94
  CLUS_4             4              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       12      5     10
  ERBB2 WILD-TYPE     75     75     90
D39V4, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            12              75
  CLUS_2             5              75
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        4      7     17
  ERBB2 WILD-TYPE     85    153    121
D39V5, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             7             153
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       17      8      3
  ERBB2 WILD-TYPE    165    125     69
D39V6, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            17             165
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        6     14      9      7
  ERBB2 WILD-TYPE    106     82     83    179
D39V7, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             6             106
  CLUS_2            14              82
  CLUS_3             9              83
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERBB2 MUTATED        5      8      4      7      5      1      6
  ERBB2 WILD-TYPE     55     42     45     33     58    124     93
D39V8, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             8              42
  CLUS_3             4              45
  CLUS_4             7              33
  CLUS_5             5              58
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED       16      6      5      9
  ERBB2 WILD-TYPE    114     72     63    187
D39V9, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            16             114
  CLUS_2             6              72
  CLUS_3             5              63
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERBB2 MUTATED        8      7      2      2      7      1      6      1
  ERBB2 WILD-TYPE     32     55     26     78     62     47     37     27
                 vv
clus              CLUS_9
  ERBB2 MUTATED        2
  ERBB2 WILD-TYPE     72
D39V10, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             8              32
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             6              37
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        2      3      1      3
  ERBB2 WILD-TYPE     31     28     26     16
D39V11, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        6      1      1      1
  ERBB2 WILD-TYPE     48      9     23     21
D39V12, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = P2RY13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY13 MUTATED        2      0      0      0
  P2RY13 WILD-TYPE     44     58     64     43
D40V1, multiclass
[1] "Remove cluster labels:" "P2RY13 MUTATED"        
clus
  P2RY13 MUTATED P2RY13 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AY-4071 
"P2RY13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  P2RY13 MUTATED        1      1      0
  P2RY13 WILD-TYPE     50     82     77
D40V2, multiclass
[1] "Remove cluster labels:" "P2RY13 MUTATED"        
clus
  P2RY13 MUTATED P2RY13 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" "P2RY13 WILD-TYPE" 
      TCGA-AY-4071 
"P2RY13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY13 MUTATED       10      1      3      1
  P2RY13 WILD-TYPE    168    182     98     19
D40V3, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  P2RY13 MUTATED        4      0      9
  P2RY13 WILD-TYPE     83     80     91
D40V4, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  P2RY13 MUTATED        1      4      5
  P2RY13 WILD-TYPE     88    156    133
D40V5, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  P2RY13 MUTATED        5      4      1
  P2RY13 WILD-TYPE    177    129     71
D40V6, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY13 MUTATED        3      6      4      2
  P2RY13 WILD-TYPE    109     90     88    184
D40V7, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  P2RY13 MUTATED        3      3      4      2      1      1      1
  P2RY13 WILD-TYPE     57     47     45     38     62    124     98
D40V8, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY13 MUTATED        8      2      1      4
  P2RY13 WILD-TYPE    122     76     67    192
D40V9, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  P2RY13 MUTATED        2      2      0      5      4      1      1      0
  P2RY13 WILD-TYPE     38     60     28     75     65     47     42     28
                  vv
clus               CLUS_9
  P2RY13 MUTATED        0
  P2RY13 WILD-TYPE     74
D40V10, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              5               75
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY13 MUTATED        1      1      0      1
  P2RY13 WILD-TYPE     32     30     27     18
D40V11, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY13 MUTATED        2      0      1      0
  P2RY13 WILD-TYPE     52     10     23     22
D40V12, multiclass
        clus
vv       P2RY13 MUTATED P2RY13 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = ST3GAL6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST3GAL6 MUTATED        3      0      0      2
  ST3GAL6 WILD-TYPE     43     58     64     41
D41V1, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST3GAL6 MUTATED        4      0      1
  ST3GAL6 WILD-TYPE     47     83     76
D41V2, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST3GAL6 MUTATED       10      1      0      1
  ST3GAL6 WILD-TYPE    168    182    101     19
D41V3, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST3GAL6 MUTATED        2      0      5
  ST3GAL6 WILD-TYPE     85     80     95
D41V4, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST3GAL6 MUTATED        1      3      5
  ST3GAL6 WILD-TYPE     88    157    133
D41V5, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST3GAL6 MUTATED        4      3      2
  ST3GAL6 WILD-TYPE    178    130     70
D41V6, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST3GAL6 MUTATED        1      2      4      5
  ST3GAL6 WILD-TYPE    111     94     88    181
D41V7, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ST3GAL6 MUTATED        2      0      4      0      2      0      4
  ST3GAL6 WILD-TYPE     58     50     45     40     61    125     95
D41V8, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST3GAL6 MUTATED        4      3      0      3
  ST3GAL6 WILD-TYPE    126     75     68    193
D41V9, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ST3GAL6 MUTATED        0      3      1      1      5      0      0      0
  ST3GAL6 WILD-TYPE     40     59     27     79     64     48     43     28
                   vv
clus                CLUS_9
  ST3GAL6 MUTATED        0
  ST3GAL6 WILD-TYPE     74
D41V10, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST3GAL6 MUTATED        0      1      0      2
  ST3GAL6 WILD-TYPE     33     30     27     17
D41V11, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST3GAL6 MUTATED        1      0      1      1
  ST3GAL6 WILD-TYPE     53     10     23     21
D41V12, multiclass
        clus
vv       ST3GAL6 MUTATED ST3GAL6 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = IQCD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQCD MUTATED        1      1      0      1
  IQCD WILD-TYPE     45     57     64     42
D42V1, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IQCD MUTATED        1      1      1
  IQCD WILD-TYPE     50     82     76
D42V2, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQCD MUTATED        7      2      2      2
  IQCD WILD-TYPE    171    181     99     18
D42V3, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            7            171
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IQCD MUTATED        4      1      5
  IQCD WILD-TYPE     83     79     95
D42V4, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IQCD MUTATED        2      4      5
  IQCD WILD-TYPE     87    156    133
D42V5, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IQCD MUTATED        4      6      1
  IQCD WILD-TYPE    178    127     71
D42V6, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            4            178
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQCD MUTATED        2      6      3      2
  IQCD WILD-TYPE    110     90     89    184
D42V7, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IQCD MUTATED        3      2      4      1      1      1      1
  IQCD WILD-TYPE     57     48     45     39     62    124     98
D42V8, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQCD MUTATED        4      3      2      4
  IQCD WILD-TYPE    126     75     66    192
D42V9, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IQCD MUTATED        2      3      0      3      3      0      1      1      0
  IQCD WILD-TYPE     38     59     28     77     66     48     42     27     74
D42V10, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQCD MUTATED        2      1      2      0
  IQCD WILD-TYPE     31     30     25     19
D42V11, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQCD MUTATED        3      1      1      0
  IQCD WILD-TYPE     51      9     23     22
D42V12, multiclass
        clus
vv       IQCD MUTATED IQCD WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = PLEKHF2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHF2 MUTATED        1      0      0      0
  PLEKHF2 WILD-TYPE     45     58     64     43
D43V1, multiclass
[1] "Remove cluster labels:" "PLEKHF2 MUTATED"       
clus
  PLEKHF2 MUTATED PLEKHF2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHF2 MUTATED        1      0      0
  PLEKHF2 WILD-TYPE     50     83     77
D43V2, multiclass
[1] "Remove cluster labels:" "PLEKHF2 MUTATED"       
clus
  PLEKHF2 MUTATED PLEKHF2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PLEKHF2 WILD-TYPE" "PLEKHF2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHF2 MUTATED        6      3      2      1
  PLEKHF2 WILD-TYPE    172    180     99     19
D43V3, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               3               180
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHF2 MUTATED        3      4      4
  PLEKHF2 WILD-TYPE     84     76     96
D43V4, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               4                76
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHF2 MUTATED        3      2      5
  PLEKHF2 WILD-TYPE     86    158    133
D43V5, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHF2 MUTATED        5      2      3
  PLEKHF2 WILD-TYPE    177    131     69
D43V6, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               2               131
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHF2 MUTATED        4      5      2      1
  PLEKHF2 WILD-TYPE    108     91     90    185
D43V7, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               5                91
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEKHF2 MUTATED        2      3      2      3      1      0      1
  PLEKHF2 WILD-TYPE     58     47     47     37     62    125     98
D43V8, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               2                47
  CLUS_4               3                37
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHF2 MUTATED        7      3      1      1
  PLEKHF2 WILD-TYPE    123     75     67    195
D43V9, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLEKHF2 MUTATED        3      1      0      2      2      2      2      0
  PLEKHF2 WILD-TYPE     37     61     28     78     67     46     41     28
                   vv
clus                CLUS_9
  PLEKHF2 MUTATED        0
  PLEKHF2 WILD-TYPE     74
D43V10, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               2                46
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHF2 MUTATED        1      2      0      2
  PLEKHF2 WILD-TYPE     32     29     27     17
D43V11, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHF2 MUTATED        1      1      1      2
  PLEKHF2 WILD-TYPE     53      9     23     20
D43V12, multiclass
        clus
vv       PLEKHF2 MUTATED PLEKHF2 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = NR1H3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        1      1      0      2
  NR1H3 WILD-TYPE     45     57     64     41
D44V1, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        3      1      0
  NR1H3 WILD-TYPE     48     82     77
D44V2, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED       10      1      3      1
  NR1H3 WILD-TYPE    168    182     98     19
D44V3, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        4      3      4
  NR1H3 WILD-TYPE     83     77     96
D44V4, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        2      2      8
  NR1H3 WILD-TYPE     87    158    130
D44V5, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR1H3 MUTATED        8      2      2
  NR1H3 WILD-TYPE    174    131     70
D44V6, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        5      3      4      3
  NR1H3 WILD-TYPE    107     93     88    183
D44V7, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NR1H3 MUTATED        2      1      6      2      0      1      3
  NR1H3 WILD-TYPE     58     49     43     38     63    124     96
D44V8, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        9      2      0      3
  NR1H3 WILD-TYPE    121     76     68    193
D44V9, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NR1H3 MUTATED        1      3      1      0      5      2      2      0
  NR1H3 WILD-TYPE     39     59     27     80     64     46     41     28
                 vv
clus              CLUS_9
  NR1H3 MUTATED        0
  NR1H3 WILD-TYPE     74
D44V10, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        1      0      0      4
  NR1H3 WILD-TYPE     32     31     27     15
D44V11, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR1H3 MUTATED        4      0      1      0
  NR1H3 WILD-TYPE     50     10     23     22
D44V12, multiclass
        clus
vv       NR1H3 MUTATED NR1H3 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = ALPK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        2      0      1      5
  ALPK2 WILD-TYPE     44     58     63     38
D45V1, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED        4      2      2
  ALPK2 WILD-TYPE     47     81     75
D45V2, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED       32      8      5      1
  ALPK2 WILD-TYPE    146    175     96     19
D45V3, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            32             146
  CLUS_2             8             175
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED       15      8     15
  ALPK2 WILD-TYPE     72     72     85
D45V4, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            15              72
  CLUS_2             8              72
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED        4     17     19
  ALPK2 WILD-TYPE     85    143    119
D45V5, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            17             143
  CLUS_3            19             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED       21     12      7
  ALPK2 WILD-TYPE    161    121     65
D45V6, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            21             161
  CLUS_2            12             121
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        8     19     11      8
  ALPK2 WILD-TYPE    104     77     81    178
D45V7, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             8             104
  CLUS_2            19              77
  CLUS_3            11              81
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALPK2 MUTATED        5      6     19      4      4      3      5
  ALPK2 WILD-TYPE     55     44     30     36     59    122     94
D45V8, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             6              44
  CLUS_3            19              30
  CLUS_4             4              36
  CLUS_5             4              59
  CLUS_6             3             122
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED       23      7      2     13
  ALPK2 WILD-TYPE    107     71     66    183
D45V9, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            23             107
  CLUS_2             7              71
  CLUS_3             2              66
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALPK2 MUTATED        4     10      4      7     16      1      2      0
  ALPK2 WILD-TYPE     36     52     24     73     53     47     41     28
                 vv
clus              CLUS_9
  ALPK2 MUTATED        1
  ALPK2 WILD-TYPE     73
D45V10, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2            10              52
  CLUS_3             4              24
  CLUS_4             7              73
  CLUS_5            16              53
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        2      2      2      5
  ALPK2 WILD-TYPE     31     29     25     14
D45V11, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        5      0      5      1
  ALPK2 WILD-TYPE     49     10     19     21
D45V12, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = ASXL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        3      1      0      5
  ASXL1 WILD-TYPE     43     57     64     38
D46V1, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        4      2      3
  ASXL1 WILD-TYPE     47     81     74
D46V2, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED       26     14      3      3
  ASXL1 WILD-TYPE    152    169     98     17
D46V3, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1            26             152
  CLUS_2            14             169
  CLUS_3             3              98
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED       14      8     15
  ASXL1 WILD-TYPE     73     72     85
D46V4, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1            14              73
  CLUS_2             8              72
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED        6     16     17
  ASXL1 WILD-TYPE     83    144    121
D46V5, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             6              83
  CLUS_2            16             144
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL1 MUTATED       19     15      5
  ASXL1 WILD-TYPE    163    118     67
D46V6, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1            19             163
  CLUS_2            15             118
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED       11     12     14      9
  ASXL1 WILD-TYPE    101     84     78    177
D46V7, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1            11             101
  CLUS_2            12              84
  CLUS_3            14              78
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASXL1 MUTATED        4     12      9      1     10      2      8
  ASXL1 WILD-TYPE     56     38     40     39     53    123     91
D46V8, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2            12              38
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5            10              53
  CLUS_6             2             123
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED       21     10      4     10
  ASXL1 WILD-TYPE    109     68     64    186
D46V9, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1            21             109
  CLUS_2            10              68
  CLUS_3             4              64
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ASXL1 MUTATED        5     10      5     12      3      4      3      1
  ASXL1 WILD-TYPE     35     52     23     68     66     44     40     27
                 vv
clus              CLUS_9
  ASXL1 MUTATED        2
  ASXL1 WILD-TYPE     72
D46V10, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             5              35
  CLUS_2            10              52
  CLUS_3             5              23
  CLUS_4            12              68
  CLUS_5             3              66
  CLUS_6             4              44
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED        5      5      4      5
  ASXL1 WILD-TYPE     28     26     23     14
D46V11, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             5              26
  CLUS_3             4              23
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL1 MUTATED       11      4      1      3
  ASXL1 WILD-TYPE     43      6     23     19
D46V12, multiclass
        clus
vv       ASXL1 MUTATED ASXL1 WILD-TYPE
  CLUS_1            11              43
  CLUS_2             4               6
  CLUS_3             1              23
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = ALG12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG12 MUTATED        0      0      1      1
  ALG12 WILD-TYPE     46     58     63     42
D47V1, multiclass
[1] "Remove cluster labels:" "ALG12 MUTATED"         
clus
  ALG12 MUTATED ALG12 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AY-4071 
"ALG12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG12 MUTATED        1      0      1
  ALG12 WILD-TYPE     50     83     76
D47V2, multiclass
[1] "Remove cluster labels:" "ALG12 MUTATED"         
clus
  ALG12 MUTATED ALG12 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AY-4071 
"ALG12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG12 MUTATED        7      0      0      0
  ALG12 WILD-TYPE    171    183    101     20
D47V3, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG12 MUTATED        0      0      5
  ALG12 WILD-TYPE     87     80     95
D47V4, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG12 MUTATED        2      4      1
  ALG12 WILD-TYPE     87    156    137
D47V5, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG12 MUTATED        3      3      1
  ALG12 WILD-TYPE    179    130     71
D47V6, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG12 MUTATED        0      5      0      2
  ALG12 WILD-TYPE    112     91     92    184
D47V7, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALG12 MUTATED        0      0      3      1      0      1      2
  ALG12 WILD-TYPE     60     50     46     39     63    124     97
D47V8, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG12 MUTATED        4      0      0      3
  ALG12 WILD-TYPE    126     78     68    193
D47V9, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALG12 MUTATED        1      1      0      0      4      1      0      0
  ALG12 WILD-TYPE     39     61     28     80     65     47     43     28
                 vv
clus              CLUS_9
  ALG12 MUTATED        0
  ALG12 WILD-TYPE     74
D47V10, multiclass
        clus
vv       ALG12 MUTATED ALG12 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG12 MUTATED        0      0      0      1
  ALG12 WILD-TYPE     33     31     27     18
D47V11, multiclass
[1] "Remove cluster labels:" "ALG12 MUTATED"         
clus
  ALG12 MUTATED ALG12 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-G5-6641 
"ALG12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG12 MUTATED        0      0      1      0
  ALG12 WILD-TYPE     54     10     23     22
D47V12, multiclass
[1] "Remove cluster labels:" "ALG12 MUTATED"         
clus
  ALG12 MUTATED ALG12 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" "ALG12 WILD-TYPE" 
     TCGA-G5-6641 
"ALG12 WILD-TYPE" 

Clustering(48) Variable = PTCH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED        6      0      0      4
  PTCH1 WILD-TYPE     40     58     64     39
D48V1, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED        7      1      2
  PTCH1 WILD-TYPE     44     82     75
D48V2, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED       49     28     20      4
  PTCH1 WILD-TYPE    129    155     81     16
D48V3, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            49             129
  CLUS_2            28             155
  CLUS_3            20              81
  CLUS_4             4              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED       34     22     35
  PTCH1 WILD-TYPE     53     58     65
D48V4, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            34              53
  CLUS_2            22              58
  CLUS_3            35              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED       12     37     38
  PTCH1 WILD-TYPE     77    123    100
D48V5, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            12              77
  CLUS_2            37             123
  CLUS_3            38             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH1 MUTATED       43     31     13
  PTCH1 WILD-TYPE    139    102     59
D48V6, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            43             139
  CLUS_2            31             102
  CLUS_3            13              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED       35     30     27     11
  PTCH1 WILD-TYPE     77     66     65    175
D48V7, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            35              77
  CLUS_2            30              66
  CLUS_3            27              65
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTCH1 MUTATED       25     20     24      9     14      1     10
  PTCH1 WILD-TYPE     35     30     25     31     49    124     89
D48V8, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            25              35
  CLUS_2            20              30
  CLUS_3            24              25
  CLUS_4             9              31
  CLUS_5            14              49
  CLUS_6             1             124
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED       59     14     12     17
  PTCH1 WILD-TYPE     71     64     56    179
D48V9, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            59              71
  CLUS_2            14              64
  CLUS_3            12              56
  CLUS_4            17             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTCH1 MUTATED       18     15     12     16     16     10     13      1
  PTCH1 WILD-TYPE     22     47     16     64     53     38     30     27
                 vv
clus              CLUS_9
  PTCH1 MUTATED        1
  PTCH1 WILD-TYPE     73
D48V10, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            18              22
  CLUS_2            15              47
  CLUS_3            12              16
  CLUS_4            16              64
  CLUS_5            16              53
  CLUS_6            10              38
  CLUS_7            13              30
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED       10      6      7      9
  PTCH1 WILD-TYPE     23     25     20     10
D48V11, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            10              23
  CLUS_2             6              25
  CLUS_3             7              20
  CLUS_4             9              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH1 MUTATED       15      0      9      8
  PTCH1 WILD-TYPE     39     10     15     14
D48V12, multiclass
        clus
vv       PTCH1 MUTATED PTCH1 WILD-TYPE
  CLUS_1            15              39
  CLUS_2             0              10
  CLUS_3             9              15
  CLUS_4             8              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = GRB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB2 MUTATED        1      0      0      2
  GRB2 WILD-TYPE     45     58     64     41
D49V1, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRB2 MUTATED        2      0      1
  GRB2 WILD-TYPE     49     83     76
D49V2, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB2 MUTATED        6      5      0      0
  GRB2 WILD-TYPE    172    178    101     20
D49V3, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            5            178
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRB2 MUTATED        2      1      5
  GRB2 WILD-TYPE     85     79     95
D49V4, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRB2 MUTATED        1      6      2
  GRB2 WILD-TYPE     88    154    136
D49V5, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRB2 MUTATED        4      4      1
  GRB2 WILD-TYPE    178    129     71
D49V6, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB2 MUTATED        2      4      2      3
  GRB2 WILD-TYPE    110     92     90    183
D49V7, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRB2 MUTATED        2      1      4      2      0      0      2
  GRB2 WILD-TYPE     58     49     45     38     63    125     97
D49V8, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB2 MUTATED        6      1      1      2
  GRB2 WILD-TYPE    124     77     67    194
D49V9, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GRB2 MUTATED        1      0      1      1      4      1      2      0      0
  GRB2 WILD-TYPE     39     62     27     79     65     47     41     28     74
D49V10, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB2 MUTATED        2      0      0      1
  GRB2 WILD-TYPE     31     31     27     18
D49V11, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB2 MUTATED        2      0      1      0
  GRB2 WILD-TYPE     52     10     23     22
D49V12, multiclass
        clus
vv       GRB2 MUTATED GRB2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = NLRC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC4 MUTATED        3      0      0      3
  NLRC4 WILD-TYPE     43     58     64     40
D50V1, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC4 MUTATED        3      1      2
  NLRC4 WILD-TYPE     48     82     75
D50V2, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC4 MUTATED       16      4      4      2
  NLRC4 WILD-TYPE    162    179     97     18
D50V3, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC4 MUTATED       10      2      8
  NLRC4 WILD-TYPE     77     78     92
D50V4, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC4 MUTATED        5      6      9
  NLRC4 WILD-TYPE     84    154    129
D50V5, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             6             154
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC4 MUTATED       11      4      5
  NLRC4 WILD-TYPE    171    129     67
D50V6, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             4             129
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC4 MUTATED        4      6      9      7
  NLRC4 WILD-TYPE    108     90     83    179
D50V7, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             9              83
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRC4 MUTATED        4      2      7      3      4      1      5
  NLRC4 WILD-TYPE     56     48     42     37     59    124     94
D50V8, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             3              37
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC4 MUTATED       11      6      1      8
  NLRC4 WILD-TYPE    119     72     67    188
D50V9, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NLRC4 MUTATED        9      6      3      1      6      0      1      0
  NLRC4 WILD-TYPE     31     56     25     79     63     48     42     28
                 vv
clus              CLUS_9
  NLRC4 MUTATED        0
  NLRC4 WILD-TYPE     74
D50V10, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             9              31
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC4 MUTATED        4      0      0      3
  NLRC4 WILD-TYPE     29     31     27     16
D50V11, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC4 MUTATED        6      0      1      0
  NLRC4 WILD-TYPE     48     10     23     22
D50V12, multiclass
        clus
vv       NLRC4 MUTATED NLRC4 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = PLAGL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        0      0      0      0
  PLAGL2 WILD-TYPE     46     58     64     43
D51V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        0      0      0
  PLAGL2 WILD-TYPE     51     83     77
D51V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        6      0      0      0
  PLAGL2 WILD-TYPE    172    183    101     20
D51V3, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        1      0      5
  PLAGL2 WILD-TYPE     86     80     95
D51V4, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        1      3      2
  PLAGL2 WILD-TYPE     88    157    136
D51V5, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        3      2      1
  PLAGL2 WILD-TYPE    179    131     71
D51V6, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        0      6      0      0
  PLAGL2 WILD-TYPE    112     90     92    186
D51V7, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              0               92
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLAGL2 MUTATED        0      0      5      1      0      0      0
  PLAGL2 WILD-TYPE     60     50     44     39     63    125     99
D51V8, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        6      0      0      0
  PLAGL2 WILD-TYPE    124     78     68    196
D51V9, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLAGL2 MUTATED        3      0      0      0      2      0      1      0
  PLAGL2 WILD-TYPE     37     62     28     80     67     48     42     28
                  vv
clus               CLUS_9
  PLAGL2 MUTATED        0
  PLAGL2 WILD-TYPE     74
D51V10, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        0      0      0      1
  PLAGL2 WILD-TYPE     33     31     27     18
D51V11, multiclass
[1] "Remove cluster labels:" "PLAGL2 MUTATED"        
clus
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-G5-6641 
"PLAGL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        0      0      1      0
  PLAGL2 WILD-TYPE     54     10     23     22
D51V12, multiclass
[1] "Remove cluster labels:" "PLAGL2 MUTATED"        
clus
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" "PLAGL2 WILD-TYPE" 
      TCGA-G5-6641 
"PLAGL2 WILD-TYPE" 

Clustering(52) Variable = C11ORF30 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF30 MUTATED        6      0      0      2
  C11ORF30 WILD-TYPE     40     58     64     41
D52V1, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                6                 40
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF30 MUTATED        6      1      1
  C11ORF30 WILD-TYPE     45     82     76
D52V2, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                6                 45
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF30 MUTATED       19      1      3      0
  C11ORF30 WILD-TYPE    159    182     98     20
D52V3, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1               19                159
  CLUS_2                1                182
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF30 MUTATED        5      2      8
  C11ORF30 WILD-TYPE     82     78     92
D52V4, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                2                 78
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF30 MUTATED        1      6     11
  C11ORF30 WILD-TYPE     88    154    127
D52V5, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                6                154
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF30 MUTATED        8      8      2
  C11ORF30 WILD-TYPE    174    125     70
D52V6, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                8                174
  CLUS_2                8                125
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF30 MUTATED        2      6      7      8
  C11ORF30 WILD-TYPE    110     90     85    178
D52V7, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                6                 90
  CLUS_3                7                 85
  CLUS_4                8                178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C11ORF30 MUTATED        3      4      6      0      3      1      6
  C11ORF30 WILD-TYPE     57     46     43     40     60    124     93
D52V8, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                4                 46
  CLUS_3                6                 43
  CLUS_4                0                 40
  CLUS_5                3                 60
  CLUS_6                1                124
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF30 MUTATED        8      4      0     10
  C11ORF30 WILD-TYPE    122     74     68    186
D52V9, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                8                122
  CLUS_2                4                 74
  CLUS_3                0                 68
  CLUS_4               10                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C11ORF30 MUTATED        2      3      1      5      5      2      1      2
  C11ORF30 WILD-TYPE     38     59     27     75     64     46     42     26
                    vv
clus                 CLUS_9
  C11ORF30 MUTATED        1
  C11ORF30 WILD-TYPE     73
D52V10, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                5                 75
  CLUS_5                5                 64
  CLUS_6                2                 46
  CLUS_7                1                 42
  CLUS_8                2                 26
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF30 MUTATED        1      2      0      1
  C11ORF30 WILD-TYPE     32     29     27     18
D52V11, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 29
  CLUS_3                0                 27
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF30 MUTATED        2      0      2      0
  C11ORF30 WILD-TYPE     52     10     22     22
D52V12, multiclass
        clus
vv       C11ORF30 MUTATED C11ORF30 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DIP2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2B MUTATED        4      2      0      4
  DIP2B WILD-TYPE     42     56     64     39
D53V1, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIP2B MUTATED        5      4      1
  DIP2B WILD-TYPE     46     79     76
D53V2, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             5              46
  CLUS_2             4              79
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2B MUTATED       15      8      7      0
  DIP2B WILD-TYPE    163    175     94     20
D53V3, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1            15             163
  CLUS_2             8             175
  CLUS_3             7              94
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIP2B MUTATED        4      5     11
  DIP2B WILD-TYPE     83     75     89
D53V4, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             4              83
  CLUS_2             5              75
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIP2B MUTATED        3     11     12
  DIP2B WILD-TYPE     86    149    126
D53V5, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             3              86
  CLUS_2            11             149
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIP2B MUTATED       12     11      3
  DIP2B WILD-TYPE    170    122     69
D53V6, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1            12             170
  CLUS_2            11             122
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2B MUTATED        6     12      4      8
  DIP2B WILD-TYPE    106     84     88    178
D53V7, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             6             106
  CLUS_2            12              84
  CLUS_3             4              88
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIP2B MUTATED        3      8      6      2      2      4      5
  DIP2B WILD-TYPE     57     42     43     38     61    121     94
D53V8, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             3              57
  CLUS_2             8              42
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             4             121
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2B MUTATED       13      3      2     11
  DIP2B WILD-TYPE    117     75     66    185
D53V9, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1            13             117
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DIP2B MUTATED        1      3      3      7      7      1      3      3
  DIP2B WILD-TYPE     39     59     25     73     62     47     40     25
                 vv
clus              CLUS_9
  DIP2B MUTATED        1
  DIP2B WILD-TYPE     73
D53V10, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             7              73
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             3              25
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2B MUTATED        1      1      1      1
  DIP2B WILD-TYPE     32     30     26     18
D53V11, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2B MUTATED        1      1      2      0
  DIP2B WILD-TYPE     53      9     22     22
D53V12, multiclass
        clus
vv       DIP2B MUTATED DIP2B WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = PRRG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        0      0      0      1
  PRRG1 WILD-TYPE     46     58     64     42
D54V1, multiclass
[1] "Remove cluster labels:" "PRRG1 MUTATED"         
clus
  PRRG1 MUTATED PRRG1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        0      0      1
  PRRG1 WILD-TYPE     51     83     76
D54V2, multiclass
[1] "Remove cluster labels:" "PRRG1 MUTATED"         
clus
  PRRG1 MUTATED PRRG1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PRRG1 WILD-TYPE" "PRRG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        9      3      2      0
  PRRG1 WILD-TYPE    169    180     99     20
D54V3, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        4      1      8
  PRRG1 WILD-TYPE     83     79     92
D54V4, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        0      4      8
  PRRG1 WILD-TYPE     89    156    130
D54V5, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        7      5      0
  PRRG1 WILD-TYPE    175    128     72
D54V6, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        1      7      5      1
  PRRG1 WILD-TYPE    111     89     87    185
D54V7, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             5              87
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRRG1 MUTATED        2      2      7      0      3      0      0
  PRRG1 WILD-TYPE     58     48     42     40     60    125     99
D54V8, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        9      3      1      1
  PRRG1 WILD-TYPE    121     75     67    195
D54V9, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRRG1 MUTATED        0      5      1      1      5      0      2      0
  PRRG1 WILD-TYPE     40     57     27     79     64     48     41     28
                 vv
clus              CLUS_9
  PRRG1 MUTATED        0
  PRRG1 WILD-TYPE     74
D54V10, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        0      1      1      2
  PRRG1 WILD-TYPE     33     30     26     17
D54V11, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        1      1      2      0
  PRRG1 WILD-TYPE     53      9     22     22
D54V12, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        2      1      2      4
  PIK3R1 WILD-TYPE     44     57     62     39
D55V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              2               62
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        1      3      5
  PIK3R1 WILD-TYPE     50     80     72
D55V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              3               80
  CLUS_3              5               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED       27     15      8      0
  PIK3R1 WILD-TYPE    151    168     93     20
D55V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             27              151
  CLUS_2             15              168
  CLUS_3              8               93
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED       15     15     12
  PIK3R1 WILD-TYPE     72     65     88
D55V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             15               72
  CLUS_2             15               65
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        3     19     20
  PIK3R1 WILD-TYPE     86    141    118
D55V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2             19              141
  CLUS_3             20              118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED       18     17      7
  PIK3R1 WILD-TYPE    164    116     65
D55V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             18              164
  CLUS_2             17              116
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED       20     10     11     10
  PIK3R1 WILD-TYPE     92     86     81    176
D55V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             20               92
  CLUS_2             10               86
  CLUS_3             11               81
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3R1 MUTATED       12      6     13      5      6      4      5
  PIK3R1 WILD-TYPE     48     44     36     35     57    121     94
D55V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             12               48
  CLUS_2              6               44
  CLUS_3             13               36
  CLUS_4              5               35
  CLUS_5              6               57
  CLUS_6              4              121
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED       24      7      6     14
  PIK3R1 WILD-TYPE    106     71     62    182
D55V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             24              106
  CLUS_2              7               71
  CLUS_3              6               62
  CLUS_4             14              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3R1 MUTATED        5     10      5     12      7      4      6      1
  PIK3R1 WILD-TYPE     35     52     23     68     62     44     37     27
                  vv
clus               CLUS_9
  PIK3R1 MUTATED        1
  PIK3R1 WILD-TYPE     73
D55V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               35
  CLUS_2             10               52
  CLUS_3              5               23
  CLUS_4             12               68
  CLUS_5              7               62
  CLUS_6              4               44
  CLUS_7              6               37
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        4      3      3      3
  PIK3R1 WILD-TYPE     29     28     24     16
D55V11, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              3               28
  CLUS_3              3               24
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        4      1      4      4
  PIK3R1 WILD-TYPE     50      9     20     18
D55V12, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              4               20
  CLUS_4              4               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = PCBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP1 MUTATED        1      1      1      3
  PCBP1 WILD-TYPE     45     57     63     40
D56V1, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP1 MUTATED        1      1      4
  PCBP1 WILD-TYPE     50     82     73
D56V2, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP1 MUTATED       10      5      0      0
  PCBP1 WILD-TYPE    168    178    101     20
D56V3, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP1 MUTATED        3      2      4
  PCBP1 WILD-TYPE     84     78     96
D56V4, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP1 MUTATED        1      4      4
  PCBP1 WILD-TYPE     88    156    134
D56V5, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP1 MUTATED        4      5      0
  PCBP1 WILD-TYPE    178    128     72
D56V6, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP1 MUTATED        1      5      3      6
  PCBP1 WILD-TYPE    111     91     89    180
D56V7, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCBP1 MUTATED        1      3      1      4      1      2      3
  PCBP1 WILD-TYPE     59     47     48     36     62    123     96
D56V8, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             1              48
  CLUS_4             4              36
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP1 MUTATED        6      1      3      4
  PCBP1 WILD-TYPE    124     77     65    192
D56V9, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCBP1 MUTATED        4      2      0      0      1      1      3      1
  PCBP1 WILD-TYPE     36     60     28     80     68     47     40     27
                 vv
clus              CLUS_9
  PCBP1 MUTATED        2
  PCBP1 WILD-TYPE     72
D56V10, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP1 MUTATED        1      1      1      1
  PCBP1 WILD-TYPE     32     30     26     18
D56V11, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP1 MUTATED        3      0      1      0
  PCBP1 WILD-TYPE     51     10     23     22
D56V12, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = IFT57 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT57 MUTATED        0      1      0      1
  IFT57 WILD-TYPE     46     57     64     42
D57V1, multiclass
[1] "Remove cluster labels:" "IFT57 MUTATED"         
clus
  IFT57 MUTATED IFT57 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3878 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AY-4071 
"IFT57 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFT57 MUTATED        1      0      1
  IFT57 WILD-TYPE     50     83     76
D57V2, multiclass
[1] "Remove cluster labels:" "IFT57 MUTATED"         
clus
  IFT57 MUTATED IFT57 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3878 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AY-4071 
"IFT57 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT57 MUTATED        8      4      1      0
  IFT57 WILD-TYPE    170    179    100     20
D57V3, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFT57 MUTATED        4      2      5
  IFT57 WILD-TYPE     83     78     95
D57V4, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFT57 MUTATED        1      4      7
  IFT57 WILD-TYPE     88    156    131
D57V5, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFT57 MUTATED        7      4      1
  IFT57 WILD-TYPE    175    129     71
D57V6, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT57 MUTATED        2      7      2      2
  IFT57 WILD-TYPE    110     89     90    184
D57V7, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFT57 MUTATED        1      3      5      1      1      1      1
  IFT57 WILD-TYPE     59     47     44     39     62    124     98
D57V8, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT57 MUTATED        6      1      1      4
  IFT57 WILD-TYPE    124     77     67    192
D57V9, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFT57 MUTATED        1      2      1      2      4      0      1      0
  IFT57 WILD-TYPE     39     60     27     78     65     48     42     28
                 vv
clus              CLUS_9
  IFT57 MUTATED        1
  IFT57 WILD-TYPE     73
D57V10, multiclass
        clus
vv       IFT57 MUTATED IFT57 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT57 MUTATED        0      0      0      2
  IFT57 WILD-TYPE     33     31     27     17
D57V11, multiclass
[1] "Remove cluster labels:" "IFT57 MUTATED"         
clus
  IFT57 MUTATED IFT57 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFT57 MUTATED        0      0      2      0
  IFT57 WILD-TYPE     54     10     22     22
D57V12, multiclass
[1] "Remove cluster labels:" "IFT57 MUTATED"         
clus
  IFT57 MUTATED IFT57 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" "IFT57 WILD-TYPE" 

Clustering(58) Variable = RSPH3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPH3 MUTATED        0      0      0      1
  RSPH3 WILD-TYPE     46     58     64     42
D58V1, multiclass
[1] "Remove cluster labels:" "RSPH3 MUTATED"         
clus
  RSPH3 MUTATED RSPH3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPH3 MUTATED        0      1      0
  RSPH3 WILD-TYPE     51     82     77
D58V2, multiclass
[1] "Remove cluster labels:" "RSPH3 MUTATED"         
clus
  RSPH3 MUTATED RSPH3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RSPH3 WILD-TYPE" "RSPH3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPH3 MUTATED        7      2      2      0
  RSPH3 WILD-TYPE    171    181     99     20
D58V3, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPH3 MUTATED        2      1      7
  RSPH3 WILD-TYPE     85     79     93
D58V4, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPH3 MUTATED        0      6      3
  RSPH3 WILD-TYPE     89    154    135
D58V5, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPH3 MUTATED        4      4      1
  RSPH3 WILD-TYPE    178    129     71
D58V6, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPH3 MUTATED        3      4      3      1
  RSPH3 WILD-TYPE    109     92     89    185
D58V7, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RSPH3 MUTATED        4      1      5      0      0      0      1
  RSPH3 WILD-TYPE     56     49     44     40     63    125     98
D58V8, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPH3 MUTATED        5      3      1      2
  RSPH3 WILD-TYPE    125     75     67    194
D58V9, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RSPH3 MUTATED        0      2      1      4      3      0      1      0
  RSPH3 WILD-TYPE     40     60     27     76     66     48     42     28
                 vv
clus              CLUS_9
  RSPH3 MUTATED        0
  RSPH3 WILD-TYPE     74
D58V10, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPH3 MUTATED        0      0      2      4
  RSPH3 WILD-TYPE     33     31     25     15
D58V11, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPH3 MUTATED        1      0      5      0
  RSPH3 WILD-TYPE     53     10     19     22
D58V12, multiclass
        clus
vv       RSPH3 MUTATED RSPH3 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = RLIM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        1      0      1      1
  RLIM WILD-TYPE     45     58     63     42
D59V1, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        1      0      2
  RLIM WILD-TYPE     50     83     75
D59V2, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        7      6      3      2
  RLIM WILD-TYPE    171    177     98     18
D59V3, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            7            171
  CLUS_2            6            177
  CLUS_3            3             98
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        4      4      7
  RLIM WILD-TYPE     83     76     93
D59V4, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        3      6      7
  RLIM WILD-TYPE     86    154    131
D59V5, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RLIM MUTATED        8      5      3
  RLIM WILD-TYPE    174    128     69
D59V6, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            8            174
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        4      5      5      4
  RLIM WILD-TYPE    108     91     87    182
D59V7, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            4            108
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RLIM MUTATED        5      2      3      2      3      2      1
  RLIM WILD-TYPE     55     48     46     38     60    123     98
D59V8, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            5             55
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        9      3      2      4
  RLIM WILD-TYPE    121     75     66    192
D59V9, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            9            121
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RLIM MUTATED        2      1      2      4      4      1      4      0      0
  RLIM WILD-TYPE     38     61     26     76     65     47     39     28     74
D59V10, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        1      3      1      1
  RLIM WILD-TYPE     32     28     26     18
D59V11, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             28
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RLIM MUTATED        3      1      1      1
  RLIM WILD-TYPE     51      9     23     21
D59V12, multiclass
        clus
vv       RLIM MUTATED RLIM WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = ROS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROS1 MUTATED        4      2      0      6
  ROS1 WILD-TYPE     42     56     64     37
D60V1, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            2             56
  CLUS_3            0             64
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROS1 MUTATED        7      3      2
  ROS1 WILD-TYPE     44     80     75
D60V2, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROS1 MUTATED       32     11      8      3
  ROS1 WILD-TYPE    146    172     93     17
D60V3, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1           32            146
  CLUS_2           11            172
  CLUS_3            8             93
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROS1 MUTATED       16      7     17
  ROS1 WILD-TYPE     71     73     83
D60V4, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1           16             71
  CLUS_2            7             73
  CLUS_3           17             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROS1 MUTATED        4     16     23
  ROS1 WILD-TYPE     85    144    115
D60V5, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2           16            144
  CLUS_3           23            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROS1 MUTATED       24     15      4
  ROS1 WILD-TYPE    158    118     68
D60V6, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1           24            158
  CLUS_2           15            118
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROS1 MUTATED       11     14     15     14
  ROS1 WILD-TYPE    101     82     77    172
D60V7, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1           11            101
  CLUS_2           14             82
  CLUS_3           15             77
  CLUS_4           14            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ROS1 MUTATED        8      7     16      3      7      3     10
  ROS1 WILD-TYPE     52     43     33     37     56    122     89
D60V8, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            8             52
  CLUS_2            7             43
  CLUS_3           16             33
  CLUS_4            3             37
  CLUS_5            7             56
  CLUS_6            3            122
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROS1 MUTATED       26      8      5     14
  ROS1 WILD-TYPE    104     70     63    182
D60V9, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1           26            104
  CLUS_2            8             70
  CLUS_3            5             63
  CLUS_4           14            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ROS1 MUTATED        7     10      3      7     14      3      5      1      3
  ROS1 WILD-TYPE     33     52     25     73     55     45     38     27     71
D60V10, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            7             33
  CLUS_2           10             52
  CLUS_3            3             25
  CLUS_4            7             73
  CLUS_5           14             55
  CLUS_6            3             45
  CLUS_7            5             38
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROS1 MUTATED        3      4      3      5
  ROS1 WILD-TYPE     30     27     24     14
D60V11, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            4             27
  CLUS_3            3             24
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROS1 MUTATED        9      2      2      2
  ROS1 WILD-TYPE     45      8     22     20
D60V12, multiclass
        clus
vv       ROS1 MUTATED ROS1 WILD-TYPE
  CLUS_1            9             45
  CLUS_2            2              8
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = MPHOSPH10 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH10 MUTATED        1      0      0      1
  MPHOSPH10 WILD-TYPE     45     58     64     42
D61V1, multiclass
[1] "Remove cluster labels:" "MPHOSPH10 MUTATED"     
clus
  MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-3994 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00L          TCGA-AA-A00N          TCGA-AA-A00O 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00Q          TCGA-AA-A00R          TCGA-AA-A00U 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00W          TCGA-AA-A00Z          TCGA-AA-A010 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A017          TCGA-AA-A01D          TCGA-AA-A01F 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01I          TCGA-AA-A01K 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A024          TCGA-AA-A029 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AF-2689          TCGA-AF-2691 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3574          TCGA-AG-3575          TCGA-AG-3578 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3608          TCGA-AG-3609          TCGA-AG-3611 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3612          TCGA-AG-3726          TCGA-AG-3727 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3881          TCGA-AG-3882 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3883          TCGA-AG-3885          TCGA-AG-3887 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3890          TCGA-AG-3892          TCGA-AG-3893 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3896          TCGA-AG-3898 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-3909 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4005 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-4015 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  MPHOSPH10 MUTATED        0      1      1
  MPHOSPH10 WILD-TYPE     51     82     76
D61V2, multiclass
[1] "Remove cluster labels:" "MPHOSPH10 MUTATED"     
clus
  MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-3994 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00L          TCGA-AA-A00N          TCGA-AA-A00O 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00Q          TCGA-AA-A00R          TCGA-AA-A00U 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A00W          TCGA-AA-A00Z          TCGA-AA-A010 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A017          TCGA-AA-A01D          TCGA-AA-A01F 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01I          TCGA-AA-A01K 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A024          TCGA-AA-A029 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AF-2689          TCGA-AF-2691 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3574          TCGA-AG-3575          TCGA-AG-3578 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3608          TCGA-AG-3609          TCGA-AG-3611 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3612          TCGA-AG-3726          TCGA-AG-3727 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3881          TCGA-AG-3882 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3883          TCGA-AG-3885          TCGA-AG-3887 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3890          TCGA-AG-3892          TCGA-AG-3893 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3896          TCGA-AG-3898 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-3909 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4005 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-4015 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"MPHOSPH10 WILD-TYPE" "MPHOSPH10 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH10 MUTATED       15      0      2      1
  MPHOSPH10 WILD-TYPE    163    183     99     19
D61V3, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                15                 163
  CLUS_2                 0                 183
  CLUS_3                 2                  99
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  MPHOSPH10 MUTATED        9      0      7
  MPHOSPH10 WILD-TYPE     78     80     93
D61V4, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 9                  78
  CLUS_2                 0                  80
  CLUS_3                 7                  93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  MPHOSPH10 MUTATED        1      3      9
  MPHOSPH10 WILD-TYPE     88    157    129
D61V5, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 1                  88
  CLUS_2                 3                 157
  CLUS_3                 9                 129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  MPHOSPH10 MUTATED        8      4      1
  MPHOSPH10 WILD-TYPE    174    129     71
D61V6, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 8                 174
  CLUS_2                 4                 129
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH10 MUTATED        2      6      8      2
  MPHOSPH10 WILD-TYPE    110     90     84    184
D61V7, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 6                  90
  CLUS_3                 8                  84
  CLUS_4                 2                 184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MPHOSPH10 MUTATED        1      3      9      0      3      2      0
  MPHOSPH10 WILD-TYPE     59     47     40     40     60    123     99
D61V8, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 3                  47
  CLUS_3                 9                  40
  CLUS_4                 0                  40
  CLUS_5                 3                  60
  CLUS_6                 2                 123
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH10 MUTATED        7      6      0      4
  MPHOSPH10 WILD-TYPE    123     72     68    192
D61V9, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 7                 123
  CLUS_2                 6                  72
  CLUS_3                 0                  68
  CLUS_4                 4                 192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MPHOSPH10 MUTATED        4      5      0      5      2      0      0      0
  MPHOSPH10 WILD-TYPE     36     57     28     75     67     48     43     28
                     vv
clus                  CLUS_9
  MPHOSPH10 MUTATED        1
  MPHOSPH10 WILD-TYPE     73
D61V10, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 4                  36
  CLUS_2                 5                  57
  CLUS_3                 0                  28
  CLUS_4                 5                  75
  CLUS_5                 2                  67
  CLUS_6                 0                  48
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH10 MUTATED        4      1      0      2
  MPHOSPH10 WILD-TYPE     29     30     27     17
D61V11, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 4                  29
  CLUS_2                 1                  30
  CLUS_3                 0                  27
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH10 MUTATED        6      0      1      0
  MPHOSPH10 WILD-TYPE     48     10     23     22
D61V12, multiclass
        clus
vv       MPHOSPH10 MUTATED MPHOSPH10 WILD-TYPE
  CLUS_1                 6                  48
  CLUS_2                 0                  10
  CLUS_3                 1                  23
  CLUS_4                 0                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = VCX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX2 MUTATED        0      0      0      0
  VCX2 WILD-TYPE     46     58     64     43
D62V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCX2 MUTATED        0      0      0
  VCX2 WILD-TYPE     51     83     77
D62V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX2 MUTATED        2      7      2      1
  VCX2 WILD-TYPE    176    176     99     19
D62V3, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            7            176
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCX2 MUTATED        5      6      1
  VCX2 WILD-TYPE     82     74     99
D62V4, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            6             74
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCX2 MUTATED        2      5      4
  VCX2 WILD-TYPE     87    155    134
D62V5, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCX2 MUTATED        7      3      1
  VCX2 WILD-TYPE    175    130     71
D62V6, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX2 MUTATED        6      3      3      0
  VCX2 WILD-TYPE    106     93     89    186
D62V7, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VCX2 MUTATED        3      2      1      2      4      0      0
  VCX2 WILD-TYPE     57     48     48     38     59    125     99
D62V8, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX2 MUTATED        4      6      2      0
  VCX2 WILD-TYPE    126     72     66    196
D62V9, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VCX2 MUTATED        0      2      2      3      0      1      3      1      0
  VCX2 WILD-TYPE     40     60     26     77     69     47     40     27     74
D62V10, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            0             69
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX2 MUTATED        2      3      3      0
  VCX2 WILD-TYPE     31     28     24     19
D62V11, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             28
  CLUS_3            3             24
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX2 MUTATED        3      1      1      3
  VCX2 WILD-TYPE     51      9     23     19
D62V12, multiclass
        clus
vv       VCX2 MUTATED VCX2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = C2ORF29 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF29 MUTATED        0      0      0      1
  C2ORF29 WILD-TYPE     46     58     64     42
D63V1, multiclass
[1] "Remove cluster labels:" "C2ORF29 MUTATED"       
clus
  C2ORF29 MUTATED C2ORF29 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF29 MUTATED        0      1      0
  C2ORF29 WILD-TYPE     51     82     77
D63V2, multiclass
[1] "Remove cluster labels:" "C2ORF29 MUTATED"       
clus
  C2ORF29 MUTATED C2ORF29 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C2ORF29 WILD-TYPE" "C2ORF29 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF29 MUTATED        9      7      3      0
  C2ORF29 WILD-TYPE    169    176     98     20
D63V3, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               7               176
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF29 MUTATED        8      1      9
  C2ORF29 WILD-TYPE     79     79     91
D63V4, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               8                79
  CLUS_2               1                79
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF29 MUTATED        1      9      6
  C2ORF29 WILD-TYPE     88    151    132
D63V5, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               9               151
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF29 MUTATED        7      5      4
  C2ORF29 WILD-TYPE    175    128     68
D63V6, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               5               128
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF29 MUTATED        5      7      6      1
  C2ORF29 WILD-TYPE    107     89     86    185
D63V7, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               5               107
  CLUS_2               7                89
  CLUS_3               6                86
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C2ORF29 MUTATED        5      4      5      1      3      0      1
  C2ORF29 WILD-TYPE     55     46     44     39     60    125     98
D63V8, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               4                46
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF29 MUTATED       14      3      1      1
  C2ORF29 WILD-TYPE    116     75     67    195
D63V9, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1              14               116
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C2ORF29 MUTATED        3      2      2      3      4      3      2      0
  C2ORF29 WILD-TYPE     37     60     26     77     65     45     41     28
                   vv
clus                CLUS_9
  C2ORF29 MUTATED        0
  C2ORF29 WILD-TYPE     74
D63V10, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               4                65
  CLUS_6               3                45
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF29 MUTATED        1      1      0      2
  C2ORF29 WILD-TYPE     32     30     27     17
D63V11, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF29 MUTATED        1      0      2      1
  C2ORF29 WILD-TYPE     53     10     22     21
D63V12, multiclass
        clus
vv       C2ORF29 MUTATED C2ORF29 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DDX26B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        1      1      0      0
  DDX26B WILD-TYPE     45     57     64     43
D64V1, multiclass
[1] "Remove cluster labels:" "DDX26B MUTATED"        
clus
  DDX26B MUTATED DDX26B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AY-4071 
"DDX26B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DDX26B MUTATED        1      1      0
  DDX26B WILD-TYPE     50     82     77
D64V2, multiclass
[1] "Remove cluster labels:" "DDX26B MUTATED"        
clus
  DDX26B MUTATED DDX26B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" "DDX26B WILD-TYPE" 
      TCGA-AY-4071 
"DDX26B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED       15      0      0      1
  DDX26B WILD-TYPE    163    183    101     19
D64V3, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1             15              163
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DDX26B MUTATED        5      0      9
  DDX26B WILD-TYPE     82     80     91
D64V4, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DDX26B MUTATED        2      2     10
  DDX26B WILD-TYPE     87    158    128
D64V5, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              2               87
  CLUS_2              2              158
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DDX26B MUTATED       10      3      1
  DDX26B WILD-TYPE    172    130     71
D64V6, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1             10              172
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        0      6      8      2
  DDX26B WILD-TYPE    112     90     84    184
D64V7, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              8               84
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX26B MUTATED        1      2      9      1      1      1      1
  DDX26B WILD-TYPE     59     48     40     39     62    124     98
D64V8, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              9               40
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED       10      2      0      4
  DDX26B WILD-TYPE    120     76     68    192
D64V9, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1             10              120
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX26B MUTATED        2      6      0      1      5      0      1      0
  DDX26B WILD-TYPE     38     56     28     79     64     48     42     28
                  vv
clus               CLUS_9
  DDX26B MUTATED        1
  DDX26B WILD-TYPE     73
D64V10, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        1      0      0      3
  DDX26B WILD-TYPE     32     31     27     16
D64V11, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        4      0      0      0
  DDX26B WILD-TYPE     50     10     24     22
D64V12, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = RBPJ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        2      1      0      2
  RBPJ WILD-TYPE     44     57     64     41
D65V1, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        2      1      2
  RBPJ WILD-TYPE     49     82     75
D65V2, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED       12      5      0      0
  RBPJ WILD-TYPE    166    178    101     20
D65V3, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1           12            166
  CLUS_2            5            178
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        3      5      6
  RBPJ WILD-TYPE     84     75     94
D65V4, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            3             84
  CLUS_2            5             75
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        2      8      7
  RBPJ WILD-TYPE     87    152    131
D65V5, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            2             87
  CLUS_2            8            152
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBPJ MUTATED        8      6      3
  RBPJ WILD-TYPE    174    127     69
D65V6, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            8            174
  CLUS_2            6            127
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        5      3      5      5
  RBPJ WILD-TYPE    107     93     87    181
D65V7, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            5            107
  CLUS_2            3             93
  CLUS_3            5             87
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBPJ MUTATED        4      3      4      0      3      1      3
  RBPJ WILD-TYPE     56     47     45     40     60    124     96
D65V8, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            4             56
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        5      6      2      5
  RBPJ WILD-TYPE    125     72     66    191
D65V9, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            5            125
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBPJ MUTATED        5      4      1      1      3      1      2      0      1
  RBPJ WILD-TYPE     35     58     27     79     66     47     41     28     73
D65V10, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            5             35
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        4      1      1      2
  RBPJ WILD-TYPE     29     30     26     17
D65V11, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPJ MUTATED        5      1      2      0
  RBPJ WILD-TYPE     49      9     22     22
D65V12, multiclass
        clus
vv       RBPJ MUTATED RBPJ WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        9      4      5     11
  SMAD4 WILD-TYPE     37     54     59     32
D66V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             9              37
  CLUS_2             4              54
  CLUS_3             5              59
  CLUS_4            11              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       11      6     12
  SMAD4 WILD-TYPE     40     77     65
D66V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            11              40
  CLUS_2             6              77
  CLUS_3            12              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       58     49     30      6
  SMAD4 WILD-TYPE    120    134     71     14
D66V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            58             120
  CLUS_2            49             134
  CLUS_3            30              71
  CLUS_4             6              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       44     31     40
  SMAD4 WILD-TYPE     43     49     60
D66V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            44              43
  CLUS_2            31              49
  CLUS_3            40              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       23     51     50
  SMAD4 WILD-TYPE     66    109     88
D66V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            23              66
  CLUS_2            51             109
  CLUS_3            50              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       73     35     16
  SMAD4 WILD-TYPE    109     98     56
D66V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            73             109
  CLUS_2            35              98
  CLUS_3            16              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       43     30     43     27
  SMAD4 WILD-TYPE     69     66     49    159
D66V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            43              69
  CLUS_2            30              66
  CLUS_3            43              49
  CLUS_4            27             159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD4 MUTATED       24     21     21     16     29     10     22
  SMAD4 WILD-TYPE     36     29     28     24     34    115     77
D66V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            24              36
  CLUS_2            21              29
  CLUS_3            21              28
  CLUS_4            16              24
  CLUS_5            29              34
  CLUS_6            10             115
  CLUS_7            22              77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       57     38     18     30
  SMAD4 WILD-TYPE     73     40     50    166
D66V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            57              73
  CLUS_2            38              40
  CLUS_3            18              50
  CLUS_4            30             166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMAD4 MUTATED       19     32      8     21     18     14     19      3
  SMAD4 WILD-TYPE     21     30     20     59     51     34     24     25
                 vv
clus              CLUS_9
  SMAD4 MUTATED        9
  SMAD4 WILD-TYPE     65
D66V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            19              21
  CLUS_2            32              30
  CLUS_3             8              20
  CLUS_4            21              59
  CLUS_5            18              51
  CLUS_6            14              34
  CLUS_7            19              24
  CLUS_8             3              25
  CLUS_9             9              65
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       15     17      6     10
  SMAD4 WILD-TYPE     18     14     21      9
D66V11, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            15              18
  CLUS_2            17              14
  CLUS_3             6              21
  CLUS_4            10               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       30      5      6      7
  SMAD4 WILD-TYPE     24      5     18     15
D66V12, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            30              24
  CLUS_2             5               5
  CLUS_3             6              18
  CLUS_4             7              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = SLC26A8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        3      0      0      2
  SLC26A8 WILD-TYPE     43     58     64     41
D67V1, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A8 MUTATED        2      2      1
  SLC26A8 WILD-TYPE     49     81     76
D67V2, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED       17      1      1      0
  SLC26A8 WILD-TYPE    161    182    100     20
D67V3, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1              17               161
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A8 MUTATED        5      2      7
  SLC26A8 WILD-TYPE     82     78     93
D67V4, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A8 MUTATED        3      8      7
  SLC26A8 WILD-TYPE     86    152    131
D67V5, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               8               152
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A8 MUTATED        8      8      2
  SLC26A8 WILD-TYPE    174    125     70
D67V6, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               8               125
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        4      6      3      6
  SLC26A8 WILD-TYPE    108     90     89    180
D67V7, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               6                90
  CLUS_3               3                89
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC26A8 MUTATED        2      2      7      0      3      1      4
  SLC26A8 WILD-TYPE     58     48     42     40     60    124     95
D67V8, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               7                42
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        6      4      1      7
  SLC26A8 WILD-TYPE    124     74     67    189
D67V9, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC26A8 MUTATED        2      3      1      3      6      1      1      0
  SLC26A8 WILD-TYPE     38     59     27     77     63     47     42     28
                   vv
clus                CLUS_9
  SLC26A8 MUTATED        1
  SLC26A8 WILD-TYPE     73
D67V10, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        1      2      2      1
  SLC26A8 WILD-TYPE     32     29     25     18
D67V11, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               2                25
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        2      1      2      1
  SLC26A8 WILD-TYPE     52      9     22     21
D67V12, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = RBBP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP7 MUTATED        0      0      0      6
  RBBP7 WILD-TYPE     46     58     64     37
D68V1, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP7 MUTATED        4      1      1
  RBBP7 WILD-TYPE     47     82     76
D68V2, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP7 MUTATED       12      3      2      0
  RBBP7 WILD-TYPE    166    180     99     20
D68V3, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP7 MUTATED        3      1      7
  RBBP7 WILD-TYPE     84     79     93
D68V4, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP7 MUTATED        2      4      9
  RBBP7 WILD-TYPE     87    156    129
D68V5, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBBP7 MUTATED        8      5      2
  RBBP7 WILD-TYPE    174    128     70
D68V6, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP7 MUTATED        2      4      4      7
  RBBP7 WILD-TYPE    110     92     88    179
D68V7, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBBP7 MUTATED        2      3      4      0      2      1      5
  RBBP7 WILD-TYPE     58     47     45     40     61    124     94
D68V8, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP7 MUTATED        8      2      0      5
  RBBP7 WILD-TYPE    122     76     68    191
D68V9, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBBP7 MUTATED        1      4      1      2      3      1      0      1
  RBBP7 WILD-TYPE     39     58     27     78     66     47     43     27
                 vv
clus              CLUS_9
  RBBP7 MUTATED        2
  RBBP7 WILD-TYPE     72
D68V10, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP7 MUTATED        1      0      0      2
  RBBP7 WILD-TYPE     32     31     27     17
D68V11, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBBP7 MUTATED        2      0      0      1
  RBBP7 WILD-TYPE     52     10     24     21
D68V12, multiclass
        clus
vv       RBBP7 MUTATED RBBP7 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      0      1      2
  RB1 WILD-TYPE     43     58     63     41
D69V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        3      2      1
  RB1 WILD-TYPE     48     81     76
D69V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            48
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       47     30     19      5
  RB1 WILD-TYPE    131    153     82     15
D69V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          47           131
  CLUS_2          30           153
  CLUS_3          19            82
  CLUS_4           5            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       31     19     46
  RB1 WILD-TYPE     56     61     54
D69V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          31            56
  CLUS_2          19            61
  CLUS_3          46            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       15     35     38
  RB1 WILD-TYPE     74    125    100
D69V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          15            74
  CLUS_2          35           125
  CLUS_3          38           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       46     26     16
  RB1 WILD-TYPE    136    107     56
D69V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          46           136
  CLUS_2          26           107
  CLUS_3          16            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       23     40     30      9
  RB1 WILD-TYPE     89     56     62    177
D69V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          23            89
  CLUS_2          40            56
  CLUS_3          30            62
  CLUS_4           9           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RB1 MUTATED       18     23     21     13     19      3      5
  RB1 WILD-TYPE     42     27     28     27     44    122     94
D69V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          18            42
  CLUS_2          23            27
  CLUS_3          21            28
  CLUS_4          13            27
  CLUS_5          19            44
  CLUS_6           3           122
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       57     22     10     13
  RB1 WILD-TYPE     73     56     58    183
D69V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          57            73
  CLUS_2          22            56
  CLUS_3          10            58
  CLUS_4          13           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RB1 MUTATED       20     18      8     17     14      4     15      3      3
  RB1 WILD-TYPE     20     44     20     63     55     44     28     25     71
D69V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          20            20
  CLUS_2          18            44
  CLUS_3           8            20
  CLUS_4          17            63
  CLUS_5          14            55
  CLUS_6           4            44
  CLUS_7          15            28
  CLUS_8           3            25
  CLUS_9           3            71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        9      8      8      5
  RB1 WILD-TYPE     24     23     19     14
D69V11, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           9            24
  CLUS_2           8            23
  CLUS_3           8            19
  CLUS_4           5            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       16      3      7      4
  RB1 WILD-TYPE     38      7     17     18
D69V12, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          16            38
  CLUS_2           3             7
  CLUS_3           7            17
  CLUS_4           4            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = L1TD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1TD1 MUTATED        2      0      0      5
  L1TD1 WILD-TYPE     44     58     64     38
D70V1, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1TD1 MUTATED        4      2      1
  L1TD1 WILD-TYPE     47     81     76
D70V2, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1TD1 MUTATED       14      2      4      0
  L1TD1 WILD-TYPE    164    181     97     20
D70V3, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             2             181
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1TD1 MUTATED        8      1      5
  L1TD1 WILD-TYPE     79     79     95
D70V4, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1TD1 MUTATED        2      9      4
  L1TD1 WILD-TYPE     87    151    134
D70V5, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  L1TD1 MUTATED        6      6      3
  L1TD1 WILD-TYPE    176    127     69
D70V6, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1TD1 MUTATED        2      8      3      7
  L1TD1 WILD-TYPE    110     88     89    179
D70V7, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  L1TD1 MUTATED        3      0      6      2      2      1      6
  L1TD1 WILD-TYPE     57     50     43     38     61    124     93
D70V8, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1TD1 MUTATED        4      5      1      9
  L1TD1 WILD-TYPE    126     73     67    187
D70V9, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  L1TD1 MUTATED        0      5      1      3      7      2      0      0
  L1TD1 WILD-TYPE     40     57     27     77     62     46     43     28
                 vv
clus              CLUS_9
  L1TD1 MUTATED        1
  L1TD1 WILD-TYPE     73
D70V10, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             7              62
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1TD1 MUTATED        1      1      2      1
  L1TD1 WILD-TYPE     32     30     25     18
D70V11, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  L1TD1 MUTATED        2      1      2      0
  L1TD1 WILD-TYPE     52      9     22     22
D70V12, multiclass
        clus
vv       L1TD1 MUTATED L1TD1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = TOP2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2B MUTATED        1      0      1      3
  TOP2B WILD-TYPE     45     58     63     40
D71V1, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2B MUTATED        2      1      2
  TOP2B WILD-TYPE     49     82     75
D71V2, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2B MUTATED       21      3      0      0
  TOP2B WILD-TYPE    157    180    101     20
D71V3, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1            21             157
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2B MUTATED        5      4      9
  TOP2B WILD-TYPE     82     76     91
D71V4, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4              76
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2B MUTATED        2     11      9
  TOP2B WILD-TYPE     87    149    129
D71V5, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             2              87
  CLUS_2            11             149
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2B MUTATED        9     10      3
  TOP2B WILD-TYPE    173    123     69
D71V6, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             9             173
  CLUS_2            10             123
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2B MUTATED        3     11      4      7
  TOP2B WILD-TYPE    109     85     88    179
D71V7, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             3             109
  CLUS_2            11              85
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOP2B MUTATED        4      2     10      1      1      1      6
  TOP2B WILD-TYPE     56     48     39     39     62    124     93
D71V8, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3            10              39
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2B MUTATED       16      0      0      9
  TOP2B WILD-TYPE    114     78     68    187
D71V9, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1            16             114
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TOP2B MUTATED        2      3      3      0      9      2      3      0
  TOP2B WILD-TYPE     38     59     25     80     60     46     40     28
                 vv
clus              CLUS_9
  TOP2B MUTATED        3
  TOP2B WILD-TYPE     71
D71V10, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             9              60
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2B MUTATED        1      0      0      4
  TOP2B WILD-TYPE     32     31     27     15
D71V11, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2B MUTATED        2      0      3      0
  TOP2B WILD-TYPE     52     10     21     22
D71V12, multiclass
        clus
vv       TOP2B MUTATED TOP2B WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DCLK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLK2 MUTATED        4      0      0      2
  DCLK2 WILD-TYPE     42     58     64     41
D72V1, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCLK2 MUTATED        3      2      1
  DCLK2 WILD-TYPE     48     81     76
D72V2, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLK2 MUTATED        8      4      2      1
  DCLK2 WILD-TYPE    170    179     99     19
D72V3, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCLK2 MUTATED        4      3      3
  DCLK2 WILD-TYPE     83     77     97
D72V4, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCLK2 MUTATED        0      3      9
  DCLK2 WILD-TYPE     89    157    129
D72V5, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCLK2 MUTATED        7      3      2
  DCLK2 WILD-TYPE    175    130     70
D72V6, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLK2 MUTATED        2      5      3      6
  DCLK2 WILD-TYPE    110     91     89    180
D72V7, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCLK2 MUTATED        2      3      3      1      2      2      3
  DCLK2 WILD-TYPE     58     47     46     39     61    123     96
D72V8, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLK2 MUTATED        4      4      1      7
  DCLK2 WILD-TYPE    126     74     67    189
D72V9, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCLK2 MUTATED        1      4      1      1      5      1      1      0
  DCLK2 WILD-TYPE     39     58     27     79     64     47     42     28
                 vv
clus              CLUS_9
  DCLK2 MUTATED        2
  DCLK2 WILD-TYPE     72
D72V10, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLK2 MUTATED        1      0      1      1
  DCLK2 WILD-TYPE     32     31     26     18
D72V11, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLK2 MUTATED        1      0      1      1
  DCLK2 WILD-TYPE     53     10     23     21
D72V12, multiclass
        clus
vv       DCLK2 MUTATED DCLK2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = FKBP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        1      0      0      4
  FKBP9 WILD-TYPE     45     58     64     39
D73V1, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        3      1      1
  FKBP9 WILD-TYPE     48     82     76
D73V2, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED       15      1      2      1
  FKBP9 WILD-TYPE    163    182     99     19
D73V3, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        6      1      7
  FKBP9 WILD-TYPE     81     79     93
D73V4, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        1      5      9
  FKBP9 WILD-TYPE     88    155    129
D73V5, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        8      5      2
  FKBP9 WILD-TYPE    174    128     70
D73V6, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        3      7      4      5
  FKBP9 WILD-TYPE    109     89     88    181
D73V7, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FKBP9 MUTATED        3      2      7      2      1      0      4
  FKBP9 WILD-TYPE     57     48     42     38     62    125     95
D73V8, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        8      2      1      6
  FKBP9 WILD-TYPE    122     76     67    190
D73V9, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FKBP9 MUTATED        1      3      1      4      5      0      2      0
  FKBP9 WILD-TYPE     39     59     27     76     64     48     41     28
                 vv
clus              CLUS_9
  FKBP9 MUTATED        1
  FKBP9 WILD-TYPE     73
D73V10, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        1      0      1      3
  FKBP9 WILD-TYPE     32     31     26     16
D73V11, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        3      0      1      1
  FKBP9 WILD-TYPE     51     10     23     21
D73V12, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        5      0      2      5
  PTEN WILD-TYPE     41     58     62     38
D74V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      2      4
  PTEN WILD-TYPE     45     81     73
D74V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       80     61     36      7
  PTEN WILD-TYPE     98    122     65     13
D74V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           80             98
  CLUS_2           61            122
  CLUS_3           36             65
  CLUS_4            7             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       51     53     70
  PTEN WILD-TYPE     36     27     30
D74V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           51             36
  CLUS_2           53             27
  CLUS_3           70             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       25     65     69
  PTEN WILD-TYPE     64     95     69
D74V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           25             64
  CLUS_2           65             95
  CLUS_3           69             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       86     56     17
  PTEN WILD-TYPE     96     77     55
D74V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           86             96
  CLUS_2           56             77
  CLUS_3           17             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       62     57     55     12
  PTEN WILD-TYPE     50     39     37    174
D74V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           62             50
  CLUS_2           57             39
  CLUS_3           55             37
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTEN MUTATED       44     33     37     21     38      3     10
  PTEN WILD-TYPE     16     17     12     19     25    122     89
D74V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           44             16
  CLUS_2           33             17
  CLUS_3           37             12
  CLUS_4           21             19
  CLUS_5           38             25
  CLUS_6            3            122
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       99     44     27     16
  PTEN WILD-TYPE     31     34     41    180
D74V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           99             31
  CLUS_2           44             34
  CLUS_3           27             41
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PTEN MUTATED       24     42     19     24     22     16     31      4      4
  PTEN WILD-TYPE     16     20      9     56     47     32     12     24     70
D74V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           24             16
  CLUS_2           42             20
  CLUS_3           19              9
  CLUS_4           24             56
  CLUS_5           22             47
  CLUS_6           16             32
  CLUS_7           31             12
  CLUS_8            4             24
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       19     17     13     13
  PTEN WILD-TYPE     14     14     14      6
D74V11, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           19             14
  CLUS_2           17             14
  CLUS_3           13             14
  CLUS_4           13              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       32      4     15     11
  PTEN WILD-TYPE     22      6      9     11
D74V12, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           32             22
  CLUS_2            4              6
  CLUS_3           15              9
  CLUS_4           11             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = C14ORF184 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF184 MUTATED        0      0      0      0
  C14ORF184 WILD-TYPE     46     58     64     43
D75V1, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF184 MUTATED        0      0      0
  C14ORF184 WILD-TYPE     51     83     77
D75V2, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF184 MUTATED        2      1      3      1
  C14ORF184 WILD-TYPE    176    182     98     19
D75V3, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 2                 176
  CLUS_2                 1                 182
  CLUS_3                 3                  98
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF184 MUTATED        2      2      3
  C14ORF184 WILD-TYPE     85     78     97
D75V4, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 2                  85
  CLUS_2                 2                  78
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF184 MUTATED        1      1      4
  C14ORF184 WILD-TYPE     88    159    134
D75V5, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 1                  88
  CLUS_2                 1                 159
  CLUS_3                 4                 134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF184 MUTATED        4      1      1
  C14ORF184 WILD-TYPE    178    132     71
D75V6, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 4                 178
  CLUS_2                 1                 132
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF184 MUTATED        2      3      2      0
  C14ORF184 WILD-TYPE    110     93     90    186
D75V7, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 3                  93
  CLUS_3                 2                  90
  CLUS_4                 0                 186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF184 MUTATED        1      1      2      1      2      0      0
  C14ORF184 WILD-TYPE     59     49     47     39     61    125     99
D75V8, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 1                  49
  CLUS_3                 2                  47
  CLUS_4                 1                  39
  CLUS_5                 2                  61
  CLUS_6                 0                 125
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF184 MUTATED        7      0      0      0
  C14ORF184 WILD-TYPE    123     78     68    196
D75V9, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 7                 123
  CLUS_2                 0                  78
  CLUS_3                 0                  68
  CLUS_4                 0                 196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF184 MUTATED        2      0      0      2      2      0      1      0
  C14ORF184 WILD-TYPE     38     62     28     78     67     48     42     28
                     vv
clus                  CLUS_9
  C14ORF184 MUTATED        0
  C14ORF184 WILD-TYPE     74
D75V10, multiclass
        clus
vv       C14ORF184 MUTATED C14ORF184 WILD-TYPE
  CLUS_1                 2                  38
  CLUS_2                 0                  62
  CLUS_3                 0                  28
  CLUS_4                 2                  78
  CLUS_5                 2                  67
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF184 MUTATED        0      1      0      1
  C14ORF184 WILD-TYPE     33     30     27     18
D75V11, multiclass
[1] "Remove cluster labels:" "C14ORF184 MUTATED"     
clus
  C14ORF184 MUTATED C14ORF184 WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6601 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A282          TCGA-DM-A285 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A28F          TCGA-DY-A1DC          TCGA-DY-A1DD 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EI-6506 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-EI-6507          TCGA-F4-6459          TCGA-F4-6460 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F4-6569          TCGA-F4-6570          TCGA-F4-6704 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6807          TCGA-F4-6808 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F4-6809          TCGA-F5-6464          TCGA-F5-6465 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F5-6571          TCGA-F5-6702          TCGA-F5-6811 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F5-6812          TCGA-G4-6299          TCGA-G4-6303 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-G4-6306          TCGA-G4-6309          TCGA-G4-6625 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-G4-6628          TCGA-G5-6235          TCGA-G5-6641 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF184 MUTATED        1      0      1      0
  C14ORF184 WILD-TYPE     53     10     23     22
D75V12, multiclass
[1] "Remove cluster labels:" "C14ORF184 MUTATED"     
clus
  C14ORF184 MUTATED C14ORF184 WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6601 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A282          TCGA-DM-A285 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DM-A28F          TCGA-DY-A1DC          TCGA-DY-A1DD 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EI-6506 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-EI-6507          TCGA-F4-6459          TCGA-F4-6460 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F4-6569          TCGA-F4-6570          TCGA-F4-6704 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6807          TCGA-F4-6808 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F4-6809          TCGA-F5-6464          TCGA-F5-6465 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F5-6571          TCGA-F5-6702          TCGA-F5-6811 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-F5-6812          TCGA-G4-6299          TCGA-G4-6303 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-G4-6306          TCGA-G4-6309          TCGA-G4-6625 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 
         TCGA-G4-6628          TCGA-G5-6235          TCGA-G5-6641 
"C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" "C14ORF184 WILD-TYPE" 

Clustering(76) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        2      0      0      3
  HLA-A WILD-TYPE     44     58     64     40
D76V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      0      3
  HLA-A WILD-TYPE     49     83     74
D76V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED       14      1      2      0
  HLA-A WILD-TYPE    164    182     99     20
D76V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1            14             164
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        5      0      9
  HLA-A WILD-TYPE     82     80     91
D76V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        3      5      8
  HLA-A WILD-TYPE     86    155    130
D76V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        8      5      3
  HLA-A WILD-TYPE    174    128     69
D76V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        0     12      3      4
  HLA-A WILD-TYPE    112     84     89    182
D76V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0             112
  CLUS_2            12              84
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-A MUTATED        1      4      8      2      0      1      3
  HLA-A WILD-TYPE     59     46     41     38     63    124     96
D76V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        9      2      0      8
  HLA-A WILD-TYPE    121     76     68    188
D76V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             9             121
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HLA-A MUTATED        3      2      2      1      8      0      1      0
  HLA-A WILD-TYPE     37     60     26     79     61     48     42     28
                 vv
clus              CLUS_9
  HLA-A MUTATED        2
  HLA-A WILD-TYPE     72
D76V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      0      0      2
  HLA-A WILD-TYPE     32     31     27     17
D76V11, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        2      0      1      0
  HLA-A WILD-TYPE     52     10     23     22
D76V12, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = BMPR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        7      0      0      3
  BMPR2 WILD-TYPE     39     58     64     40
D77V1, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMPR2 MUTATED        9      0      1
  BMPR2 WILD-TYPE     42     83     76
D77V2, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED       28      3      3      1
  BMPR2 WILD-TYPE    150    180     98     19
D77V3, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1            28             150
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMPR2 MUTATED        7      3     17
  BMPR2 WILD-TYPE     80     77     83
D77V4, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             3              77
  CLUS_3            17              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMPR2 MUTATED        4     14     15
  BMPR2 WILD-TYPE     85    146    123
D77V5, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            14             146
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMPR2 MUTATED       17     11      5
  BMPR2 WILD-TYPE    165    122     67
D77V6, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1            17             165
  CLUS_2            11             122
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        3     15      9      9
  BMPR2 WILD-TYPE    109     81     83    177
D77V7, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2            15              81
  CLUS_3             9              83
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BMPR2 MUTATED        2      4     18      1      2      0      9
  BMPR2 WILD-TYPE     58     46     31     39     61    125     90
D77V8, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3            18              31
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED       17      4      1     12
  BMPR2 WILD-TYPE    113     74     67    184
D77V9, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1            17             113
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BMPR2 MUTATED        4      5      2      1     16      1      3      1
  BMPR2 WILD-TYPE     36     57     26     79     53     47     40     27
                 vv
clus              CLUS_9
  BMPR2 MUTATED        1
  BMPR2 WILD-TYPE     73
D77V10, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5            16              53
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        3      0      0      5
  BMPR2 WILD-TYPE     30     31     27     14
D77V11, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        3      0      4      1
  BMPR2 WILD-TYPE     51     10     20     21
D77V12, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = FYN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED        2      0      0      3
  FYN WILD-TYPE     44     58     64     40
D78V1, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        2      2      1
  FYN WILD-TYPE     49     81     76
D78V2, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           2            49
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED       12      4      0      0
  FYN WILD-TYPE    166    179    101     20
D78V3, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1          12           166
  CLUS_2           4           179
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        4      3      4
  FYN WILD-TYPE     83     77     96
D78V4, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           4            83
  CLUS_2           3            77
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        6      4      4
  FYN WILD-TYPE     83    156    134
D78V5, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           6            83
  CLUS_2           4           156
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        6      5      3
  FYN WILD-TYPE    176    128     69
D78V6, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           6           176
  CLUS_2           5           128
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED        1      7      2      7
  FYN WILD-TYPE    111     89     90    179
D78V7, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           1           111
  CLUS_2           7            89
  CLUS_3           2            90
  CLUS_4           7           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FYN MUTATED        2      5      2      2      0      3      3
  FYN WILD-TYPE     58     45     47     38     63    122     96
D78V8, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           2            58
  CLUS_2           5            45
  CLUS_3           2            47
  CLUS_4           2            38
  CLUS_5           0            63
  CLUS_6           3           122
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED        5      4      0      8
  FYN WILD-TYPE    125     74     68    188
D78V9, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           5           125
  CLUS_2           4            74
  CLUS_3           0            68
  CLUS_4           8           188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FYN MUTATED        2      2      2      3      3      0      0      3      2
  FYN WILD-TYPE     38     60     26     77     66     48     43     25     72
D78V10, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           2            26
  CLUS_4           3            77
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           3            25
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED        1      0      1      1
  FYN WILD-TYPE     32     31     26     18
D78V11, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           1            32
  CLUS_2           0            31
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED        1      1      1      0
  FYN WILD-TYPE     53      9     23     22
D78V12, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           1            53
  CLUS_2           1             9
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = ALDH1A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH1A3 MUTATED        3      0      0      3
  ALDH1A3 WILD-TYPE     43     58     64     40
D79V1, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH1A3 MUTATED        3      1      2
  ALDH1A3 WILD-TYPE     48     82     75
D79V2, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH1A3 MUTATED       15      2      1      1
  ALDH1A3 WILD-TYPE    163    181    100     19
D79V3, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH1A3 MUTATED        8      0      5
  ALDH1A3 WILD-TYPE     79     80     95
D79V4, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               8                79
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH1A3 MUTATED        1      9      5
  ALDH1A3 WILD-TYPE     88    151    133
D79V5, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               9               151
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH1A3 MUTATED        6      7      2
  ALDH1A3 WILD-TYPE    176    126     70
D79V6, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               7               126
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH1A3 MUTATED        0      7      5      6
  ALDH1A3 WILD-TYPE    112     89     87    180
D79V7, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               7                89
  CLUS_3               5                87
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALDH1A3 MUTATED        1      3      7      1      1      1      4
  ALDH1A3 WILD-TYPE     59     47     42     39     62    124     95
D79V8, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3               7                42
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH1A3 MUTATED        7      4      0      8
  ALDH1A3 WILD-TYPE    123     74     68    188
D79V9, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               4                74
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALDH1A3 MUTATED        2      3      1      2      8      0      1      0
  ALDH1A3 WILD-TYPE     38     59     27     78     61     48     42     28
                   vv
clus                CLUS_9
  ALDH1A3 MUTATED        2
  ALDH1A3 WILD-TYPE     72
D79V10, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH1A3 MUTATED        1      1      0      3
  ALDH1A3 WILD-TYPE     32     30     27     16
D79V11, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH1A3 MUTATED        3      0      2      0
  ALDH1A3 WILD-TYPE     51     10     22     22
D79V12, multiclass
        clus
vv       ALDH1A3 MUTATED ALDH1A3 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = LARP4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        7      0      1      3
  LARP4B WILD-TYPE     39     58     63     40
D80V1, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              7               39
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        8      2      1
  LARP4B WILD-TYPE     43     81     76
D80V2, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              8               43
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED       25      3      2      0
  LARP4B WILD-TYPE    153    180     99     20
D80V3, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             25              153
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        9      1      9
  LARP4B WILD-TYPE     78     79     91
D80V4, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              9               78
  CLUS_2              1               79
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        2      7     15
  LARP4B WILD-TYPE     87    153    123
D80V5, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3             15              123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED       15      7      2
  LARP4B WILD-TYPE    167    126     70
D80V6, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             15              167
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        1     12      5     13
  LARP4B WILD-TYPE    111     84     87    173
D80V7, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              1              111
  CLUS_2             12               84
  CLUS_3              5               87
  CLUS_4             13              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LARP4B MUTATED        2      2     12      2      1      3      9
  LARP4B WILD-TYPE     58     48     37     38     62    122     90
D80V8, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3             12               37
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              3              122
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED       14      3      0     13
  LARP4B WILD-TYPE    116     75     68    183
D80V9, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             14              116
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LARP4B MUTATED        2      6      0      3     12      0      2      3
  LARP4B WILD-TYPE     38     56     28     77     57     48     41     25
                  vv
clus               CLUS_9
  LARP4B MUTATED        2
  LARP4B WILD-TYPE     72
D80V10, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5             12               57
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              3               25
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        0      0      0      3
  LARP4B WILD-TYPE     33     31     27     16
D80V11, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        1      0      2      0
  LARP4B WILD-TYPE     53     10     22     22
D80V12, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = ZDHHC7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        4      0      0      0
  ZDHHC7 WILD-TYPE     42     58     64     43
D81V1, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        3      1      0
  ZDHHC7 WILD-TYPE     48     82     77
D81V2, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        9      1      1      1
  ZDHHC7 WILD-TYPE    169    182    100     19
D81V3, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        4      0      4
  ZDHHC7 WILD-TYPE     83     80     96
D81V4, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        0      2      7
  ZDHHC7 WILD-TYPE     89    158    131
D81V5, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        5      2      2
  ZDHHC7 WILD-TYPE    177    131     70
D81V6, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        1      4      3      4
  ZDHHC7 WILD-TYPE    111     92     89    182
D81V7, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZDHHC7 MUTATED        0      4      4      0      0      1      3
  ZDHHC7 WILD-TYPE     60     46     45     40     63    124     96
D81V8, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              4               46
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        5      1      0      6
  ZDHHC7 WILD-TYPE    125     77     68    190
D81V9, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZDHHC7 MUTATED        0      2      1      3      3      0      1      1
  ZDHHC7 WILD-TYPE     40     60     27     77     66     48     42     27
                  vv
clus               CLUS_9
  ZDHHC7 MUTATED        1
  ZDHHC7 WILD-TYPE     73
D81V10, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        0      0      1      2
  ZDHHC7 WILD-TYPE     33     31     26     17
D81V11, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        1      0      2      0
  ZDHHC7 WILD-TYPE     53     10     22     22
D81V12, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = GPATCH8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        3      0      0      0
  GPATCH8 WILD-TYPE     43     58     64     43
D82V1, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED        3      0      0
  GPATCH8 WILD-TYPE     48     83     77
D82V2, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED       13      1      0      1
  GPATCH8 WILD-TYPE    165    182    101     19
D82V3, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED        5      0      7
  GPATCH8 WILD-TYPE     82     80     93
D82V4, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED        1      2     11
  GPATCH8 WILD-TYPE     88    158    127
D82V5, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED        8      3      3
  GPATCH8 WILD-TYPE    174    130     69
D82V6, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               3               130
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        0      6      6      3
  GPATCH8 WILD-TYPE    112     90     86    183
D82V7, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               6                90
  CLUS_3               6                86
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPATCH8 MUTATED        0      2      7      2      1      0      3
  GPATCH8 WILD-TYPE     60     48     42     38     62    125     96
D82V8, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               7                42
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        7      2      0      6
  GPATCH8 WILD-TYPE    123     76     68    190
D82V9, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPATCH8 MUTATED        3      4      0      0      6      0      1      0
  GPATCH8 WILD-TYPE     37     58     28     80     63     48     42     28
                   vv
clus                CLUS_9
  GPATCH8 MUTATED        1
  GPATCH8 WILD-TYPE     73
D82V10, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               4                58
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        2      0      0      4
  GPATCH8 WILD-TYPE     31     31     27     15
D82V11, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        3      0      3      0
  GPATCH8 WILD-TYPE     51     10     21     22
D82V12, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = BCORL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        3      0      0      2
  BCORL1 WILD-TYPE     43     58     64     41
D83V1, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED        3      1      1
  BCORL1 WILD-TYPE     48     82     76
D83V2, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED       19      4      2      1
  BCORL1 WILD-TYPE    159    179     99     19
D83V3, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED        7      3     12
  BCORL1 WILD-TYPE     80     77     88
D83V4, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              3               77
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED        2     13      9
  BCORL1 WILD-TYPE     87    147    129
D83V5, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2             13              147
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED       13      9      2
  BCORL1 WILD-TYPE    169    124     70
D83V6, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              9              124
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        4      8     10      5
  BCORL1 WILD-TYPE    108     88     82    181
D83V7, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              8               88
  CLUS_3             10               82
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCORL1 MUTATED        4      1     13      1      1      1      6
  BCORL1 WILD-TYPE     56     49     36     39     62    124     93
D83V8, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3             13               36
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED       12      5      1      9
  BCORL1 WILD-TYPE    118     73     67    187
D83V9, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             12              118
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BCORL1 MUTATED        3      7      2      2      7      2      1      1
  BCORL1 WILD-TYPE     37     55     26     78     62     46     42     27
                  vv
clus               CLUS_9
  BCORL1 MUTATED        2
  BCORL1 WILD-TYPE     72
D83V10, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              7               55
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        2      1      0      5
  BCORL1 WILD-TYPE     31     30     27     14
D83V11, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        4      0      3      1
  BCORL1 WILD-TYPE     50     10     21     21
D83V12, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        5      0      2      5
  SETD2 WILD-TYPE     41     58     62     38
D84V1, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        6      1      5
  SETD2 WILD-TYPE     45     82     72
D84V2, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             1              82
  CLUS_3             5              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED       32      9      4      0
  SETD2 WILD-TYPE    146    174     97     20
D84V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            32             146
  CLUS_2             9             174
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       11      2     21
  SETD2 WILD-TYPE     76     78     79
D84V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             2              78
  CLUS_3            21              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        7     15     14
  SETD2 WILD-TYPE     82    145    124
D84V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             7              82
  CLUS_2            15             145
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       18     14      4
  SETD2 WILD-TYPE    164    119     68
D84V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            18             164
  CLUS_2            14             119
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        8     19     10      9
  SETD2 WILD-TYPE    104     77     82    177
D84V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             8             104
  CLUS_2            19              77
  CLUS_3            10              82
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD2 MUTATED        6      8     12      3      6      1     10
  SETD2 WILD-TYPE     54     42     37     37     57    124     89
D84V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             8              42
  CLUS_3            12              37
  CLUS_4             3              37
  CLUS_5             6              57
  CLUS_6             1             124
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED       27      6      0     11
  SETD2 WILD-TYPE    103     72     68    185
D84V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            27             103
  CLUS_2             6              72
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SETD2 MUTATED       10      6      2      8     13      1      1      1
  SETD2 WILD-TYPE     30     56     26     72     56     47     42     27
                 vv
clus              CLUS_9
  SETD2 MUTATED        2
  SETD2 WILD-TYPE     72
D84V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            10              30
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             8              72
  CLUS_5            13              56
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        3      3      2      3
  SETD2 WILD-TYPE     30     28     25     16
D84V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        7      1      2      1
  SETD2 WILD-TYPE     47      9     22     21
D84V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = MAP4K3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K3 MUTATED        1      0      1      3
  MAP4K3 WILD-TYPE     45     58     63     40
D85V1, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K3 MUTATED        2      1      2
  MAP4K3 WILD-TYPE     49     82     75
D85V2, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K3 MUTATED       14      3      4      0
  MAP4K3 WILD-TYPE    164    180     97     20
D85V3, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              3              180
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K3 MUTATED        4      2     10
  MAP4K3 WILD-TYPE     83     78     90
D85V4, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K3 MUTATED        2      6     10
  MAP4K3 WILD-TYPE     87    154    128
D85V5, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K3 MUTATED       10      6      2
  MAP4K3 WILD-TYPE    172    127     70
D85V6, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K3 MUTATED        3      4      9      5
  MAP4K3 WILD-TYPE    109     92     83    181
D85V7, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              9               83
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP4K3 MUTATED        2      0      7      3      4      0      5
  MAP4K3 WILD-TYPE     58     50     42     37     59    125     94
D85V8, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              4               59
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K3 MUTATED        9      5      0      6
  MAP4K3 WILD-TYPE    121     73     68    190
D85V9, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP4K3 MUTATED        2      4      3      3      6      1      1      0
  MAP4K3 WILD-TYPE     38     58     25     77     63     47     42     28
                  vv
clus               CLUS_9
  MAP4K3 MUTATED        0
  MAP4K3 WILD-TYPE     74
D85V10, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K3 MUTATED        2      2      0      3
  MAP4K3 WILD-TYPE     31     29     27     16
D85V11, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K3 MUTATED        6      0      1      0
  MAP4K3 WILD-TYPE     48     10     23     22
D85V12, multiclass
        clus
vv       MAP4K3 MUTATED MAP4K3 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = SLC12A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A6 MUTATED        1      0      0      5
  SLC12A6 WILD-TYPE     45     58     64     38
D86V1, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A6 MUTATED        2      1      3
  SLC12A6 WILD-TYPE     49     82     74
D86V2, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A6 MUTATED       20      3      2      1
  SLC12A6 WILD-TYPE    158    180     99     19
D86V3, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1              20               158
  CLUS_2               3               180
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A6 MUTATED        7      2     11
  SLC12A6 WILD-TYPE     80     78     89
D86V4, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               2                78
  CLUS_3              11                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A6 MUTATED        4      7      9
  SLC12A6 WILD-TYPE     85    153    129
D86V5, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               7               153
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A6 MUTATED       11      8      1
  SLC12A6 WILD-TYPE    171    125     71
D86V6, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               8               125
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A6 MUTATED        2     11      7      6
  SLC12A6 WILD-TYPE    110     85     85    180
D86V7, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               2               110
  CLUS_2              11                85
  CLUS_3               7                85
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC12A6 MUTATED        4      5      9      3      0      0      5
  SLC12A6 WILD-TYPE     56     45     40     37     63    125     94
D86V8, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               5                45
  CLUS_3               9                40
  CLUS_4               3                37
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A6 MUTATED       13      2      2      8
  SLC12A6 WILD-TYPE    117     76     66    188
D86V9, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1              13               117
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC12A6 MUTATED        3      5      3      3      6      0      4      0
  SLC12A6 WILD-TYPE     37     57     25     77     63     48     39     28
                   vv
clus                CLUS_9
  SLC12A6 MUTATED        1
  SLC12A6 WILD-TYPE     73
D86V10, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               5                57
  CLUS_3               3                25
  CLUS_4               3                77
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               4                39
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A6 MUTATED        2      1      0      5
  SLC12A6 WILD-TYPE     31     30     27     14
D86V11, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A6 MUTATED        7      0      1      0
  SLC12A6 WILD-TYPE     47     10     23     22
D86V12, multiclass
        clus
vv       SLC12A6 MUTATED SLC12A6 WILD-TYPE
  CLUS_1               7                47
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = CDK12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        3      1      1      3
  CDK12 WILD-TYPE     43     57     63     40
D87V1, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        3      3      2
  CDK12 WILD-TYPE     48     80     75
D87V2, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED       23      5      4      0
  CDK12 WILD-TYPE    155    178     97     20
D87V3, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1            23             155
  CLUS_2             5             178
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        6      4     14
  CDK12 WILD-TYPE     81     76     86
D87V4, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3            14              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        7      9     10
  CDK12 WILD-TYPE     82    151    128
D87V5, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             7              82
  CLUS_2             9             151
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED       12      9      5
  CDK12 WILD-TYPE    170    124     67
D87V6, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1            12             170
  CLUS_2             9             124
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        5     15      6      7
  CDK12 WILD-TYPE    107     81     86    179
D87V7, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             5             107
  CLUS_2            15              81
  CLUS_3             6              86
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDK12 MUTATED        1      4     11      4      3      3      7
  CDK12 WILD-TYPE     59     46     38     36     60    122     92
D87V8, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3            11              38
  CLUS_4             4              36
  CLUS_5             3              60
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED       14      2      3     13
  CDK12 WILD-TYPE    116     76     65    183
D87V9, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1            14             116
  CLUS_2             2              76
  CLUS_3             3              65
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDK12 MUTATED        4      5      4      3      9      1      4      1
  CDK12 WILD-TYPE     36     57     24     77     60     47     39     27
                 vv
clus              CLUS_9
  CDK12 MUTATED        1
  CDK12 WILD-TYPE     73
D87V10, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             5              57
  CLUS_3             4              24
  CLUS_4             3              77
  CLUS_5             9              60
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        0      1      2      3
  CDK12 WILD-TYPE     33     30     25     16
D87V11, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        2      2      2      0
  CDK12 WILD-TYPE     52      8     22     22
D87V12, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = NEXN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        0      1      0      4
  NEXN WILD-TYPE     46     57     64     39
D88V1, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        1      1      3
  NEXN WILD-TYPE     50     82     74
D88V2, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED       12      5      3      0
  NEXN WILD-TYPE    166    178     98     20
D88V3, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1           12            166
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        4      4      7
  NEXN WILD-TYPE     83     76     93
D88V4, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        0     11      7
  NEXN WILD-TYPE     89    149    131
D88V5, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            0             89
  CLUS_2           11            149
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        8     10      0
  NEXN WILD-TYPE    174    123     72
D88V6, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            8            174
  CLUS_2           10            123
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        4      5      5      6
  NEXN WILD-TYPE    108     91     87    180
D88V7, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            4            108
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEXN MUTATED        4      2      2      1      6      1      4
  NEXN WILD-TYPE     56     48     47     39     57    124     95
D88V8, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            4             56
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            6             57
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        5      6      2      5
  NEXN WILD-TYPE    125     72     66    191
D88V9, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            5            125
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NEXN MUTATED        2      6      2      2      3      1      1      0      1
  NEXN WILD-TYPE     38     56     26     78     66     47     42     28     73
D88V10, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        3      3      2      0
  NEXN WILD-TYPE     30     28     25     19
D88V11, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            3             30
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        4      2      2      0
  NEXN WILD-TYPE     50      8     22     22
D88V12, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            4             50
  CLUS_2            2              8
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = GMPS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMPS MUTATED        4      0      0      2
  GMPS WILD-TYPE     42     58     64     41
D89V1, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMPS MUTATED        3      2      1
  GMPS WILD-TYPE     48     81     76
D89V2, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMPS MUTATED       12      2      2      1
  GMPS WILD-TYPE    166    181     99     19
D89V3, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMPS MUTATED        6      2      4
  GMPS WILD-TYPE     81     78     96
D89V4, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMPS MUTATED        0      4     10
  GMPS WILD-TYPE     89    156    128
D89V5, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMPS MUTATED        8      4      2
  GMPS WILD-TYPE    174    129     70
D89V6, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            8            174
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMPS MUTATED        2      3      5      7
  GMPS WILD-TYPE    110     93     87    179
D89V7, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            5             87
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GMPS MUTATED        1      2      4      1      2      2      5
  GMPS WILD-TYPE     59     48     45     39     61    123     94
D89V8, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMPS MUTATED        4      4      0      8
  GMPS WILD-TYPE    126     74     68    188
D89V9, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            4            126
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GMPS MUTATED        1      4      2      3      4      0      1      0      1
  GMPS WILD-TYPE     39     58     26     77     65     48     42     28     73
D89V10, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMPS MUTATED        0      3      0      0
  GMPS WILD-TYPE     33     28     27     19
D89V11, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            0             33
  CLUS_2            3             28
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMPS MUTATED        2      1      0      0
  GMPS WILD-TYPE     52      9     24     22
D89V12, multiclass
        clus
vv       GMPS MUTATED GMPS WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = PTGDR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTGDR MUTATED        0      0      0      1
  PTGDR WILD-TYPE     46     58     64     42
D90V1, multiclass
[1] "Remove cluster labels:" "PTGDR MUTATED"         
clus
  PTGDR MUTATED PTGDR WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTGDR MUTATED        0      0      1
  PTGDR WILD-TYPE     51     83     76
D90V2, multiclass
[1] "Remove cluster labels:" "PTGDR MUTATED"         
clus
  PTGDR MUTATED PTGDR WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTGDR MUTATED        4      5      0      0
  PTGDR WILD-TYPE    174    178    101     20
D90V3, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             4             174
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTGDR MUTATED        4      1      3
  PTGDR WILD-TYPE     83     79     97
D90V4, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTGDR MUTATED        0      6      3
  PTGDR WILD-TYPE     89    154    135
D90V5, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTGDR MUTATED        4      5      0
  PTGDR WILD-TYPE    178    128     72
D90V6, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTGDR MUTATED        2      2      2      3
  PTGDR WILD-TYPE    110     94     90    183
D90V7, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTGDR MUTATED        2      2      2      0      1      1      1
  PTGDR WILD-TYPE     58     48     47     40     62    124     98
D90V8, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTGDR MUTATED        4      2      0      3
  PTGDR WILD-TYPE    126     76     68    193
D90V9, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTGDR MUTATED        2      2      1      1      1      1      0      0
  PTGDR WILD-TYPE     38     60     27     79     68     47     43     28
                 vv
clus              CLUS_9
  PTGDR MUTATED        1
  PTGDR WILD-TYPE     73
D90V10, multiclass
        clus
vv       PTGDR MUTATED PTGDR WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTGDR MUTATED        0      1      0      0
  PTGDR WILD-TYPE     33     30     27     19
D90V11, multiclass
[1] "Remove cluster labels:" "PTGDR MUTATED"         
clus
  PTGDR MUTATED PTGDR WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F5-6811      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-G5-6641 
"PTGDR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTGDR MUTATED        0      1      0      0
  PTGDR WILD-TYPE     54      9     24     22
D90V12, multiclass
[1] "Remove cluster labels:" "PTGDR MUTATED"         
clus
  PTGDR MUTATED PTGDR WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-F5-6811      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" "PTGDR WILD-TYPE" 
     TCGA-G5-6641 
"PTGDR WILD-TYPE" 

Clustering(91) Variable = PRPS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPS1 MUTATED        0      0      1      0
  PRPS1 WILD-TYPE     46     58     63     43
D91V1, multiclass
[1] "Remove cluster labels:" "PRPS1 MUTATED"         
clus
  PRPS1 MUTATED PRPS1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3593      TCGA-AG-3594 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPS1 MUTATED        0      0      1
  PRPS1 WILD-TYPE     51     83     76
D91V2, multiclass
[1] "Remove cluster labels:" "PRPS1 MUTATED"         
clus
  PRPS1 MUTATED PRPS1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3593      TCGA-AG-3594 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPS1 MUTATED        4      3      1      1
  PRPS1 WILD-TYPE    174    180    100     19
D91V3, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPS1 MUTATED        4      1      3
  PRPS1 WILD-TYPE     83     79     97
D91V4, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPS1 MUTATED        2      2      5
  PRPS1 WILD-TYPE     87    158    133
D91V5, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPS1 MUTATED        6      1      2
  PRPS1 WILD-TYPE    176    132     70
D91V6, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPS1 MUTATED        1      4      2      2
  PRPS1 WILD-TYPE    111     92     90    184
D91V7, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRPS1 MUTATED        1      0      3      2      1      2      0
  PRPS1 WILD-TYPE     59     50     46     38     62    123     99
D91V8, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPS1 MUTATED        6      1      0      2
  PRPS1 WILD-TYPE    124     77     68    194
D91V9, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRPS1 MUTATED        2      1      0      4      2      0      0      0
  PRPS1 WILD-TYPE     38     61     28     76     67     48     43     28
                 vv
clus              CLUS_9
  PRPS1 MUTATED        0
  PRPS1 WILD-TYPE     74
D91V10, multiclass
        clus
vv       PRPS1 MUTATED PRPS1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPS1 MUTATED        1      0      0      1
  PRPS1 WILD-TYPE     32     31     27     18
D91V11, multiclass
[1] "Remove cluster labels:" "PRPS1 MUTATED"         
clus
  PRPS1 MUTATED PRPS1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPS1 MUTATED        1      0      1      0
  PRPS1 WILD-TYPE     53     10     23     22
D91V12, multiclass
[1] "Remove cluster labels:" "PRPS1 MUTATED"         
clus
  PRPS1 MUTATED PRPS1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" "PRPS1 WILD-TYPE" 

Clustering(92) Variable = BIRC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC3 MUTATED        1      0      0      3
  BIRC3 WILD-TYPE     45     58     64     40
D92V1, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC3 MUTATED        2      1      1
  BIRC3 WILD-TYPE     49     82     76
D92V2, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC3 MUTATED        9      3      2      1
  BIRC3 WILD-TYPE    169    180     99     19
D92V3, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC3 MUTATED        5      2      5
  BIRC3 WILD-TYPE     82     78     95
D92V4, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC3 MUTATED        2      6      4
  BIRC3 WILD-TYPE     87    154    134
D92V5, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC3 MUTATED        6      5      1
  BIRC3 WILD-TYPE    176    128     71
D92V6, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC3 MUTATED        4      5      2      4
  BIRC3 WILD-TYPE    108     91     90    182
D92V7, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BIRC3 MUTATED        3      1      4      2      1      0      4
  BIRC3 WILD-TYPE     57     49     45     38     62    125     95
D92V8, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC3 MUTATED        7      2      1      5
  BIRC3 WILD-TYPE    123     76     67    191
D92V9, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BIRC3 MUTATED        2      2      2      2      4      1      2      0
  BIRC3 WILD-TYPE     38     60     26     78     65     47     41     28
                 vv
clus              CLUS_9
  BIRC3 MUTATED        0
  BIRC3 WILD-TYPE     74
D92V10, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC3 MUTATED        2      0      1      1
  BIRC3 WILD-TYPE     31     31     26     18
D92V11, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC3 MUTATED        2      0      2      0
  BIRC3 WILD-TYPE     52     10     22     22
D92V12, multiclass
        clus
vv       BIRC3 MUTATED BIRC3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        2      0      0      1
  IDH1 WILD-TYPE     44     58     64     42
D93V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        3      0      0
  IDH1 WILD-TYPE     48     83     77
D93V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       12      5      3      1
  IDH1 WILD-TYPE    166    178     98     19
D93V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        8      4      6
  IDH1 WILD-TYPE     79     76     94
D93V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            4             76
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        4      7      9
  IDH1 WILD-TYPE     85    153    129
D93V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            7            153
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED       12      6      2
  IDH1 WILD-TYPE    170    127     70
D93V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        3      6      9      3
  IDH1 WILD-TYPE    109     90     83    183
D93V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            9             83
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH1 MUTATED        2      2      4      2      8      0      3
  IDH1 WILD-TYPE     58     48     45     38     55    125     96
D93V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            8             55
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED       10      7      1      3
  IDH1 WILD-TYPE    120     71     67    193
D93V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            7             71
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IDH1 MUTATED        3      6      0      2      5      2      2      1      0
  IDH1 WILD-TYPE     37     56     28     78     64     46     41     27     74
D93V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            6             56
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        2      6      0      3
  IDH1 WILD-TYPE     31     25     27     16
D93V11, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            6             25
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        6      1      2      2
  IDH1 WILD-TYPE     48      9     22     20
D93V12, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = ZNF486 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF486 MUTATED        1      0      0      2
  ZNF486 WILD-TYPE     45     58     64     41
D94V1, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF486 MUTATED        2      0      1
  ZNF486 WILD-TYPE     49     83     76
D94V2, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF486 MUTATED       10      2      1      0
  ZNF486 WILD-TYPE    168    181    100     20
D94V3, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF486 MUTATED        0      1      8
  ZNF486 WILD-TYPE     87     79     92
D94V4, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF486 MUTATED        2      3      2
  ZNF486 WILD-TYPE     87    157    136
D94V5, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF486 MUTATED        3      3      1
  ZNF486 WILD-TYPE    179    130     71
D94V6, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF486 MUTATED        2      4      4      3
  ZNF486 WILD-TYPE    110     92     88    183
D94V7, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF486 MUTATED        3      1      7      0      0      0      2
  ZNF486 WILD-TYPE     57     49     42     40     63    125     97
D94V8, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF486 MUTATED        6      1      0      6
  ZNF486 WILD-TYPE    124     77     68    190
D94V9, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF486 MUTATED        1      2      2      1      5      0      0      2
  ZNF486 WILD-TYPE     39     60     26     79     64     48     43     26
                  vv
clus               CLUS_9
  ZNF486 MUTATED        0
  ZNF486 WILD-TYPE     74
D94V10, multiclass
        clus
vv       ZNF486 MUTATED ZNF486 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF486 MUTATED        2      0      0      0
  ZNF486 WILD-TYPE     31     31     27     19
D94V11, multiclass
[1] "Remove cluster labels:" "ZNF486 MUTATED"        
clus
  ZNF486 MUTATED ZNF486 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF486 MUTATED        1      0      1      0
  ZNF486 WILD-TYPE     53     10     23     22
D94V12, multiclass
[1] "Remove cluster labels:" "ZNF486 MUTATED"        
clus
  ZNF486 MUTATED ZNF486 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" "ZNF486 WILD-TYPE" 

Clustering(95) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        9      1      5     10
  ATM WILD-TYPE     37     57     59     33
D95V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           9            37
  CLUS_2           1            57
  CLUS_3           5            59
  CLUS_4          10            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       10      5     10
  ATM WILD-TYPE     41     78     67
D95V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          10            41
  CLUS_2           5            78
  CLUS_3          10            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       75     47     29      4
  ATM WILD-TYPE    103    136     72     16
D95V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          75           103
  CLUS_2          47           136
  CLUS_3          29            72
  CLUS_4           4            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       37     33     58
  ATM WILD-TYPE     50     47     42
D95V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          37            50
  CLUS_2          33            47
  CLUS_3          58            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       18     54     56
  ATM WILD-TYPE     71    106     82
D95V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          18            71
  CLUS_2          54           106
  CLUS_3          56            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       64     45     19
  ATM WILD-TYPE    118     88     53
D95V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          64           118
  CLUS_2          45            88
  CLUS_3          19            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       44     49     36     27
  ATM WILD-TYPE     68     47     56    159
D95V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          44            68
  CLUS_2          49            47
  CLUS_3          36            56
  CLUS_4          27           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATM MUTATED       30     30     31     17     20      9     19
  ATM WILD-TYPE     30     20     18     23     43    116     80
D95V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          30            30
  CLUS_2          30            20
  CLUS_3          31            18
  CLUS_4          17            23
  CLUS_5          20            43
  CLUS_6           9           116
  CLUS_7          19            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       77     22     18     38
  ATM WILD-TYPE     53     56     50    158
D95V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          77            53
  CLUS_2          22            56
  CLUS_3          18            50
  CLUS_4          38           158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATM MUTATED       24     23     15     21     29     17     17      1      8
  ATM WILD-TYPE     16     39     13     59     40     31     26     27     66
D95V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          24            16
  CLUS_2          23            39
  CLUS_3          15            13
  CLUS_4          21            59
  CLUS_5          29            40
  CLUS_6          17            31
  CLUS_7          17            26
  CLUS_8           1            27
  CLUS_9           8            66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       14      6      9     12
  ATM WILD-TYPE     19     25     18      7
D95V11, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          14            19
  CLUS_2           6            25
  CLUS_3           9            18
  CLUS_4          12             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       19      2     13      7
  ATM WILD-TYPE     35      8     11     15
D95V12, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          19            35
  CLUS_2           2             8
  CLUS_3          13            11
  CLUS_4           7            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = HIST1H1T MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1T MUTATED        0      0      0      0
  HIST1H1T WILD-TYPE     46     58     64     43
D96V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1T MUTATED        0      0      0
  HIST1H1T WILD-TYPE     51     83     77
D96V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1T MUTATED        5      4      1      0
  HIST1H1T WILD-TYPE    173    179    100     20
D96V3, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                5                173
  CLUS_2                4                179
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1T MUTATED        4      2      4
  HIST1H1T WILD-TYPE     83     78     96
D96V4, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                2                 78
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1T MUTATED        1      2      6
  HIST1H1T WILD-TYPE     88    158    132
D96V5, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1T MUTATED        6      2      1
  HIST1H1T WILD-TYPE    176    131     71
D96V6, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                6                176
  CLUS_2                2                131
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1T MUTATED        1      6      3      0
  HIST1H1T WILD-TYPE    111     90     89    186
D96V7, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                1                111
  CLUS_2                6                 90
  CLUS_3                3                 89
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1T MUTATED        2      3      3      1      1      0      0
  HIST1H1T WILD-TYPE     58     47     46     39     62    125     99
D96V8, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                3                 47
  CLUS_3                3                 46
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1T MUTATED        5      4      1      0
  HIST1H1T WILD-TYPE    125     74     67    196
D96V9, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                5                125
  CLUS_2                4                 74
  CLUS_3                1                 67
  CLUS_4                0                196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H1T MUTATED        1      2      0      1      2      2      2      0
  HIST1H1T WILD-TYPE     39     60     28     79     67     46     41     28
                    vv
clus                 CLUS_9
  HIST1H1T MUTATED        0
  HIST1H1T WILD-TYPE     74
D96V10, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                2                 67
  CLUS_6                2                 46
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1T MUTATED        1      1      1      1
  HIST1H1T WILD-TYPE     32     30     26     18
D96V11, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1T MUTATED        1      1      1      1
  HIST1H1T WILD-TYPE     53      9     23     21
D96V12, multiclass
        clus
vv       HIST1H1T MUTATED HIST1H1T WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                  9
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = CREBBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       10      1      0      7
  CREBBP WILD-TYPE     36     57     64     36
D97V1, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             10               36
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              7               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       12      3      3
  CREBBP WILD-TYPE     39     80     74
D97V2, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             12               39
  CLUS_2              3               80
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       42     15      9      2
  CREBBP WILD-TYPE    136    168     92     18
D97V3, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             42              136
  CLUS_2             15              168
  CLUS_3              9               92
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       21      4     26
  CREBBP WILD-TYPE     66     76     74
D97V4, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             21               66
  CLUS_2              4               76
  CLUS_3             26               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        9     25     24
  CREBBP WILD-TYPE     80    135    114
D97V5, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              9               80
  CLUS_2             25              135
  CLUS_3             24              114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       28     20     10
  CREBBP WILD-TYPE    154    113     62
D97V6, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             28              154
  CLUS_2             20              113
  CLUS_3             10               62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       13     21     18     18
  CREBBP WILD-TYPE     99     75     74    168
D97V7, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             13               99
  CLUS_2             21               75
  CLUS_3             18               74
  CLUS_4             18              168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREBBP MUTATED       12     12     14      4      8      2     18
  CREBBP WILD-TYPE     48     38     35     36     55    123     81
D97V8, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             12               48
  CLUS_2             12               38
  CLUS_3             14               35
  CLUS_4              4               36
  CLUS_5              8               55
  CLUS_6              2              123
  CLUS_7             18               81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       34      8      5     22
  CREBBP WILD-TYPE     96     70     63    174
D97V9, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             34               96
  CLUS_2              8               70
  CLUS_3              5               63
  CLUS_4             22              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CREBBP MUTATED        7      7      5     13     19      1     11      4
  CREBBP WILD-TYPE     33     55     23     67     50     47     32     24
                  vv
clus               CLUS_9
  CREBBP MUTATED        2
  CREBBP WILD-TYPE     72
D97V10, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7               33
  CLUS_2              7               55
  CLUS_3              5               23
  CLUS_4             13               67
  CLUS_5             19               50
  CLUS_6              1               47
  CLUS_7             11               32
  CLUS_8              4               24
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6      3      5      6
  CREBBP WILD-TYPE     27     28     22     13
D97V11, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               27
  CLUS_2              3               28
  CLUS_3              5               22
  CLUS_4              6               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6      1      6      7
  CREBBP WILD-TYPE     48      9     18     15
D97V12, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               48
  CLUS_2              1                9
  CLUS_3              6               18
  CLUS_4              7               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = GMNN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMNN MUTATED        0      0      0      1
  GMNN WILD-TYPE     46     58     64     42
D98V1, multiclass
[1] "Remove cluster labels:" "GMNN MUTATED"          
clus
  GMNN MUTATED GMNN WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMNN MUTATED        0      1      0
  GMNN WILD-TYPE     51     82     77
D98V2, multiclass
[1] "Remove cluster labels:" "GMNN MUTATED"          
clus
  GMNN MUTATED GMNN WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMNN MUTATED        1      4      0      0
  GMNN WILD-TYPE    177    179    101     20
D98V3, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            1            177
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMNN MUTATED        2      0      2
  GMNN WILD-TYPE     85     80     98
D98V4, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMNN MUTATED        0      2      3
  GMNN WILD-TYPE     89    158    135
D98V5, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GMNN MUTATED        3      2      0
  GMNN WILD-TYPE    179    131     72
D98V6, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMNN MUTATED        2      0      2      1
  GMNN WILD-TYPE    110     96     90    185
D98V7, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GMNN MUTATED        2      0      0      2      0      0      1
  GMNN WILD-TYPE     58     50     49     38     63    125     98
D98V8, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMNN MUTATED        2      0      2      1
  GMNN WILD-TYPE    128     78     66    195
D98V9, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            2             66
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GMNN MUTATED        0      0      1      1      0      2      1      0      0
  GMNN WILD-TYPE     40     62     27     79     69     46     42     28     74
D98V10, multiclass
        clus
vv       GMNN MUTATED GMNN WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            0             69
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMNN MUTATED        1      0      1      0
  GMNN WILD-TYPE     32     31     26     19
D98V11, multiclass
[1] "Remove cluster labels:" "GMNN MUTATED"          
clus
  GMNN MUTATED GMNN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6672     TCGA-AG-3731 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6624 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMNN MUTATED        0      0      0      2
  GMNN WILD-TYPE     54     10     24     20
D98V12, multiclass
[1] "Remove cluster labels:" "GMNN MUTATED"          
clus
  GMNN MUTATED GMNN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6672     TCGA-AG-3731 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6624 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" "GMNN WILD-TYPE" 

Clustering(99) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        2      3      2      3
  CTNNB1 WILD-TYPE     44     55     62     40
D99V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              3               55
  CLUS_3              2               62
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        2      2      6
  CTNNB1 WILD-TYPE     49     81     71
D99V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              6               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED       37     37     15      4
  CTNNB1 WILD-TYPE    141    146     86     16
D99V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             37              141
  CLUS_2             37              146
  CLUS_3             15               86
  CLUS_4              4               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED       29     21     33
  CTNNB1 WILD-TYPE     58     59     67
D99V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             29               58
  CLUS_2             21               59
  CLUS_3             33               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        7     30     43
  CTNNB1 WILD-TYPE     82    130     95
D99V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              7               82
  CLUS_2             30              130
  CLUS_3             43               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED       42     31      7
  CTNNB1 WILD-TYPE    140    102     65
D99V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             42              140
  CLUS_2             31              102
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED       28     26     27     12
  CTNNB1 WILD-TYPE     84     70     65    174
D99V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             28               84
  CLUS_2             26               70
  CLUS_3             27               65
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTNNB1 MUTATED       15     19     21      9     16      3     10
  CTNNB1 WILD-TYPE     45     31     28     31     47    122     89
D99V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             15               45
  CLUS_2             19               31
  CLUS_3             21               28
  CLUS_4              9               31
  CLUS_5             16               47
  CLUS_6              3              122
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED       45     17     13     16
  CTNNB1 WILD-TYPE     85     61     55    180
D99V9, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             45               85
  CLUS_2             17               61
  CLUS_3             13               55
  CLUS_4             16              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CTNNB1 MUTATED       15     17      5     14     12      8     16      2
  CTNNB1 WILD-TYPE     25     45     23     66     57     40     27     26
                  vv
clus               CLUS_9
  CTNNB1 MUTATED        2
  CTNNB1 WILD-TYPE     72
D99V10, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             15               25
  CLUS_2             17               45
  CLUS_3              5               23
  CLUS_4             14               66
  CLUS_5             12               57
  CLUS_6              8               40
  CLUS_7             16               27
  CLUS_8              2               26
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED       10      5      3      8
  CTNNB1 WILD-TYPE     23     26     24     11
D99V11, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             10               23
  CLUS_2              5               26
  CLUS_3              3               24
  CLUS_4              8               11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED       16      2      2      6
  CTNNB1 WILD-TYPE     38      8     22     16
D99V12, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             16               38
  CLUS_2              2                8
  CLUS_3              2               22
  CLUS_4              6               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        1      0      0      1
  KDM6A WILD-TYPE     45     58     64     42
D100V1, multiclass
[1] "Remove cluster labels:" "KDM6A MUTATED"         
clus
  KDM6A MUTATED KDM6A WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AY-4071 
"KDM6A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        1      1      0
  KDM6A WILD-TYPE     50     82     77
D100V2, multiclass
[1] "Remove cluster labels:" "KDM6A MUTATED"         
clus
  KDM6A MUTATED KDM6A WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" "KDM6A WILD-TYPE" 
     TCGA-AY-4071 
"KDM6A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       14      8      6      0
  KDM6A WILD-TYPE    164    175     95     20
D100V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            14             164
  CLUS_2             8             175
  CLUS_3             6              95
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       11      6     10
  KDM6A WILD-TYPE     76     74     90
D100V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            11              76
  CLUS_2             6              74
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        5      7     13
  KDM6A WILD-TYPE     84    153    125
D100V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             5              84
  CLUS_2             7             153
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       13      8      4
  KDM6A WILD-TYPE    169    125     68
D100V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            13             169
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       11      5     10      2
  KDM6A WILD-TYPE    101     91     82    184
D100V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            11             101
  CLUS_2             5              91
  CLUS_3            10              82
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM6A MUTATED        4      5      5      1     11      0      2
  KDM6A WILD-TYPE     56     45     44     39     52    125     97
D100V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             4              56
  CLUS_2             5              45
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5            11              52
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       13      9      3      3
  KDM6A WILD-TYPE    117     69     65    193
D100V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            13             117
  CLUS_2             9              69
  CLUS_3             3              65
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM6A MUTATED        3      7      2      6      2      3      3      1
  KDM6A WILD-TYPE     37     55     26     74     67     45     40     27
                 vv
clus              CLUS_9
  KDM6A MUTATED        1
  KDM6A WILD-TYPE     73
D100V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              37
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             6              74
  CLUS_5             2              67
  CLUS_6             3              45
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        3      3      1      0
  KDM6A WILD-TYPE     30     28     26     19
D100V11, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        2      2      1      2
  KDM6A WILD-TYPE     52      8     23     20
D100V12, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = CLSPN MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSPN MUTATED        2      1      0      3
  CLSPN WILD-TYPE     44     57     64     40
D101V1, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLSPN MUTATED        1      2      3
  CLSPN WILD-TYPE     50     81     74
D101V2, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSPN MUTATED       17      9      6      2
  CLSPN WILD-TYPE    161    174     95     18
D101V3, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1            17             161
  CLUS_2             9             174
  CLUS_3             6              95
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLSPN MUTATED       14      6      8
  CLSPN WILD-TYPE     73     74     92
D101V4, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1            14              73
  CLUS_2             6              74
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLSPN MUTATED        5     13     13
  CLSPN WILD-TYPE     84    147    125
D101V5, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             5              84
  CLUS_2            13             147
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLSPN MUTATED       15     10      6
  CLSPN WILD-TYPE    167    123     66
D101V6, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1            15             167
  CLUS_2            10             123
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSPN MUTATED       10      8     11      5
  CLSPN WILD-TYPE    102     88     81    181
D101V7, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1            10             102
  CLUS_2             8              88
  CLUS_3            11              81
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLSPN MUTATED        8      5      5      3      8      3      2
  CLSPN WILD-TYPE     52     45     44     37     55    122     97
D101V8, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             8              52
  CLUS_2             5              45
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             8              55
  CLUS_6             3             122
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSPN MUTATED       12     10      4      7
  CLSPN WILD-TYPE    118     68     64    189
D101V9, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1            12             118
  CLUS_2            10              68
  CLUS_3             4              64
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLSPN MUTATED        2      4      1      8      5      7      4      0
  CLSPN WILD-TYPE     38     58     27     72     64     41     39     28
                 vv
clus              CLUS_9
  CLSPN MUTATED        2
  CLSPN WILD-TYPE     72
D101V10, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             8              72
  CLUS_5             5              64
  CLUS_6             7              41
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSPN MUTATED        5      6      1      1
  CLSPN WILD-TYPE     28     25     26     18
D101V11, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             5              28
  CLUS_2             6              25
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSPN MUTATED        8      0      1      4
  CLSPN WILD-TYPE     46     10     23     18
D101V12, multiclass
        clus
vv       CLSPN MUTATED CLSPN WILD-TYPE
  CLUS_1             8              46
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             4              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = FRMPD4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMPD4 MUTATED        1      0      0      3
  FRMPD4 WILD-TYPE     45     58     64     40
D102V1, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMPD4 MUTATED        2      1      1
  FRMPD4 WILD-TYPE     49     82     76
D102V2, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMPD4 MUTATED       15     13      6      2
  FRMPD4 WILD-TYPE    163    170     95     18
D102V3, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1             15              163
  CLUS_2             13              170
  CLUS_3              6               95
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMPD4 MUTATED       12      9      9
  FRMPD4 WILD-TYPE     75     71     91
D102V4, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1             12               75
  CLUS_2              9               71
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMPD4 MUTATED        6     13     12
  FRMPD4 WILD-TYPE     83    147    126
D102V5, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              6               83
  CLUS_2             13              147
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMPD4 MUTATED       12     14      5
  FRMPD4 WILD-TYPE    170    119     67
D102V6, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1             12              170
  CLUS_2             14              119
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMPD4 MUTATED       12     11      7      5
  FRMPD4 WILD-TYPE    100     85     85    181
D102V7, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1             12              100
  CLUS_2             11               85
  CLUS_3              7               85
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FRMPD4 MUTATED        7      3      7      5      8      1      4
  FRMPD4 WILD-TYPE     53     47     42     35     55    124     95
D102V8, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              7               53
  CLUS_2              3               47
  CLUS_3              7               42
  CLUS_4              5               35
  CLUS_5              8               55
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMPD4 MUTATED       14      8      5      8
  FRMPD4 WILD-TYPE    116     70     63    188
D102V9, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              8               70
  CLUS_3              5               63
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FRMPD4 MUTATED        5     10      2      7      4      2      2      1
  FRMPD4 WILD-TYPE     35     52     26     73     65     46     41     27
                  vv
clus               CLUS_9
  FRMPD4 MUTATED        2
  FRMPD4 WILD-TYPE     72
D102V10, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              5               35
  CLUS_2             10               52
  CLUS_3              2               26
  CLUS_4              7               73
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMPD4 MUTATED        1      3      0      1
  FRMPD4 WILD-TYPE     32     28     27     18
D102V11, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               28
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMPD4 MUTATED        2      0      1      2
  FRMPD4 WILD-TYPE     52     10     23     20
D102V12, multiclass
        clus
vv       FRMPD4 MUTATED FRMPD4 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = SAPS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS2 MUTATED        1      0      0      1
  SAPS2 WILD-TYPE     45     58     64     42
D103V1, multiclass
[1] "Remove cluster labels:" "SAPS2 MUTATED"         
clus
  SAPS2 MUTATED SAPS2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3968 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AY-4071 
"SAPS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS2 MUTATED        2      0      0
  SAPS2 WILD-TYPE     49     83     77
D103V2, multiclass
[1] "Remove cluster labels:" "SAPS2 MUTATED"         
clus
  SAPS2 MUTATED SAPS2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3968 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" "SAPS2 WILD-TYPE" 
     TCGA-AY-4071 
"SAPS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS2 MUTATED       11      0      2      0
  SAPS2 WILD-TYPE    167    183     99     20
D103V3, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS2 MUTATED        4      0      7
  SAPS2 WILD-TYPE     83     80     93
D103V4, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS2 MUTATED        2      3      5
  SAPS2 WILD-TYPE     87    157    133
D103V5, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS2 MUTATED        5      4      1
  SAPS2 WILD-TYPE    177    129     71
D103V6, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS2 MUTATED        0      7      4      2
  SAPS2 WILD-TYPE    112     89     88    184
D103V7, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAPS2 MUTATED        0      0      8      2      0      0      3
  SAPS2 WILD-TYPE     60     50     41     38     63    125     96
D103V8, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS2 MUTATED        6      2      1      4
  SAPS2 WILD-TYPE    124     76     67    192
D103V9, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SAPS2 MUTATED        1      2      1      0      8      0      1      0
  SAPS2 WILD-TYPE     39     60     27     80     61     48     42     28
                 vv
clus              CLUS_9
  SAPS2 MUTATED        0
  SAPS2 WILD-TYPE     74
D103V10, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS2 MUTATED        1      0      1      4
  SAPS2 WILD-TYPE     32     31     26     15
D103V11, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS2 MUTATED        2      0      4      0
  SAPS2 WILD-TYPE     52     10     20     22
D103V12, multiclass
        clus
vv       SAPS2 MUTATED SAPS2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = MYST4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        4      0      1      5
  MYST4 WILD-TYPE     42     58     63     38
D104V1, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        7      0      3
  MYST4 WILD-TYPE     44     83     74
D104V2, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED       18      4      7      1
  MYST4 WILD-TYPE    160    179     94     19
D104V3, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             4             179
  CLUS_3             7              94
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED       10      3      7
  MYST4 WILD-TYPE     77     77     93
D104V4, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             3              77
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED        4     10     12
  MYST4 WILD-TYPE     85    150    126
D104V5, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            10             150
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST4 MUTATED       13      6      7
  MYST4 WILD-TYPE    169    127     65
D104V6, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1            13             169
  CLUS_2             6             127
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        4     10      6     10
  MYST4 WILD-TYPE    108     86     86    176
D104V7, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             4             108
  CLUS_2            10              86
  CLUS_3             6              86
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYST4 MUTATED        4      5      9      0      3      1      8
  MYST4 WILD-TYPE     56     45     40     40     60    124     91
D104V8, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             5              45
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        9      4      4     13
  MYST4 WILD-TYPE    121     74     64    183
D104V9, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             4              64
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYST4 MUTATED        4      6      3      2     10      0      3      0
  MYST4 WILD-TYPE     36     56     25     78     59     48     40     28
                 vv
clus              CLUS_9
  MYST4 MUTATED        2
  MYST4 WILD-TYPE     72
D104V10, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        0      0      3      3
  MYST4 WILD-TYPE     33     31     24     16
D104V11, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             3              24
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST4 MUTATED        2      0      3      1
  MYST4 WILD-TYPE     52     10     21     21
D104V12, multiclass
        clus
vv       MYST4 MUTATED MYST4 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = PRPH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPH2 MUTATED        3      0      0      0
  PRPH2 WILD-TYPE     43     58     64     43
D105V1, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPH2 MUTATED        3      0      0
  PRPH2 WILD-TYPE     48     83     77
D105V2, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPH2 MUTATED        5      2      6      0
  PRPH2 WILD-TYPE    173    181     95     20
D105V3, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             6              95
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPH2 MUTATED        2      4      3
  PRPH2 WILD-TYPE     85     76     97
D105V4, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             4              76
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPH2 MUTATED        0      5      5
  PRPH2 WILD-TYPE     89    155    133
D105V5, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRPH2 MUTATED        5      3      2
  PRPH2 WILD-TYPE    177    130     70
D105V6, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPH2 MUTATED        3      3      3      4
  PRPH2 WILD-TYPE    109     93     89    182
D105V7, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRPH2 MUTATED        2      3      1      1      2      0      4
  PRPH2 WILD-TYPE     58     47     48     39     61    125     95
D105V8, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPH2 MUTATED        3      2      4      4
  PRPH2 WILD-TYPE    127     76     64    192
D105V9, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             4              64
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRPH2 MUTATED        0      3      2      2      3      0      2      0
  PRPH2 WILD-TYPE     40     59     26     78     66     48     41     28
                 vv
clus              CLUS_9
  PRPH2 MUTATED        1
  PRPH2 WILD-TYPE     73
D105V10, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPH2 MUTATED        0      0      2      1
  PRPH2 WILD-TYPE     33     31     25     18
D105V11, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPH2 MUTATED        1      0      2      0
  PRPH2 WILD-TYPE     53     10     22     22
D105V12, multiclass
        clus
vv       PRPH2 MUTATED PRPH2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = RBMX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        0      1      0      0
  RBMX WILD-TYPE     46     57     64     43
D106V1, multiclass
[1] "Remove cluster labels:" "RBMX MUTATED"          
clus
  RBMX MUTATED RBMX WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        0      1      0
  RBMX WILD-TYPE     51     82     77
D106V2, multiclass
[1] "Remove cluster labels:" "RBMX MUTATED"          
clus
  RBMX MUTATED RBMX WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" "RBMX WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RBMX WILD-TYPE" "RBMX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED       12      3      4      1
  RBMX WILD-TYPE    166    180     97     19
D106V3, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1           12            166
  CLUS_2            3            180
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        7      2     10
  RBMX WILD-TYPE     80     78     90
D106V4, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            7             80
  CLUS_2            2             78
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        1      2     11
  RBMX WILD-TYPE     88    158    127
D106V5, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED       11      3      0
  RBMX WILD-TYPE    171    130     72
D106V6, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1           11            171
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        2      6     11      1
  RBMX WILD-TYPE    110     90     81    185
D106V7, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3           11             81
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBMX MUTATED        4      2      9      1      3      1      0
  RBMX WILD-TYPE     56     48     40     39     60    124     99
D106V8, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            4             56
  CLUS_2            2             48
  CLUS_3            9             40
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED       10      6      1      3
  RBMX WILD-TYPE    120     72     67    193
D106V9, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1           10            120
  CLUS_2            6             72
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBMX MUTATED        1      8      1      5      3      1      1      0      0
  RBMX WILD-TYPE     39     54     27     75     66     47     42     28     74
D106V10, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            1             39
  CLUS_2            8             54
  CLUS_3            1             27
  CLUS_4            5             75
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        1      1      2      2
  RBMX WILD-TYPE     32     30     25     17
D106V11, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        4      0      1      1
  RBMX WILD-TYPE     50     10     23     21
D106V12, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = LDHA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDHA MUTATED        1      0      0      2
  LDHA WILD-TYPE     45     58     64     41
D107V1, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDHA MUTATED        2      0      1
  LDHA WILD-TYPE     49     83     76
D107V2, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDHA MUTATED        6      3      3      1
  LDHA WILD-TYPE    172    180     98     19
D107V3, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            6            172
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDHA MUTATED        1      6      4
  LDHA WILD-TYPE     86     74     96
D107V4, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            6             74
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDHA MUTATED        2      1      7
  LDHA WILD-TYPE     87    159    131
D107V5, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDHA MUTATED       10      0      0
  LDHA WILD-TYPE    172    133     72
D107V6, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1           10            172
  CLUS_2            0            133
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDHA MUTATED        3      2      5      4
  LDHA WILD-TYPE    109     94     87    182
D107V7, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LDHA MUTATED        3      1      3      1      2      1      3
  LDHA WILD-TYPE     57     49     46     39     61    124     96
D107V8, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDHA MUTATED        9      2      0      2
  LDHA WILD-TYPE    121     76     68    194
D107V9, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            9            121
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LDHA MUTATED        1      3      4      1      2      1      0      1      0
  LDHA WILD-TYPE     39     59     24     79     67     47     43     27     74
D107V10, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            4             24
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDHA MUTATED        0      1      1      3
  LDHA WILD-TYPE     33     30     26     16
D107V11, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDHA MUTATED        4      0      1      0
  LDHA WILD-TYPE     50     10     23     22
D107V12, multiclass
        clus
vv       LDHA MUTATED LDHA WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = GFI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFI1 MUTATED        3      0      0      0
  GFI1 WILD-TYPE     43     58     64     43
D108V1, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFI1 MUTATED        3      0      0
  GFI1 WILD-TYPE     48     83     77
D108V2, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFI1 MUTATED        4      4      2      1
  GFI1 WILD-TYPE    174    179     99     19
D108V3, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFI1 MUTATED        3      2      3
  GFI1 WILD-TYPE     84     78     97
D108V4, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFI1 MUTATED        2      1      6
  GFI1 WILD-TYPE     87    159    132
D108V5, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GFI1 MUTATED        5      2      2
  GFI1 WILD-TYPE    177    131     70
D108V6, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFI1 MUTATED        2      2      4      3
  GFI1 WILD-TYPE    110     94     88    183
D108V7, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GFI1 MUTATED        1      3      1      3      0      0      3
  GFI1 WILD-TYPE     59     47     48     37     63    125     96
D108V8, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            3             37
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFI1 MUTATED        4      2      2      3
  GFI1 WILD-TYPE    126     76     66    193
D108V9, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GFI1 MUTATED        4      1      0      1      3      0      1      0      1
  GFI1 WILD-TYPE     36     61     28     79     66     48     42     28     73
D108V10, multiclass
        clus
vv       GFI1 MUTATED GFI1 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFI1 MUTATED        1      1      0      0
  GFI1 WILD-TYPE     32     30     27     19
D108V11, multiclass
[1] "Remove cluster labels:" "GFI1 MUTATED"          
clus
  GFI1 MUTATED GFI1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFI1 MUTATED        1      0      0      1
  GFI1 WILD-TYPE     53     10     24     21
D108V12, multiclass
[1] "Remove cluster labels:" "GFI1 MUTATED"          
clus
  GFI1 MUTATED GFI1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" "GFI1 WILD-TYPE" 

Clustering(109) Variable = SLC9A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        1      1      0      4
  SLC9A10 WILD-TYPE     45     57     64     39
D109V1, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A10 MUTATED        2      1      3
  SLC9A10 WILD-TYPE     49     82     74
D109V2, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED       16      5      2      0
  SLC9A10 WILD-TYPE    162    178     99     20
D109V3, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1              16               162
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A10 MUTATED        9      2      6
  SLC9A10 WILD-TYPE     78     78     94
D109V4, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A10 MUTATED        2      7     14
  SLC9A10 WILD-TYPE     87    153    124
D109V5, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               7               153
  CLUS_3              14               124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A10 MUTATED       12      7      4
  SLC9A10 WILD-TYPE    170    126     68
D109V6, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1              12               170
  CLUS_2               7               126
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        7      4      7      4
  SLC9A10 WILD-TYPE    105     92     85    182
D109V7, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               7               105
  CLUS_2               4                92
  CLUS_3               7                85
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC9A10 MUTATED        4      3      5      2      4      1      3
  SLC9A10 WILD-TYPE     56     47     44     38     59    124     96
D109V8, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               3                47
  CLUS_3               5                44
  CLUS_4               2                38
  CLUS_5               4                59
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        7      4      4      7
  SLC9A10 WILD-TYPE    123     74     64    189
D109V9, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               4                74
  CLUS_3               4                64
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC9A10 MUTATED        1      5      1      5      4      1      4      0
  SLC9A10 WILD-TYPE     39     57     27     75     65     47     39     28
                   vv
clus                CLUS_9
  SLC9A10 MUTATED        1
  SLC9A10 WILD-TYPE     73
D109V10, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               5                57
  CLUS_3               1                27
  CLUS_4               5                75
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               4                39
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        2      0      4      1
  SLC9A10 WILD-TYPE     31     31     23     18
D109V11, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               4                23
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        2      0      2      3
  SLC9A10 WILD-TYPE     52     10     22     19
D109V12, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = OXSM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXSM MUTATED        3      0      0      2
  OXSM WILD-TYPE     43     58     64     41
D110V1, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXSM MUTATED        4      0      1
  OXSM WILD-TYPE     47     83     76
D110V2, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXSM MUTATED        9      1      3      1
  OXSM WILD-TYPE    169    182     98     19
D110V3, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXSM MUTATED        2      2      5
  OXSM WILD-TYPE     85     78     95
D110V4, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXSM MUTATED        0      4      8
  OXSM WILD-TYPE     89    156    130
D110V5, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OXSM MUTATED        6      5      1
  OXSM WILD-TYPE    176    128     71
D110V6, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXSM MUTATED        3      3      3      5
  OXSM WILD-TYPE    109     93     89    181
D110V7, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OXSM MUTATED        2      1      2      0      3      0      6
  OXSM WILD-TYPE     58     49     47     40     60    125     93
D110V8, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXSM MUTATED        4      1      2      5
  OXSM WILD-TYPE    126     77     66    191
D110V9, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  OXSM MUTATED        1      2      3      0      4      0      2      0      0
  OXSM WILD-TYPE     39     60     25     80     65     48     41     28     74
D110V10, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXSM MUTATED        0      0      3      1
  OXSM WILD-TYPE     33     31     24     18
D110V11, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            3             24
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXSM MUTATED        1      0      1      2
  OXSM WILD-TYPE     53     10     23     20
D110V12, multiclass
        clus
vv       OXSM MUTATED OXSM WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = NTAN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        1      0      0      2
  NTAN1 WILD-TYPE     45     58     64     41
D111V1, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTAN1 MUTATED        3      0      0
  NTAN1 WILD-TYPE     48     83     77
D111V2, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED       10      0      0      0
  NTAN1 WILD-TYPE    168    183    101     20
D111V3, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTAN1 MUTATED        1      0      6
  NTAN1 WILD-TYPE     86     80     94
D111V4, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTAN1 MUTATED        1      2      6
  NTAN1 WILD-TYPE     88    158    132
D111V5, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTAN1 MUTATED        7      1      1
  NTAN1 WILD-TYPE    175    132     71
D111V6, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        0      4      3      3
  NTAN1 WILD-TYPE    112     92     89    183
D111V7, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NTAN1 MUTATED        0      0      7      0      0      0      3
  NTAN1 WILD-TYPE     60     50     42     40     63    125     96
D111V8, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        7      0      0      2
  NTAN1 WILD-TYPE    123     78     68    194
D111V9, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NTAN1 MUTATED        1      1      0      0      5      0      2      0
  NTAN1 WILD-TYPE     39     61     28     80     64     48     41     28
                 vv
clus              CLUS_9
  NTAN1 MUTATED        0
  NTAN1 WILD-TYPE     74
D111V10, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        0      0      0      2
  NTAN1 WILD-TYPE     33     31     27     17
D111V11, multiclass
[1] "Remove cluster labels:" "NTAN1 MUTATED"         
clus
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        2      0      0      0
  NTAN1 WILD-TYPE     52     10     24     22
D111V12, multiclass
[1] "Remove cluster labels:" "NTAN1 MUTATED"         
clus
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 

Clustering(112) Variable = ICAM5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM5 MUTATED        1      0      0      1
  ICAM5 WILD-TYPE     45     58     64     42
D112V1, multiclass
[1] "Remove cluster labels:" "ICAM5 MUTATED"         
clus
  ICAM5 MUTATED ICAM5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AY-4071 
"ICAM5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM5 MUTATED        0      1      1
  ICAM5 WILD-TYPE     51     82     76
D112V2, multiclass
[1] "Remove cluster labels:" "ICAM5 MUTATED"         
clus
  ICAM5 MUTATED ICAM5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" "ICAM5 WILD-TYPE" 
     TCGA-AY-4071 
"ICAM5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM5 MUTATED       11      3      0      1
  ICAM5 WILD-TYPE    167    180    101     19
D112V3, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM5 MUTATED        2      2      9
  ICAM5 WILD-TYPE     85     78     91
D112V4, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM5 MUTATED        3      5      6
  ICAM5 WILD-TYPE     86    155    132
D112V5, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM5 MUTATED        6      6      2
  ICAM5 WILD-TYPE    176    127     70
D112V6, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM5 MUTATED        2      8      3      2
  ICAM5 WILD-TYPE    110     88     89    184
D112V7, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ICAM5 MUTATED        2      0      5      3      2      1      2
  ICAM5 WILD-TYPE     58     50     44     37     61    124     97
D112V8, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM5 MUTATED        6      1      1      7
  ICAM5 WILD-TYPE    124     77     67    189
D112V9, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ICAM5 MUTATED        3      2      0      1      7      1      1      0
  ICAM5 WILD-TYPE     37     60     28     79     62     47     42     28
                 vv
clus              CLUS_9
  ICAM5 MUTATED        0
  ICAM5 WILD-TYPE     74
D112V10, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM5 MUTATED        0      1      1      1
  ICAM5 WILD-TYPE     33     30     26     18
D112V11, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM5 MUTATED        1      1      1      0
  ICAM5 WILD-TYPE     53      9     23     22
D112V12, multiclass
        clus
vv       ICAM5 MUTATED ICAM5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = KCTD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        0      0      0      4
  KCTD3 WILD-TYPE     46     58     64     39
D113V1, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        1      1      2
  KCTD3 WILD-TYPE     50     82     75
D113V2, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED       17      1      1      0
  KCTD3 WILD-TYPE    161    182    100     20
D113V3, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        6      1      7
  KCTD3 WILD-TYPE     81     79     93
D113V4, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        4      4      9
  KCTD3 WILD-TYPE     85    156    129
D113V5, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED       10      6      1
  KCTD3 WILD-TYPE    172    127     71
D113V6, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        1      7      6      5
  KCTD3 WILD-TYPE    111     89     86    181
D113V7, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCTD3 MUTATED        2      0     11      2      0      0      4
  KCTD3 WILD-TYPE     58     50     38     38     63    125     95
D113V8, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3            11              38
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        8      3      1      6
  KCTD3 WILD-TYPE    122     75     67    190
D113V9, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCTD3 MUTATED        0      3      2      1      8      1      2      0
  KCTD3 WILD-TYPE     40     59     26     79     61     47     41     28
                 vv
clus              CLUS_9
  KCTD3 MUTATED        1
  KCTD3 WILD-TYPE     73
D113V10, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        1      1      0      6
  KCTD3 WILD-TYPE     32     30     27     13
D113V11, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        6      0      2      0
  KCTD3 WILD-TYPE     48     10     22     22
D113V12, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(114) Variable = RBM44 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM44 MUTATED        3      0      0      4
  RBM44 WILD-TYPE     43     58     64     39
D114V1, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM44 MUTATED        3      2      2
  RBM44 WILD-TYPE     48     81     75
D114V2, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM44 MUTATED       14      0      0      1
  RBM44 WILD-TYPE    164    183    101     19
D114V3, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM44 MUTATED        5      0      3
  RBM44 WILD-TYPE     82     80     97
D114V4, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM44 MUTATED        1      5      7
  RBM44 WILD-TYPE     88    155    131
D114V5, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM44 MUTATED        6      5      2
  RBM44 WILD-TYPE    176    128     70
D114V6, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM44 MUTATED        0      4      3      8
  RBM44 WILD-TYPE    112     92     89    178
D114V7, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM44 MUTATED        1      1      4      0      1      1      7
  RBM44 WILD-TYPE     59     49     45     40     62    124     92
D114V8, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM44 MUTATED        0      4      0     10
  RBM44 WILD-TYPE    130     74     68    186
D114V9, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM44 MUTATED        1      3      2      1      5      0      0      1
  RBM44 WILD-TYPE     39     59     26     79     64     48     43     27
                 vv
clus              CLUS_9
  RBM44 MUTATED        1
  RBM44 WILD-TYPE     73
D114V10, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM44 MUTATED        2      0      0      1
  RBM44 WILD-TYPE     31     31     27     18
D114V11, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM44 MUTATED        2      0      1      0
  RBM44 WILD-TYPE     52     10     23     22
D114V12, multiclass
        clus
vv       RBM44 MUTATED RBM44 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = KIAA1586 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1586 MUTATED        3      0      0      2
  KIAA1586 WILD-TYPE     43     58     64     41
D115V1, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1586 MUTATED        2      1      2
  KIAA1586 WILD-TYPE     49     82     75
D115V2, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1586 MUTATED        9      3      0      0
  KIAA1586 WILD-TYPE    169    180    101     20
D115V3, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1586 MUTATED        4      2      2
  KIAA1586 WILD-TYPE     83     78     98
D115V4, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                2                 78
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1586 MUTATED        2      5      4
  KIAA1586 WILD-TYPE     87    155    134
D115V5, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                5                155
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1586 MUTATED        5      6      0
  KIAA1586 WILD-TYPE    177    127     72
D115V6, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                6                127
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1586 MUTATED        1      1      5      6
  KIAA1586 WILD-TYPE    111     95     87    180
D115V7, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                1                 95
  CLUS_3                5                 87
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1586 MUTATED        1      2      3      0      2      1      4
  KIAA1586 WILD-TYPE     59     48     46     40     61    124     95
D115V8, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1586 MUTATED        1      4      1      7
  KIAA1586 WILD-TYPE    129     74     67    189
D115V9, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                4                 74
  CLUS_3                1                 67
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1586 MUTATED        0      3      0      1      5      0      1      0
  KIAA1586 WILD-TYPE     40     59     28     79     64     48     42     28
                    vv
clus                 CLUS_9
  KIAA1586 MUTATED        3
  KIAA1586 WILD-TYPE     71
D115V10, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1586 MUTATED        1      1      0      2
  KIAA1586 WILD-TYPE     32     30     27     17
D115V11, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1586 MUTATED        3      0      0      1
  KIAA1586 WILD-TYPE     51     10     24     21
D115V12, multiclass
        clus
vv       KIAA1586 MUTATED KIAA1586 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = CDX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        1      0      0      0
  CDX2 WILD-TYPE     45     58     64     43
D116V1, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             1            210 
    TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        1      0      0
  CDX2 WILD-TYPE     50     83     77
D116V2, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             1            210 
    TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        6      0      0      0
  CDX2 WILD-TYPE    172    183    101     20
D116V3, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        1      0      4
  CDX2 WILD-TYPE     86     80     96
D116V4, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        1      3      2
  CDX2 WILD-TYPE     88    157    136
D116V5, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        2      2      2
  CDX2 WILD-TYPE    180    131     70
D116V6, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        0      4      1      1
  CDX2 WILD-TYPE    112     92     91    185
D116V7, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDX2 MUTATED        0      0      4      1      0      0      1
  CDX2 WILD-TYPE     60     50     45     39     63    125     98
D116V8, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        4      0      0      2
  CDX2 WILD-TYPE    126     78     68    194
D116V9, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CDX2 MUTATED        1      1      0      0      3      0      1      0      0
  CDX2 WILD-TYPE     39     61     28     80     66     48     42     28     74
D116V10, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        0      0      0      2
  CDX2 WILD-TYPE     33     31     27     17
D116V11, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        0      0      2      0
  CDX2 WILD-TYPE     54     10     22     22
D116V12, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 

Clustering(117) Variable = EXD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXD2 MUTATED        1      0      0      1
  EXD2 WILD-TYPE     45     58     64     42
D117V1, multiclass
[1] "Remove cluster labels:" "EXD2 MUTATED"          
clus
  EXD2 MUTATED EXD2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AY-4071 
"EXD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXD2 MUTATED        2      0      0
  EXD2 WILD-TYPE     49     83     77
D117V2, multiclass
[1] "Remove cluster labels:" "EXD2 MUTATED"          
clus
  EXD2 MUTATED EXD2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" "EXD2 WILD-TYPE" 
    TCGA-AY-4071 
"EXD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXD2 MUTATED        9      1      2      1
  EXD2 WILD-TYPE    169    182     99     19
D117V3, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXD2 MUTATED        6      1      4
  EXD2 WILD-TYPE     81     79     96
D117V4, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXD2 MUTATED        3      2      7
  EXD2 WILD-TYPE     86    158    131
D117V5, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2            158
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXD2 MUTATED        9      2      1
  EXD2 WILD-TYPE    173    131     71
D117V6, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXD2 MUTATED        2      4      5      2
  EXD2 WILD-TYPE    110     92     87    184
D117V7, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXD2 MUTATED        1      2      2      2      4      0      2
  EXD2 WILD-TYPE     59     48     47     38     59    125     97
D117V8, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXD2 MUTATED        4      5      1      2
  EXD2 WILD-TYPE    126     73     67    194
D117V9, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EXD2 MUTATED        2      4      1      2      2      0      1      0      0
  EXD2 WILD-TYPE     38     58     27     78     67     48     42     28     74
D117V10, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXD2 MUTATED        1      2      1      1
  EXD2 WILD-TYPE     32     29     26     18
D117V11, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXD2 MUTATED        2      1      2      0
  EXD2 WILD-TYPE     52      9     22     22
D117V12, multiclass
        clus
vv       EXD2 MUTATED EXD2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = CLEC4F MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC4F MUTATED        0      1      0      2
  CLEC4F WILD-TYPE     46     57     64     41
D118V1, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC4F MUTATED        2      0      1
  CLEC4F WILD-TYPE     49     83     76
D118V2, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC4F MUTATED       17      3      0      0
  CLEC4F WILD-TYPE    161    180    101     20
D118V3, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1             17              161
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC4F MUTATED        9      2      6
  CLEC4F WILD-TYPE     78     78     94
D118V4, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              9               78
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC4F MUTATED        4      5     10
  CLEC4F WILD-TYPE     85    155    128
D118V5, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              4               85
  CLUS_2              5              155
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC4F MUTATED       11      6      2
  CLEC4F WILD-TYPE    171    127     70
D118V6, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1             11              171
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC4F MUTATED        3      8      5      4
  CLEC4F WILD-TYPE    109     88     87    182
D118V7, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              3              109
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLEC4F MUTATED        2      4      6      1      1      2      4
  CLEC4F WILD-TYPE     58     46     43     39     62    123     95
D118V8, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC4F MUTATED        7      3      1      8
  CLEC4F WILD-TYPE    123     75     67    188
D118V9, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLEC4F MUTATED        4      3      0      3      5      0      2      0
  CLEC4F WILD-TYPE     36     59     28     77     64     48     41     28
                  vv
clus               CLUS_9
  CLEC4F MUTATED        2
  CLEC4F WILD-TYPE     72
D118V10, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              4               36
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC4F MUTATED        1      0      0      3
  CLEC4F WILD-TYPE     32     31     27     16
D118V11, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC4F MUTATED        3      0      1      0
  CLEC4F WILD-TYPE     51     10     23     22
D118V12, multiclass
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = GPR174 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR174 MUTATED        2      0      1      0
  GPR174 WILD-TYPE     44     58     63     43
D119V1, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR174 MUTATED        2      1      0
  GPR174 WILD-TYPE     49     82     77
D119V2, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR174 MUTATED        2      6      1      1
  GPR174 WILD-TYPE    176    177    100     19
D119V3, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              6              177
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR174 MUTATED        3      1      3
  GPR174 WILD-TYPE     84     79     97
D119V4, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR174 MUTATED        3      2      4
  GPR174 WILD-TYPE     86    158    134
D119V5, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR174 MUTATED        5      1      3
  GPR174 WILD-TYPE    177    132     69
D119V6, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              1              132
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR174 MUTATED        2      2      4      2
  GPR174 WILD-TYPE    110     94     88    184
D119V7, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR174 MUTATED        1      0      1      3      2      1      2
  GPR174 WILD-TYPE     59     50     48     37     61    124     97
D119V8, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR174 MUTATED        4      2      1      3
  GPR174 WILD-TYPE    126     76     67    193
D119V9, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR174 MUTATED        1      2      1      1      1      0      2      1
  GPR174 WILD-TYPE     39     60     27     79     68     48     41     27
                  vv
clus               CLUS_9
  GPR174 MUTATED        1
  GPR174 WILD-TYPE     73
D119V10, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR174 MUTATED        2      0      0      1
  GPR174 WILD-TYPE     31     31     27     18
D119V11, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR174 MUTATED        3      0      0      0
  GPR174 WILD-TYPE     51     10     24     22
D119V12, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = NAA25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        5      0      1      5
  NAA25 WILD-TYPE     41     58     63     38
D120V1, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        7      3      1
  NAA25 WILD-TYPE     44     80     76
D120V2, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED       14      2      2      0
  NAA25 WILD-TYPE    164    181     99     20
D120V3, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        4      1      3
  NAA25 WILD-TYPE     83     79     97
D120V4, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        2      6      8
  NAA25 WILD-TYPE     87    154    130
D120V5, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        7      4      5
  NAA25 WILD-TYPE    175    129     67
D120V6, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        2      3      2     11
  NAA25 WILD-TYPE    110     93     90    175
D120V7, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAA25 MUTATED        4      1      1      1      1      2      8
  NAA25 WILD-TYPE     56     49     48     39     62    123     91
D120V8, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        3      1      3     10
  NAA25 WILD-TYPE    127     77     65    186
D120V9, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NAA25 MUTATED        0      1      2      4      7      1      1      0
  NAA25 WILD-TYPE     40     61     26     76     62     47     42     28
                 vv
clus              CLUS_9
  NAA25 MUTATED        1
  NAA25 WILD-TYPE     73
D120V10, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        2      1      1      0
  NAA25 WILD-TYPE     31     30     26     19
D120V11, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        1      1      2      0
  NAA25 WILD-TYPE     53      9     22     22
D120V12, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(121) Variable = FIGNL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        1      0      0      4
  FIGNL1 WILD-TYPE     45     58     64     39
D121V1, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        2      2      1
  FIGNL1 WILD-TYPE     49     81     76
D121V2, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED       13      4      2      0
  FIGNL1 WILD-TYPE    165    179     99     20
D121V3, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        6      3      5
  FIGNL1 WILD-TYPE     81     77     95
D121V4, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              3               77
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        2      5      7
  FIGNL1 WILD-TYPE     87    155    131
D121V5, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        8      5      1
  FIGNL1 WILD-TYPE    174    128     71
D121V6, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        3      6      4      6
  FIGNL1 WILD-TYPE    109     90     88    180
D121V7, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FIGNL1 MUTATED        0      3      4      1      5      1      5
  FIGNL1 WILD-TYPE     60     47     45     39     58    124     94
D121V8, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              5               58
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        5      5      2      7
  FIGNL1 WILD-TYPE    125     73     66    189
D121V9, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FIGNL1 MUTATED        1      5      5      1      4      0      1      0
  FIGNL1 WILD-TYPE     39     57     23     79     65     48     42     28
                  vv
clus               CLUS_9
  FIGNL1 MUTATED        2
  FIGNL1 WILD-TYPE     72
D121V10, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              5               57
  CLUS_3              5               23
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        0      1      0      0
  FIGNL1 WILD-TYPE     33     30     27     19
D121V11, multiclass
[1] "Remove cluster labels:" "FIGNL1 MUTATED"        
clus
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6306 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-G5-6641 
"FIGNL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        0      1      0      0
  FIGNL1 WILD-TYPE     54      9     24     22
D121V12, multiclass
[1] "Remove cluster labels:" "FIGNL1 MUTATED"        
clus
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6306 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" "FIGNL1 WILD-TYPE" 
      TCGA-G5-6641 
"FIGNL1 WILD-TYPE" 

Clustering(122) Variable = HMG20A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMG20A MUTATED        1      2      1      2
  HMG20A WILD-TYPE     45     56     63     41
D122V1, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2               56
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HMG20A MUTATED        1      4      1
  HMG20A WILD-TYPE     50     79     76
D122V2, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              1               50
  CLUS_2              4               79
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMG20A MUTATED        8      6      1      0
  HMG20A WILD-TYPE    170    177    100     20
D122V3, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              8              170
  CLUS_2              6              177
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HMG20A MUTATED        5      0      4
  HMG20A WILD-TYPE     82     80     96
D122V4, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HMG20A MUTATED        3      5      6
  HMG20A WILD-TYPE     86    155    132
D122V5, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HMG20A MUTATED        7      4      3
  HMG20A WILD-TYPE    175    129     69
D122V6, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              7              175
  CLUS_2              4              129
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMG20A MUTATED        1      5      2      7
  HMG20A WILD-TYPE    111     91     90    179
D122V7, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              2               90
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMG20A MUTATED        1      3      2      1      1      4      3
  HMG20A WILD-TYPE     59     47     47     39     62    121     96
D122V8, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              4              121
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMG20A MUTATED        4      3      2      6
  HMG20A WILD-TYPE    126     75     66    190
D122V9, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HMG20A MUTATED        2      2      2      3      2      0      1      0
  HMG20A WILD-TYPE     38     60     26     77     67     48     42     28
                  vv
clus               CLUS_9
  HMG20A MUTATED        3
  HMG20A WILD-TYPE     71
D122V10, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMG20A MUTATED        2      0      0      1
  HMG20A WILD-TYPE     31     31     27     18
D122V11, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMG20A MUTATED        2      0      0      1
  HMG20A WILD-TYPE     52     10     24     21
D122V12, multiclass
        clus
vv       HMG20A MUTATED HMG20A WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = SHROOM4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        4      0      0      1
  SHROOM4 WILD-TYPE     42     58     64     42
D123V1, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        4      1      0
  SHROOM4 WILD-TYPE     47     82     77
D123V2, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED       18      5      2      2
  SHROOM4 WILD-TYPE    160    178     99     18
D123V3, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1              18               160
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        5      8      9
  SHROOM4 WILD-TYPE     82     72     91
D123V4, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               8                72
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED        2     10     12
  SHROOM4 WILD-TYPE     87    150    126
D123V5, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                87
  CLUS_2              10               150
  CLUS_3              12               126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SHROOM4 MUTATED       12     10      2
  SHROOM4 WILD-TYPE    170    123     70
D123V6, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1              12               170
  CLUS_2              10               123
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED       10      7      6      5
  SHROOM4 WILD-TYPE    102     89     86    181
D123V7, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1              10               102
  CLUS_2               7                89
  CLUS_3               6                86
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SHROOM4 MUTATED        8      1      8      3      3      1      4
  SHROOM4 WILD-TYPE     52     49     41     37     60    124     95
D123V8, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               8                52
  CLUS_2               1                49
  CLUS_3               8                41
  CLUS_4               3                37
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED       16      3      3      5
  SHROOM4 WILD-TYPE    114     75     65    191
D123V9, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1              16               114
  CLUS_2               3                75
  CLUS_3               3                65
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SHROOM4 MUTATED        3      3      1      4     10      4      2      0
  SHROOM4 WILD-TYPE     37     59     27     76     59     44     41     28
                   vv
clus                CLUS_9
  SHROOM4 MUTATED        0
  SHROOM4 WILD-TYPE     74
D123V10, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               4                76
  CLUS_5              10                59
  CLUS_6               4                44
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        3      1      2      2
  SHROOM4 WILD-TYPE     30     30     25     17
D123V11, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                30
  CLUS_3               2                25
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHROOM4 MUTATED        2      1      3      2
  SHROOM4 WILD-TYPE     52      9     21     20
D123V12, multiclass
        clus
vv       SHROOM4 MUTATED SHROOM4 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               3                21
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = CASP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        6      0      0      3
  CASP8 WILD-TYPE     40     58     64     40
D124V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        9      0      0
  CASP8 WILD-TYPE     42     83     77
D124V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED       17      1      0      0
  CASP8 WILD-TYPE    161    182    101     20
D124V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        3      0      5
  CASP8 WILD-TYPE     84     80     95
D124V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        6      3      6
  CASP8 WILD-TYPE     83    157    132
D124V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        6      3      6
  CASP8 WILD-TYPE    176    130     66
D124V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             3             130
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        1      3      4     10
  CASP8 WILD-TYPE    111     93     88    176
D124V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP8 MUTATED        0      1      4      0      2      0     11
  CASP8 WILD-TYPE     60     49     45     40     61    125     88
D124V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        2      3      0     11
  CASP8 WILD-TYPE    128     75     68    185
D124V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASP8 MUTATED        2      2      1      1     10      0      0      0
  CASP8 WILD-TYPE     38     60     27     79     59     48     43     28
                 vv
clus              CLUS_9
  CASP8 MUTATED        0
  CASP8 WILD-TYPE     74
D124V10, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        0      1      1      1
  CASP8 WILD-TYPE     33     30     26     18
D124V11, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        1      0      2      0
  CASP8 WILD-TYPE     53     10     22     22
D124V12, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = HPS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS3 MUTATED        2      0      0      4
  HPS3 WILD-TYPE     44     58     64     39
D125V1, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS3 MUTATED        4      0      2
  HPS3 WILD-TYPE     47     83     75
D125V2, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS3 MUTATED       16      4      3      0
  HPS3 WILD-TYPE    162    179     98     20
D125V3, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            4            179
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS3 MUTATED        3      5      9
  HPS3 WILD-TYPE     84     75     91
D125V4, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            5             75
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS3 MUTATED        2      6     10
  HPS3 WILD-TYPE     87    154    128
D125V5, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS3 MUTATED        9      7      2
  HPS3 WILD-TYPE    173    126     70
D125V6, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            7            126
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS3 MUTATED        6      7      3      7
  HPS3 WILD-TYPE    106     89     89    179
D125V7, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HPS3 MUTATED        3      4      3      5      2      0      6
  HPS3 WILD-TYPE     57     46     46     35     61    125     93
D125V8, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3            3             46
  CLUS_4            5             35
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS3 MUTATED       11      1      2      7
  HPS3 WILD-TYPE    119     77     66    189
D125V9, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HPS3 MUTATED        3      1      4      5      5      0      0      0      3
  HPS3 WILD-TYPE     37     61     24     75     64     48     43     28     71
D125V10, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            1             61
  CLUS_3            4             24
  CLUS_4            5             75
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS3 MUTATED        0      0      1      2
  HPS3 WILD-TYPE     33     31     26     17
D125V11, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS3 MUTATED        1      0      2      0
  HPS3 WILD-TYPE     53     10     22     22
D125V12, multiclass
        clus
vv       HPS3 MUTATED HPS3 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(126) Variable = GLI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        0      0      1      3
  GLI1 WILD-TYPE     46     58     63     40
D126V1, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED        2      2      0
  GLI1 WILD-TYPE     49     81     77
D126V2, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED       15      3      2      1
  GLI1 WILD-TYPE    163    180     99     19
D126V3, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED        6      2      9
  GLI1 WILD-TYPE     81     78     91
D126V4, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED        2      4     12
  GLI1 WILD-TYPE     87    156    126
D126V5, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3           12            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED       11      5      2
  GLI1 WILD-TYPE    171    128     70
D126V6, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        2      8      6      5
  GLI1 WILD-TYPE    110     88     86    181
D126V7, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            8             88
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLI1 MUTATED        1      5      9      1      0      2      3
  GLI1 WILD-TYPE     59     45     40     39     63    123     96
D126V8, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            5             45
  CLUS_3            9             40
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED       13      1      0      6
  GLI1 WILD-TYPE    117     77     68    190
D126V9, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GLI1 MUTATED        2      4      2      0      5      2      2      0      3
  GLI1 WILD-TYPE     38     58     26     80     64     46     41     28     71
D126V10, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        2      1      0      4
  GLI1 WILD-TYPE     31     30     27     15
D126V11, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        5      0      1      1
  GLI1 WILD-TYPE     49     10     23     21
D126V12, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = PDCD5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD5 MUTATED        1      0      0      1
  PDCD5 WILD-TYPE     45     58     64     42
D127V1, multiclass
[1] "Remove cluster labels:" "PDCD5 MUTATED"         
clus
  PDCD5 MUTATED PDCD5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AY-4071 
"PDCD5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD5 MUTATED        1      0      1
  PDCD5 WILD-TYPE     50     83     76
D127V2, multiclass
[1] "Remove cluster labels:" "PDCD5 MUTATED"         
clus
  PDCD5 MUTATED PDCD5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" "PDCD5 WILD-TYPE" 
     TCGA-AY-4071 
"PDCD5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD5 MUTATED        6      1      3      1
  PDCD5 WILD-TYPE    172    182     98     19
D127V3, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD5 MUTATED        5      1      3
  PDCD5 WILD-TYPE     82     79     97
D127V4, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD5 MUTATED        1      3      6
  PDCD5 WILD-TYPE     88    157    132
D127V5, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD5 MUTATED        5      5      0
  PDCD5 WILD-TYPE    177    128     72
D127V6, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD5 MUTATED        2      3      4      2
  PDCD5 WILD-TYPE    110     93     88    184
D127V7, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDCD5 MUTATED        2      3      1      1      3      0      1
  PDCD5 WILD-TYPE     58     47     48     39     60    125     98
D127V8, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD5 MUTATED        2      3      1      5
  PDCD5 WILD-TYPE    128     75     67    191
D127V9, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PDCD5 MUTATED        2      2      1      1      1      1      1      1
  PDCD5 WILD-TYPE     38     60     27     79     68     47     42     27
                 vv
clus              CLUS_9
  PDCD5 MUTATED        1
  PDCD5 WILD-TYPE     73
D127V10, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD5 MUTATED        0      2      1      0
  PDCD5 WILD-TYPE     33     29     26     19
D127V11, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD5 MUTATED        2      0      0      1
  PDCD5 WILD-TYPE     52     10     24     21
D127V12, multiclass
        clus
vv       PDCD5 MUTATED PDCD5 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = BCL9L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        3      2      0      2
  BCL9L WILD-TYPE     43     56     64     41
D128V1, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED        2      2      3
  BCL9L WILD-TYPE     49     81     74
D128V2, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED       19      4      2      0
  BCL9L WILD-TYPE    159    179     99     20
D128V3, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            19             159
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED       10      2      5
  BCL9L WILD-TYPE     77     78     95
D128V4, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            10              77
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED        1      6     11
  BCL9L WILD-TYPE     88    154    127
D128V5, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED       10      4      4
  BCL9L WILD-TYPE    172    129     68
D128V6, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        2      8      8      6
  BCL9L WILD-TYPE    110     88     84    180
D128V7, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             8              84
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL9L MUTATED        3      3      9      2      0      3      4
  BCL9L WILD-TYPE     57     47     40     38     63    122     95
D128V8, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             3             122
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        9      4      2     10
  BCL9L WILD-TYPE    121     74     66    186
D128V9, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BCL9L MUTATED        2      6      1      2      6      1      1      3
  BCL9L WILD-TYPE     38     56     27     78     63     47     42     25
                 vv
clus              CLUS_9
  BCL9L MUTATED        3
  BCL9L WILD-TYPE     71
D128V10, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             3              25
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        2      0      0      3
  BCL9L WILD-TYPE     31     31     27     16
D128V11, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        4      0      1      0
  BCL9L WILD-TYPE     50     10     23     22
D128V12, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(129) Variable = TPM4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM4 MUTATED        1      0      0      3
  TPM4 WILD-TYPE     45     58     64     40
D129V1, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM4 MUTATED        3      0      1
  TPM4 WILD-TYPE     48     83     76
D129V2, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM4 MUTATED        7      1      1      0
  TPM4 WILD-TYPE    171    182    100     20
D129V3, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM4 MUTATED        2      1      2
  TPM4 WILD-TYPE     85     79     98
D129V4, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM4 MUTATED        1      3      2
  TPM4 WILD-TYPE     88    157    136
D129V5, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPM4 MUTATED        2      3      1
  TPM4 WILD-TYPE    180    130     71
D129V6, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM4 MUTATED        1      2      1      5
  TPM4 WILD-TYPE    111     94     91    181
D129V7, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPM4 MUTATED        2      0      3      0      0      0      4
  TPM4 WILD-TYPE     58     50     46     40     63    125     95
D129V8, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM4 MUTATED        3      0      0      6
  TPM4 WILD-TYPE    127     78     68    190
D129V9, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TPM4 MUTATED        0      1      0      0      6      1      0      0      1
  TPM4 WILD-TYPE     40     61     28     80     63     47     43     28     73
D129V10, multiclass
        clus
vv       TPM4 MUTATED TPM4 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM4 MUTATED        0      0      0      1
  TPM4 WILD-TYPE     33     31     27     18
D129V11, multiclass
[1] "Remove cluster labels:" "TPM4 MUTATED"          
clus
  TPM4 MUTATED TPM4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-G5-6641 
"TPM4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPM4 MUTATED        0      0      1      0
  TPM4 WILD-TYPE     54     10     23     22
D129V12, multiclass
[1] "Remove cluster labels:" "TPM4 MUTATED"          
clus
  TPM4 MUTATED TPM4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" "TPM4 WILD-TYPE" 
    TCGA-G5-6641 
"TPM4 WILD-TYPE" 

Clustering(130) Variable = CYLD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLD MUTATED        2      1      0      2
  CYLD WILD-TYPE     44     57     64     41
D130V1, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CYLD MUTATED        2      2      1
  CYLD WILD-TYPE     49     81     76
D130V2, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLD MUTATED        8     11      6      1
  CYLD WILD-TYPE    170    172     95     19
D130V3, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            8            170
  CLUS_2           11            172
  CLUS_3            6             95
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CYLD MUTATED        8      6      8
  CYLD WILD-TYPE     79     74     92
D130V4, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            8             79
  CLUS_2            6             74
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CYLD MUTATED        2      7     15
  CYLD WILD-TYPE     87    153    123
D130V5, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3           15            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CYLD MUTATED       13      7      4
  CYLD WILD-TYPE    169    126     68
D130V6, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1           13            169
  CLUS_2            7            126
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLD MUTATED        6      9      7      5
  CYLD WILD-TYPE    106     87     85    181
D130V7, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            6            106
  CLUS_2            9             87
  CLUS_3            7             85
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYLD MUTATED        4      7      3      3      5      1      4
  CYLD WILD-TYPE     56     43     46     37     58    124     95
D130V8, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            4             56
  CLUS_2            7             43
  CLUS_3            3             46
  CLUS_4            3             37
  CLUS_5            5             58
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLD MUTATED       11      5      5      6
  CYLD WILD-TYPE    119     73     63    190
D130V9, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1           11            119
  CLUS_2            5             73
  CLUS_3            5             63
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CYLD MUTATED        2      5      4      2      6      0      5      1      2
  CYLD WILD-TYPE     38     57     24     78     63     48     38     27     72
D130V10, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            5             38
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLD MUTATED        3      2      3      1
  CYLD WILD-TYPE     30     29     24     18
D130V11, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            3             24
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLD MUTATED        3      2      3      1
  CYLD WILD-TYPE     51      8     21     21
D130V12, multiclass
        clus
vv       CYLD MUTATED CYLD WILD-TYPE
  CLUS_1            3             51
  CLUS_2            2              8
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(131) Variable = AMOT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMOT MUTATED        2      0      1      0
  AMOT WILD-TYPE     44     58     63     43
D131V1, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMOT MUTATED        2      0      1
  AMOT WILD-TYPE     49     83     76
D131V2, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMOT MUTATED       12      1      2      1
  AMOT WILD-TYPE    166    182     99     19
D131V3, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1           12            166
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMOT MUTATED        5      1      6
  AMOT WILD-TYPE     82     79     94
D131V4, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMOT MUTATED        3      5      6
  AMOT WILD-TYPE     86    155    132
D131V5, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AMOT MUTATED        7      5      2
  AMOT WILD-TYPE    175    128     70
D131V6, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            7            175
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMOT MUTATED        3      5      5      3
  AMOT WILD-TYPE    109     91     87    183
D131V7, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMOT MUTATED        2      2      5      1      2      0      4
  AMOT WILD-TYPE     58     48     44     39     61    125     95
D131V8, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMOT MUTATED        4      2      2      7
  AMOT WILD-TYPE    126     76     66    189
D131V9, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMOT MUTATED        2      3      0      0      4      1      2      1      2
  AMOT WILD-TYPE     38     59     28     80     65     47     41     27     72
D131V10, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMOT MUTATED        2      0      1      0
  AMOT WILD-TYPE     31     31     26     19
D131V11, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMOT MUTATED        1      0      0      2
  AMOT WILD-TYPE     53     10     24     20
D131V12, multiclass
        clus
vv       AMOT MUTATED AMOT WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(132) Variable = GNPAT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPAT MUTATED        1      0      0      0
  GNPAT WILD-TYPE     45     58     64     43
D132V1, multiclass
[1] "Remove cluster labels:" "GNPAT MUTATED"         
clus
  GNPAT MUTATED GNPAT WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNPAT MUTATED        1      0      0
  GNPAT WILD-TYPE     50     83     77
D132V2, multiclass
[1] "Remove cluster labels:" "GNPAT MUTATED"         
clus
  GNPAT MUTATED GNPAT WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GNPAT WILD-TYPE" "GNPAT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPAT MUTATED       11      7      1      0
  GNPAT WILD-TYPE    167    176    100     20
D132V3, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1            11             167
  CLUS_2             7             176
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNPAT MUTATED        4      5      9
  GNPAT WILD-TYPE     83     75     91
D132V4, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             4              83
  CLUS_2             5              75
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNPAT MUTATED        1     11      7
  GNPAT WILD-TYPE     88    149    131
D132V5, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             1              88
  CLUS_2            11             149
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNPAT MUTATED        7     10      2
  GNPAT WILD-TYPE    175    123     70
D132V6, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             7             175
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPAT MUTATED        7      7      4      1
  GNPAT WILD-TYPE    105     89     88    185
D132V7, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             7             105
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNPAT MUTATED        0      2      7      3      5      0      2
  GNPAT WILD-TYPE     60     48     42     37     58    125     97
D132V8, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             3              37
  CLUS_5             5              58
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPAT MUTATED       11      4      2      2
  GNPAT WILD-TYPE    119     74     66    194
D132V9, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1            11             119
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GNPAT MUTATED        4      3      0      3      4      3      2      0
  GNPAT WILD-TYPE     36     59     28     77     65     45     41     28
                 vv
clus              CLUS_9
  GNPAT MUTATED        0
  GNPAT WILD-TYPE     74
D132V10, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             3              45
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPAT MUTATED        1      1      1      3
  GNPAT WILD-TYPE     32     30     26     16
D132V11, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPAT MUTATED        3      1      1      1
  GNPAT WILD-TYPE     51      9     23     21
D132V12, multiclass
        clus
vv       GNPAT MUTATED GNPAT WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = PRKAA2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAA2 MUTATED        2      1      2      2
  PRKAA2 WILD-TYPE     44     57     62     41
D133V1, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              2               62
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAA2 MUTATED        2      2      3
  PRKAA2 WILD-TYPE     49     81     74
D133V2, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAA2 MUTATED       13      2      1      0
  PRKAA2 WILD-TYPE    165    181    100     20
D133V3, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAA2 MUTATED        3      1      5
  PRKAA2 WILD-TYPE     84     79     95
D133V4, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAA2 MUTATED        2      3      8
  PRKAA2 WILD-TYPE     87    157    130
D133V5, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAA2 MUTATED        8      4      1
  PRKAA2 WILD-TYPE    174    129     71
D133V6, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAA2 MUTATED        0      4      5      7
  PRKAA2 WILD-TYPE    112     92     87    179
D133V7, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKAA2 MUTATED        1      2      4      0      3      4      2
  PRKAA2 WILD-TYPE     59     48     45     40     60    121     97
D133V8, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              4              121
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAA2 MUTATED        3      2      1      8
  PRKAA2 WILD-TYPE    127     76     67    188
D133V9, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKAA2 MUTATED        0      4      0      4      4      0      0      0
  PRKAA2 WILD-TYPE     40     58     28     76     65     48     43     28
                  vv
clus               CLUS_9
  PRKAA2 MUTATED        2
  PRKAA2 WILD-TYPE     72
D133V10, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              4               76
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAA2 MUTATED        1      1      0      2
  PRKAA2 WILD-TYPE     32     30     27     17
D133V11, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAA2 MUTATED        3      0      1      0
  PRKAA2 WILD-TYPE     51     10     23     22
D133V12, multiclass
        clus
vv       PRKAA2 MUTATED PRKAA2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(134) Variable = TMEM126A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM126A MUTATED        0      0      0      0
  TMEM126A WILD-TYPE     46     58     64     43
D134V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM126A MUTATED        0      0      0
  TMEM126A WILD-TYPE     51     83     77
D134V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM126A MUTATED        2      3      2      0
  TMEM126A WILD-TYPE    176    180     99     20
D134V3, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                2                176
  CLUS_2                3                180
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM126A MUTATED        0      2      5
  TMEM126A WILD-TYPE     87     78     95
D134V4, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                2                 78
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM126A MUTATED        0      4      0
  TMEM126A WILD-TYPE     89    156    138
D134V5, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                4                156
  CLUS_3                0                138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM126A MUTATED        1      3      0
  TMEM126A WILD-TYPE    181    130     72
D134V6, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                1                181
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM126A MUTATED        3      2      2      0
  TMEM126A WILD-TYPE    109     94     90    186
D134V7, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                3                109
  CLUS_2                2                 94
  CLUS_3                2                 90
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM126A MUTATED        3      1      2      0      1      0      0
  TMEM126A WILD-TYPE     57     49     47     40     62    125     99
D134V8, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM126A MUTATED        4      2      1      0
  TMEM126A WILD-TYPE    126     76     67    196
D134V9, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                4                126
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                0                196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM126A MUTATED        0      2      1      2      0      1      1      0
  TMEM126A WILD-TYPE     40     60     27     78     69     47     42     28
                    vv
clus                 CLUS_9
  TMEM126A MUTATED        0
  TMEM126A WILD-TYPE     74
D134V10, multiclass
        clus
vv       TMEM126A MUTATED TMEM126A WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                0                 69
  CLUS_6                1                 47
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM126A MUTATED        1      0      0      1
  TMEM126A WILD-TYPE     32     31     27     18
D134V11, multiclass
[1] "Remove cluster labels:" "TMEM126A MUTATED"      
clus
  TMEM126A MUTATED TMEM126A WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6605         TCGA-AZ-6607 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A282         TCGA-DM-A285 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM126A MUTATED        1      0      1      0
  TMEM126A WILD-TYPE     53     10     23     22
D134V12, multiclass
[1] "Remove cluster labels:" "TMEM126A MUTATED"      
clus
  TMEM126A MUTATED TMEM126A WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6605         TCGA-AZ-6607 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A282         TCGA-DM-A285 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" "TMEM126A WILD-TYPE" 

Clustering(135) Variable = OSBPL11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL11 MUTATED        4      0      0      2
  OSBPL11 WILD-TYPE     42     58     64     41
D135V1, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL11 MUTATED        5      0      1
  OSBPL11 WILD-TYPE     46     83     76
D135V2, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL11 MUTATED       12      3      3      1
  OSBPL11 WILD-TYPE    166    180     98     19
D135V3, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               3               180
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL11 MUTATED        4      2      7
  OSBPL11 WILD-TYPE     83     78     93
D135V4, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL11 MUTATED        4      3      7
  OSBPL11 WILD-TYPE     85    157    131
D135V5, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               3               157
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL11 MUTATED       10      3      1
  OSBPL11 WILD-TYPE    172    130     71
D135V6, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1              10               172
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL11 MUTATED        4      3      6      6
  OSBPL11 WILD-TYPE    108     93     86    180
D135V7, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               3                93
  CLUS_3               6                86
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSBPL11 MUTATED        2      4      4      1      3      0      5
  OSBPL11 WILD-TYPE     58     46     45     39     60    125     94
D135V8, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               4                46
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL11 MUTATED        6      4      3      4
  OSBPL11 WILD-TYPE    124     74     65    192
D135V9, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               4                74
  CLUS_3               3                65
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OSBPL11 MUTATED        1      3      2      3      5      0      3      0
  OSBPL11 WILD-TYPE     39     59     26     77     64     48     40     28
                   vv
clus                CLUS_9
  OSBPL11 MUTATED        0
  OSBPL11 WILD-TYPE     74
D135V10, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               3                40
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL11 MUTATED        3      1      2      1
  OSBPL11 WILD-TYPE     30     30     25     18
D135V11, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                30
  CLUS_3               2                25
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL11 MUTATED        3      1      2      1
  OSBPL11 WILD-TYPE     51      9     22     21
D135V12, multiclass
        clus
vv       OSBPL11 MUTATED OSBPL11 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = MLLT6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT6 MUTATED        2      1      0      0
  MLLT6 WILD-TYPE     44     57     64     43
D136V1, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT6 MUTATED        2      1      0
  MLLT6 WILD-TYPE     49     82     77
D136V2, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT6 MUTATED       11      4      2      0
  MLLT6 WILD-TYPE    167    179     99     20
D136V3, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT6 MUTATED        6      3      5
  MLLT6 WILD-TYPE     81     77     95
D136V4, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT6 MUTATED        3      4      9
  MLLT6 WILD-TYPE     86    156    129
D136V5, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT6 MUTATED       10      4      2
  MLLT6 WILD-TYPE    172    129     70
D136V6, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT6 MUTATED        4      4      6      3
  MLLT6 WILD-TYPE    108     92     86    183
D136V7, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             6              86
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLLT6 MUTATED        2      2      7      0      3      0      3
  MLLT6 WILD-TYPE     58     48     42     40     60    125     96
D136V8, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT6 MUTATED        5      6      0      5
  MLLT6 WILD-TYPE    125     72     68    191
D136V9, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             6              72
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MLLT6 MUTATED        2      6      0      3      3      0      1      1
  MLLT6 WILD-TYPE     38     56     28     77     66     48     42     27
                 vv
clus              CLUS_9
  MLLT6 MUTATED        0
  MLLT6 WILD-TYPE     74
D136V10, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT6 MUTATED        3      1      0      1
  MLLT6 WILD-TYPE     30     30     27     18
D136V11, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT6 MUTATED        5      0      0      0
  MLLT6 WILD-TYPE     49     10     24     22
D136V12, multiclass
        clus
vv       MLLT6 MUTATED MLLT6 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(137) Variable = USP24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP24 MUTATED        3      0      0      3
  USP24 WILD-TYPE     43     58     64     40
D137V1, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP24 MUTATED        4      1      1
  USP24 WILD-TYPE     47     82     76
D137V2, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP24 MUTATED       21      8      3      1
  USP24 WILD-TYPE    157    175     98     19
D137V3, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             8             175
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP24 MUTATED        7      5     16
  USP24 WILD-TYPE     80     75     84
D137V4, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             5              75
  CLUS_3            16              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP24 MUTATED        2     16     12
  USP24 WILD-TYPE     87    144    126
D137V5, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            16             144
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP24 MUTATED       14     13      3
  USP24 WILD-TYPE    168    120     69
D137V6, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1            14             168
  CLUS_2            13             120
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP24 MUTATED        7     13      7      7
  USP24 WILD-TYPE    105     83     85    179
D137V7, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             7             105
  CLUS_2            13              83
  CLUS_3             7              85
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP24 MUTATED        7      6      9      4      2      0      6
  USP24 WILD-TYPE     53     44     40     36     61    125     93
D137V8, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             6              44
  CLUS_3             9              40
  CLUS_4             4              36
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP24 MUTATED       15      5      5      8
  USP24 WILD-TYPE    115     73     63    188
D137V9, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1            15             115
  CLUS_2             5              73
  CLUS_3             5              63
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP24 MUTATED        3      2      3      6      9      2      6      1
  USP24 WILD-TYPE     37     60     25     74     60     46     37     27
                 vv
clus              CLUS_9
  USP24 MUTATED        1
  USP24 WILD-TYPE     73
D137V10, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             6              74
  CLUS_5             9              60
  CLUS_6             2              46
  CLUS_7             6              37
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP24 MUTATED        6      2      1      2
  USP24 WILD-TYPE     27     29     26     17
D137V11, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             6              27
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP24 MUTATED        4      0      3      4
  USP24 WILD-TYPE     50     10     21     18
D137V12, multiclass
        clus
vv       USP24 MUTATED USP24 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             4              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = ARFGEF1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED        2      0      0      8
  ARFGEF1 WILD-TYPE     44     58     64     35
D138V1, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               8                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED        6      2      2
  ARFGEF1 WILD-TYPE     45     81     75
D138V2, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED       24      4      8      1
  ARFGEF1 WILD-TYPE    154    179     93     19
D138V3, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              24               154
  CLUS_2               4               179
  CLUS_3               8                93
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED        9      8     10
  ARFGEF1 WILD-TYPE     78     72     90
D138V4, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               8                72
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED        4     13     10
  ARFGEF1 WILD-TYPE     85    147    128
D138V5, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               4                85
  CLUS_2              13               147
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED       10     10      7
  ARFGEF1 WILD-TYPE    172    123     65
D138V6, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              10               172
  CLUS_2              10               123
  CLUS_3               7                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED       11     11      5     10
  ARFGEF1 WILD-TYPE    101     85     87    176
D138V7, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              11               101
  CLUS_2              11                85
  CLUS_3               5                87
  CLUS_4              10               176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARFGEF1 MUTATED        4      6     10      3      5      2      7
  ARFGEF1 WILD-TYPE     56     44     39     37     58    123     92
D138V8, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               6                44
  CLUS_3              10                39
  CLUS_4               3                37
  CLUS_5               5                58
  CLUS_6               2               123
  CLUS_7               7                92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED       15      6      3     12
  ARFGEF1 WILD-TYPE    115     72     65    184
D138V9, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              15               115
  CLUS_2               6                72
  CLUS_3               3                65
  CLUS_4              12               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARFGEF1 MUTATED        5      5      7      4     10      2      2      0
  ARFGEF1 WILD-TYPE     35     57     21     76     59     46     41     28
                   vv
clus                CLUS_9
  ARFGEF1 MUTATED        1
  ARFGEF1 WILD-TYPE     73
D138V10, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               5                35
  CLUS_2               5                57
  CLUS_3               7                21
  CLUS_4               4                76
  CLUS_5              10                59
  CLUS_6               2                46
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED        2      2      0      3
  ARFGEF1 WILD-TYPE     31     29     27     16
D138V11, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED        3      0      2      2
  ARFGEF1 WILD-TYPE     51     10     22     20
D138V12, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = OR5V1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5V1 MUTATED        2      0      0      1
  OR5V1 WILD-TYPE     44     58     64     42
D139V1, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5V1 MUTATED        1      1      1
  OR5V1 WILD-TYPE     50     82     76
D139V2, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5V1 MUTATED        8      6      4      0
  OR5V1 WILD-TYPE    170    177     97     20
D139V3, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             6             177
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5V1 MUTATED        6      3      6
  OR5V1 WILD-TYPE     81     77     94
D139V4, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5V1 MUTATED        1      3      9
  OR5V1 WILD-TYPE     88    157    129
D139V5, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5V1 MUTATED        9      3      1
  OR5V1 WILD-TYPE    173    130     71
D139V6, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5V1 MUTATED        5      6      4      3
  OR5V1 WILD-TYPE    107     90     88    183
D139V7, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5V1 MUTATED        3      1      3      3      6      1      1
  OR5V1 WILD-TYPE     57     49     46     37     57    124     98
D139V8, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             6              57
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5V1 MUTATED       10      3      2      3
  OR5V1 WILD-TYPE    120     75     66    193
D139V9, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5V1 MUTATED        4      4      1      1      4      1      2      1
  OR5V1 WILD-TYPE     36     58     27     79     65     47     41     27
                 vv
clus              CLUS_9
  OR5V1 MUTATED        0
  OR5V1 WILD-TYPE     74
D139V10, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5V1 MUTATED        1      2      2      0
  OR5V1 WILD-TYPE     32     29     25     19
D139V11, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5V1 MUTATED        1      1      1      2
  OR5V1 WILD-TYPE     53      9     23     20
D139V12, multiclass
        clus
vv       OR5V1 MUTATED OR5V1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(140) Variable = PRB4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB4 MUTATED        0      0      2      1
  PRB4 WILD-TYPE     46     58     62     42
D140V1, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB4 MUTATED        0      2      1
  PRB4 WILD-TYPE     51     81     76
D140V2, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB4 MUTATED        4      5      2      1
  PRB4 WILD-TYPE    174    178     99     19
D140V3, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            5            178
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB4 MUTATED        4      4      1
  PRB4 WILD-TYPE     83     76     99
D140V4, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB4 MUTATED        2      2      5
  PRB4 WILD-TYPE     87    158    133
D140V5, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB4 MUTATED        7      2      0
  PRB4 WILD-TYPE    175    131     72
D140V6, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB4 MUTATED        3      2      5      2
  PRB4 WILD-TYPE    109     94     87    184
D140V7, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRB4 MUTATED        2      0      0      3      4      2      1
  PRB4 WILD-TYPE     58     50     49     37     59    123     98
D140V8, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            3             37
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB4 MUTATED        5      3      1      3
  PRB4 WILD-TYPE    125     75     67    193
D140V9, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PRB4 MUTATED        1      2      2      3      0      1      2      0      1
  PRB4 WILD-TYPE     39     60     26     77     69     47     41     28     73
D140V10, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            0             69
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB4 MUTATED        1      1      1      1
  PRB4 WILD-TYPE     32     30     26     18
D140V11, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB4 MUTATED        2      0      0      2
  PRB4 WILD-TYPE     52     10     24     20
D140V12, multiclass
        clus
vv       PRB4 MUTATED PRB4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = TRIP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        3      1      0      4
  TRIP11 WILD-TYPE     43     57     64     39
D141V1, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        3      2      3
  TRIP11 WILD-TYPE     48     81     74
D141V2, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED       18      6      1      1
  TRIP11 WILD-TYPE    160    177    100     19
D141V3, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              6              177
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        4      6      8
  TRIP11 WILD-TYPE     83     74     92
D141V4, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              6               74
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        1      9     10
  TRIP11 WILD-TYPE     88    151    128
D141V5, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              9              151
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED       11      9      0
  TRIP11 WILD-TYPE    171    124     72
D141V6, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              9              124
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        6      7      5      8
  TRIP11 WILD-TYPE    106     89     87    178
D141V7, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              7               89
  CLUS_3              5               87
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIP11 MUTATED        4      3      8      0      4      2      5
  TRIP11 WILD-TYPE     56     47     41     40     59    123     94
D141V8, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              3               47
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              4               59
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED       11      3      2      8
  TRIP11 WILD-TYPE    119     75     66    188
D141V9, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1             11              119
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIP11 MUTATED        4      3      3      2      8      1      2      0
  TRIP11 WILD-TYPE     36     59     25     78     61     47     41     28
                  vv
clus               CLUS_9
  TRIP11 MUTATED        1
  TRIP11 WILD-TYPE     73
D141V10, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              2               78
  CLUS_5              8               61
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        2      0      2      2
  TRIP11 WILD-TYPE     31     31     25     17
D141V11, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        3      1      1      1
  TRIP11 WILD-TYPE     51      9     23     21
D141V12, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = SLK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLK MUTATED        2      0      0      3
  SLK WILD-TYPE     44     58     64     40
D142V1, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLK MUTATED        2      1      2
  SLK WILD-TYPE     49     82     75
D142V2, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLK MUTATED       17      7      0      1
  SLK WILD-TYPE    161    176    101     19
D142V3, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1          17           161
  CLUS_2           7           176
  CLUS_3           0           101
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLK MUTATED        6      8      5
  SLK WILD-TYPE     81     72     95
D142V4, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           6            81
  CLUS_2           8            72
  CLUS_3           5            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLK MUTATED        2      9      9
  SLK WILD-TYPE     87    151    129
D142V5, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           2            87
  CLUS_2           9           151
  CLUS_3           9           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLK MUTATED        7     11      2
  SLK WILD-TYPE    175    122     70
D142V6, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           7           175
  CLUS_2          11           122
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLK MUTATED        7      6      5      7
  SLK WILD-TYPE    105     90     87    179
D142V7, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           7           105
  CLUS_2           6            90
  CLUS_3           5            87
  CLUS_4           7           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLK MUTATED        4      2      5      2      6      0      6
  SLK WILD-TYPE     56     48     44     38     57    125     93
D142V8, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           4            56
  CLUS_2           2            48
  CLUS_3           5            44
  CLUS_4           2            38
  CLUS_5           6            57
  CLUS_6           0           125
  CLUS_7           6            93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLK MUTATED        9      7      1      7
  SLK WILD-TYPE    121     71     67    189
D142V9, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           9           121
  CLUS_2           7            71
  CLUS_3           1            67
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SLK MUTATED        3      5      2      2      5      3      1      1      2
  SLK WILD-TYPE     37     57     26     78     64     45     42     27     72
D142V10, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           3            37
  CLUS_2           5            57
  CLUS_3           2            26
  CLUS_4           2            78
  CLUS_5           5            64
  CLUS_6           3            45
  CLUS_7           1            42
  CLUS_8           1            27
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLK MUTATED        2      3      0      2
  SLK WILD-TYPE     31     28     27     17
D142V11, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           2            31
  CLUS_2           3            28
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLK MUTATED        3      1      1      2
  SLK WILD-TYPE     51      9     23     20
D142V12, multiclass
        clus
vv       SLK MUTATED SLK WILD-TYPE
  CLUS_1           3            51
  CLUS_2           1             9
  CLUS_3           1            23
  CLUS_4           2            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(143) Variable = PON3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PON3 MUTATED        1      0      1      0
  PON3 WILD-TYPE     45     58     63     43
D143V1, multiclass
[1] "Remove cluster labels:" "PON3 MUTATED"          
clus
  PON3 MUTATED PON3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AY-4071 
"PON3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PON3 MUTATED        1      1      0
  PON3 WILD-TYPE     50     82     77
D143V2, multiclass
[1] "Remove cluster labels:" "PON3 MUTATED"          
clus
  PON3 MUTATED PON3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" "PON3 WILD-TYPE" 
    TCGA-AY-4071 
"PON3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PON3 MUTATED        8      6      0      0
  PON3 WILD-TYPE    170    177    101     20
D143V3, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            6            177
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PON3 MUTATED        4      3      5
  PON3 WILD-TYPE     83     77     95
D143V4, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PON3 MUTATED        2      3      7
  PON3 WILD-TYPE     87    157    131
D143V5, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PON3 MUTATED        7      2      3
  PON3 WILD-TYPE    175    131     69
D143V6, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PON3 MUTATED        4      3      4      3
  PON3 WILD-TYPE    108     93     88    183
D143V7, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            3             93
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PON3 MUTATED        2      1      4      2      2      1      2
  PON3 WILD-TYPE     58     49     45     38     61    124     97
D143V8, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PON3 MUTATED        5      2      3      4
  PON3 WILD-TYPE    125     76     65    192
D143V9, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            3             65
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PON3 MUTATED        0      3      2      1      2      0      4      0      2
  PON3 WILD-TYPE     40     59     26     79     67     48     39     28     72
D143V10, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PON3 MUTATED        1      0      3      3
  PON3 WILD-TYPE     32     31     24     16
D143V11, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            3             24
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PON3 MUTATED        3      0      2      2
  PON3 WILD-TYPE     51     10     22     20
D143V12, multiclass
        clus
vv       PON3 MUTATED PON3 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(144) Variable = SLAMF7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLAMF7 MUTATED        0      0      0      2
  SLAMF7 WILD-TYPE     46     58     64     41
D144V1, multiclass
[1] "Remove cluster labels:" "SLAMF7 MUTATED"        
clus
  SLAMF7 MUTATED SLAMF7 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AY-4071 
"SLAMF7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLAMF7 MUTATED        1      1      0
  SLAMF7 WILD-TYPE     50     82     77
D144V2, multiclass
[1] "Remove cluster labels:" "SLAMF7 MUTATED"        
clus
  SLAMF7 MUTATED SLAMF7 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AY-4071 
"SLAMF7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLAMF7 MUTATED        6      2      3      0
  SLAMF7 WILD-TYPE    172    181     98     20
D144V3, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLAMF7 MUTATED        4      1      4
  SLAMF7 WILD-TYPE     83     79     96
D144V4, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLAMF7 MUTATED        3      3      4
  SLAMF7 WILD-TYPE     86    157    134
D144V5, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLAMF7 MUTATED        6      3      1
  SLAMF7 WILD-TYPE    176    130     71
D144V6, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLAMF7 MUTATED        0      3      5      3
  SLAMF7 WILD-TYPE    112     93     87    183
D144V7, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              5               87
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLAMF7 MUTATED        0      2      2      0      4      0      3
  SLAMF7 WILD-TYPE     60     48     47     40     59    125     96
D144V8, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              4               59
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLAMF7 MUTATED        4      3      0      3
  SLAMF7 WILD-TYPE    126     75     68    193
D144V9, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLAMF7 MUTATED        2      3      1      2      1      0      0      0
  SLAMF7 WILD-TYPE     38     59     27     78     68     48     43     28
                  vv
clus               CLUS_9
  SLAMF7 MUTATED        1
  SLAMF7 WILD-TYPE     73
D144V10, multiclass
        clus
vv       SLAMF7 MUTATED SLAMF7 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLAMF7 MUTATED        0      2      0      0
  SLAMF7 WILD-TYPE     33     29     27     19
D144V11, multiclass
[1] "Remove cluster labels:" "SLAMF7 MUTATED"        
clus
  SLAMF7 MUTATED SLAMF7 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CL-5918 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F5-6464       TCGA-F5-6465 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLAMF7 MUTATED        2      0      0      0
  SLAMF7 WILD-TYPE     52     10     24     22
D144V12, multiclass
[1] "Remove cluster labels:" "SLAMF7 MUTATED"        
clus
  SLAMF7 MUTATED SLAMF7 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CL-5918 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F5-6464       TCGA-F5-6465 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" "SLAMF7 WILD-TYPE" 

Clustering(145) Variable = ATG5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG5 MUTATED        1      1      0      1
  ATG5 WILD-TYPE     45     57     64     42
D145V1, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATG5 MUTATED        1      1      1
  ATG5 WILD-TYPE     50     82     76
D145V2, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG5 MUTATED        5      2      1      1
  ATG5 WILD-TYPE    173    181    100     19
D145V3, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATG5 MUTATED        1      1      4
  ATG5 WILD-TYPE     86     79     96
D145V4, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATG5 MUTATED        0      5      2
  ATG5 WILD-TYPE     89    155    136
D145V5, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATG5 MUTATED        2      5      0
  ATG5 WILD-TYPE    180    128     72
D145V6, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG5 MUTATED        2      2      2      3
  ATG5 WILD-TYPE    110     94     90    183
D145V7, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATG5 MUTATED        3      0      4      0      0      1      1
  ATG5 WILD-TYPE     57     50     45     40     63    124     98
D145V8, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG5 MUTATED        4      0      0      4
  ATG5 WILD-TYPE    126     78     68    192
D145V9, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATG5 MUTATED        2      0      0      0      5      1      0      0      0
  ATG5 WILD-TYPE     38     62     28     80     64     47     43     28     74
D145V10, multiclass
        clus
vv       ATG5 MUTATED ATG5 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG5 MUTATED        0      0      0      0
  ATG5 WILD-TYPE     33     31     27     19
D145V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG5 MUTATED        0      0      0      0
  ATG5 WILD-TYPE     54     10     24     22
D145V12, multiclass

Clustering(146) Variable = SCAI MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAI MUTATED        2      0      0      1
  SCAI WILD-TYPE     44     58     64     42
D146V1, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCAI MUTATED        1      1      1
  SCAI WILD-TYPE     50     82     76
D146V2, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAI MUTATED        9      1      5      0
  SCAI WILD-TYPE    169    182     96     20
D146V3, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            5             96
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCAI MUTATED        3      1      7
  SCAI WILD-TYPE     84     79     93
D146V4, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCAI MUTATED        0      2      5
  SCAI WILD-TYPE     89    158    133
D146V5, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCAI MUTATED        5      2      0
  SCAI WILD-TYPE    177    131     72
D146V6, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAI MUTATED        4      3      4      4
  SCAI WILD-TYPE    108     93     88    182
D146V7, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            4            108
  CLUS_2            3             93
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCAI MUTATED        3      2      5      1      1      1      2
  SCAI WILD-TYPE     57     48     44     39     62    124     97
D146V8, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAI MUTATED        6      3      1      5
  SCAI WILD-TYPE    124     75     67    191
D146V9, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SCAI MUTATED        1      4      1      3      5      0      1      0      0
  SCAI WILD-TYPE     39     58     27     77     64     48     42     28     74
D146V10, multiclass
        clus
vv       SCAI MUTATED SCAI WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAI MUTATED        1      1      0      0
  SCAI WILD-TYPE     32     30     27     19
D146V11, multiclass
[1] "Remove cluster labels:" "SCAI MUTATED"          
clus
  SCAI MUTATED SCAI WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A28F     TCGA-DY-A1DC 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAI MUTATED        2      0      0      0
  SCAI WILD-TYPE     52     10     24     22
D146V12, multiclass
[1] "Remove cluster labels:" "SCAI MUTATED"          
clus
  SCAI MUTATED SCAI WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A28F     TCGA-DY-A1DC 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" "SCAI WILD-TYPE" 

Clustering(147) Variable = TAF7L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        0      1      0      2
  TAF7L WILD-TYPE     46     57     64     41
D147V1, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        0      1      2
  TAF7L WILD-TYPE     51     82     75
D147V2, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              51
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        8      2      3      0
  TAF7L WILD-TYPE    170    181     98     20
D147V3, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        4      1      5
  TAF7L WILD-TYPE     83     79     95
D147V4, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        1      3      5
  TAF7L WILD-TYPE     88    157    133
D147V5, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        5      3      1
  TAF7L WILD-TYPE    177    130     71
D147V6, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        2      6      2      3
  TAF7L WILD-TYPE    110     90     90    183
D147V7, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAF7L MUTATED        1      2      4      1      2      1      2
  TAF7L WILD-TYPE     59     48     45     39     61    124     97
D147V8, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        7      2      1      3
  TAF7L WILD-TYPE    123     76     67    193
D147V9, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TAF7L MUTATED        3      2      2      0      3      2      1      0
  TAF7L WILD-TYPE     37     60     26     80     66     46     42     28
                 vv
clus              CLUS_9
  TAF7L MUTATED        0
  TAF7L WILD-TYPE     74
D147V10, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        0      2      1      2
  TAF7L WILD-TYPE     33     29     26     17
D147V11, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        2      1      2      0
  TAF7L WILD-TYPE     52      9     22     22
D147V12, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(148) Variable = ECT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECT2 MUTATED        4      0      0      2
  ECT2 WILD-TYPE     42     58     64     41
D148V1, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECT2 MUTATED        4      0      2
  ECT2 WILD-TYPE     47     83     75
D148V2, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECT2 MUTATED       13      3      3      0
  ECT2 WILD-TYPE    165    180     98     20
D148V3, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECT2 MUTATED        4      4      5
  ECT2 WILD-TYPE     83     76     95
D148V4, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECT2 MUTATED        1      6      9
  ECT2 WILD-TYPE     88    154    129
D148V5, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECT2 MUTATED       10      3      3
  ECT2 WILD-TYPE    172    130     69
D148V6, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            3            130
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECT2 MUTATED        4      6      3      6
  ECT2 WILD-TYPE    108     90     89    180
D148V7, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ECT2 MUTATED        2      1      6      2      3      0      5
  ECT2 WILD-TYPE     58     49     43     38     60    125     94
D148V8, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECT2 MUTATED        8      4      1      5
  ECT2 WILD-TYPE    122     74     67    191
D148V9, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ECT2 MUTATED        2      5      1      1      6      0      3      0      0
  ECT2 WILD-TYPE     38     57     27     79     63     48     40     28     74
D148V10, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECT2 MUTATED        1      2      0      2
  ECT2 WILD-TYPE     32     29     27     17
D148V11, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECT2 MUTATED        3      1      1      0
  ECT2 WILD-TYPE     51      9     23     22
D148V12, multiclass
        clus
vv       ECT2 MUTATED ECT2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(149) Variable = DUSP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP1 MUTATED        1      0      0      0
  DUSP1 WILD-TYPE     45     58     64     43
D149V1, multiclass
[1] "Remove cluster labels:" "DUSP1 MUTATED"         
clus
  DUSP1 MUTATED DUSP1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3516      TCGA-AA-3517 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP1 MUTATED        1      0      0
  DUSP1 WILD-TYPE     50     83     77
D149V2, multiclass
[1] "Remove cluster labels:" "DUSP1 MUTATED"         
clus
  DUSP1 MUTATED DUSP1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3516      TCGA-AA-3517 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DUSP1 WILD-TYPE" "DUSP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP1 MUTATED        4      1      2      0
  DUSP1 WILD-TYPE    174    182     99     20
D149V3, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP1 MUTATED        1      2      3
  DUSP1 WILD-TYPE     86     78     97
D149V4, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP1 MUTATED        4      0      2
  DUSP1 WILD-TYPE     85    160    136
D149V5, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             0             160
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP1 MUTATED        4      1      1
  DUSP1 WILD-TYPE    178    132     71
D149V6, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP1 MUTATED        1      2      3      1
  DUSP1 WILD-TYPE    111     94     89    185
D149V7, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DUSP1 MUTATED        1      2      1      1      1      1      0
  DUSP1 WILD-TYPE     59     48     48     39     62    124     99
D149V8, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP1 MUTATED        5      2      0      0
  DUSP1 WILD-TYPE    125     76     68    196
D149V9, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DUSP1 MUTATED        3      1      1      1      0      0      1      0
  DUSP1 WILD-TYPE     37     61     27     79     69     48     42     28
                 vv
clus              CLUS_9
  DUSP1 MUTATED        0
  DUSP1 WILD-TYPE     74
D149V10, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP1 MUTATED        0      2      0      1
  DUSP1 WILD-TYPE     33     29     27     18
D149V11, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP1 MUTATED        3      0      0      0
  DUSP1 WILD-TYPE     51     10     24     22
D149V12, multiclass
        clus
vv       DUSP1 MUTATED DUSP1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(150) Variable = ZFX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFX MUTATED        4      0      0      1
  ZFX WILD-TYPE     42     58     64     42
D150V1, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           4            42
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZFX MUTATED        4      1      0
  ZFX WILD-TYPE     47     82     77
D150V2, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           4            47
  CLUS_2           1            82
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFX MUTATED        8      4      1      1
  ZFX WILD-TYPE    170    179    100     19
D150V3, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           8           170
  CLUS_2           4           179
  CLUS_3           1           100
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZFX MUTATED        2      2      5
  ZFX WILD-TYPE     85     78     95
D150V4, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           2            85
  CLUS_2           2            78
  CLUS_3           5            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZFX MUTATED        4      4      2
  ZFX WILD-TYPE     85    156    136
D150V5, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           4            85
  CLUS_2           4           156
  CLUS_3           2           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZFX MUTATED        4      4      2
  ZFX WILD-TYPE    178    129     70
D150V6, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           4           178
  CLUS_2           4           129
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFX MUTATED        2      5      2      5
  ZFX WILD-TYPE    110     91     90    181
D150V7, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           2           110
  CLUS_2           5            91
  CLUS_3           2            90
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFX MUTATED        1      2      4      1      1      0      5
  ZFX WILD-TYPE     59     48     45     39     62    125     94
D150V8, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           4            45
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFX MUTATED        4      2      1      7
  ZFX WILD-TYPE    126     76     67    189
D150V9, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           4           126
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZFX MUTATED        2      2      1      1      6      0      1      1      0
  ZFX WILD-TYPE     38     60     27     79     63     48     42     27     74
D150V10, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           1            27
  CLUS_4           1            79
  CLUS_5           6            63
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           1            27
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFX MUTATED        2      0      0      1
  ZFX WILD-TYPE     31     31     27     18
D150V11, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFX MUTATED        2      0      1      0
  ZFX WILD-TYPE     52     10     23     22
D150V12, multiclass
        clus
vv       ZFX MUTATED ZFX WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(151) Variable = ATP11B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        3      0      0      1
  ATP11B WILD-TYPE     43     58     64     42
D151V1, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        2      1      1
  ATP11B WILD-TYPE     49     82     76
D151V2, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED       13      4      2      0
  ATP11B WILD-TYPE    165    179     99     20
D151V3, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1             13              165
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        7      4      4
  ATP11B WILD-TYPE     80     76     96
D151V4, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              7               80
  CLUS_2              4               76
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        1      4     10
  ATP11B WILD-TYPE     88    156    128
D151V5, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11B MUTATED        9      5      1
  ATP11B WILD-TYPE    173    128     71
D151V6, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              9              173
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        4      7      4      4
  ATP11B WILD-TYPE    108     89     88    182
D151V7, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              4              108
  CLUS_2              7               89
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP11B MUTATED        3      2      5      3      2      1      3
  ATP11B WILD-TYPE     57     48     44     37     61    124     96
D151V8, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        9      3      1      6
  ATP11B WILD-TYPE    121     75     67    190
D151V9, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              9              121
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP11B MUTATED        2      4      3      2      4      2      0      1
  ATP11B WILD-TYPE     38     58     25     78     65     46     43     27
                  vv
clus               CLUS_9
  ATP11B MUTATED        1
  ATP11B WILD-TYPE     73
D151V10, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              3               25
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        2      1      1      2
  ATP11B WILD-TYPE     31     30     26     17
D151V11, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11B MUTATED        2      0      3      1
  ATP11B WILD-TYPE     52     10     21     21
D151V12, multiclass
        clus
vv       ATP11B MUTATED ATP11B WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(152) Variable = NEFH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        1      0      0      2
  NEFH WILD-TYPE     45     58     64     41
D152V1, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      1      1
  NEFH WILD-TYPE     50     82     76
D152V2, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        9      1      3      0
  NEFH WILD-TYPE    169    182     98     20
D152V3, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        5      1      4
  NEFH WILD-TYPE     82     79     96
D152V4, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        1      6      5
  NEFH WILD-TYPE     88    154    133
D152V5, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        5      5      2
  NEFH WILD-TYPE    177    128     70
D152V6, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            5            177
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        3      6      2      3
  NEFH WILD-TYPE    109     90     90    183
D152V7, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEFH MUTATED        5      1      4      1      1      0      2
  NEFH WILD-TYPE     55     49     45     39     62    125     97
D152V8, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            5             55
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        7      0      0      7
  NEFH WILD-TYPE    123     78     68    189
D152V9, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            7            123
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NEFH MUTATED        2      1      2      4      3      1      0      0      1
  NEFH WILD-TYPE     38     61     26     76     66     47     43     28     73
D152V10, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        0      1      1      0
  NEFH WILD-TYPE     33     30     26     19
D152V11, multiclass
[1] "Remove cluster labels:" "NEFH MUTATED"          
clus
  NEFH MUTATED NEFH WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AF-2687     TCGA-AF-4110 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        1      0      1      0
  NEFH WILD-TYPE     53     10     23     22
D152V12, multiclass
[1] "Remove cluster labels:" "NEFH MUTATED"          
clus
  NEFH MUTATED NEFH WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AF-2687     TCGA-AF-4110 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" "NEFH WILD-TYPE" 

Clustering(153) Variable = ECM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM2 MUTATED        3      0      0      2
  ECM2 WILD-TYPE     43     58     64     41
D153V1, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM2 MUTATED        4      0      1
  ECM2 WILD-TYPE     47     83     76
D153V2, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM2 MUTATED        9      5      1      3
  ECM2 WILD-TYPE    169    178    100     17
D153V3, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM2 MUTATED        9      0      6
  ECM2 WILD-TYPE     78     80     94
D153V4, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM2 MUTATED        3      7      8
  ECM2 WILD-TYPE     86    153    130
D153V5, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM2 MUTATED        9      6      3
  ECM2 WILD-TYPE    173    127     69
D153V6, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            6            127
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM2 MUTATED        3      5      6      6
  ECM2 WILD-TYPE    109     91     86    180
D153V7, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            6             86
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ECM2 MUTATED        2      3      4      1      3      1      6
  ECM2 WILD-TYPE     58     47     45     39     60    124     93
D153V8, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM2 MUTATED        8      3      0      8
  ECM2 WILD-TYPE    122     75     68    188
D153V9, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ECM2 MUTATED        3      2      1      4      4      1      0      1      3
  ECM2 WILD-TYPE     37     60     27     76     65     47     43     27     71
D153V10, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            4             76
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM2 MUTATED        1      1      0      1
  ECM2 WILD-TYPE     32     30     27     18
D153V11, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM2 MUTATED        1      0      1      1
  ECM2 WILD-TYPE     53     10     23     21
D153V12, multiclass
        clus
vv       ECM2 MUTATED ECM2 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(154) Variable = CHD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        4      0      0      6
  CHD3 WILD-TYPE     42     58     64     37
D154V1, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD3 MUTATED        8      1      1
  CHD3 WILD-TYPE     43     82     76
D154V2, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            8             43
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED       24      1      0      0
  CHD3 WILD-TYPE    154    182    101     20
D154V3, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1           24            154
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD3 MUTATED        5      1      9
  CHD3 WILD-TYPE     82     79     91
D154V4, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD3 MUTATED        5      6     13
  CHD3 WILD-TYPE     84    154    125
D154V5, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            6            154
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD3 MUTATED       13      5      6
  CHD3 WILD-TYPE    169    128     66
D154V6, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1           13            169
  CLUS_2            5            128
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        1      9      5     10
  CHD3 WILD-TYPE    111     87     87    176
D154V7, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            9             87
  CLUS_3            5             87
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHD3 MUTATED        1      1     12      1      1      0      9
  CHD3 WILD-TYPE     59     49     37     39     62    125     90
D154V8, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3           12             37
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        5      4      0     14
  CHD3 WILD-TYPE    125     74     68    182
D154V9, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4           14            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CHD3 MUTATED        2      5      1      0     14      0      0      0      1
  CHD3 WILD-TYPE     38     57     27     80     55     48     43     28     73
D154V10, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5           14             55
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        1      0      0      3
  CHD3 WILD-TYPE     32     31     27     16
D154V11, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        2      0      2      0
  CHD3 WILD-TYPE     52     10     22     22
D154V12, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(155) Variable = KLK10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK10 MUTATED        1      0      0      0
  KLK10 WILD-TYPE     45     58     64     43
D155V1, multiclass
[1] "Remove cluster labels:" "KLK10 MUTATED"         
clus
  KLK10 MUTATED KLK10 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK10 MUTATED        1      0      0
  KLK10 WILD-TYPE     50     83     77
D155V2, multiclass
[1] "Remove cluster labels:" "KLK10 MUTATED"         
clus
  KLK10 MUTATED KLK10 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"KLK10 WILD-TYPE" "KLK10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK10 MUTATED        4      2      0      1
  KLK10 WILD-TYPE    174    181    101     19
D155V3, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK10 MUTATED        3      1      3
  KLK10 WILD-TYPE     84     79     97
D155V4, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK10 MUTATED        0      1      5
  KLK10 WILD-TYPE     89    159    133
D155V5, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLK10 MUTATED        5      1      0
  KLK10 WILD-TYPE    177    132     72
D155V6, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK10 MUTATED        1      3      3      1
  KLK10 WILD-TYPE    111     93     89    185
D155V7, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLK10 MUTATED        1      0      4      1      1      0      1
  KLK10 WILD-TYPE     59     50     45     39     62    125     98
D155V8, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK10 MUTATED        4      2      1      1
  KLK10 WILD-TYPE    126     76     67    195
D155V9, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLK10 MUTATED        0      1      0      1      4      1      1      0
  KLK10 WILD-TYPE     40     61     28     79     65     47     42     28
                 vv
clus              CLUS_9
  KLK10 MUTATED        0
  KLK10 WILD-TYPE     74
D155V10, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK10 MUTATED        0      1      0      2
  KLK10 WILD-TYPE     33     30     27     17
D155V11, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLK10 MUTATED        2      0      1      0
  KLK10 WILD-TYPE     52     10     23     22
D155V12, multiclass
        clus
vv       KLK10 MUTATED KLK10 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(156) Variable = DST MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        8      1      1      6
  DST WILD-TYPE     38     57     63     37
D156V1, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           8            38
  CLUS_2           1            57
  CLUS_3           1            63
  CLUS_4           6            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED        9      4      3
  DST WILD-TYPE     42     79     74
D156V2, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           9            42
  CLUS_2           4            79
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED       43     25      7      1
  DST WILD-TYPE    135    158     94     19
D156V3, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          43           135
  CLUS_2          25           158
  CLUS_3           7            94
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED       24     11     25
  DST WILD-TYPE     63     69     75
D156V4, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          24            63
  CLUS_2          11            69
  CLUS_3          25            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED       10     22     32
  DST WILD-TYPE     79    138    106
D156V5, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          10            79
  CLUS_2          22           138
  CLUS_3          32           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DST MUTATED       40     17      7
  DST WILD-TYPE    142    116     65
D156V6, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          40           142
  CLUS_2          17           116
  CLUS_3           7            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED       12     21     26     18
  DST WILD-TYPE    100     75     66    168
D156V7, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          12           100
  CLUS_2          21            75
  CLUS_3          26            66
  CLUS_4          18           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DST MUTATED       10     13     21      5      8      5     15
  DST WILD-TYPE     50     37     28     35     55    120     84
D156V8, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          10            50
  CLUS_2          13            37
  CLUS_3          21            28
  CLUS_4           5            35
  CLUS_5           8            55
  CLUS_6           5           120
  CLUS_7          15            84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED       29     18      4     24
  DST WILD-TYPE    101     60     64    172
D156V9, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          29           101
  CLUS_2          18            60
  CLUS_3           4            64
  CLUS_4          24           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DST MUTATED        6     19      5      9     16      6      5      4      5
  DST WILD-TYPE     34     43     23     71     53     42     38     24     69
D156V10, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           6            34
  CLUS_2          19            43
  CLUS_3           5            23
  CLUS_4           9            71
  CLUS_5          16            53
  CLUS_6           6            42
  CLUS_7           5            38
  CLUS_8           4            24
  CLUS_9           5            69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED        4      7      4      7
  DST WILD-TYPE     29     24     23     12
D156V11, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1           4            29
  CLUS_2           7            24
  CLUS_3           4            23
  CLUS_4           7            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DST MUTATED       12      2      5      3
  DST WILD-TYPE     42      8     19     19
D156V12, multiclass
        clus
vv       DST MUTATED DST WILD-TYPE
  CLUS_1          12            42
  CLUS_2           2             8
  CLUS_3           5            19
  CLUS_4           3            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(157) Variable = NEUROD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD1 MUTATED        1      0      0      2
  NEUROD1 WILD-TYPE     45     58     64     41
D157V1, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NEUROD1 MUTATED        2      0      1
  NEUROD1 WILD-TYPE     49     83     76
D157V2, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD1 MUTATED        7      3      0      0
  NEUROD1 WILD-TYPE    171    180    101     20
D157V3, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NEUROD1 MUTATED        5      0      2
  NEUROD1 WILD-TYPE     82     80     98
D157V4, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NEUROD1 MUTATED        2      4      4
  NEUROD1 WILD-TYPE     87    156    134
D157V5, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NEUROD1 MUTATED        4      4      2
  NEUROD1 WILD-TYPE    178    129     70
D157V6, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD1 MUTATED        1      4      0      5
  NEUROD1 WILD-TYPE    111     92     92    181
D157V7, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               0                92
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEUROD1 MUTATED        1      2      0      1      1      1      4
  NEUROD1 WILD-TYPE     59     48     49     39     62    124     95
D157V8, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               0                49
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD1 MUTATED        3      0      0      7
  NEUROD1 WILD-TYPE    127     78     68    189
D157V9, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NEUROD1 MUTATED        1      0      1      2      4      0      0      0
  NEUROD1 WILD-TYPE     39     62     27     78     65     48     43     28
                   vv
clus                CLUS_9
  NEUROD1 MUTATED        2
  NEUROD1 WILD-TYPE     72
D157V10, multiclass
        clus
vv       NEUROD1 MUTATED NEUROD1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD1 MUTATED        0      0      0      0
  NEUROD1 WILD-TYPE     33     31     27     19
D157V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD1 MUTATED        0      0      0      0
  NEUROD1 WILD-TYPE     54     10     24     22
D157V12, multiclass

Clustering(158) Variable = KIAA1804 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        3      1      6      4
  KIAA1804 WILD-TYPE     43     57     58     39
D158V1, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                1                 57
  CLUS_3                6                 58
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        4      5      5
  KIAA1804 WILD-TYPE     47     78     72
D158V2, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                5                 78
  CLUS_3                5                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED       16      6      2      2
  KIAA1804 WILD-TYPE    162    177     99     18
D158V3, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1               16                162
  CLUS_2                6                177
  CLUS_3                2                 99
  CLUS_4                2                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        3      1      8
  KIAA1804 WILD-TYPE     84     79     92
D158V4, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                1                 79
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        3     13      7
  KIAA1804 WILD-TYPE     86    147    131
D158V5, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2               13                147
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        8     11      4
  KIAA1804 WILD-TYPE    174    122     68
D158V6, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                8                174
  CLUS_2               11                122
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        3      6      3     14
  KIAA1804 WILD-TYPE    109     90     89    172
D158V7, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                6                 90
  CLUS_3                3                 89
  CLUS_4               14                172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1804 MUTATED        3      0      6      1      1      5     10
  KIAA1804 WILD-TYPE     57     50     43     39     62    120     89
D158V8, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                0                 50
  CLUS_3                6                 43
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                5                120
  CLUS_7               10                 89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        6      2      1     17
  KIAA1804 WILD-TYPE    124     76     67    179
D158V9, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4               17                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1804 MUTATED        1      2      1      2      8      3      2      2
  KIAA1804 WILD-TYPE     39     60     27     78     61     45     41     26
                    vv
clus                 CLUS_9
  KIAA1804 MUTATED        5
  KIAA1804 WILD-TYPE     69
D158V10, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                8                 61
  CLUS_6                3                 45
  CLUS_7                2                 41
  CLUS_8                2                 26
  CLUS_9                5                 69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        1      0      0      2
  KIAA1804 WILD-TYPE     32     31     27     17
D158V11, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        2      0      1      0
  KIAA1804 WILD-TYPE     52     10     23     22
D158V12, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(159) Variable = PIK3IP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3IP1 MUTATED        0      1      0      0
  PIK3IP1 WILD-TYPE     46     57     64     43
D159V1, multiclass
[1] "Remove cluster labels:" "PIK3IP1 MUTATED"       
clus
  PIK3IP1 MUTATED PIK3IP1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3808        TCGA-A6-3809 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3IP1 MUTATED        0      1      0
  PIK3IP1 WILD-TYPE     51     82     77
D159V2, multiclass
[1] "Remove cluster labels:" "PIK3IP1 MUTATED"       
clus
  PIK3IP1 MUTATED PIK3IP1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3808        TCGA-A6-3809 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PIK3IP1 WILD-TYPE" "PIK3IP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3IP1 MUTATED        6      2      0      1
  PIK3IP1 WILD-TYPE    172    181    101     19
D159V3, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3IP1 MUTATED        4      0      4
  PIK3IP1 WILD-TYPE     83     80     96
D159V4, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3IP1 MUTATED        1      2      5
  PIK3IP1 WILD-TYPE     88    158    133
D159V5, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3IP1 MUTATED        6      2      0
  PIK3IP1 WILD-TYPE    176    131     72
D159V6, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3IP1 MUTATED        0      5      3      1
  PIK3IP1 WILD-TYPE    112     91     89    185
D159V7, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3IP1 MUTATED        1      2      4      1      0      1      0
  PIK3IP1 WILD-TYPE     59     48     45     39     63    124     99
D159V8, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3IP1 MUTATED        7      1      1      0
  PIK3IP1 WILD-TYPE    123     77     67    196
D159V9, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3IP1 MUTATED        1      1      1      0      3      1      1      0
  PIK3IP1 WILD-TYPE     39     61     27     80     66     47     42     28
                   vv
clus                CLUS_9
  PIK3IP1 MUTATED        1
  PIK3IP1 WILD-TYPE     73
D159V10, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3IP1 MUTATED        1      0      1      1
  PIK3IP1 WILD-TYPE     32     31     26     18
D159V11, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3IP1 MUTATED        2      0      1      0
  PIK3IP1 WILD-TYPE     52     10     23     22
D159V12, multiclass
        clus
vv       PIK3IP1 MUTATED PIK3IP1 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(160) Variable = C10ORF79 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF79 MUTATED        1      1      0      6
  C10ORF79 WILD-TYPE     45     57     64     37
D160V1, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                6                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF79 MUTATED        4      2      2
  C10ORF79 WILD-TYPE     47     81     75
D160V2, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF79 MUTATED       19      6      7      0
  C10ORF79 WILD-TYPE    159    177     94     20
D160V3, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1               19                159
  CLUS_2                6                177
  CLUS_3                7                 94
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF79 MUTATED       11      6      6
  C10ORF79 WILD-TYPE     76     74     94
D160V4, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1               11                 76
  CLUS_2                6                 74
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF79 MUTATED        4     12     11
  C10ORF79 WILD-TYPE     85    148    127
D160V5, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2               12                148
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF79 MUTATED       12     13      2
  C10ORF79 WILD-TYPE    170    120     70
D160V6, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1               12                170
  CLUS_2               13                120
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF79 MUTATED        5      8      9     10
  C10ORF79 WILD-TYPE    107     88     83    176
D160V7, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                5                107
  CLUS_2                8                 88
  CLUS_3                9                 83
  CLUS_4               10                176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C10ORF79 MUTATED        5      6      6      1      4      1      9
  C10ORF79 WILD-TYPE     55     44     43     39     59    124     90
D160V8, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                5                 55
  CLUS_2                6                 44
  CLUS_3                6                 43
  CLUS_4                1                 39
  CLUS_5                4                 59
  CLUS_6                1                124
  CLUS_7                9                 90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF79 MUTATED        8      9      3     10
  C10ORF79 WILD-TYPE    122     69     65    186
D160V9, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                8                122
  CLUS_2                9                 69
  CLUS_3                3                 65
  CLUS_4               10                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C10ORF79 MUTATED        4      8      3      3      6      0      3      1
  C10ORF79 WILD-TYPE     36     54     25     77     63     48     40     27
                    vv
clus                 CLUS_9
  C10ORF79 MUTATED        2
  C10ORF79 WILD-TYPE     72
D160V10, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                8                 54
  CLUS_3                3                 25
  CLUS_4                3                 77
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF79 MUTATED        3      1      2      3
  C10ORF79 WILD-TYPE     30     30     25     16
D160V11, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 30
  CLUS_3                2                 25
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF79 MUTATED        6      0      3      0
  C10ORF79 WILD-TYPE     48     10     21     22
D160V12, multiclass
        clus
vv       C10ORF79 MUTATED C10ORF79 WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                0                 10
  CLUS_3                3                 21
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(161) Variable = KRT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        1      0      0      0
  KRT2 WILD-TYPE     45     58     64     43
D161V1, multiclass
[1] "Remove cluster labels:" "KRT2 MUTATED"          
clus
  KRT2 MUTATED KRT2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        0      1      0
  KRT2 WILD-TYPE     51     82     77
D161V2, multiclass
[1] "Remove cluster labels:" "KRT2 MUTATED"          
clus
  KRT2 MUTATED KRT2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"KRT2 WILD-TYPE" "KRT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        7      3      5      0
  KRT2 WILD-TYPE    171    180     96     20
D161V3, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            3            180
  CLUS_3            5             96
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        3      4      7
  KRT2 WILD-TYPE     84     76     93
D161V4, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            4             76
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        0      6      6
  KRT2 WILD-TYPE     89    154    132
D161V5, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT2 MUTATED        8      3      1
  KRT2 WILD-TYPE    174    130     71
D161V6, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        3      4      7      1
  KRT2 WILD-TYPE    109     92     85    185
D161V7, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            7             85
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT2 MUTATED        0      2      4      2      6      1      0
  KRT2 WILD-TYPE     60     48     45     38     57    124     99
D161V8, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            6             57
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        5      6      2      2
  KRT2 WILD-TYPE    125     72     66    194
D161V9, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KRT2 MUTATED        3      6      2      2      1      0      1      0      0
  KRT2 WILD-TYPE     37     56     26     78     68     48     42     28     74
D161V10, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        2      1      0      1
  KRT2 WILD-TYPE     31     30     27     18
D161V11, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT2 MUTATED        2      1      0      1
  KRT2 WILD-TYPE     52      9     24     21
D161V12, multiclass
        clus
vv       KRT2 MUTATED KRT2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(162) Variable = HTR2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR2A MUTATED        0      0      0      3
  HTR2A WILD-TYPE     46     58     64     40
D162V1, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR2A MUTATED        1      1      1
  HTR2A WILD-TYPE     50     82     76
D162V2, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR2A MUTATED       10      8      4      1
  HTR2A WILD-TYPE    168    175     97     19
D162V3, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1            10             168
  CLUS_2             8             175
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR2A MUTATED        6      6      8
  HTR2A WILD-TYPE     81     74     92
D162V4, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             6              81
  CLUS_2             6              74
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR2A MUTATED        1     11     10
  HTR2A WILD-TYPE     88    149    128
D162V5, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             1              88
  CLUS_2            11             149
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR2A MUTATED       11      8      3
  HTR2A WILD-TYPE    171    125     69
D162V6, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1            11             171
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR2A MUTATED        7      6      7      3
  HTR2A WILD-TYPE    105     90     85    183
D162V7, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             7             105
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTR2A MUTATED        7      5      5      2      2      0      2
  HTR2A WILD-TYPE     53     45     44     38     61    125     97
D162V8, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             7              53
  CLUS_2             5              45
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR2A MUTATED       12      4      3      3
  HTR2A WILD-TYPE    118     74     65    193
D162V9, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1            12             118
  CLUS_2             4              74
  CLUS_3             3              65
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HTR2A MUTATED        4      3      1      6      4      1      3      0
  HTR2A WILD-TYPE     36     59     27     74     65     47     40     28
                 vv
clus              CLUS_9
  HTR2A MUTATED        0
  HTR2A WILD-TYPE     74
D162V10, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             6              74
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR2A MUTATED        3      2      2      2
  HTR2A WILD-TYPE     30     29     25     17
D162V11, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR2A MUTATED        3      0      4      2
  HTR2A WILD-TYPE     51     10     20     20
D162V12, multiclass
        clus
vv       HTR2A MUTATED HTR2A WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(163) Variable = PTK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTK2 MUTATED        1      0      0      3
  PTK2 WILD-TYPE     45     58     64     40
D163V1, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTK2 MUTATED        3      1      0
  PTK2 WILD-TYPE     48     82     77
D163V2, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTK2 MUTATED       15      4      2      0
  PTK2 WILD-TYPE    163    179     99     20
D163V3, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTK2 MUTATED        6      1     10
  PTK2 WILD-TYPE     81     79     90
D163V4, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTK2 MUTATED        0     10      8
  PTK2 WILD-TYPE     89    150    130
D163V5, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2           10            150
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTK2 MUTATED        6     11      1
  PTK2 WILD-TYPE    176    122     71
D163V6, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2           11            122
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTK2 MUTATED        3     10      4      4
  PTK2 WILD-TYPE    109     86     88    182
D163V7, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2           10             86
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTK2 MUTATED        2      6      6      2      1      0      4
  PTK2 WILD-TYPE     58     44     43     38     62    125     95
D163V8, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            6             44
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTK2 MUTATED        9      3      1      8
  PTK2 WILD-TYPE    121     75     67    188
D163V9, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PTK2 MUTATED        3      4      2      3      5      1      1      1      1
  PTK2 WILD-TYPE     37     58     26     77     64     47     42     27     73
D163V10, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTK2 MUTATED        2      1      0      2
  PTK2 WILD-TYPE     31     30     27     17
D163V11, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTK2 MUTATED        3      1      0      1
  PTK2 WILD-TYPE     51      9     24     21
D163V12, multiclass
        clus
vv       PTK2 MUTATED PTK2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(164) Variable = AXIN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        3      3      0      2
  AXIN2 WILD-TYPE     43     55     64     41
D164V1, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             3              55
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED        3      3      2
  AXIN2 WILD-TYPE     48     80     75
D164V2, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED       17      5      2      0
  AXIN2 WILD-TYPE    161    178     99     20
D164V3, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED        7      2      6
  AXIN2 WILD-TYPE     80     78     94
D164V4, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED        2     10     10
  AXIN2 WILD-TYPE     87    150    128
D164V5, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            10             150
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED        9      9      4
  AXIN2 WILD-TYPE    173    124     68
D164V6, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        2      6      7      9
  AXIN2 WILD-TYPE    110     90     85    177
D164V7, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AXIN2 MUTATED        3      3      8      1      1      3      5
  AXIN2 WILD-TYPE     57     47     41     39     62    122     94
D164V8, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        9      3      2      9
  AXIN2 WILD-TYPE    121     75     66    187
D164V9, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AXIN2 MUTATED        2      5      3      2      5      0      3      2
  AXIN2 WILD-TYPE     38     57     25     78     64     48     40     26
                 vv
clus              CLUS_9
  AXIN2 MUTATED        1
  AXIN2 WILD-TYPE     73
D164V10, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        1      0      0      3
  AXIN2 WILD-TYPE     32     31     27     16
D164V11, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        4      0      0      0
  AXIN2 WILD-TYPE     50     10     24     22
D164V12, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(165) Variable = TM9SF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF2 MUTATED        1      0      0      1
  TM9SF2 WILD-TYPE     45     58     64     42
D165V1, multiclass
[1] "Remove cluster labels:" "TM9SF2 MUTATED"        
clus
  TM9SF2 MUTATED TM9SF2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00U       TCGA-AA-A00W 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AY-4071 
"TM9SF2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM9SF2 MUTATED        1      0      1
  TM9SF2 WILD-TYPE     50     83     76
D165V2, multiclass
[1] "Remove cluster labels:" "TM9SF2 MUTATED"        
clus
  TM9SF2 MUTATED TM9SF2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00U       TCGA-AA-A00W 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" "TM9SF2 WILD-TYPE" 
      TCGA-AY-4071 
"TM9SF2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF2 MUTATED       10      1      0      0
  TM9SF2 WILD-TYPE    168    182    101     20
D165V3, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM9SF2 MUTATED        3      0      5
  TM9SF2 WILD-TYPE     84     80     95
D165V4, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM9SF2 MUTATED        0      6      2
  TM9SF2 WILD-TYPE     89    154    136
D165V5, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM9SF2 MUTATED        3      5      0
  TM9SF2 WILD-TYPE    179    128     72
D165V6, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF2 MUTATED        1      4      2      4
  TM9SF2 WILD-TYPE    111     92     90    182
D165V7, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TM9SF2 MUTATED        1      1      4      1      0      0      4
  TM9SF2 WILD-TYPE     59     49     45     39     63    125     95
D165V8, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF2 MUTATED        6      1      0      3
  TM9SF2 WILD-TYPE    124     77     68    193
D165V9, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TM9SF2 MUTATED        3      0      1      2      2      0      1      0
  TM9SF2 WILD-TYPE     37     62     27     78     67     48     42     28
                  vv
clus               CLUS_9
  TM9SF2 MUTATED        1
  TM9SF2 WILD-TYPE     73
D165V10, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF2 MUTATED        2      0      0      2
  TM9SF2 WILD-TYPE     31     31     27     17
D165V11, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF2 MUTATED        3      0      1      0
  TM9SF2 WILD-TYPE     51     10     23     22
D165V12, multiclass
        clus
vv       TM9SF2 MUTATED TM9SF2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(166) Variable = FAHD2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        1      0      0      0
  FAHD2A WILD-TYPE     45     58     64     43
D166V1, multiclass
[1] "Remove cluster labels:" "FAHD2A MUTATED"        
clus
  FAHD2A MUTATED FAHD2A WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2A MUTATED        1      0      0
  FAHD2A WILD-TYPE     50     83     77
D166V2, multiclass
[1] "Remove cluster labels:" "FAHD2A MUTATED"        
clus
  FAHD2A MUTATED FAHD2A WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FAHD2A WILD-TYPE" "FAHD2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        6      1      0      0
  FAHD2A WILD-TYPE    172    182    101     20
D166V3, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2A MUTATED        1      1      4
  FAHD2A WILD-TYPE     86     79     96
D166V4, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2A MUTATED        0      1      6
  FAHD2A WILD-TYPE     89    159    132
D166V5, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2A MUTATED        6      1      0
  FAHD2A WILD-TYPE    176    132     72
D166V6, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        1      3      2      1
  FAHD2A WILD-TYPE    111     93     90    185
D166V7, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAHD2A MUTATED        1      0      5      0      0      0      1
  FAHD2A WILD-TYPE     59     50     44     40     63    125     98
D166V8, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        4      0      0      3
  FAHD2A WILD-TYPE    126     78     68    193
D166V9, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAHD2A MUTATED        1      1      0      0      3      1      1      0
  FAHD2A WILD-TYPE     39     61     28     80     66     47     42     28
                  vv
clus               CLUS_9
  FAHD2A MUTATED        0
  FAHD2A WILD-TYPE     74
D166V10, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        0      0      0      4
  FAHD2A WILD-TYPE     33     31     27     15
D166V11, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        1      0      2      1
  FAHD2A WILD-TYPE     53     10     22     21
D166V12, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(167) Variable = KCNK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK1 MUTATED        1      0      1      0
  KCNK1 WILD-TYPE     45     58     63     43
D167V1, multiclass
[1] "Remove cluster labels:" "KCNK1 MUTATED"         
clus
  KCNK1 MUTATED KCNK1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3999      TCGA-AG-4001 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AY-4071 
"KCNK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNK1 MUTATED        1      1      0
  KCNK1 WILD-TYPE     50     82     77
D167V2, multiclass
[1] "Remove cluster labels:" "KCNK1 MUTATED"         
clus
  KCNK1 MUTATED KCNK1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3999      TCGA-AG-4001 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AY-4071 
"KCNK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK1 MUTATED        4      6      1      0
  KCNK1 WILD-TYPE    174    177    100     20
D167V3, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             6             177
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNK1 MUTATED        3      2      4
  KCNK1 WILD-TYPE     84     78     96
D167V4, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNK1 MUTATED        1      4      4
  KCNK1 WILD-TYPE     88    156    134
D167V5, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNK1 MUTATED        5      3      1
  KCNK1 WILD-TYPE    177    130     71
D167V6, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK1 MUTATED        5      2      2      2
  KCNK1 WILD-TYPE    107     94     90    184
D167V7, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNK1 MUTATED        1      0      3      2      3      1      1
  KCNK1 WILD-TYPE     59     50     46     38     60    124     98
D167V8, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK1 MUTATED        4      4      1      2
  KCNK1 WILD-TYPE    126     74     67    194
D167V9, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCNK1 MUTATED        2      1      1      1      3      1      0      1
  KCNK1 WILD-TYPE     38     61     27     79     66     47     43     27
                 vv
clus              CLUS_9
  KCNK1 MUTATED        1
  KCNK1 WILD-TYPE     73
D167V10, multiclass
        clus
vv       KCNK1 MUTATED KCNK1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK1 MUTATED        2      0      0      0
  KCNK1 WILD-TYPE     31     31     27     19
D167V11, multiclass
[1] "Remove cluster labels:" "KCNK1 MUTATED"         
clus
  KCNK1 MUTATED KCNK1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6680      TCGA-D5-5537 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK1 MUTATED        2      0      0      0
  KCNK1 WILD-TYPE     52     10     24     22
D167V12, multiclass
[1] "Remove cluster labels:" "KCNK1 MUTATED"         
clus
  KCNK1 MUTATED KCNK1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6680      TCGA-D5-5537 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" "KCNK1 WILD-TYPE" 

Clustering(168) Variable = C15ORF52 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        3      0      0      0
  C15ORF52 WILD-TYPE     43     58     64     43
D168V1, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                0                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        3      0      0
  C15ORF52 WILD-TYPE     48     83     77
D168V2, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                0                 83
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED       12      0      0      0
  C15ORF52 WILD-TYPE    166    183    101     20
D168V3, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1               12                166
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        2      0      7
  C15ORF52 WILD-TYPE     85     80     93
D168V4, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        2      3      4
  C15ORF52 WILD-TYPE     87    157    134
D168V5, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                3                157
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        3      4      2
  C15ORF52 WILD-TYPE    179    129     70
D168V6, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        1      7      1      3
  C15ORF52 WILD-TYPE    111     89     91    183
D168V7, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                7                 89
  CLUS_3                1                 91
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C15ORF52 MUTATED        1      1      7      0      0      0      3
  C15ORF52 WILD-TYPE     59     49     42     40     63    125     96
D168V8, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                7                 42
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        5      2      0      5
  C15ORF52 WILD-TYPE    125     76     68    191
D168V9, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C15ORF52 MUTATED        2      0      0      1      7      1      0      1
  C15ORF52 WILD-TYPE     38     62     28     79     62     47     43     27
                    vv
clus                 CLUS_9
  C15ORF52 MUTATED        0
  C15ORF52 WILD-TYPE     74
D168V10, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 62
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                7                 62
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        2      0      0      2
  C15ORF52 WILD-TYPE     31     31     27     17
D168V11, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        2      0      2      0
  C15ORF52 WILD-TYPE     52     10     22     22
D168V12, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(169) Variable = HAUS6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        3      0      0      2
  HAUS6 WILD-TYPE     43     58     64     41
D169V1, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        3      1      1
  HAUS6 WILD-TYPE     48     82     76
D169V2, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED       10      7      0      0
  HAUS6 WILD-TYPE    168    176    101     20
D169V3, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             7             176
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        4      3      5
  HAUS6 WILD-TYPE     83     77     95
D169V4, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        2      4      7
  HAUS6 WILD-TYPE     87    156    131
D169V5, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        5      5      3
  HAUS6 WILD-TYPE    177    128     69
D169V6, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        4      4      3      6
  HAUS6 WILD-TYPE    108     92     89    180
D169V7, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HAUS6 MUTATED        3      2      3      2      1      3      3
  HAUS6 WILD-TYPE     57     48     46     38     62    122     96
D169V8, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        6      0      3      8
  HAUS6 WILD-TYPE    124     78     65    188
D169V9, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             3              65
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HAUS6 MUTATED        1      2      2      1      4      3      1      1
  HAUS6 WILD-TYPE     39     60     26     79     65     45     42     27
                 vv
clus              CLUS_9
  HAUS6 MUTATED        2
  HAUS6 WILD-TYPE     72
D169V10, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        1      1      2      1
  HAUS6 WILD-TYPE     32     30     25     18
D169V11, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        2      0      1      2
  HAUS6 WILD-TYPE     52     10     23     20
D169V12, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(170) Variable = TUBA4A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBA4A MUTATED        1      1      0      1
  TUBA4A WILD-TYPE     45     57     64     42
D170V1, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TUBA4A MUTATED        1      1      1
  TUBA4A WILD-TYPE     50     82     76
D170V2, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBA4A MUTATED        8      1      2      1
  TUBA4A WILD-TYPE    170    182     99     19
D170V3, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              8              170
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TUBA4A MUTATED        2      2      5
  TUBA4A WILD-TYPE     85     78     95
D170V4, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TUBA4A MUTATED        0      3      5
  TUBA4A WILD-TYPE     89    157    133
D170V5, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TUBA4A MUTATED        5      3      0
  TUBA4A WILD-TYPE    177    130     72
D170V6, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBA4A MUTATED        1      5      3      3
  TUBA4A WILD-TYPE    111     91     89    183
D170V7, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TUBA4A MUTATED        2      1      5      1      1      1      1
  TUBA4A WILD-TYPE     58     49     44     39     62    124     98
D170V8, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBA4A MUTATED        7      1      1      3
  TUBA4A WILD-TYPE    123     77     67    193
D170V9, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              7              123
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TUBA4A MUTATED        2      4      0      1      3      1      0      0
  TUBA4A WILD-TYPE     38     58     28     79     66     47     43     28
                  vv
clus               CLUS_9
  TUBA4A MUTATED        1
  TUBA4A WILD-TYPE     73
D170V10, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBA4A MUTATED        1      1      0      2
  TUBA4A WILD-TYPE     32     30     27     17
D170V11, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBA4A MUTATED        3      0      0      1
  TUBA4A WILD-TYPE     51     10     24     21
D170V12, multiclass
        clus
vv       TUBA4A MUTATED TUBA4A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(171) Variable = MBD6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        0      1      0      2
  MBD6 WILD-TYPE     46     57     64     41
D171V1, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED        1      2      0
  MBD6 WILD-TYPE     50     81     77
D171V2, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED       13      3      0      0
  MBD6 WILD-TYPE    165    180    101     20
D171V3, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED        4      2      6
  MBD6 WILD-TYPE     83     78     94
D171V4, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED        2      5      7
  MBD6 WILD-TYPE     87    155    131
D171V5, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED        7      6      1
  MBD6 WILD-TYPE    175    127     71
D171V6, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        2      5      5      4
  MBD6 WILD-TYPE    110     91     87    182
D171V7, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MBD6 MUTATED        1      2      9      0      0      1      3
  MBD6 WILD-TYPE     59     48     40     40     63    124     96
D171V8, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            9             40
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        7      3      2      3
  MBD6 WILD-TYPE    123     75     66    193
D171V9, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MBD6 MUTATED        0      4      3      1      6      0      1      0      0
  MBD6 WILD-TYPE     40     58     25     79     63     48     42     28     74
D171V10, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        0      0      0      2
  MBD6 WILD-TYPE     33     31     27     17
D171V11, multiclass
[1] "Remove cluster labels:" "MBD6 MUTATED"          
clus
  MBD6 MUTATED MBD6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        1      0      1      0
  MBD6 WILD-TYPE     53     10     23     22
D171V12, multiclass
[1] "Remove cluster labels:" "MBD6 MUTATED"          
clus
  MBD6 MUTATED MBD6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 

Clustering(172) Variable = TFE3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        2      0      1      0
  TFE3 WILD-TYPE     44     58     63     43
D172V1, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        2      1      0
  TFE3 WILD-TYPE     49     82     77
D172V2, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED       10      0      1      0
  TFE3 WILD-TYPE    168    183    100     20
D172V3, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        3      0      5
  TFE3 WILD-TYPE     84     80     95
D172V4, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        1      3      6
  TFE3 WILD-TYPE     88    157    132
D172V5, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        4      4      2
  TFE3 WILD-TYPE    178    129     70
D172V6, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        0      6      2      3
  TFE3 WILD-TYPE    112     90     90    183
D172V7, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TFE3 MUTATED        0      0      7      1      0      1      2
  TFE3 WILD-TYPE     60     50     42     39     63    124     97
D172V8, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            7             42
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        4      2      0      5
  TFE3 WILD-TYPE    126     76     68    191
D172V9, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TFE3 MUTATED        2      2      0      1      6      0      0      0      0
  TFE3 WILD-TYPE     38     60     28     79     63     48     43     28     74
D172V10, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        0      0      0      1
  TFE3 WILD-TYPE     33     31     27     18
D172V11, multiclass
[1] "Remove cluster labels:" "TFE3 MUTATED"          
clus
  TFE3 MUTATED TFE3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-G5-6641 
"TFE3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        0      0      1      0
  TFE3 WILD-TYPE     54     10     23     22
D172V12, multiclass
[1] "Remove cluster labels:" "TFE3 MUTATED"          
clus
  TFE3 MUTATED TFE3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" "TFE3 WILD-TYPE" 
    TCGA-G5-6641 
"TFE3 WILD-TYPE" 

Clustering(173) Variable = NCAPD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD2 MUTATED        2      0      0      4
  NCAPD2 WILD-TYPE     44     58     64     39
D173V1, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD2 MUTATED        2      2      2
  NCAPD2 WILD-TYPE     49     81     75
D173V2, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD2 MUTATED       19      0      2      0
  NCAPD2 WILD-TYPE    159    183     99     20
D173V3, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD2 MUTATED        8      0      7
  NCAPD2 WILD-TYPE     79     80     93
D173V4, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD2 MUTATED        1      4     12
  NCAPD2 WILD-TYPE     88    156    126
D173V5, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD2 MUTATED       13      4      0
  NCAPD2 WILD-TYPE    169    129     72
D173V6, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD2 MUTATED        0      8      6      7
  NCAPD2 WILD-TYPE    112     88     86    179
D173V7, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              8               88
  CLUS_3              6               86
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCAPD2 MUTATED        0      5      9      0      0      2      5
  NCAPD2 WILD-TYPE     60     45     40     40     63    123     94
D173V8, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              5               45
  CLUS_3              9               40
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD2 MUTATED        7      3      1      8
  NCAPD2 WILD-TYPE    123     75     67    188
D173V9, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NCAPD2 MUTATED        0      4      5      1      5      0      2      0
  NCAPD2 WILD-TYPE     40     58     23     79     64     48     41     28
                  vv
clus               CLUS_9
  NCAPD2 MUTATED        2
  NCAPD2 WILD-TYPE     72
D173V10, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              4               58
  CLUS_3              5               23
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD2 MUTATED        1      0      1      3
  NCAPD2 WILD-TYPE     32     31     26     16
D173V11, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD2 MUTATED        3      0      2      0
  NCAPD2 WILD-TYPE     51     10     22     22
D173V12, multiclass
        clus
vv       NCAPD2 MUTATED NCAPD2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(174) Variable = NCOA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA6 MUTATED        3      1      0      4
  NCOA6 WILD-TYPE     43     57     64     39
D174V1, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA6 MUTATED        5      2      1
  NCOA6 WILD-TYPE     46     81     76
D174V2, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA6 MUTATED       19      3      6      1
  NCOA6 WILD-TYPE    159    180     95     19
D174V3, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             3             180
  CLUS_3             6              95
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA6 MUTATED        8      3     10
  NCOA6 WILD-TYPE     79     77     90
D174V4, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA6 MUTATED        3     10     11
  NCOA6 WILD-TYPE     86    150    127
D174V5, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            10             150
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA6 MUTATED       15      6      3
  NCOA6 WILD-TYPE    167    127     69
D174V6, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1            15             167
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA6 MUTATED        5      6     10      8
  NCOA6 WILD-TYPE    107     90     82    178
D174V7, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3            10              82
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOA6 MUTATED        5      2      9      1      4      1      7
  NCOA6 WILD-TYPE     55     48     40     39     59    124     92
D174V8, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             2              48
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA6 MUTATED       10      6      3      9
  NCOA6 WILD-TYPE    120     72     65    187
D174V9, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             6              72
  CLUS_3             3              65
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NCOA6 MUTATED        1      6      2      5     10      1      2      0
  NCOA6 WILD-TYPE     39     56     26     75     59     47     41     28
                 vv
clus              CLUS_9
  NCOA6 MUTATED        1
  NCOA6 WILD-TYPE     73
D174V10, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5            10              59
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA6 MUTATED        3      1      2      3
  NCOA6 WILD-TYPE     30     30     25     16
D174V11, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA6 MUTATED        7      0      1      1
  NCOA6 WILD-TYPE     47     10     23     21
D174V12, multiclass
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(175) Variable = SVIL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        3      1      0      3
  SVIL WILD-TYPE     43     57     64     40
D175V1, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED        4      2      1
  SVIL WILD-TYPE     47     81     76
D175V2, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED       30      0      4      0
  SVIL WILD-TYPE    148    183     97     20
D175V3, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           30            148
  CLUS_2            0            183
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED        6      3     18
  SVIL WILD-TYPE     81     77     82
D175V4, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            6             81
  CLUS_2            3             77
  CLUS_3           18             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED        5      9     17
  SVIL WILD-TYPE     84    151    121
D175V5, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            5             84
  CLUS_2            9            151
  CLUS_3           17            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED       18      9      4
  SVIL WILD-TYPE    164    124     68
D175V6, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           18            164
  CLUS_2            9            124
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        3     12     11      8
  SVIL WILD-TYPE    109     84     81    178
D175V7, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            3            109
  CLUS_2           12             84
  CLUS_3           11             81
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SVIL MUTATED        3      4     18      1      1      1      6
  SVIL WILD-TYPE     57     46     31     39     62    124     93
D175V8, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3           18             31
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED       17      4      0     13
  SVIL WILD-TYPE    113     74     68    183
D175V9, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           17            113
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SVIL MUTATED        5      7      1      6     13      0      1      0      1
  SVIL WILD-TYPE     35     55     27     74     56     48     42     28     73
D175V10, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            5             35
  CLUS_2            7             55
  CLUS_3            1             27
  CLUS_4            6             74
  CLUS_5           13             56
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        2      1      0      9
  SVIL WILD-TYPE     31     30     27     10
D175V11, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            9             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        7      1      4      0
  SVIL WILD-TYPE     47      9     20     22
D175V12, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            7             47
  CLUS_2            1              9
  CLUS_3            4             20
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(176) Variable = XYLT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        1      0      0      0
  XYLT2 WILD-TYPE     45     58     64     43
D176V1, multiclass
[1] "Remove cluster labels:" "XYLT2 MUTATED"         
clus
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED        1      0      0
  XYLT2 WILD-TYPE     50     83     77
D176V2, multiclass
[1] "Remove cluster labels:" "XYLT2 MUTATED"         
clus
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED       13      0      1      0
  XYLT2 WILD-TYPE    165    183    100     20
D176V3, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED        2      1     10
  XYLT2 WILD-TYPE     85     79     90
D176V4, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED        1      5      7
  XYLT2 WILD-TYPE     88    155    131
D176V5, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED        7      6      0
  XYLT2 WILD-TYPE    175    127     72
D176V6, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        0      9      4      1
  XYLT2 WILD-TYPE    112     87     88    185
D176V7, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             9              87
  CLUS_3             4              88
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XYLT2 MUTATED        0      1     10      0      1      0      2
  XYLT2 WILD-TYPE     60     49     39     40     62    125     97
D176V8, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3            10              39
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        9      1      0      4
  XYLT2 WILD-TYPE    121     77     68    192
D176V9, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XYLT2 MUTATED        2      3      0      0      6      0      1      1
  XYLT2 WILD-TYPE     38     59     28     80     63     48     42     27
                 vv
clus              CLUS_9
  XYLT2 MUTATED        1
  XYLT2 WILD-TYPE     73
D176V10, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        1      0      0      3
  XYLT2 WILD-TYPE     32     31     27     16
D176V11, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        3      0      1      0
  XYLT2 WILD-TYPE     51     10     23     22
D176V12, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(177) Variable = ZNF789 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF789 MUTATED        1      0      0      1
  ZNF789 WILD-TYPE     45     58     64     42
D177V1, multiclass
[1] "Remove cluster labels:" "ZNF789 MUTATED"        
clus
  ZNF789 MUTATED ZNF789 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF789 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF789 MUTATED        2      0      0
  ZNF789 WILD-TYPE     49     83     77
D177V2, multiclass
[1] "Remove cluster labels:" "ZNF789 MUTATED"        
clus
  ZNF789 MUTATED ZNF789 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" "ZNF789 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF789 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF789 MUTATED        5      1      1      0
  ZNF789 WILD-TYPE    173    182    100     20
D177V3, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF789 MUTATED        3      1      1
  ZNF789 WILD-TYPE     84     79     99
D177V4, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF789 MUTATED        0      0      6
  ZNF789 WILD-TYPE     89    160    132
D177V5, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              0              160
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF789 MUTATED        3      3      0
  ZNF789 WILD-TYPE    179    130     72
D177V6, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF789 MUTATED        1      2      2      2
  ZNF789 WILD-TYPE    111     94     90    184
D177V7, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF789 MUTATED        0      2      1      0      2      0      2
  ZNF789 WILD-TYPE     60     48     48     40     61    125     97
D177V8, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF789 MUTATED        2      1      1      2
  ZNF789 WILD-TYPE    128     77     67    194
D177V9, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF789 MUTATED        1      1      0      0      2      0      1      0
  ZNF789 WILD-TYPE     39     61     28     80     67     48     42     28
                  vv
clus               CLUS_9
  ZNF789 MUTATED        1
  ZNF789 WILD-TYPE     73
D177V10, multiclass
        clus
vv       ZNF789 MUTATED ZNF789 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF789 MUTATED        0      0      0      0
  ZNF789 WILD-TYPE     33     31     27     19
D177V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF789 MUTATED        0      0      0      0
  ZNF789 WILD-TYPE     54     10     24     22
D177V12, multiclass

Clustering(178) Variable = DDX43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        2      0      1      0
  DDX43 WILD-TYPE     44     58     63     43
D178V1, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        1      2      0
  DDX43 WILD-TYPE     50     81     77
D178V2, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        8      3      2      0
  DDX43 WILD-TYPE    170    180     99     20
D178V3, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        6      2      3
  DDX43 WILD-TYPE     81     78     97
D178V4, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        1      3      9
  DDX43 WILD-TYPE     88    157    129
D178V5, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        6      4      3
  DDX43 WILD-TYPE    176    129     69
D178V6, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        1      5      4      4
  DDX43 WILD-TYPE    111     91     88    182
D178V7, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX43 MUTATED        0      3      4      1      2      2      2
  DDX43 WILD-TYPE     60     47     45     39     61    123     97
D178V8, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        5      2      1      6
  DDX43 WILD-TYPE    125     76     67    190
D178V9, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX43 MUTATED        2      2      0      1      4      0      1      0
  DDX43 WILD-TYPE     38     60     28     79     65     48     42     28
                 vv
clus              CLUS_9
  DDX43 MUTATED        4
  DDX43 WILD-TYPE     70
D178V10, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        1      2      0      4
  DDX43 WILD-TYPE     32     29     27     15
D178V11, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        5      0      2      0
  DDX43 WILD-TYPE     49     10     22     22
D178V12, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(179) Variable = CEP135 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP135 MUTATED        6      0      0      2
  CEP135 WILD-TYPE     40     58     64     41
D179V1, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              6               40
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP135 MUTATED        5      1      2
  CEP135 WILD-TYPE     46     82     75
D179V2, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP135 MUTATED       15      6      3      1
  CEP135 WILD-TYPE    163    177     98     19
D179V3, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              6              177
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP135 MUTATED        4      6      7
  CEP135 WILD-TYPE     83     74     93
D179V4, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              6               74
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP135 MUTATED        4      9      9
  CEP135 WILD-TYPE     85    151    129
D179V5, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              9              151
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP135 MUTATED       11      8      3
  CEP135 WILD-TYPE    171    125     69
D179V6, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP135 MUTATED        7      3      7      8
  CEP135 WILD-TYPE    105     93     85    178
D179V7, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              7              105
  CLUS_2              3               93
  CLUS_3              7               85
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEP135 MUTATED        5      1      6      1      5      2      5
  CEP135 WILD-TYPE     55     49     43     39     58    123     94
D179V8, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              5               58
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP135 MUTATED        6      4      5      8
  CEP135 WILD-TYPE    124     74     63    188
D179V9, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              4               74
  CLUS_3              5               63
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEP135 MUTATED        1      3      1      1      7      3      6      0
  CEP135 WILD-TYPE     39     59     27     79     62     45     37     28
                  vv
clus               CLUS_9
  CEP135 MUTATED        1
  CEP135 WILD-TYPE     73
D179V10, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              3               45
  CLUS_7              6               37
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP135 MUTATED        4      0      1      3
  CEP135 WILD-TYPE     29     31     26     16
D179V11, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP135 MUTATED        5      0      0      3
  CEP135 WILD-TYPE     49     10     24     19
D179V12, multiclass
        clus
vv       CEP135 MUTATED CEP135 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(180) Variable = IL12RB2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL12RB2 MUTATED        2      0      0      4
  IL12RB2 WILD-TYPE     44     58     64     39
D180V1, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL12RB2 MUTATED        2      2      2
  IL12RB2 WILD-TYPE     49     81     75
D180V2, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL12RB2 MUTATED       15      2      1      1
  IL12RB2 WILD-TYPE    163    181    100     19
D180V3, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL12RB2 MUTATED        6      2      5
  IL12RB2 WILD-TYPE     81     78     95
D180V4, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               2                78
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL12RB2 MUTATED        0      6      9
  IL12RB2 WILD-TYPE     89    154    129
D180V5, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               6               154
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL12RB2 MUTATED        9      5      1
  IL12RB2 WILD-TYPE    173    128     71
D180V6, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL12RB2 MUTATED        2      6      6      5
  IL12RB2 WILD-TYPE    110     90     86    181
D180V7, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               6                90
  CLUS_3               6                86
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL12RB2 MUTATED        3      0      6      3      1      1      5
  IL12RB2 WILD-TYPE     57     50     43     37     62    124     94
D180V8, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               0                50
  CLUS_3               6                43
  CLUS_4               3                37
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL12RB2 MUTATED        7      2      2      7
  IL12RB2 WILD-TYPE    123     76     66    189
D180V9, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL12RB2 MUTATED        3      4      2      2      5      0      2      0
  IL12RB2 WILD-TYPE     37     58     26     78     64     48     41     28
                   vv
clus                CLUS_9
  IL12RB2 MUTATED        0
  IL12RB2 WILD-TYPE     74
D180V10, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               4                58
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL12RB2 MUTATED        0      0      1      5
  IL12RB2 WILD-TYPE     33     31     26     14
D180V11, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL12RB2 MUTATED        3      0      2      1
  IL12RB2 WILD-TYPE     51     10     22     21
D180V12, multiclass
        clus
vv       IL12RB2 MUTATED IL12RB2 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(181) Variable = EHBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        3      1      0      2
  EHBP1 WILD-TYPE     43     57     64     41
D181V1, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        3      2      1
  EHBP1 WILD-TYPE     48     81     76
D181V2, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED       13      9      3      0
  EHBP1 WILD-TYPE    165    174     98     20
D181V3, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             9             174
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        3      6     10
  EHBP1 WILD-TYPE     84     74     90
D181V4, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             6              74
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        5      8      8
  EHBP1 WILD-TYPE     84    152    130
D181V5, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED       12      7      2
  EHBP1 WILD-TYPE    170    126     70
D181V6, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1            12             170
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        7      6      6      6
  EHBP1 WILD-TYPE    105     90     86    180
D181V7, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             7             105
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EHBP1 MUTATED        6      5      6      1      2      2      3
  EHBP1 WILD-TYPE     54     45     43     39     61    123     96
D181V8, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             5              45
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED       13      3      2      7
  EHBP1 WILD-TYPE    117     75     66    189
D181V9, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1            13             117
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EHBP1 MUTATED        2      3      1      6      9      1      2      0
  EHBP1 WILD-TYPE     38     59     27     74     60     47     41     28
                 vv
clus              CLUS_9
  EHBP1 MUTATED        1
  EHBP1 WILD-TYPE     73
D181V10, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             6              74
  CLUS_5             9              60
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        2      1      0      2
  EHBP1 WILD-TYPE     31     30     27     17
D181V11, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        3      0      1      1
  EHBP1 WILD-TYPE     51     10     23     21
D181V12, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(182) Variable = USP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP7 MUTATED        2      0      0      4
  USP7 WILD-TYPE     44     58     64     39
D182V1, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP7 MUTATED        3      2      1
  USP7 WILD-TYPE     48     81     76
D182V2, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP7 MUTATED       21      2      3      0
  USP7 WILD-TYPE    157    181     98     20
D182V3, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1           21            157
  CLUS_2            2            181
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP7 MUTATED        8      2      8
  USP7 WILD-TYPE     79     78     92
D182V4, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            2             78
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP7 MUTATED        2      9     11
  USP7 WILD-TYPE     87    151    127
D182V5, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            9            151
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP7 MUTATED       10     11      1
  USP7 WILD-TYPE    172    122     71
D182V6, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1           10            172
  CLUS_2           11            122
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP7 MUTATED        2     10      6      8
  USP7 WILD-TYPE    110     86     86    178
D182V7, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            2            110
  CLUS_2           10             86
  CLUS_3            6             86
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP7 MUTATED        2      5      9      2      1      1      6
  USP7 WILD-TYPE     58     45     40     38     62    124     93
D182V8, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            5             45
  CLUS_3            9             40
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP7 MUTATED       11      2      2     10
  USP7 WILD-TYPE    119     76     66    186
D182V9, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  USP7 MUTATED        2      4      4      1      8      0      3      1      2
  USP7 WILD-TYPE     38     58     24     79     61     48     40     27     72
D182V10, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            4             24
  CLUS_4            1             79
  CLUS_5            8             61
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP7 MUTATED        0      0      1      3
  USP7 WILD-TYPE     33     31     26     16
D182V11, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP7 MUTATED        1      0      3      0
  USP7 WILD-TYPE     53     10     21     22
D182V12, multiclass
        clus
vv       USP7 MUTATED USP7 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(183) Variable = IVL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVL MUTATED        1      1      1      0
  IVL WILD-TYPE     45     57     63     43
D183V1, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           1            45
  CLUS_2           1            57
  CLUS_3           1            63
  CLUS_4           0            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVL MUTATED        1      1      1
  IVL WILD-TYPE     50     82     76
D183V2, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           1            50
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVL MUTATED        8      9      1      2
  IVL WILD-TYPE    170    174    100     18
D183V3, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           8           170
  CLUS_2           9           174
  CLUS_3           1           100
  CLUS_4           2            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVL MUTATED        3      6      8
  IVL WILD-TYPE     84     74     92
D183V4, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           3            84
  CLUS_2           6            74
  CLUS_3           8            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVL MUTATED        4      5      6
  IVL WILD-TYPE     85    155    132
D183V5, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           4            85
  CLUS_2           5           155
  CLUS_3           6           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVL MUTATED        9      5      1
  IVL WILD-TYPE    173    128     71
D183V6, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           9           173
  CLUS_2           5           128
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVL MUTATED        9      2      6      3
  IVL WILD-TYPE    103     94     86    183
D183V7, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           9           103
  CLUS_2           2            94
  CLUS_3           6            86
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IVL MUTATED        3      1      3      3      6      2      2
  IVL WILD-TYPE     57     49     46     37     57    123     97
D183V8, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           3            57
  CLUS_2           1            49
  CLUS_3           3            46
  CLUS_4           3            37
  CLUS_5           6            57
  CLUS_6           2           123
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVL MUTATED        7      6      3      4
  IVL WILD-TYPE    123     72     65    192
D183V9, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           7           123
  CLUS_2           6            72
  CLUS_3           3            65
  CLUS_4           4           192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IVL MUTATED        2      5      2      2      3      2      2      0      2
  IVL WILD-TYPE     38     57     26     78     66     46     41     28     72
D183V10, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           2            38
  CLUS_2           5            57
  CLUS_3           2            26
  CLUS_4           2            78
  CLUS_5           3            66
  CLUS_6           2            46
  CLUS_7           2            41
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVL MUTATED        2      2      0      1
  IVL WILD-TYPE     31     29     27     18
D183V11, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           2            31
  CLUS_2           2            29
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVL MUTATED        3      2      0      0
  IVL WILD-TYPE     51      8     24     22
D183V12, multiclass
        clus
vv       IVL MUTATED IVL WILD-TYPE
  CLUS_1           3            51
  CLUS_2           2             8
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(184) Variable = IDH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        3      1      0      2
  IDH2 WILD-TYPE     43     57     64     41
D184V1, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        5      1      0
  IDH2 WILD-TYPE     46     82     77
D184V2, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        9      4      4      1
  IDH2 WILD-TYPE    169    179     97     19
D184V3, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            4            179
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        3      2      5
  IDH2 WILD-TYPE     84     78     95
D184V4, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        4      4      6
  IDH2 WILD-TYPE     85    156    132
D184V5, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            4            156
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        6      5      3
  IDH2 WILD-TYPE    176    128     69
D184V6, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        4      6      3      5
  IDH2 WILD-TYPE    108     90     89    181
D184V7, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDH2 MUTATED        2      3      4      0      2      1      6
  IDH2 WILD-TYPE     58     47     45     40     61    124     93
D184V8, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        9      0      2      7
  IDH2 WILD-TYPE    121     78     66    189
D184V9, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            0             78
  CLUS_3            2             66
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IDH2 MUTATED        3      1      0      4      6      0      1      2      1
  IDH2 WILD-TYPE     37     61     28     76     63     48     42     26     73
D184V10, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            4             76
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      0      0      1
  IDH2 WILD-TYPE     32     31     27     18
D184V11, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      0      1      0
  IDH2 WILD-TYPE     53     10     23     22
D184V12, multiclass
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 

Clustering(185) Variable = FGFR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR2 MUTATED        1      0      0      2
  FGFR2 WILD-TYPE     45     58     64     41
D185V1, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR2 MUTATED        1      0      2
  FGFR2 WILD-TYPE     50     83     75
D185V2, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR2 MUTATED       26     15      8      4
  FGFR2 WILD-TYPE    152    168     93     16
D185V3, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            26             152
  CLUS_2            15             168
  CLUS_3             8              93
  CLUS_4             4              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR2 MUTATED       21     11     18
  FGFR2 WILD-TYPE     66     69     82
D185V4, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            21              66
  CLUS_2            11              69
  CLUS_3            18              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR2 MUTATED       10     14     22
  FGFR2 WILD-TYPE     79    146    116
D185V5, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            10              79
  CLUS_2            14             146
  CLUS_3            22             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR2 MUTATED       27     14      5
  FGFR2 WILD-TYPE    155    119     67
D185V6, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            27             155
  CLUS_2            14             119
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR2 MUTATED       12     19     17      5
  FGFR2 WILD-TYPE    100     77     75    181
D185V7, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            12             100
  CLUS_2            19              77
  CLUS_3            17              75
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGFR2 MUTATED       11      9     11      9      9      1      3
  FGFR2 WILD-TYPE     49     41     38     31     54    124     96
D185V8, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            11              49
  CLUS_2             9              41
  CLUS_3            11              38
  CLUS_4             9              31
  CLUS_5             9              54
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR2 MUTATED       31      9      7      6
  FGFR2 WILD-TYPE     99     69     61    190
D185V9, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            31              99
  CLUS_2             9              69
  CLUS_3             7              61
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FGFR2 MUTATED       11      6      4      9     10      3      9      0
  FGFR2 WILD-TYPE     29     56     24     71     59     45     34     28
                 vv
clus              CLUS_9
  FGFR2 MUTATED        1
  FGFR2 WILD-TYPE     73
D185V10, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            11              29
  CLUS_2             6              56
  CLUS_3             4              24
  CLUS_4             9              71
  CLUS_5            10              59
  CLUS_6             3              45
  CLUS_7             9              34
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR2 MUTATED        5      4      3      6
  FGFR2 WILD-TYPE     28     27     24     13
D185V11, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             4              27
  CLUS_3             3              24
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR2 MUTATED       11      0      5      2
  FGFR2 WILD-TYPE     43     10     19     20
D185V12, multiclass
        clus
vv       FGFR2 MUTATED FGFR2 WILD-TYPE
  CLUS_1            11              43
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(186) Variable = FAM134A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM134A MUTATED        1      0      1      1
  FAM134A WILD-TYPE     45     58     63     42
D186V1, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM134A MUTATED        2      0      1
  FAM134A WILD-TYPE     49     83     76
D186V2, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM134A MUTATED        6      2      0      0
  FAM134A WILD-TYPE    172    181    101     20
D186V3, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM134A MUTATED        1      1      3
  FAM134A WILD-TYPE     86     79     97
D186V4, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM134A MUTATED        0      5      2
  FAM134A WILD-TYPE     89    155    136
D186V5, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM134A MUTATED        3      4      0
  FAM134A WILD-TYPE    179    129     72
D186V6, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               3               179
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM134A MUTATED        1      4      0      3
  FAM134A WILD-TYPE    111     92     92    183
D186V7, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               0                92
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM134A MUTATED        0      2      2      1      0      1      2
  FAM134A WILD-TYPE     60     48     47     39     63    124     97
D186V8, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM134A MUTATED        4      0      1      2
  FAM134A WILD-TYPE    126     78     67    194
D186V9, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM134A MUTATED        1      1      0      0      1      1      2      1
  FAM134A WILD-TYPE     39     61     28     80     68     47     41     27
                   vv
clus                CLUS_9
  FAM134A MUTATED        0
  FAM134A WILD-TYPE     74
D186V10, multiclass
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM134A MUTATED        1      0      0      1
  FAM134A WILD-TYPE     32     31     27     18
D186V11, multiclass
[1] "Remove cluster labels:" "FAM134A MUTATED"       
clus
  FAM134A MUTATED FAM134A WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM134A MUTATED        0      0      1      1
  FAM134A WILD-TYPE     54     10     23     21
D186V12, multiclass
[1] "Remove cluster labels:" "FAM134A MUTATED"       
clus
  FAM134A MUTATED FAM134A WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 

Clustering(187) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        6      0      1      3
  MLL2 WILD-TYPE     40     58     63     40
D187V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        7      1      2
  MLL2 WILD-TYPE     44     82     75
D187V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       38     12      6      2
  MLL2 WILD-TYPE    140    171     95     18
D187V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           38            140
  CLUS_2           12            171
  CLUS_3            6             95
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       18      8     22
  MLL2 WILD-TYPE     69     72     78
D187V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           18             69
  CLUS_2            8             72
  CLUS_3           22             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        5     18     31
  MLL2 WILD-TYPE     84    142    107
D187V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           18            142
  CLUS_3           31            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       30     19      5
  MLL2 WILD-TYPE    152    114     67
D187V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           30            152
  CLUS_2           19            114
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       12     20     16     11
  MLL2 WILD-TYPE    100     76     76    175
D187V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           12            100
  CLUS_2           20             76
  CLUS_3           16             76
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL2 MUTATED        6      5     21      7      6      2     12
  MLL2 WILD-TYPE     54     45     28     33     57    123     87
D187V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            5             45
  CLUS_3           21             28
  CLUS_4            7             33
  CLUS_5            6             57
  CLUS_6            2            123
  CLUS_7           12             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       25     12      3     18
  MLL2 WILD-TYPE    105     66     65    178
D187V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           25            105
  CLUS_2           12             66
  CLUS_3            3             65
  CLUS_4           18            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MLL2 MUTATED        6     10      1      6     16      4      9      4      2
  MLL2 WILD-TYPE     34     52     27     74     53     44     34     24     72
D187V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            6             34
  CLUS_2           10             52
  CLUS_3            1             27
  CLUS_4            6             74
  CLUS_5           16             53
  CLUS_6            4             44
  CLUS_7            9             34
  CLUS_8            4             24
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        3      3      2     10
  MLL2 WILD-TYPE     30     28     25      9
D187V11, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4           10              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       12      0      4      2
  MLL2 WILD-TYPE     42     10     20     20
D187V12, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           12             42
  CLUS_2            0             10
  CLUS_3            4             20
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(188) Variable = LRRC39 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC39 MUTATED        2      0      0      0
  LRRC39 WILD-TYPE     44     58     64     43
D188V1, multiclass
[1] "Remove cluster labels:" "LRRC39 MUTATED"        
clus
  LRRC39 MUTATED LRRC39 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AY-4071 
"LRRC39 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC39 MUTATED        2      0      0
  LRRC39 WILD-TYPE     49     83     77
D188V2, multiclass
[1] "Remove cluster labels:" "LRRC39 MUTATED"        
clus
  LRRC39 MUTATED LRRC39 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AY-4071 
"LRRC39 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC39 MUTATED        6      2      0      1
  LRRC39 WILD-TYPE    172    181    101     19
D188V3, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC39 MUTATED        4      1      2
  LRRC39 WILD-TYPE     83     79     98
D188V4, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC39 MUTATED        1      1      6
  LRRC39 WILD-TYPE     88    159    132
D188V5, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC39 MUTATED        6      0      2
  LRRC39 WILD-TYPE    176    133     70
D188V6, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              0              133
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC39 MUTATED        1      1      5      2
  LRRC39 WILD-TYPE    111     95     87    184
D188V7, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              5               87
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRC39 MUTATED        0      0      4      1      2      0      2
  LRRC39 WILD-TYPE     60     50     45     39     61    125     97
D188V8, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC39 MUTATED        4      2      1      2
  LRRC39 WILD-TYPE    126     76     67    194
D188V9, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRC39 MUTATED        0      3      0      0      4      0      2      0
  LRRC39 WILD-TYPE     40     59     28     80     65     48     41     28
                  vv
clus               CLUS_9
  LRRC39 MUTATED        0
  LRRC39 WILD-TYPE     74
D188V10, multiclass
        clus
vv       LRRC39 MUTATED LRRC39 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC39 MUTATED        1      0      0      1
  LRRC39 WILD-TYPE     32     31     27     18
D188V11, multiclass
[1] "Remove cluster labels:" "LRRC39 MUTATED"        
clus
  LRRC39 MUTATED LRRC39 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6672       TCGA-AG-3731 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235       TCGA-G5-6641 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC39 MUTATED        1      0      0      1
  LRRC39 WILD-TYPE     53     10     24     21
D188V12, multiclass
[1] "Remove cluster labels:" "LRRC39 MUTATED"        
clus
  LRRC39 MUTATED LRRC39 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6672       TCGA-AG-3731 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235       TCGA-G5-6641 
"LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" "LRRC39 WILD-TYPE" 

Clustering(189) Variable = ST8SIA6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST8SIA6 MUTATED        1      0      0      2
  ST8SIA6 WILD-TYPE     45     58     64     41
D189V1, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST8SIA6 MUTATED        1      1      1
  ST8SIA6 WILD-TYPE     50     82     76
D189V2, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST8SIA6 MUTATED       11      3      0      0
  ST8SIA6 WILD-TYPE    167    180    101     20
D189V3, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST8SIA6 MUTATED        3      2      6
  ST8SIA6 WILD-TYPE     84     78     94
D189V4, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST8SIA6 MUTATED        1      6      4
  ST8SIA6 WILD-TYPE     88    154    134
D189V5, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ST8SIA6 MUTATED        3      6      2
  ST8SIA6 WILD-TYPE    179    127     70
D189V6, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               6               127
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST8SIA6 MUTATED        2      5      4      3
  ST8SIA6 WILD-TYPE    110     91     88    183
D189V7, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ST8SIA6 MUTATED        3      2      5      1      1      0      2
  ST8SIA6 WILD-TYPE     57     48     44     39     62    125     97
D189V8, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST8SIA6 MUTATED        3      3      2      5
  ST8SIA6 WILD-TYPE    127     75     66    191
D189V9, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               3                75
  CLUS_3               2                66
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ST8SIA6 MUTATED        1      2      1      1      4      1      2      0
  ST8SIA6 WILD-TYPE     39     60     27     79     65     47     41     28
                   vv
clus                CLUS_9
  ST8SIA6 MUTATED        1
  ST8SIA6 WILD-TYPE     73
D189V10, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST8SIA6 MUTATED        2      0      1      0
  ST8SIA6 WILD-TYPE     31     31     26     19
D189V11, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST8SIA6 MUTATED        1      0      0      2
  ST8SIA6 WILD-TYPE     53     10     24     20
D189V12, multiclass
        clus
vv       ST8SIA6 MUTATED ST8SIA6 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(190) Variable = CAB39L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        0      0      0      2
  CAB39L WILD-TYPE     46     58     64     41
D190V1, multiclass
[1] "Remove cluster labels:" "CAB39L MUTATED"        
clus
  CAB39L MUTATED CAB39L WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AY-4071 
"CAB39L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        0      1      1
  CAB39L WILD-TYPE     51     82     76
D190V2, multiclass
[1] "Remove cluster labels:" "CAB39L MUTATED"        
clus
  CAB39L MUTATED CAB39L WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" "CAB39L WILD-TYPE" 
      TCGA-AY-4071 
"CAB39L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED       10      0      0      0
  CAB39L WILD-TYPE    168    183    101     20
D190V3, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1             10              168
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        1      0      7
  CAB39L WILD-TYPE     86     80     93
D190V4, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        0      3      7
  CAB39L WILD-TYPE     89    157    131
D190V5, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        7      3      0
  CAB39L WILD-TYPE    175    130     72
D190V6, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        0      6      2      2
  CAB39L WILD-TYPE    112     90     90    184
D190V7, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CAB39L MUTATED        1      1      7      0      0      0      1
  CAB39L WILD-TYPE     59     49     42     40     63    125     98
D190V8, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        5      0      0      5
  CAB39L WILD-TYPE    125     78     68    191
D190V9, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              5              125
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CAB39L MUTATED        1      3      1      1      4      0      0      0
  CAB39L WILD-TYPE     39     59     27     79     65     48     43     28
                  vv
clus               CLUS_9
  CAB39L MUTATED        0
  CAB39L WILD-TYPE     74
D190V10, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        0      0      0      3
  CAB39L WILD-TYPE     33     31     27     16
D190V11, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        2      0      1      0
  CAB39L WILD-TYPE     52     10     23     22
D190V12, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(191) Variable = ERBB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED        7      1      5      7
  ERBB4 WILD-TYPE     39     57     59     36
D191V1, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             1              57
  CLUS_3             5              59
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED        8      5      7
  ERBB4 WILD-TYPE     43     78     70
D191V2, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             5              78
  CLUS_3             7              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       30     15     12      0
  ERBB4 WILD-TYPE    148    168     89     20
D191V3, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            30             148
  CLUS_2            15             168
  CLUS_3            12              89
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       15      9     15
  ERBB4 WILD-TYPE     72     71     85
D191V4, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            15              72
  CLUS_2             9              71
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       10     20     19
  ERBB4 WILD-TYPE     79    140    119
D191V5, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            10              79
  CLUS_2            20             140
  CLUS_3            19             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       28     13      8
  ERBB4 WILD-TYPE    154    120     64
D191V6, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            28             154
  CLUS_2            13             120
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       10     15     16     18
  ERBB4 WILD-TYPE    102     81     76    168
D191V7, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            10             102
  CLUS_2            15              81
  CLUS_3            16              76
  CLUS_4            18             168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERBB4 MUTATED       10      3     11      6      8      7     14
  ERBB4 WILD-TYPE     50     47     38     34     55    118     85
D191V8, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            10              50
  CLUS_2             3              47
  CLUS_3            11              38
  CLUS_4             6              34
  CLUS_5             8              55
  CLUS_6             7             118
  CLUS_7            14              85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       16     15      6     20
  ERBB4 WILD-TYPE    114     63     62    176
D191V9, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            16             114
  CLUS_2            15              63
  CLUS_3             6              62
  CLUS_4            20             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERBB4 MUTATED        5     13      6      6     11      1      5      5
  ERBB4 WILD-TYPE     35     49     22     74     58     47     38     23
                 vv
clus              CLUS_9
  ERBB4 MUTATED        5
  ERBB4 WILD-TYPE     69
D191V10, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             5              35
  CLUS_2            13              49
  CLUS_3             6              22
  CLUS_4             6              74
  CLUS_5            11              58
  CLUS_6             1              47
  CLUS_7             5              38
  CLUS_8             5              23
  CLUS_9             5              69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED        2      3      4      2
  ERBB4 WILD-TYPE     31     28     23     17
D191V11, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             4              23
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED        5      2      4      0
  ERBB4 WILD-TYPE     49      8     20     22
D191V12, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             2               8
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(192) Variable = UGT3A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT3A2 MUTATED        1      0      1      4
  UGT3A2 WILD-TYPE     45     58     63     39
D192V1, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT3A2 MUTATED        2      2      2
  UGT3A2 WILD-TYPE     49     81     75
D192V2, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT3A2 MUTATED       17      2      3      0
  UGT3A2 WILD-TYPE    161    181     98     20
D192V3, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT3A2 MUTATED        8      2      6
  UGT3A2 WILD-TYPE     79     78     94
D192V4, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT3A2 MUTATED        3      5     11
  UGT3A2 WILD-TYPE     86    155    127
D192V5, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT3A2 MUTATED       12      4      3
  UGT3A2 WILD-TYPE    170    129     69
D192V6, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              4              129
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT3A2 MUTATED        2      7      6      7
  UGT3A2 WILD-TYPE    110     89     86    179
D192V7, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              6               86
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UGT3A2 MUTATED        4      0      8      2      2      2      4
  UGT3A2 WILD-TYPE     56     50     41     38     61    123     95
D192V8, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT3A2 MUTATED        9      4      0      9
  UGT3A2 WILD-TYPE    121     74     68    187
D192V9, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UGT3A2 MUTATED        2      6      1      1      7      1      1      0
  UGT3A2 WILD-TYPE     38     56     27     79     62     47     42     28
                  vv
clus               CLUS_9
  UGT3A2 MUTATED        3
  UGT3A2 WILD-TYPE     71
D192V10, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT3A2 MUTATED        1      0      0      5
  UGT3A2 WILD-TYPE     32     31     27     14
D192V11, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT3A2 MUTATED        5      0      0      1
  UGT3A2 WILD-TYPE     49     10     24     21
D192V12, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(193) Variable = ARHGAP5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        1      1      0      5
  ARHGAP5 WILD-TYPE     45     57     64     38
D193V1, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED        3      2      2
  ARHGAP5 WILD-TYPE     48     81     75
D193V2, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED       18      4      1      0
  ARHGAP5 WILD-TYPE    160    179    100     20
D193V3, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1              18               160
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED        5      1      9
  ARHGAP5 WILD-TYPE     82     79     91
D193V4, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               1                79
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED        2      8      9
  ARHGAP5 WILD-TYPE     87    152    129
D193V5, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               8               152
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED       11      6      2
  ARHGAP5 WILD-TYPE    171    127     70
D193V6, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               6               127
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        3      4      8      8
  ARHGAP5 WILD-TYPE    109     92     84    178
D193V7, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               4                92
  CLUS_3               8                84
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP5 MUTATED        3      1      9      0      2      1      7
  ARHGAP5 WILD-TYPE     57     49     40     40     61    124     92
D193V8, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               9                40
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               7                92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        7      5      3      8
  ARHGAP5 WILD-TYPE    123     73     65    188
D193V9, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               5                73
  CLUS_3               3                65
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP5 MUTATED        1      4      1      0     11      0      3      1
  ARHGAP5 WILD-TYPE     39     58     27     80     58     48     40     27
                   vv
clus                CLUS_9
  ARHGAP5 MUTATED        2
  ARHGAP5 WILD-TYPE     72
D193V10, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5              11                58
  CLUS_6               0                48
  CLUS_7               3                40
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        2      0      1      4
  ARHGAP5 WILD-TYPE     31     31     26     15
D193V11, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        5      0      2      0
  ARHGAP5 WILD-TYPE     49     10     22     22
D193V12, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(194) Variable = EP400 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        5      0      2      6
  EP400 WILD-TYPE     41     58     62     37
D194V1, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED        8      2      3
  EP400 WILD-TYPE     43     81     74
D194V2, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED       24     10      5      1
  EP400 WILD-TYPE    154    173     96     19
D194V3, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1            24             154
  CLUS_2            10             173
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED        5      7     14
  EP400 WILD-TYPE     82     73     86
D194V4, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             7              73
  CLUS_3            14              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED        8     12     12
  EP400 WILD-TYPE     81    148    126
D194V5, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             8              81
  CLUS_2            12             148
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED       14     10      8
  EP400 WILD-TYPE    168    123     64
D194V6, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1            14             168
  CLUS_2            10             123
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        5     12      8     15
  EP400 WILD-TYPE    107     84     84    171
D194V7, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             5             107
  CLUS_2            12              84
  CLUS_3             8              84
  CLUS_4            15             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EP400 MUTATED        3      2     11      3      5      4     12
  EP400 WILD-TYPE     57     48     38     37     58    121     87
D194V8, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3            11              38
  CLUS_4             3              37
  CLUS_5             5              58
  CLUS_6             4             121
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED       12      5      4     16
  EP400 WILD-TYPE    118     73     64    180
D194V9, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             5              73
  CLUS_3             4              64
  CLUS_4            16             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EP400 MUTATED        4      5      2      3     15      0      3      2
  EP400 WILD-TYPE     36     57     26     77     54     48     40     26
                 vv
clus              CLUS_9
  EP400 MUTATED        3
  EP400 WILD-TYPE     71
D194V10, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5            15              54
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             2              26
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        2      2      1      1
  EP400 WILD-TYPE     31     29     26     18
D194V11, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        2      1      1      2
  EP400 WILD-TYPE     52      9     23     20
D194V12, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(195) Variable = MEN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        1      0      0      0
  MEN1 WILD-TYPE     45     58     64     43
D195V1, multiclass
[1] "Remove cluster labels:" "MEN1 MUTATED"          
clus
  MEN1 MUTATED MEN1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        1      0      0
  MEN1 WILD-TYPE     50     83     77
D195V2, multiclass
[1] "Remove cluster labels:" "MEN1 MUTATED"          
clus
  MEN1 MUTATED MEN1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MEN1 WILD-TYPE" "MEN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED       14      7      6      0
  MEN1 WILD-TYPE    164    176     95     20
D195V3, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            7            176
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        8      5     13
  MEN1 WILD-TYPE     79     75     87
D195V4, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            5             75
  CLUS_3           13             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        2      9     10
  MEN1 WILD-TYPE     87    151    128
D195V5, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            9            151
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED       10      8      3
  MEN1 WILD-TYPE    172    125     69
D195V6, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            8            125
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        6     14      6      1
  MEN1 WILD-TYPE    106     82     86    185
D195V7, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            6            106
  CLUS_2           14             82
  CLUS_3            6             86
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEN1 MUTATED        3      7      8      4      4      0      1
  MEN1 WILD-TYPE     57     43     41     36     59    125     98
D195V8, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            7             43
  CLUS_3            8             41
  CLUS_4            4             36
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED       15      6      3      3
  MEN1 WILD-TYPE    115     72     65    193
D195V9, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1           15            115
  CLUS_2            6             72
  CLUS_3            3             65
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MEN1 MUTATED        3      4      3      4      6      3      4      0      0
  MEN1 WILD-TYPE     37     58     25     76     63     45     39     28     74
D195V10, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            4             76
  CLUS_5            6             63
  CLUS_6            3             45
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        1      3      3      3
  MEN1 WILD-TYPE     32     28     24     16
D195V11, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             28
  CLUS_3            3             24
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        1      2      2      5
  MEN1 WILD-TYPE     53      8     22     17
D195V12, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            2              8
  CLUS_3            2             22
  CLUS_4            5             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(196) Variable = SENP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP6 MUTATED        0      0      0      2
  SENP6 WILD-TYPE     46     58     64     41
D196V1, multiclass
[1] "Remove cluster labels:" "SENP6 MUTATED"         
clus
  SENP6 MUTATED SENP6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AY-4071 
"SENP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP6 MUTATED        1      0      1
  SENP6 WILD-TYPE     50     83     76
D196V2, multiclass
[1] "Remove cluster labels:" "SENP6 MUTATED"         
clus
  SENP6 MUTATED SENP6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" "SENP6 WILD-TYPE" 
     TCGA-AY-4071 
"SENP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP6 MUTATED       12      4      2      0
  SENP6 WILD-TYPE    166    179     99     20
D196V3, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP6 MUTATED        5      2      9
  SENP6 WILD-TYPE     82     78     91
D196V4, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP6 MUTATED        1      7      8
  SENP6 WILD-TYPE     88    153    130
D196V5, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP6 MUTATED       10      5      1
  SENP6 WILD-TYPE    172    128     71
D196V6, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP6 MUTATED        3      7      6      2
  SENP6 WILD-TYPE    109     89     86    184
D196V7, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SENP6 MUTATED        3      1      9      0      4      0      1
  SENP6 WILD-TYPE     57     49     40     40     59    125     98
D196V8, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP6 MUTATED        9      3      2      3
  SENP6 WILD-TYPE    121     75     66    193
D196V9, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SENP6 MUTATED        2      5      1      2      6      0      1      0
  SENP6 WILD-TYPE     38     57     27     78     63     48     42     28
                 vv
clus              CLUS_9
  SENP6 MUTATED        0
  SENP6 WILD-TYPE     74
D196V10, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP6 MUTATED        1      0      1      1
  SENP6 WILD-TYPE     32     31     26     18
D196V11, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP6 MUTATED        1      0      1      1
  SENP6 WILD-TYPE     53     10     23     21
D196V12, multiclass
        clus
vv       SENP6 MUTATED SENP6 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(197) Variable = OR7C2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C2 MUTATED        1      0      0      1
  OR7C2 WILD-TYPE     45     58     64     42
D197V1, multiclass
[1] "Remove cluster labels:" "OR7C2 MUTATED"         
clus
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AY-4071 
"OR7C2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C2 MUTATED        1      1      0
  OR7C2 WILD-TYPE     50     82     77
D197V2, multiclass
[1] "Remove cluster labels:" "OR7C2 MUTATED"         
clus
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-AY-4071 
"OR7C2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C2 MUTATED        6      4      2      0
  OR7C2 WILD-TYPE    172    179     99     20
D197V3, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C2 MUTATED        4      3      3
  OR7C2 WILD-TYPE     83     77     97
D197V4, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C2 MUTATED        0      3      8
  OR7C2 WILD-TYPE     89    157    130
D197V5, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C2 MUTATED        8      2      1
  OR7C2 WILD-TYPE    174    131     71
D197V6, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C2 MUTATED        3      2      5      2
  OR7C2 WILD-TYPE    109     94     87    184
D197V7, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR7C2 MUTATED        3      1      3      0      3      0      2
  OR7C2 WILD-TYPE     57     49     46     40     60    125     97
D197V8, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C2 MUTATED        3      5      1      3
  OR7C2 WILD-TYPE    127     73     67    193
D197V9, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR7C2 MUTATED        1      5      2      1      2      0      1      0
  OR7C2 WILD-TYPE     39     57     26     79     67     48     42     28
                 vv
clus              CLUS_9
  OR7C2 MUTATED        0
  OR7C2 WILD-TYPE     74
D197V10, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C2 MUTATED        1      0      1      1
  OR7C2 WILD-TYPE     32     31     26     18
D197V11, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C2 MUTATED        2      0      0      1
  OR7C2 WILD-TYPE     52     10     24     21
D197V12, multiclass
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(198) Variable = PDGFRA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        3      2      0      5
  PDGFRA WILD-TYPE     43     56     64     38
D198V1, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              3               43
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        4      3      3
  PDGFRA WILD-TYPE     47     80     74
D198V2, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               80
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED       28     14     10      2
  PDGFRA WILD-TYPE    150    169     91     18
D198V3, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1             28              150
  CLUS_2             14              169
  CLUS_3             10               91
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED       13     12     18
  PDGFRA WILD-TYPE     74     68     82
D198V4, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1             13               74
  CLUS_2             12               68
  CLUS_3             18               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED        7     21     17
  PDGFRA WILD-TYPE     82    139    121
D198V5, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              7               82
  CLUS_2             21              139
  CLUS_3             17              121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PDGFRA MUTATED       20     17      8
  PDGFRA WILD-TYPE    162    116     64
D198V6, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1             20              162
  CLUS_2             17              116
  CLUS_3              8               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED       15     16     11     12
  PDGFRA WILD-TYPE     97     80     81    174
D198V7, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1             15               97
  CLUS_2             16               80
  CLUS_3             11               81
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDGFRA MUTATED        8      9     11      3     12      2      9
  PDGFRA WILD-TYPE     52     41     38     37     51    123     90
D198V8, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              8               52
  CLUS_2              9               41
  CLUS_3             11               38
  CLUS_4              3               37
  CLUS_5             12               51
  CLUS_6              2              123
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED       24     11      6     12
  PDGFRA WILD-TYPE    106     67     62    184
D198V9, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1             24              106
  CLUS_2             11               67
  CLUS_3              6               62
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PDGFRA MUTATED        9      9      6      5      8      5      7      1
  PDGFRA WILD-TYPE     31     53     22     75     61     43     36     27
                  vv
clus               CLUS_9
  PDGFRA MUTATED        3
  PDGFRA WILD-TYPE     71
D198V10, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              9               31
  CLUS_2              9               53
  CLUS_3              6               22
  CLUS_4              5               75
  CLUS_5              8               61
  CLUS_6              5               43
  CLUS_7              7               36
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        4      5      2      2
  PDGFRA WILD-TYPE     29     26     25     17
D198V11, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              4               29
  CLUS_2              5               26
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFRA MUTATED        4      2      2      5
  PDGFRA WILD-TYPE     50      8     22     17
D198V12, multiclass
        clus
vv       PDGFRA MUTATED PDGFRA WILD-TYPE
  CLUS_1              4               50
  CLUS_2              2                8
  CLUS_3              2               22
  CLUS_4              5               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(199) Variable = KLC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC4 MUTATED        3      0      1      2
  KLC4 WILD-TYPE     43     58     63     41
D199V1, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC4 MUTATED        4      1      1
  KLC4 WILD-TYPE     47     82     76
D199V2, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC4 MUTATED        9      5      1      2
  KLC4 WILD-TYPE    169    178    100     18
D199V3, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC4 MUTATED        3      2      5
  KLC4 WILD-TYPE     84     78     95
D199V4, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC4 MUTATED        3      5      5
  KLC4 WILD-TYPE     86    155    133
D199V5, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            155
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC4 MUTATED        5      3      5
  KLC4 WILD-TYPE    177    130     67
D199V6, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC4 MUTATED        3      5      2      6
  KLC4 WILD-TYPE    109     91     90    180
D199V7, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLC4 MUTATED        3      1      3      1      1      2      5
  KLC4 WILD-TYPE     57     49     46     39     62    123     94
D199V8, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC4 MUTATED        5      4      0      8
  KLC4 WILD-TYPE    125     74     68    188
D199V9, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KLC4 MUTATED        1      2      1      0      6      5      1      0      1
  KLC4 WILD-TYPE     39     60     27     80     63     43     42     28     73
D199V10, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            6             63
  CLUS_6            5             43
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC4 MUTATED        1      1      0      1
  KLC4 WILD-TYPE     32     30     27     18
D199V11, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC4 MUTATED        2      0      0      1
  KLC4 WILD-TYPE     52     10     24     21
D199V12, multiclass
        clus
vv       KLC4 MUTATED KLC4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(200) Variable = INTS4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        2      0      0      2
  INTS4 WILD-TYPE     44     58     64     41
D200V1, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        2      1      1
  INTS4 WILD-TYPE     49     82     76
D200V2, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED       12      4      4      1
  INTS4 WILD-TYPE    166    179     97     19
D200V3, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        6      6      6
  INTS4 WILD-TYPE     81     74     94
D200V4, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             6              74
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        2      6      9
  INTS4 WILD-TYPE     87    154    129
D200V5, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS4 MUTATED        8      9      0
  INTS4 WILD-TYPE    174    124     72
D200V6, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             9             124
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        8      7      4      3
  INTS4 WILD-TYPE    104     89     88    183
D200V7, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INTS4 MUTATED        7      3      6      1      2      1      2
  INTS4 WILD-TYPE     53     47     43     39     61    124     97
D200V8, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        9      6      2      5
  INTS4 WILD-TYPE    121     72     66    191
D200V9, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             6              72
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INTS4 MUTATED        1      6      0      3      5      2      2      1
  INTS4 WILD-TYPE     39     56     28     77     64     46     41     27
                 vv
clus              CLUS_9
  INTS4 MUTATED        2
  INTS4 WILD-TYPE     72
D200V10, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        0      2      3      3
  INTS4 WILD-TYPE     33     29     24     16
D200V11, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             3              24
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS4 MUTATED        3      1      3      1
  INTS4 WILD-TYPE     51      9     21     21
D200V12, multiclass
        clus
vv       INTS4 MUTATED INTS4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(201) Variable = RBAK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBAK MUTATED        0      0      0      3
  RBAK WILD-TYPE     46     58     64     40
D201V1, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBAK MUTATED        1      1      1
  RBAK WILD-TYPE     50     82     76
D201V2, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBAK MUTATED       12      4      2      0
  RBAK WILD-TYPE    166    179     99     20
D201V3, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1           12            166
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBAK MUTATED        6      3      6
  RBAK WILD-TYPE     81     77     94
D201V4, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            6             81
  CLUS_2            3             77
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBAK MUTATED        1      5      9
  RBAK WILD-TYPE     88    155    129
D201V5, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBAK MUTATED       11      4      0
  RBAK WILD-TYPE    171    129     72
D201V6, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1           11            171
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBAK MUTATED        3      8      5      2
  RBAK WILD-TYPE    109     88     87    184
D201V7, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            3            109
  CLUS_2            8             88
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBAK MUTATED        1      5      3      0      5      0      4
  RBAK WILD-TYPE     59     45     46     40     58    125     95
D201V8, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            1             59
  CLUS_2            5             45
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            5             58
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBAK MUTATED       10      3      0      5
  RBAK WILD-TYPE    120     75     68    191
D201V9, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1           10            120
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBAK MUTATED        1      4      4      2      4      1      0      0      2
  RBAK WILD-TYPE     39     58     24     78     65     47     43     28     72
D201V10, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBAK MUTATED        0      3      0      2
  RBAK WILD-TYPE     33     28     27     17
D201V11, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            0             33
  CLUS_2            3             28
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBAK MUTATED        3      0      1      1
  RBAK WILD-TYPE     51     10     23     21
D201V12, multiclass
        clus
vv       RBAK MUTATED RBAK WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(202) Variable = EIF4A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4A2 MUTATED        0      2      2      0
  EIF4A2 WILD-TYPE     46     56     62     43
D202V1, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              2               56
  CLUS_3              2               62
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4A2 MUTATED        0      3      1
  EIF4A2 WILD-TYPE     51     80     76
D202V2, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4A2 MUTATED        6      4      1      1
  EIF4A2 WILD-TYPE    172    179    100     19
D202V3, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4A2 MUTATED        4      0      4
  EIF4A2 WILD-TYPE     83     80     96
D202V4, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4A2 MUTATED        0      6      5
  EIF4A2 WILD-TYPE     89    154    133
D202V5, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4A2 MUTATED        5      5      1
  EIF4A2 WILD-TYPE    177    128     71
D202V6, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4A2 MUTATED        1      2      5      4
  EIF4A2 WILD-TYPE    111     94     87    182
D202V7, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              5               87
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF4A2 MUTATED        1      0      2      0      3      5      1
  EIF4A2 WILD-TYPE     59     50     47     40     60    120     98
D202V8, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              5              120
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4A2 MUTATED        1      4      1      5
  EIF4A2 WILD-TYPE    129     74     67    191
D202V9, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF4A2 MUTATED        0      3      0      2      3      1      0      1
  EIF4A2 WILD-TYPE     40     59     28     78     66     47     43     27
                  vv
clus               CLUS_9
  EIF4A2 MUTATED        1
  EIF4A2 WILD-TYPE     73
D202V10, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4A2 MUTATED        1      1      1      0
  EIF4A2 WILD-TYPE     32     30     26     19
D202V11, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4A2 MUTATED        2      0      1      0
  EIF4A2 WILD-TYPE     52     10     23     22
D202V12, multiclass
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(203) Variable = FAM133B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133B MUTATED        1      0      0      0
  FAM133B WILD-TYPE     45     58     64     43
D203V1, multiclass
[1] "Remove cluster labels:" "FAM133B MUTATED"       
clus
  FAM133B MUTATED FAM133B WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM133B MUTATED        1      0      0
  FAM133B WILD-TYPE     50     83     77
D203V2, multiclass
[1] "Remove cluster labels:" "FAM133B MUTATED"       
clus
  FAM133B MUTATED FAM133B WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM133B WILD-TYPE" "FAM133B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133B MUTATED        5      0      0      0
  FAM133B WILD-TYPE    173    183    101     20
D203V3, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM133B MUTATED        2      0      3
  FAM133B WILD-TYPE     85     80     97
D203V4, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM133B MUTATED        0      2      3
  FAM133B WILD-TYPE     89    158    135
D203V5, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM133B MUTATED        3      0      2
  FAM133B WILD-TYPE    179    133     70
D203V6, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               0               133
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133B MUTATED        0      1      3      1
  FAM133B WILD-TYPE    112     95     89    185
D203V7, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                95
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM133B MUTATED        0      0      3      0      1      0      1
  FAM133B WILD-TYPE     60     50     46     40     62    125     98
D203V8, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133B MUTATED        3      1      0      1
  FAM133B WILD-TYPE    127     77     68    195
D203V9, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM133B MUTATED        0      2      0      1      1      0      1      0
  FAM133B WILD-TYPE     40     60     28     79     68     48     42     28
                   vv
clus                CLUS_9
  FAM133B MUTATED        0
  FAM133B WILD-TYPE     74
D203V10, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133B MUTATED        0      1      0      3
  FAM133B WILD-TYPE     33     30     27     16
D203V11, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133B MUTATED        3      0      1      0
  FAM133B WILD-TYPE     51     10     23     22
D203V12, multiclass
        clus
vv       FAM133B MUTATED FAM133B WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(204) Variable = CATSPER1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER1 MUTATED        3      0      1      2
  CATSPER1 WILD-TYPE     43     58     63     41
D204V1, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER1 MUTATED        3      1      2
  CATSPER1 WILD-TYPE     48     82     75
D204V2, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER1 MUTATED        9      7      1      0
  CATSPER1 WILD-TYPE    169    176    100     20
D204V3, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                7                176
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER1 MUTATED        1      4      8
  CATSPER1 WILD-TYPE     86     76     92
D204V4, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                4                 76
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER1 MUTATED        2      7      7
  CATSPER1 WILD-TYPE     87    153    131
D204V5, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                7                153
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER1 MUTATED        5      8      3
  CATSPER1 WILD-TYPE    177    125     69
D204V6, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                8                125
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER1 MUTATED        8      3      2      6
  CATSPER1 WILD-TYPE    104     93     90    180
D204V7, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                8                104
  CLUS_2                3                 93
  CLUS_3                2                 90
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CATSPER1 MUTATED        5      2      2      2      3      1      4
  CATSPER1 WILD-TYPE     55     48     47     38     60    124     95
D204V8, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                5                 55
  CLUS_2                2                 48
  CLUS_3                2                 47
  CLUS_4                2                 38
  CLUS_5                3                 60
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER1 MUTATED        7      4      1      7
  CATSPER1 WILD-TYPE    123     74     67    189
D204V9, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                4                 74
  CLUS_3                1                 67
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CATSPER1 MUTATED        1      4      2      5      5      1      1      0
  CATSPER1 WILD-TYPE     39     58     26     75     64     47     42     28
                    vv
clus                 CLUS_9
  CATSPER1 MUTATED        0
  CATSPER1 WILD-TYPE     74
D204V10, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                4                 58
  CLUS_3                2                 26
  CLUS_4                5                 75
  CLUS_5                5                 64
  CLUS_6                1                 47
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER1 MUTATED        1      1      2      0
  CATSPER1 WILD-TYPE     32     30     25     19
D204V11, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                2                 25
  CLUS_4                0                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER1 MUTATED        1      0      2      1
  CATSPER1 WILD-TYPE     53     10     22     21
D204V12, multiclass
        clus
vv       CATSPER1 MUTATED CATSPER1 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(205) Variable = GIGYF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        5      0      1      4
  GIGYF2 WILD-TYPE     41     58     63     39
D205V1, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED        4      4      2
  GIGYF2 WILD-TYPE     47     79     75
D205V2, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              4               79
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED       21      3      5      1
  GIGYF2 WILD-TYPE    157    180     96     19
D205V3, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1             21              157
  CLUS_2              3              180
  CLUS_3              5               96
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED       12      0      8
  GIGYF2 WILD-TYPE     75     80     92
D205V4, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1             12               75
  CLUS_2              0               80
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED        3      8     10
  GIGYF2 WILD-TYPE     86    152    128
D205V5, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              8              152
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED       12      6      3
  GIGYF2 WILD-TYPE    170    127     69
D205V6, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        4     10      6     10
  GIGYF2 WILD-TYPE    108     86     86    176
D205V7, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              4              108
  CLUS_2             10               86
  CLUS_3              6               86
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GIGYF2 MUTATED        4      2     12      3      0      3      6
  GIGYF2 WILD-TYPE     56     48     37     37     63    122     93
D205V8, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3             12               37
  CLUS_4              3               37
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED       13      5      1     11
  GIGYF2 WILD-TYPE    117     73     67    185
D205V9, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1             13              117
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GIGYF2 MUTATED        6      6      3      2      6      1      1      3
  GIGYF2 WILD-TYPE     34     56     25     78     63     47     42     25
                  vv
clus               CLUS_9
  GIGYF2 MUTATED        2
  GIGYF2 WILD-TYPE     72
D205V10, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              6               34
  CLUS_2              6               56
  CLUS_3              3               25
  CLUS_4              2               78
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              3               25
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        1      1      0      4
  GIGYF2 WILD-TYPE     32     30     27     15
D205V11, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        5      0      1      0
  GIGYF2 WILD-TYPE     49     10     23     22
D205V12, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(206) Variable = RBM12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        1      0      1      1
  RBM12 WILD-TYPE     45     58     63     42
D206V1, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        1      0      2
  RBM12 WILD-TYPE     50     83     75
D206V2, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED       11      2      2      0
  RBM12 WILD-TYPE    167    181     99     20
D206V3, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        3      1      8
  RBM12 WILD-TYPE     84     79     92
D206V4, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        4      3      4
  RBM12 WILD-TYPE     85    157    134
D206V5, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM12 MUTATED        5      5      1
  RBM12 WILD-TYPE    177    128     71
D206V6, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        2      7      3      3
  RBM12 WILD-TYPE    110     89     89    183
D206V7, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM12 MUTATED        1      3      4      4      1      1      1
  RBM12 WILD-TYPE     59     47     45     36     62    124     98
D206V8, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             4              36
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED       10      1      0      4
  RBM12 WILD-TYPE    120     77     68    192
D206V9, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM12 MUTATED        1      1      1      5      3      1      1      1
  RBM12 WILD-TYPE     39     61     27     75     66     47     42     27
                 vv
clus              CLUS_9
  RBM12 MUTATED        1
  RBM12 WILD-TYPE     73
D206V10, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             5              75
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        1      1      1      1
  RBM12 WILD-TYPE     32     30     26     18
D206V11, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM12 MUTATED        3      0      0      1
  RBM12 WILD-TYPE     51     10     24     21
D206V12, multiclass
        clus
vv       RBM12 MUTATED RBM12 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(207) Variable = EIF2AK4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK4 MUTATED        3      0      0      4
  EIF2AK4 WILD-TYPE     43     58     64     39
D207V1, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK4 MUTATED        4      0      3
  EIF2AK4 WILD-TYPE     47     83     74
D207V2, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK4 MUTATED       15      2      2      0
  EIF2AK4 WILD-TYPE    163    181     99     20
D207V3, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK4 MUTATED        7      1      6
  EIF2AK4 WILD-TYPE     80     79     94
D207V4, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               1                79
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK4 MUTATED        1      4     13
  EIF2AK4 WILD-TYPE     88    156    125
D207V5, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3              13               125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK4 MUTATED       11      5      2
  EIF2AK4 WILD-TYPE    171    128     70
D207V6, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK4 MUTATED        2      6      7      5
  EIF2AK4 WILD-TYPE    110     90     85    181
D207V7, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               6                90
  CLUS_3               7                85
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF2AK4 MUTATED        2      2      5      1      4      0      6
  EIF2AK4 WILD-TYPE     58     48     44     39     59    125     93
D207V8, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               4                59
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK4 MUTATED        7      5      0      8
  EIF2AK4 WILD-TYPE    123     73     68    188
D207V9, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF2AK4 MUTATED        2      6      1      2      7      1      0      0
  EIF2AK4 WILD-TYPE     38     56     27     78     62     47     43     28
                   vv
clus                CLUS_9
  EIF2AK4 MUTATED        1
  EIF2AK4 WILD-TYPE     73
D207V10, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               6                56
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               7                62
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK4 MUTATED        1      1      0      1
  EIF2AK4 WILD-TYPE     32     30     27     18
D207V11, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK4 MUTATED        2      0      0      1
  EIF2AK4 WILD-TYPE     52     10     24     21
D207V12, multiclass
        clus
vv       EIF2AK4 MUTATED EIF2AK4 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(208) Variable = PI4K2B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PI4K2B MUTATED        0      0      0      2
  PI4K2B WILD-TYPE     46     58     64     41
D208V1, multiclass
[1] "Remove cluster labels:" "PI4K2B MUTATED"        
clus
  PI4K2B MUTATED PI4K2B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AY-4071 
"PI4K2B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PI4K2B MUTATED        1      0      1
  PI4K2B WILD-TYPE     50     83     76
D208V2, multiclass
[1] "Remove cluster labels:" "PI4K2B MUTATED"        
clus
  PI4K2B MUTATED PI4K2B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" "PI4K2B WILD-TYPE" 
      TCGA-AY-4071 
"PI4K2B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PI4K2B MUTATED        4      8      1      1
  PI4K2B WILD-TYPE    174    175    100     19
D208V3, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              4              174
  CLUS_2              8              175
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PI4K2B MUTATED        2      6      4
  PI4K2B WILD-TYPE     85     74     96
D208V4, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              2               85
  CLUS_2              6               74
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PI4K2B MUTATED        4      5      2
  PI4K2B WILD-TYPE     85    155    136
D208V5, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              4               85
  CLUS_2              5              155
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PI4K2B MUTATED        7      3      1
  PI4K2B WILD-TYPE    175    130     71
D208V6, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PI4K2B MUTATED        8      1      3      2
  PI4K2B WILD-TYPE    104     95     89    184
D208V7, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              8              104
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PI4K2B MUTATED        5      1      2      2      2      0      2
  PI4K2B WILD-TYPE     55     49     47     38     61    125     97
D208V8, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              5               55
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PI4K2B MUTATED        7      2      3      2
  PI4K2B WILD-TYPE    123     76     65    194
D208V9, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              7              123
  CLUS_2              2               76
  CLUS_3              3               65
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PI4K2B MUTATED        1      2      4      1      2      0      4      0
  PI4K2B WILD-TYPE     39     60     24     79     67     48     39     28
                  vv
clus               CLUS_9
  PI4K2B MUTATED        0
  PI4K2B WILD-TYPE     74
D208V10, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              4               24
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              4               39
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PI4K2B MUTATED        1      0      1      1
  PI4K2B WILD-TYPE     32     31     26     18
D208V11, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PI4K2B MUTATED        1      0      2      0
  PI4K2B WILD-TYPE     53     10     22     22
D208V12, multiclass
        clus
vv       PI4K2B MUTATED PI4K2B WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(209) Variable = HIPK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK2 MUTATED        2      0      0      1
  HIPK2 WILD-TYPE     44     58     64     42
D209V1, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK2 MUTATED        3      0      0
  HIPK2 WILD-TYPE     48     83     77
D209V2, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK2 MUTATED       12      6      5      3
  HIPK2 WILD-TYPE    166    177     96     17
D209V3, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             6             177
  CLUS_3             5              96
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK2 MUTATED        8      4     10
  HIPK2 WILD-TYPE     79     76     90
D209V4, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             4              76
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK2 MUTATED        1      7     14
  HIPK2 WILD-TYPE     88    153    124
D209V5, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK2 MUTATED       14      5      3
  HIPK2 WILD-TYPE    168    128     69
D209V6, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK2 MUTATED        6     11      5      4
  HIPK2 WILD-TYPE    106     85     87    182
D209V7, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             6             106
  CLUS_2            11              85
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIPK2 MUTATED        3      3      9      3      4      0      4
  HIPK2 WILD-TYPE     57     47     40     37     59    125     95
D209V8, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             3              37
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK2 MUTATED       14      5      2      5
  HIPK2 WILD-TYPE    116     73     66    191
D209V9, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1            14             116
  CLUS_2             5              73
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIPK2 MUTATED        7      5      2      1      5      1      3      0
  HIPK2 WILD-TYPE     33     57     26     79     64     47     40     28
                 vv
clus              CLUS_9
  HIPK2 MUTATED        2
  HIPK2 WILD-TYPE     72
D209V10, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             7              33
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK2 MUTATED        1      2      0      2
  HIPK2 WILD-TYPE     32     29     27     17
D209V11, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK2 MUTATED        3      1      0      1
  HIPK2 WILD-TYPE     51      9     24     21
D209V12, multiclass
        clus
vv       HIPK2 MUTATED HIPK2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(210) Variable = SLC4A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A10 MUTATED        1      0      0      2
  SLC4A10 WILD-TYPE     45     58     64     41
D210V1, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC4A10 MUTATED        1      1      1
  SLC4A10 WILD-TYPE     50     82     76
D210V2, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A10 MUTATED       17      4      6      2
  SLC4A10 WILD-TYPE    161    179     95     18
D210V3, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1              17               161
  CLUS_2               4               179
  CLUS_3               6                95
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC4A10 MUTATED        8      4     13
  SLC4A10 WILD-TYPE     79     76     87
D210V4, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               8                79
  CLUS_2               4                76
  CLUS_3              13                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC4A10 MUTATED        5     11      9
  SLC4A10 WILD-TYPE     84    149    129
D210V5, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               5                84
  CLUS_2              11               149
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC4A10 MUTATED       12     10      3
  SLC4A10 WILD-TYPE    170    123     69
D210V6, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1              12               170
  CLUS_2              10               123
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A10 MUTATED        6      9      8      5
  SLC4A10 WILD-TYPE    106     87     84    181
D210V7, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               6               106
  CLUS_2               9                87
  CLUS_3               8                84
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC4A10 MUTATED        5      9      4      0      6      1      3
  SLC4A10 WILD-TYPE     55     41     45     40     57    124     96
D210V8, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               9                41
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               6                57
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A10 MUTATED       15      6      1      7
  SLC4A10 WILD-TYPE    115     72     67    189
D210V9, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1              15               115
  CLUS_2               6                72
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC4A10 MUTATED        6      5      6      2      3      3      2      0
  SLC4A10 WILD-TYPE     34     57     22     78     66     45     41     28
                   vv
clus                CLUS_9
  SLC4A10 MUTATED        2
  SLC4A10 WILD-TYPE     72
D210V10, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               6                34
  CLUS_2               5                57
  CLUS_3               6                22
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               3                45
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A10 MUTATED        4      2      1      2
  SLC4A10 WILD-TYPE     29     29     26     17
D210V11, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A10 MUTATED        6      1      0      2
  SLC4A10 WILD-TYPE     48      9     24     20
D210V12, multiclass
        clus
vv       SLC4A10 MUTATED SLC4A10 WILD-TYPE
  CLUS_1               6                48
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(211) Variable = KLHL10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL10 MUTATED        0      0      0      1
  KLHL10 WILD-TYPE     46     58     64     42
D211V1, multiclass
[1] "Remove cluster labels:" "KLHL10 MUTATED"        
clus
  KLHL10 MUTATED KLHL10 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL10 MUTATED        0      0      1
  KLHL10 WILD-TYPE     51     83     76
D211V2, multiclass
[1] "Remove cluster labels:" "KLHL10 MUTATED"        
clus
  KLHL10 MUTATED KLHL10 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"KLHL10 WILD-TYPE" "KLHL10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL10 MUTATED       10      9      0      2
  KLHL10 WILD-TYPE    168    174    101     18
D211V3, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              9              174
  CLUS_3              0              101
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL10 MUTATED        8      5      6
  KLHL10 WILD-TYPE     79     75     94
D211V4, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              5               75
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL10 MUTATED        3      5     11
  KLHL10 WILD-TYPE     86    155    127
D211V5, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL10 MUTATED       13      5      1
  KLHL10 WILD-TYPE    169    128     71
D211V6, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL10 MUTATED        6      6      7      1
  KLHL10 WILD-TYPE    106     90     85    185
D211V7, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              6               90
  CLUS_3              7               85
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLHL10 MUTATED        4      3     10      0      3      0      0
  KLHL10 WILD-TYPE     56     47     39     40     60    125     99
D211V8, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              3               47
  CLUS_3             10               39
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL10 MUTATED        9      6      3      3
  KLHL10 WILD-TYPE    121     72     65    193
D211V9, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              6               72
  CLUS_3              3               65
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLHL10 MUTATED        3      6      1      2      4      2      3      0
  KLHL10 WILD-TYPE     37     56     27     78     65     46     40     28
                  vv
clus               CLUS_9
  KLHL10 MUTATED        0
  KLHL10 WILD-TYPE     74
D211V10, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL10 MUTATED        2      1      0      3
  KLHL10 WILD-TYPE     31     30     27     16
D211V11, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL10 MUTATED        4      1      0      1
  KLHL10 WILD-TYPE     50      9     24     21
D211V12, multiclass
        clus
vv       KLHL10 MUTATED KLHL10 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(212) Variable = LINGO4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        2      0      0      2
  LINGO4 WILD-TYPE     44     58     64     41
D212V1, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        4      0      0
  LINGO4 WILD-TYPE     47     83     77
D212V2, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        9      1      0      0
  LINGO4 WILD-TYPE    169    182    101     20
D212V3, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        1      2      2
  LINGO4 WILD-TYPE     86     78     98
D212V4, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        3      2      5
  LINGO4 WILD-TYPE     86    158    133
D212V5, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        4      5      1
  LINGO4 WILD-TYPE    178    128     71
D212V6, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        1      2      1      6
  LINGO4 WILD-TYPE    111     94     91    180
D212V7, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LINGO4 MUTATED        1      0      3      0      0      1      5
  LINGO4 WILD-TYPE     59     50     46     40     63    124     94
D212V8, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        3      2      0      4
  LINGO4 WILD-TYPE    127     76     68    192
D212V9, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LINGO4 MUTATED        1      1      0      0      5      0      0      2
  LINGO4 WILD-TYPE     39     61     28     80     64     48     43     26
                  vv
clus               CLUS_9
  LINGO4 MUTATED        0
  LINGO4 WILD-TYPE     74
D212V10, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        0      0      0      1
  LINGO4 WILD-TYPE     33     31     27     18
D212V11, multiclass
[1] "Remove cluster labels:" "LINGO4 MUTATED"        
clus
  LINGO4 MUTATED LINGO4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-G5-6641 
"LINGO4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        0      0      1      0
  LINGO4 WILD-TYPE     54     10     23     22
D212V12, multiclass
[1] "Remove cluster labels:" "LINGO4 MUTATED"        
clus
  LINGO4 MUTATED LINGO4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" "LINGO4 WILD-TYPE" 
      TCGA-G5-6641 
"LINGO4 WILD-TYPE" 

Clustering(213) Variable = MMP13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        0      0      0      3
  MMP13 WILD-TYPE     46     58     64     40
D213V1, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        0      1      2
  MMP13 WILD-TYPE     51     82     75
D213V2, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED       10      4      1      0
  MMP13 WILD-TYPE    168    179    100     20
D213V3, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        5      1      7
  MMP13 WILD-TYPE     82     79     93
D213V4, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        1      8      6
  MMP13 WILD-TYPE     88    152    132
D213V5, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP13 MUTATED        8      7      0
  MMP13 WILD-TYPE    174    126     72
D213V6, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             7             126
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        2      7      5      2
  MMP13 WILD-TYPE    110     89     87    184
D213V7, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP13 MUTATED        1      4      5      1      2      0      3
  MMP13 WILD-TYPE     59     46     44     39     61    125     96
D213V8, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        9      3      1      3
  MMP13 WILD-TYPE    121     75     67    193
D213V9, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MMP13 MUTATED        0      6      3      1      3      1      2      0
  MMP13 WILD-TYPE     40     56     25     79     66     47     41     28
                 vv
clus              CLUS_9
  MMP13 MUTATED        0
  MMP13 WILD-TYPE     74
D213V10, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        1      1      2      3
  MMP13 WILD-TYPE     32     30     25     16
D213V11, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP13 MUTATED        4      0      3      0
  MMP13 WILD-TYPE     50     10     21     22
D213V12, multiclass
        clus
vv       MMP13 MUTATED MMP13 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(214) Variable = DNAH12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH12 MUTATED        5      0      0      2
  DNAH12 WILD-TYPE     41     58     64     41
D214V1, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH12 MUTATED        5      1      1
  DNAH12 WILD-TYPE     46     82     76
D214V2, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH12 MUTATED       20      1      2      1
  DNAH12 WILD-TYPE    158    182     99     19
D214V3, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1             20              158
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH12 MUTATED        7      2     10
  DNAH12 WILD-TYPE     80     78     90
D214V4, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH12 MUTATED        6      8      8
  DNAH12 WILD-TYPE     83    152    130
D214V5, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              8              152
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH12 MUTATED        9      7      6
  DNAH12 WILD-TYPE    173    126     66
D214V6, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              7              126
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH12 MUTATED        0      9      7      9
  DNAH12 WILD-TYPE    112     87     85    177
D214V7, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              9               87
  CLUS_3              7               85
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH12 MUTATED        1      5      7      1      3      1      7
  DNAH12 WILD-TYPE     59     45     42     39     60    124     92
D214V8, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              5               45
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH12 MUTATED        7      5      0     13
  DNAH12 WILD-TYPE    123     73     68    183
D214V9, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAH12 MUTATED        6      4      2      3      6      0      0      1
  DNAH12 WILD-TYPE     34     58     26     77     63     48     43     27
                  vv
clus               CLUS_9
  DNAH12 MUTATED        3
  DNAH12 WILD-TYPE     71
D214V10, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              6               34
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH12 MUTATED        1      1      1      2
  DNAH12 WILD-TYPE     32     30     26     17
D214V11, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH12 MUTATED        4      0      0      1
  DNAH12 WILD-TYPE     50     10     24     21
D214V12, multiclass
        clus
vv       DNAH12 MUTATED DNAH12 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(215) Variable = UQCRC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRC2 MUTATED        0      0      1      1
  UQCRC2 WILD-TYPE     46     58     63     42
D215V1, multiclass
[1] "Remove cluster labels:" "UQCRC2 MUTATED"        
clus
  UQCRC2 MUTATED UQCRC2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AY-4071 
"UQCRC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UQCRC2 MUTATED        0      1      1
  UQCRC2 WILD-TYPE     51     82     76
D215V2, multiclass
[1] "Remove cluster labels:" "UQCRC2 MUTATED"        
clus
  UQCRC2 MUTATED UQCRC2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" "UQCRC2 WILD-TYPE" 
      TCGA-AY-4071 
"UQCRC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRC2 MUTATED        3      4      3      0
  UQCRC2 WILD-TYPE    175    179     98     20
D215V3, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UQCRC2 MUTATED        0      4      4
  UQCRC2 WILD-TYPE     87     76     96
D215V4, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              4               76
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UQCRC2 MUTATED        1      2      4
  UQCRC2 WILD-TYPE     88    158    134
D215V5, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UQCRC2 MUTATED        5      2      0
  UQCRC2 WILD-TYPE    177    131     72
D215V6, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRC2 MUTATED        3      4      0      3
  UQCRC2 WILD-TYPE    109     92     92    183
D215V7, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              0               92
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UQCRC2 MUTATED        1      1      2      1      2      1      2
  UQCRC2 WILD-TYPE     59     49     47     39     61    124     97
D215V8, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRC2 MUTATED        4      2      1      3
  UQCRC2 WILD-TYPE    126     76     67    193
D215V9, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UQCRC2 MUTATED        2      2      2      1      1      0      0      1
  UQCRC2 WILD-TYPE     38     60     26     79     68     48     43     27
                  vv
clus               CLUS_9
  UQCRC2 MUTATED        1
  UQCRC2 WILD-TYPE     73
D215V10, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRC2 MUTATED        0      1      1      1
  UQCRC2 WILD-TYPE     33     30     26     18
D215V11, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRC2 MUTATED        0      2      1      0
  UQCRC2 WILD-TYPE     54      8     23     22
D215V12, multiclass
        clus
vv       UQCRC2 MUTATED UQCRC2 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              2                8
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(216) Variable = E2F7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        4      0      1      5
  E2F7 WILD-TYPE     42     58     63     38
D216V1, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED        6      2      2
  E2F7 WILD-TYPE     45     81     75
D216V2, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED       18      4      4      0
  E2F7 WILD-TYPE    160    179     97     20
D216V3, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            4            179
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED        3      5      8
  E2F7 WILD-TYPE     84     75     92
D216V4, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            5             75
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED        3      7      8
  E2F7 WILD-TYPE     86    153    130
D216V5, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED       10      5      3
  E2F7 WILD-TYPE    172    128     69
D216V6, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        6      4      6     10
  E2F7 WILD-TYPE    106     92     86    176
D216V7, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            4             92
  CLUS_3            6             86
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  E2F7 MUTATED        2      1      9      1      4      2      7
  E2F7 WILD-TYPE     58     49     40     39     59    123     92
D216V8, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            9             40
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED       10      3      1     11
  E2F7 WILD-TYPE    120     75     67    185
D216V9, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  E2F7 MUTATED        1      4      3      6      8      1      1      1      0
  E2F7 WILD-TYPE     39     58     25     74     61     47     42     27     74
D216V10, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            6             74
  CLUS_5            8             61
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        1      0      1      3
  E2F7 WILD-TYPE     32     31     26     16
D216V11, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        3      0      2      0
  E2F7 WILD-TYPE     51     10     22     22
D216V12, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(217) Variable = FHOD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        5      0      1      5
  FHOD3 WILD-TYPE     41     58     63     38
D217V1, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED        7      2      2
  FHOD3 WILD-TYPE     44     81     75
D217V2, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED       25      1      3      1
  FHOD3 WILD-TYPE    153    182     98     19
D217V3, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            25             153
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED        8      2      9
  FHOD3 WILD-TYPE     79     78     91
D217V4, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED        3     10     14
  FHOD3 WILD-TYPE     86    150    124
D217V5, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            10             150
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED       17      7      3
  FHOD3 WILD-TYPE    165    126     69
D217V6, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            17             165
  CLUS_2             7             126
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        2     10      8     10
  FHOD3 WILD-TYPE    110     86     84    176
D217V7, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2            10              86
  CLUS_3             8              84
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FHOD3 MUTATED        4      2     12      0      1      2      9
  FHOD3 WILD-TYPE     56     48     37     40     62    123     90
D217V8, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3            12              37
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED       10      3      1     13
  FHOD3 WILD-TYPE    120     75     67    183
D217V9, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FHOD3 MUTATED        1      6      2      2     13      1      2      0
  FHOD3 WILD-TYPE     39     56     26     78     56     47     41     28
                 vv
clus              CLUS_9
  FHOD3 MUTATED        0
  FHOD3 WILD-TYPE     74
D217V10, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5            13              56
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        1      0      0      6
  FHOD3 WILD-TYPE     32     31     27     13
D217V11, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        5      0      2      0
  FHOD3 WILD-TYPE     49     10     22     22
D217V12, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(218) Variable = MLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        7      0      1      3
  MLL3 WILD-TYPE     39     58     63     40
D218V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            7             39
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        7      2      2
  MLL3 WILD-TYPE     44     81     75
D218V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       33     22      9      0
  MLL3 WILD-TYPE    145    161     92     20
D218V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           33            145
  CLUS_2           22            161
  CLUS_3            9             92
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       18     14     23
  MLL3 WILD-TYPE     69     66     77
D218V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           18             69
  CLUS_2           14             66
  CLUS_3           23             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        7     27     20
  MLL3 WILD-TYPE     82    133    118
D218V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            7             82
  CLUS_2           27            133
  CLUS_3           20            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       29     20      5
  MLL3 WILD-TYPE    153    113     67
D218V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           29            153
  CLUS_2           20            113
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       17     18     18     13
  MLL3 WILD-TYPE     95     78     74    173
D218V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           17             95
  CLUS_2           18             78
  CLUS_3           18             74
  CLUS_4           13            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL3 MUTATED       11     10     15      4     13      4      9
  MLL3 WILD-TYPE     49     40     34     36     50    121     90
D218V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           11             49
  CLUS_2           10             40
  CLUS_3           15             34
  CLUS_4            4             36
  CLUS_5           13             50
  CLUS_6            4            121
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       27     17      5     16
  MLL3 WILD-TYPE    103     61     63    180
D218V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           27            103
  CLUS_2           17             61
  CLUS_3            5             63
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MLL3 MUTATED        9     17      3      8     15      2      6      2      3
  MLL3 WILD-TYPE     31     45     25     72     54     46     37     26     71
D218V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            9             31
  CLUS_2           17             45
  CLUS_3            3             25
  CLUS_4            8             72
  CLUS_5           15             54
  CLUS_6            2             46
  CLUS_7            6             37
  CLUS_8            2             26
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        7      3      2      4
  MLL3 WILD-TYPE     26     28     25     15
D218V11, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            7             26
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       11      1      2      2
  MLL3 WILD-TYPE     43      9     22     20
D218V12, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           11             43
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(219) Variable = SCD5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD5 MUTATED        1      1      0      0
  SCD5 WILD-TYPE     45     57     64     43
D219V1, multiclass
[1] "Remove cluster labels:" "SCD5 MUTATED"          
clus
  SCD5 MUTATED SCD5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AY-4071 
"SCD5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCD5 MUTATED        1      1      0
  SCD5 WILD-TYPE     50     82     77
D219V2, multiclass
[1] "Remove cluster labels:" "SCD5 MUTATED"          
clus
  SCD5 MUTATED SCD5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AY-4071 
"SCD5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD5 MUTATED        4      2      2      0
  SCD5 WILD-TYPE    174    181     99     20
D219V3, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCD5 MUTATED        2      1      3
  SCD5 WILD-TYPE     85     79     97
D219V4, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCD5 MUTATED        0      2      4
  SCD5 WILD-TYPE     89    158    134
D219V5, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCD5 MUTATED        2      1      3
  SCD5 WILD-TYPE    180    132     69
D219V6, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            1            132
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD5 MUTATED        1      3      2      2
  SCD5 WILD-TYPE    111     93     90    184
D219V7, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCD5 MUTATED        0      2      3      1      0      0      2
  SCD5 WILD-TYPE     60     48     46     39     63    125     97
D219V8, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD5 MUTATED        3      1      2      2
  SCD5 WILD-TYPE    127     77     66    194
D219V9, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SCD5 MUTATED        0      1      1      2      1      0      3      0      0
  SCD5 WILD-TYPE     40     61     27     78     68     48     40     28     74
D219V10, multiclass
        clus
vv       SCD5 MUTATED SCD5 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD5 MUTATED        1      0      0      0
  SCD5 WILD-TYPE     32     31     27     19
D219V11, multiclass
[1] "Remove cluster labels:" "SCD5 MUTATED"          
clus
  SCD5 MUTATED SCD5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-G5-6641 
"SCD5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD5 MUTATED        1      0      0      0
  SCD5 WILD-TYPE     53     10     24     22
D219V12, multiclass
[1] "Remove cluster labels:" "SCD5 MUTATED"          
clus
  SCD5 MUTATED SCD5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" "SCD5 WILD-TYPE" 
    TCGA-G5-6641 
"SCD5 WILD-TYPE" 

Clustering(220) Variable = DDX23 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX23 MUTATED        3      0      0      2
  DDX23 WILD-TYPE     43     58     64     41
D220V1, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX23 MUTATED        3      1      1
  DDX23 WILD-TYPE     48     82     76
D220V2, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX23 MUTATED       12      5      3      0
  DDX23 WILD-TYPE    166    178     98     20
D220V3, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             5             178
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX23 MUTATED        5      4      7
  DDX23 WILD-TYPE     82     76     93
D220V4, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4              76
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX23 MUTATED        1      4     13
  DDX23 WILD-TYPE     88    156    125
D220V5, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX23 MUTATED       11      6      1
  DDX23 WILD-TYPE    171    127     71
D220V6, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX23 MUTATED        5      6      5      5
  DDX23 WILD-TYPE    107     90     87    181
D220V7, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX23 MUTATED        1      4      4      4      3      2      3
  DDX23 WILD-TYPE     59     46     45     36     60    123     96
D220V8, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             4              36
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX23 MUTATED        9      3      3      3
  DDX23 WILD-TYPE    121     75     65    193
D220V9, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             3              65
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX23 MUTATED        3      3      1      2      3      2      3      0
  DDX23 WILD-TYPE     37     59     27     78     66     46     40     28
                 vv
clus              CLUS_9
  DDX23 MUTATED        1
  DDX23 WILD-TYPE     73
D220V10, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX23 MUTATED        3      0      1      2
  DDX23 WILD-TYPE     30     31     26     17
D220V11, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX23 MUTATED        2      0      1      3
  DDX23 WILD-TYPE     52     10     23     19
D220V12, multiclass
        clus
vv       DDX23 MUTATED DDX23 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(221) Variable = THOC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC5 MUTATED        1      0      0      3
  THOC5 WILD-TYPE     45     58     64     40
D221V1, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC5 MUTATED        2      1      1
  THOC5 WILD-TYPE     49     82     76
D221V2, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC5 MUTATED       12      0      3      1
  THOC5 WILD-TYPE    166    183     98     19
D221V3, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             0             183
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC5 MUTATED        4      1      7
  THOC5 WILD-TYPE     83     79     93
D221V4, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC5 MUTATED        2      4      4
  THOC5 WILD-TYPE     87    156    134
D221V5, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC5 MUTATED        4      3      3
  THOC5 WILD-TYPE    178    130     69
D221V6, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC5 MUTATED        1      8      2      5
  THOC5 WILD-TYPE    111     88     90    181
D221V7, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             8              88
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THOC5 MUTATED        1      1      6      3      0      1      4
  THOC5 WILD-TYPE     59     49     43     37     63    124     95
D221V8, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC5 MUTATED        8      2      0      5
  THOC5 WILD-TYPE    122     76     68    191
D221V9, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  THOC5 MUTATED        3      1      2      2      5      0      1      0
  THOC5 WILD-TYPE     37     61     26     78     64     48     42     28
                 vv
clus              CLUS_9
  THOC5 MUTATED        1
  THOC5 WILD-TYPE     73
D221V10, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC5 MUTATED        1      2      0      2
  THOC5 WILD-TYPE     32     29     27     17
D221V11, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC5 MUTATED        3      0      1      1
  THOC5 WILD-TYPE     51     10     23     21
D221V12, multiclass
        clus
vv       THOC5 MUTATED THOC5 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(222) Variable = ADAM28 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        2      0      0      2
  ADAM28 WILD-TYPE     44     58     64     41
D222V1, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED        2      1      1
  ADAM28 WILD-TYPE     49     82     76
D222V2, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED       12      5      3      0
  ADAM28 WILD-TYPE    166    178     98     20
D222V3, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED        6      3      7
  ADAM28 WILD-TYPE     81     77     93
D222V4, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              3               77
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED        2      7      8
  ADAM28 WILD-TYPE     87    153    130
D222V5, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED        9      6      2
  ADAM28 WILD-TYPE    173    127     70
D222V6, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        6      4      5      5
  ADAM28 WILD-TYPE    106     92     87    181
D222V7, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM28 MUTATED        4      4      5      2      1      1      3
  ADAM28 WILD-TYPE     56     46     44     38     62    124     96
D222V8, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              4               46
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        7      4      2      6
  ADAM28 WILD-TYPE    123     74     66    190
D222V9, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM28 MUTATED        2      3      0      6      5      0      2      0
  ADAM28 WILD-TYPE     38     59     28     74     64     48     41     28
                  vv
clus               CLUS_9
  ADAM28 MUTATED        1
  ADAM28 WILD-TYPE     73
D222V10, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              6               74
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        1      1      2      0
  ADAM28 WILD-TYPE     32     30     25     19
D222V11, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        2      0      2      0
  ADAM28 WILD-TYPE     52     10     22     22
D222V12, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(223) Variable = SMAD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD3 MUTATED        3      0      2      3
  SMAD3 WILD-TYPE     43     58     62     40
D223V1, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD3 MUTATED        3      3      2
  SMAD3 WILD-TYPE     48     80     75
D223V2, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD3 MUTATED        9      4      4      0
  SMAD3 WILD-TYPE    169    179     97     20
D223V3, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD3 MUTATED        4      4      3
  SMAD3 WILD-TYPE     83     76     97
D223V4, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             4              76
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD3 MUTATED        4      7      5
  SMAD3 WILD-TYPE     85    153    133
D223V5, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             7             153
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD3 MUTATED        4      8      4
  SMAD3 WILD-TYPE    178    125     68
D223V6, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD3 MUTATED        3      4      2     10
  SMAD3 WILD-TYPE    109     92     90    176
D223V7, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAD3 MUTATED        4      1      3      0      2      4      5
  SMAD3 WILD-TYPE     56     49     46     40     61    121     94
D223V8, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             4             121
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD3 MUTATED        5      1      3     10
  SMAD3 WILD-TYPE    125     77     65    186
D223V9, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMAD3 MUTATED        0      1      1      4      7      1      2      0
  SMAD3 WILD-TYPE     40     61     27     76     62     47     41     28
                 vv
clus              CLUS_9
  SMAD3 MUTATED        3
  SMAD3 WILD-TYPE     71
D223V10, multiclass
        clus
vv       SMAD3 MUTATED SMAD3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD3 MUTATED        0      0      1      1
  SMAD3 WILD-TYPE     33     31     26     18
D223V11, multiclass
[1] "Remove cluster labels:" "SMAD3 MUTATED"         
clus
  SMAD3 MUTATED SMAD3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD3 MUTATED        0      0      1      1
  SMAD3 WILD-TYPE     54     10     23     21
D223V12, multiclass
[1] "Remove cluster labels:" "SMAD3 MUTATED"         
clus
  SMAD3 MUTATED SMAD3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" "SMAD3 WILD-TYPE" 

Clustering(224) Variable = SGK269 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK269 MUTATED        0      0      0      3
  SGK269 WILD-TYPE     46     58     64     40
D224V1, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK269 MUTATED        1      0      2
  SGK269 WILD-TYPE     50     83     75
D224V2, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK269 MUTATED       19      4      0      0
  SGK269 WILD-TYPE    159    179    101     20
D224V3, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              4              179
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK269 MUTATED        5      3     12
  SGK269 WILD-TYPE     82     77     88
D224V4, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK269 MUTATED        4      5     11
  SGK269 WILD-TYPE     85    155    127
D224V5, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              5              155
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK269 MUTATED       11      6      3
  SGK269 WILD-TYPE    171    127     69
D224V6, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK269 MUTATED        4     10      6      3
  SGK269 WILD-TYPE    108     86     86    183
D224V7, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              4              108
  CLUS_2             10               86
  CLUS_3              6               86
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SGK269 MUTATED        4      4     11      0      2      0      2
  SGK269 WILD-TYPE     56     46     38     40     61    125     97
D224V8, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              4               46
  CLUS_3             11               38
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK269 MUTATED       12      5      1      5
  SGK269 WILD-TYPE    118     73     67    191
D224V9, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1             12              118
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SGK269 MUTATED        4      5      1      1      7      2      3      0
  SGK269 WILD-TYPE     36     57     27     79     62     46     40     28
                  vv
clus               CLUS_9
  SGK269 MUTATED        0
  SGK269 WILD-TYPE     74
D224V10, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK269 MUTATED        1      1      1      4
  SGK269 WILD-TYPE     32     30     26     15
D224V11, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK269 MUTATED        3      1      2      1
  SGK269 WILD-TYPE     51      9     22     21
D224V12, multiclass
        clus
vv       SGK269 MUTATED SGK269 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(225) Variable = FLT3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT3 MUTATED        2      0      0      3
  FLT3 WILD-TYPE     44     58     64     40
D225V1, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT3 MUTATED        2      2      1
  FLT3 WILD-TYPE     49     81     76
D225V2, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT3 MUTATED       14     14      3      0
  FLT3 WILD-TYPE    164    169     98     20
D225V3, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1           14            164
  CLUS_2           14            169
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT3 MUTATED        6     13      7
  FLT3 WILD-TYPE     81     67     93
D225V4, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            6             81
  CLUS_2           13             67
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT3 MUTATED        6     14     10
  FLT3 WILD-TYPE     83    146    128
D225V5, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            6             83
  CLUS_2           14            146
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT3 MUTATED       14     14      2
  FLT3 WILD-TYPE    168    119     70
D225V6, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1           14            168
  CLUS_2           14            119
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT3 MUTATED       11      6     10      5
  FLT3 WILD-TYPE    101     90     82    181
D225V7, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1           11            101
  CLUS_2            6             90
  CLUS_3           10             82
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLT3 MUTATED       11      6      3      2      6      1      3
  FLT3 WILD-TYPE     49     44     46     38     57    124     96
D225V8, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1           11             49
  CLUS_2            6             44
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            6             57
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT3 MUTATED       12      5      8      7
  FLT3 WILD-TYPE    118     73     60    189
D225V9, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1           12            118
  CLUS_2            5             73
  CLUS_3            8             60
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FLT3 MUTATED        5      8      3      6      4      1      5      0      0
  FLT3 WILD-TYPE     35     54     25     74     65     47     38     28     74
D225V10, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            8             54
  CLUS_3            3             25
  CLUS_4            6             74
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            5             38
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT3 MUTATED        3      2      5      0
  FLT3 WILD-TYPE     30     29     22     19
D225V11, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            5             22
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT3 MUTATED        3      3      3      1
  FLT3 WILD-TYPE     51      7     21     21
D225V12, multiclass
        clus
vv       FLT3 MUTATED FLT3 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            3              7
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(226) Variable = RNF128 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        0      0      0      0
  RNF128 WILD-TYPE     46     58     64     43
D226V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        0      0      0
  RNF128 WILD-TYPE     51     83     77
D226V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED       14      1      0      0
  RNF128 WILD-TYPE    164    182    101     20
D226V3, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        3      1     10
  RNF128 WILD-TYPE     84     79     90
D226V4, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        1      6      6
  RNF128 WILD-TYPE     88    154    132
D226V5, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        5      6      2
  RNF128 WILD-TYPE    177    127     70
D226V6, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        2      7      6      0
  RNF128 WILD-TYPE    110     89     86    186
D226V7, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              6               86
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF128 MUTATED        1      2      9      2      0      0      1
  RNF128 WILD-TYPE     59     48     40     38     63    125     98
D226V8, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              9               40
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        6      3      1      5
  RNF128 WILD-TYPE    124     75     67    191
D226V9, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF128 MUTATED        2      2      1      3      4      0      2      0
  RNF128 WILD-TYPE     38     60     27     77     65     48     41     28
                  vv
clus               CLUS_9
  RNF128 MUTATED        1
  RNF128 WILD-TYPE     73
D226V10, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        1      0      0      2
  RNF128 WILD-TYPE     32     31     27     17
D226V11, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        3      0      0      0
  RNF128 WILD-TYPE     51     10     24     22
D226V12, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(227) Variable = MOBKL2B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL2B MUTATED        0      0      0      0
  MOBKL2B WILD-TYPE     46     58     64     43
D227V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOBKL2B MUTATED        0      0      0
  MOBKL2B WILD-TYPE     51     83     77
D227V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL2B MUTATED        4      4      0      0
  MOBKL2B WILD-TYPE    174    179    101     20
D227V3, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               4               174
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOBKL2B MUTATED        2      2      4
  MOBKL2B WILD-TYPE     85     78     96
D227V4, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOBKL2B MUTATED        2      4      2
  MOBKL2B WILD-TYPE     87    156    136
D227V5, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOBKL2B MUTATED        5      2      1
  MOBKL2B WILD-TYPE    177    131     71
D227V6, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               5               177
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL2B MUTATED        3      3      3      0
  MOBKL2B WILD-TYPE    109     93     89    186
D227V7, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MOBKL2B MUTATED        2      5      1      0      1      0      0
  MOBKL2B WILD-TYPE     58     45     48     40     62    125     99
D227V8, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               2                58
  CLUS_2               5                45
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL2B MUTATED        7      1      0      1
  MOBKL2B WILD-TYPE    123     77     68    195
D227V9, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               7               123
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MOBKL2B MUTATED        2      2      0      2      0      1      2      0
  MOBKL2B WILD-TYPE     38     60     28     78     69     47     41     28
                   vv
clus                CLUS_9
  MOBKL2B MUTATED        0
  MOBKL2B WILD-TYPE     74
D227V10, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               0                69
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL2B MUTATED        2      1      0      1
  MOBKL2B WILD-TYPE     31     30     27     18
D227V11, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL2B MUTATED        3      0      1      0
  MOBKL2B WILD-TYPE     51     10     23     22
D227V12, multiclass
        clus
vv       MOBKL2B MUTATED MOBKL2B WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(228) Variable = NT5DC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC3 MUTATED        1      0      0      0
  NT5DC3 WILD-TYPE     45     58     64     43
D228V1, multiclass
[1] "Remove cluster labels:" "NT5DC3 MUTATED"        
clus
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               1              210 
      TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3809 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC3 MUTATED        1      0      0
  NT5DC3 WILD-TYPE     50     83     77
D228V2, multiclass
[1] "Remove cluster labels:" "NT5DC3 MUTATED"        
clus
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               1              210 
      TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3809 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC3 MUTATED        8      3      3      0
  NT5DC3 WILD-TYPE    170    180     98     20
D228V3, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC3 MUTATED        4      2      7
  NT5DC3 WILD-TYPE     83     78     93
D228V4, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC3 MUTATED        3      3      7
  NT5DC3 WILD-TYPE     86    157    131
D228V5, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC3 MUTATED        8      3      2
  NT5DC3 WILD-TYPE    174    130     70
D228V6, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC3 MUTATED        3      6      4      1
  NT5DC3 WILD-TYPE    109     90     88    185
D228V7, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NT5DC3 MUTATED        1      4      5      2      1      0      1
  NT5DC3 WILD-TYPE     59     46     44     38     62    125     98
D228V8, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC3 MUTATED        7      3      0      4
  NT5DC3 WILD-TYPE    123     75     68    192
D228V9, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NT5DC3 MUTATED        2      3      1      1      5      2      0      0
  NT5DC3 WILD-TYPE     38     59     27     79     64     46     43     28
                  vv
clus               CLUS_9
  NT5DC3 MUTATED        0
  NT5DC3 WILD-TYPE     74
D228V10, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC3 MUTATED        0      0      1      4
  NT5DC3 WILD-TYPE     33     31     26     15
D228V11, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC3 MUTATED        2      0      3      0
  NT5DC3 WILD-TYPE     52     10     21     22
D228V12, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(229) Variable = USP29 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP29 MUTATED        5      0      0      4
  USP29 WILD-TYPE     41     58     64     39
D229V1, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP29 MUTATED        5      2      2
  USP29 WILD-TYPE     46     81     75
D229V2, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP29 MUTATED       19      1      1      1
  USP29 WILD-TYPE    159    182    100     19
D229V3, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP29 MUTATED        4      1      8
  USP29 WILD-TYPE     83     79     92
D229V4, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP29 MUTATED        3      4      9
  USP29 WILD-TYPE     86    156    129
D229V5, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP29 MUTATED        8      6      2
  USP29 WILD-TYPE    174    127     70
D229V6, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP29 MUTATED        2      6      5      9
  USP29 WILD-TYPE    110     90     87    177
D229V7, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP29 MUTATED        3      2      5      3      1      1      7
  USP29 WILD-TYPE     57     48     44     37     62    124     92
D229V8, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP29 MUTATED        6      3      1     11
  USP29 WILD-TYPE    124     75     67    185
D229V9, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP29 MUTATED        2      4      2      2      7      1      1      1
  USP29 WILD-TYPE     38     58     26     78     62     47     42     27
                 vv
clus              CLUS_9
  USP29 MUTATED        1
  USP29 WILD-TYPE     73
D229V10, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP29 MUTATED        0      0      1      3
  USP29 WILD-TYPE     33     31     26     16
D229V11, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP29 MUTATED        3      0      1      0
  USP29 WILD-TYPE     51     10     23     22
D229V12, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(230) Variable = USP34 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP34 MUTATED        4      1      3      2
  USP34 WILD-TYPE     42     57     61     41
D230V1, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             3              61
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP34 MUTATED        5      3      2
  USP34 WILD-TYPE     46     80     75
D230V2, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP34 MUTATED       31     12      2      1
  USP34 WILD-TYPE    147    171     99     19
D230V3, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1            31             147
  CLUS_2            12             171
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP34 MUTATED       11      7     20
  USP34 WILD-TYPE     76     73     80
D230V4, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             7              73
  CLUS_3            20              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP34 MUTATED        5     14     22
  USP34 WILD-TYPE     84    146    116
D230V5, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            14             146
  CLUS_3            22             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP34 MUTATED       20     14      7
  USP34 WILD-TYPE    162    119     65
D230V6, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1            20             162
  CLUS_2            14             119
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP34 MUTATED        6     17     15      9
  USP34 WILD-TYPE    106     79     77    177
D230V7, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             6             106
  CLUS_2            17              79
  CLUS_3            15              77
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP34 MUTATED        2      7     19      5      4      4      6
  USP34 WILD-TYPE     58     43     30     35     59    121     93
D230V8, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             7              43
  CLUS_3            19              30
  CLUS_4             5              35
  CLUS_5             4              59
  CLUS_6             4             121
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP34 MUTATED       20      9      5     12
  USP34 WILD-TYPE    110     69     63    184
D230V9, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1            20             110
  CLUS_2             9              69
  CLUS_3             5              63
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP34 MUTATED        4     10      1      3     16      1      6      1
  USP34 WILD-TYPE     36     52     27     77     53     47     37     27
                 vv
clus              CLUS_9
  USP34 MUTATED        4
  USP34 WILD-TYPE     70
D230V10, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             4              36
  CLUS_2            10              52
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5            16              53
  CLUS_6             1              47
  CLUS_7             6              37
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP34 MUTATED        3      3      1      9
  USP34 WILD-TYPE     30     28     26     10
D230V11, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             9              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP34 MUTATED        8      1      5      2
  USP34 WILD-TYPE     46      9     19     20
D230V12, multiclass
        clus
vv       USP34 MUTATED USP34 WILD-TYPE
  CLUS_1             8              46
  CLUS_2             1               9
  CLUS_3             5              19
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(231) Variable = F8 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        5      1      0      5
  F8 WILD-TYPE     41     57     64     38
D231V1, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          5           41
  CLUS_2          1           57
  CLUS_3          0           64
  CLUS_4          5           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        6      3      2
  F8 WILD-TYPE     45     80     75
D231V2, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           45
  CLUS_2          3           80
  CLUS_3          2           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED       29      7      5      0
  F8 WILD-TYPE    149    176     96     20
D231V3, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         29          149
  CLUS_2          7          176
  CLUS_3          5           96
  CLUS_4          0           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED       14      4     11
  F8 WILD-TYPE     73     76     89
D231V4, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         14           73
  CLUS_2          4           76
  CLUS_3         11           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED        4     15     15
  F8 WILD-TYPE     85    145    123
D231V5, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           85
  CLUS_2         15          145
  CLUS_3         15          123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED       18     10      6
  F8 WILD-TYPE    164    123     66
D231V6, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         18          164
  CLUS_2         10          123
  CLUS_3          6           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        6     13     10     12
  F8 WILD-TYPE    106     83     82    174
D231V7, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6          106
  CLUS_2         13           83
  CLUS_3         10           82
  CLUS_4         12          174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F8 MUTATED        5      3     14      2      6      2      9
  F8 WILD-TYPE     55     47     35     38     57    123     90
D231V8, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          5           55
  CLUS_2          3           47
  CLUS_3         14           35
  CLUS_4          2           38
  CLUS_5          6           57
  CLUS_6          2          123
  CLUS_7          9           90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED       15      9      1     15
  F8 WILD-TYPE    115     69     67    181
D231V9, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         15          115
  CLUS_2          9           69
  CLUS_3          1           67
  CLUS_4         15          181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  F8 MUTATED        4      8      4      6     13      1      2      0      2
  F8 WILD-TYPE     36     54     24     74     56     47     41     28     72
D231V10, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           36
  CLUS_2          8           54
  CLUS_3          4           24
  CLUS_4          6           74
  CLUS_5         13           56
  CLUS_6          1           47
  CLUS_7          2           41
  CLUS_8          0           28
  CLUS_9          2           72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        2      2      0      5
  F8 WILD-TYPE     31     29     27     14
D231V11, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2           31
  CLUS_2          2           29
  CLUS_3          0           27
  CLUS_4          5           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        6      0      3      0
  F8 WILD-TYPE     48     10     21     22
D231V12, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           48
  CLUS_2          0           10
  CLUS_3          3           21
  CLUS_4          0           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(232) Variable = SMTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        2      0      0      0
  SMTN WILD-TYPE     44     58     64     43
D232V1, multiclass
[1] "Remove cluster labels:" "SMTN MUTATED"          
clus
  SMTN MUTATED SMTN WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00D 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AY-4071 
"SMTN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMTN MUTATED        2      0      0
  SMTN WILD-TYPE     49     83     77
D232V2, multiclass
[1] "Remove cluster labels:" "SMTN MUTATED"          
clus
  SMTN MUTATED SMTN WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00D 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" "SMTN WILD-TYPE" 
    TCGA-AY-4071 
"SMTN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED       15      1      0      0
  SMTN WILD-TYPE    163    182    101     20
D232V3, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1           15            163
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMTN MUTATED        8      0      5
  SMTN WILD-TYPE     79     80     95
D232V4, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            8             79
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMTN MUTATED        2      3     10
  SMTN WILD-TYPE     87    157    128
D232V5, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMTN MUTATED       11      3      1
  SMTN WILD-TYPE    171    130     71
D232V6, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1           11            171
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        0      5      8      3
  SMTN WILD-TYPE    112     91     84    183
D232V7, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            8             84
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMTN MUTATED        0      1     10      1      1      0      3
  SMTN WILD-TYPE     60     49     39     39     62    125     96
D232V8, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3           10             39
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        4      4      1      6
  SMTN WILD-TYPE    126     74     67    190
D232V9, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            4            126
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMTN MUTATED        2      5      1      1      5      0      1      0      0
  SMTN WILD-TYPE     38     57     27     79     64     48     42     28     74
D232V10, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        2      0      0      2
  SMTN WILD-TYPE     31     31     27     17
D232V11, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        3      0      1      0
  SMTN WILD-TYPE     51     10     23     22
D232V12, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(233) Variable = CARD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD11 MUTATED        3      1      3      2
  CARD11 WILD-TYPE     43     57     61     41
D233V1, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              3               61
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CARD11 MUTATED        4      2      3
  CARD11 WILD-TYPE     47     81     74
D233V2, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD11 MUTATED       22     15      8      3
  CARD11 WILD-TYPE    156    168     93     17
D233V3, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1             22              156
  CLUS_2             15              168
  CLUS_3              8               93
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CARD11 MUTATED       12     11     16
  CARD11 WILD-TYPE     75     69     84
D233V4, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1             12               75
  CLUS_2             11               69
  CLUS_3             16               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CARD11 MUTATED        7     20     15
  CARD11 WILD-TYPE     82    140    123
D233V5, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1              7               82
  CLUS_2             20              140
  CLUS_3             15              123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CARD11 MUTATED       20     16      6
  CARD11 WILD-TYPE    162    117     66
D233V6, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1             20              162
  CLUS_2             16              117
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD11 MUTATED       15     14     11      9
  CARD11 WILD-TYPE     97     82     81    177
D233V7, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1             15               97
  CLUS_2             14               82
  CLUS_3             11               81
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CARD11 MUTATED       14      7      5      4      8      3      8
  CARD11 WILD-TYPE     46     43     44     36     55    122     91
D233V8, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1             14               46
  CLUS_2              7               43
  CLUS_3              5               44
  CLUS_4              4               36
  CLUS_5              8               55
  CLUS_6              3              122
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD11 MUTATED       20     12      6     10
  CARD11 WILD-TYPE    110     66     62    186
D233V9, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1             20              110
  CLUS_2             12               66
  CLUS_3              6               62
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CARD11 MUTATED        9      6      3      9      7      4      5      1
  CARD11 WILD-TYPE     31     56     25     71     62     44     38     27
                  vv
clus               CLUS_9
  CARD11 MUTATED        4
  CARD11 WILD-TYPE     70
D233V10, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1              9               31
  CLUS_2              6               56
  CLUS_3              3               25
  CLUS_4              9               71
  CLUS_5              7               62
  CLUS_6              4               44
  CLUS_7              5               38
  CLUS_8              1               27
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD11 MUTATED        2      3      2      1
  CARD11 WILD-TYPE     31     28     25     18
D233V11, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              3               28
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD11 MUTATED        5      0      2      1
  CARD11 WILD-TYPE     49     10     22     21
D233V12, multiclass
        clus
vv       CARD11 MUTATED CARD11 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(234) Variable = NUP188 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP188 MUTATED        2      0      1      4
  NUP188 WILD-TYPE     44     58     63     39
D234V1, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP188 MUTATED        2      3      2
  NUP188 WILD-TYPE     49     80     75
D234V2, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP188 MUTATED       15      3      5      0
  NUP188 WILD-TYPE    163    180     96     20
D234V3, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              3              180
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP188 MUTATED        6      4      6
  NUP188 WILD-TYPE     81     76     94
D234V4, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP188 MUTATED        5      6      8
  NUP188 WILD-TYPE     84    154    130
D234V5, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              6              154
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP188 MUTATED        9      8      2
  NUP188 WILD-TYPE    173    125     70
D234V6, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              8              125
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP188 MUTATED        4      6      6      7
  NUP188 WILD-TYPE    108     90     86    179
D234V7, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              6               90
  CLUS_3              6               86
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP188 MUTATED        2      2      7      2      3      2      5
  NUP188 WILD-TYPE     58     48     42     38     60    123     94
D234V8, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP188 MUTATED        8      5      0      8
  NUP188 WILD-TYPE    122     73     68    188
D234V9, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP188 MUTATED        3      6      2      2      5      0      0      0
  NUP188 WILD-TYPE     37     56     26     78     64     48     43     28
                  vv
clus               CLUS_9
  NUP188 MUTATED        3
  NUP188 WILD-TYPE     71
D234V10, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              6               56
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP188 MUTATED        0      4      0      4
  NUP188 WILD-TYPE     33     27     27     15
D234V11, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              4               27
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP188 MUTATED        5      1      2      0
  NUP188 WILD-TYPE     49      9     22     22
D234V12, multiclass
        clus
vv       NUP188 MUTATED NUP188 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(235) Variable = PTPN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        1      1      0      3
  PTPN3 WILD-TYPE     45     57     64     40
D235V1, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN3 MUTATED        2      3      0
  PTPN3 WILD-TYPE     49     80     77
D235V2, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED       10      4      1      1
  PTPN3 WILD-TYPE    168    179    100     19
D235V3, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN3 MUTATED        3      3      5
  PTPN3 WILD-TYPE     84     77     95
D235V4, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN3 MUTATED        1      6      5
  PTPN3 WILD-TYPE     88    154    133
D235V5, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN3 MUTATED        6      6      0
  PTPN3 WILD-TYPE    176    127     72
D235V6, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        4      5      2      5
  PTPN3 WILD-TYPE    108     91     90    181
D235V7, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN3 MUTATED        2      3      4      2      0      2      3
  PTPN3 WILD-TYPE     58     47     45     38     63    123     96
D235V8, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED       10      1      0      4
  PTPN3 WILD-TYPE    120     77     68    192
D235V9, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPN3 MUTATED        3      2      1      3      3      3      0      0
  PTPN3 WILD-TYPE     37     60     27     77     66     45     43     28
                 vv
clus              CLUS_9
  PTPN3 MUTATED        0
  PTPN3 WILD-TYPE     74
D235V10, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             3              45
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        0      0      1      2
  PTPN3 WILD-TYPE     33     31     26     17
D235V11, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        1      0      1      1
  PTPN3 WILD-TYPE     53     10     23     21
D235V12, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(236) Variable = NBEA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED        4      2      2      6
  NBEA WILD-TYPE     42     56     62     37
D236V1, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            4             42
  CLUS_2            2             56
  CLUS_3            2             62
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NBEA MUTATED        4      6      4
  NBEA WILD-TYPE     47     77     73
D236V2, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            4             47
  CLUS_2            6             77
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED       32     14      6      0
  NBEA WILD-TYPE    146    169     95     20
D236V3, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1           32            146
  CLUS_2           14            169
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NBEA MUTATED       14      6     19
  NBEA WILD-TYPE     73     74     81
D236V4, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1           14             73
  CLUS_2            6             74
  CLUS_3           19             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NBEA MUTATED        6     18     22
  NBEA WILD-TYPE     83    142    116
D236V5, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            6             83
  CLUS_2           18            142
  CLUS_3           22            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NBEA MUTATED       21     17      8
  NBEA WILD-TYPE    161    116     64
D236V6, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1           21            161
  CLUS_2           17            116
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED       10     12     17     14
  NBEA WILD-TYPE    102     84     75    172
D236V7, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1           10            102
  CLUS_2           12             84
  CLUS_3           17             75
  CLUS_4           14            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBEA MUTATED        9     11     12      2      5      7      7
  NBEA WILD-TYPE     51     39     37     38     58    118     92
D236V8, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            9             51
  CLUS_2           11             39
  CLUS_3           12             37
  CLUS_4            2             38
  CLUS_5            5             58
  CLUS_6            7            118
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED       21     11      1     17
  NBEA WILD-TYPE    109     67     67    179
D236V9, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1           21            109
  CLUS_2           11             67
  CLUS_3            1             67
  CLUS_4           17            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NBEA MUTATED        7     10      7      5      6      4      4      3      4
  NBEA WILD-TYPE     33     52     21     75     63     44     39     25     70
D236V10, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            7             33
  CLUS_2           10             52
  CLUS_3            7             21
  CLUS_4            5             75
  CLUS_5            6             63
  CLUS_6            4             44
  CLUS_7            4             39
  CLUS_8            3             25
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED        4      2      2      3
  NBEA WILD-TYPE     29     29     25     16
D236V11, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            4             29
  CLUS_2            2             29
  CLUS_3            2             25
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBEA MUTATED        6      1      2      2
  NBEA WILD-TYPE     48      9     22     20
D236V12, multiclass
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  CLUS_1            6             48
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(237) Variable = CNIH4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNIH4 MUTATED        0      0      0      0
  CNIH4 WILD-TYPE     46     58     64     43
D237V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNIH4 MUTATED        0      0      0
  CNIH4 WILD-TYPE     51     83     77
D237V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNIH4 MUTATED        1      2      3      0
  CNIH4 WILD-TYPE    177    181     98     20
D237V3, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNIH4 MUTATED        3      1      2
  CNIH4 WILD-TYPE     84     79     98
D237V4, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNIH4 MUTATED        0      1      4
  CNIH4 WILD-TYPE     89    159    134
D237V5, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNIH4 MUTATED        4      0      1
  CNIH4 WILD-TYPE    178    133     71
D237V6, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNIH4 MUTATED        2      0      4      0
  CNIH4 WILD-TYPE    110     96     88    186
D237V7, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              96
  CLUS_3             4              88
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNIH4 MUTATED        1      0      2      0      3      0      0
  CNIH4 WILD-TYPE     59     50     47     40     60    125     99
D237V8, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNIH4 MUTATED        4      2      0      0
  CNIH4 WILD-TYPE    126     76     68    196
D237V9, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNIH4 MUTATED        1      1      1      2      1      0      0      0
  CNIH4 WILD-TYPE     39     61     27     78     68     48     43     28
                 vv
clus              CLUS_9
  CNIH4 MUTATED        0
  CNIH4 WILD-TYPE     74
D237V10, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNIH4 MUTATED        2      2      0      0
  CNIH4 WILD-TYPE     31     29     27     19
D237V11, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNIH4 MUTATED        3      0      1      0
  CNIH4 WILD-TYPE     51     10     23     22
D237V12, multiclass
        clus
vv       CNIH4 MUTATED CNIH4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(238) Variable = CD58 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        0      0      0      2
  CD58 WILD-TYPE     46     58     64     41
D238V1, multiclass
[1] "Remove cluster labels:" "CD58 MUTATED"          
clus
  CD58 MUTATED CD58 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AY-4071 
"CD58 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD58 MUTATED        0      1      1
  CD58 WILD-TYPE     51     82     76
D238V2, multiclass
[1] "Remove cluster labels:" "CD58 MUTATED"          
clus
  CD58 MUTATED CD58 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" "CD58 WILD-TYPE" 
    TCGA-AY-4071 
"CD58 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED       14      1      0      0
  CD58 WILD-TYPE    164    182    101     20
D238V3, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD58 MUTATED        3      0     10
  CD58 WILD-TYPE     84     80     90
D238V4, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD58 MUTATED        2      6      5
  CD58 WILD-TYPE     87    154    133
D238V5, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD58 MUTATED        7      6      0
  CD58 WILD-TYPE    175    127     72
D238V6, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        0      6      7      2
  CD58 WILD-TYPE    112     90     85    184
D238V7, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            6             90
  CLUS_3            7             85
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD58 MUTATED        1      1     10      1      1      0      1
  CD58 WILD-TYPE     59     49     39     39     62    125     98
D238V8, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3           10             39
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED       10      2      0      3
  CD58 WILD-TYPE    120     76     68    193
D238V9, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CD58 MUTATED        1      5      1      0      5      0      2      0      1
  CD58 WILD-TYPE     39     57     27     80     64     48     41     28     73
D238V10, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        1      0      0      6
  CD58 WILD-TYPE     32     31     27     13
D238V11, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            6             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        5      0      2      0
  CD58 WILD-TYPE     49     10     22     22
D238V12, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(239) Variable = GMCL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMCL1 MUTATED        0      0      0      1
  GMCL1 WILD-TYPE     46     58     64     42
D239V1, multiclass
[1] "Remove cluster labels:" "GMCL1 MUTATED"         
clus
  GMCL1 MUTATED GMCL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GMCL1 MUTATED        0      0      1
  GMCL1 WILD-TYPE     51     83     76
D239V2, multiclass
[1] "Remove cluster labels:" "GMCL1 MUTATED"         
clus
  GMCL1 MUTATED GMCL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GMCL1 WILD-TYPE" "GMCL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMCL1 MUTATED        7      4      3      0
  GMCL1 WILD-TYPE    171    179     98     20
D239V3, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GMCL1 MUTATED        5      4      4
  GMCL1 WILD-TYPE     82     76     96
D239V4, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4              76
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GMCL1 MUTATED        1      4      9
  GMCL1 WILD-TYPE     88    156    129
D239V5, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GMCL1 MUTATED        9      4      1
  GMCL1 WILD-TYPE    173    129     71
D239V6, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMCL1 MUTATED        4      2      7      1
  GMCL1 WILD-TYPE    108     94     85    185
D239V7, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             7              85
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GMCL1 MUTATED        5      2      2      3      2      0      0
  GMCL1 WILD-TYPE     55     48     47     37     61    125     99
D239V8, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMCL1 MUTATED        6      2      3      3
  GMCL1 WILD-TYPE    124     76     65    193
D239V9, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             3              65
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GMCL1 MUTATED        1      4      0      3      2      1      2      0
  GMCL1 WILD-TYPE     39     58     28     77     67     47     41     28
                 vv
clus              CLUS_9
  GMCL1 MUTATED        1
  GMCL1 WILD-TYPE     73
D239V10, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMCL1 MUTATED        2      1      3      2
  GMCL1 WILD-TYPE     31     30     24     17
D239V11, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             3              24
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GMCL1 MUTATED        5      1      1      1
  GMCL1 WILD-TYPE     49      9     23     21
D239V12, multiclass
        clus
vv       GMCL1 MUTATED GMCL1 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(240) Variable = AKAP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP3 MUTATED        1      1      1      4
  AKAP3 WILD-TYPE     45     57     63     39
D240V1, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP3 MUTATED        2      3      2
  AKAP3 WILD-TYPE     49     80     75
D240V2, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP3 MUTATED       15      4      3      1
  AKAP3 WILD-TYPE    163    179     98     19
D240V3, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP3 MUTATED        6      0      9
  AKAP3 WILD-TYPE     81     80     91
D240V4, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP3 MUTATED        7      6      6
  AKAP3 WILD-TYPE     82    154    132
D240V5, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             7              82
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP3 MUTATED        7      6      6
  AKAP3 WILD-TYPE    175    127     66
D240V6, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP3 MUTATED        2     11      3      7
  AKAP3 WILD-TYPE    110     85     89    179
D240V7, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2            11              85
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKAP3 MUTATED        1      6      4      3      2      2      5
  AKAP3 WILD-TYPE     59     44     45     37     61    123     94
D240V8, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             6              44
  CLUS_3             4              45
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP3 MUTATED        8      2      2     10
  AKAP3 WILD-TYPE    122     76     66    186
D240V9, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AKAP3 MUTATED        4      2      3      1      7      0      2      0
  AKAP3 WILD-TYPE     36     60     25     79     62     48     41     28
                 vv
clus              CLUS_9
  AKAP3 MUTATED        3
  AKAP3 WILD-TYPE     71
D240V10, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP3 MUTATED        3      1      0      0
  AKAP3 WILD-TYPE     30     30     27     19
D240V11, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP3 MUTATED        4      0      0      0
  AKAP3 WILD-TYPE     50     10     24     22
D240V12, multiclass
        clus
vv       AKAP3 MUTATED AKAP3 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(241) Variable = RBMX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX2 MUTATED        1      0      0      0
  RBMX2 WILD-TYPE     45     58     64     43
D241V1, multiclass
[1] "Remove cluster labels:" "RBMX2 MUTATED"         
clus
  RBMX2 MUTATED RBMX2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBMX2 MUTATED        1      0      0
  RBMX2 WILD-TYPE     50     83     77
D241V2, multiclass
[1] "Remove cluster labels:" "RBMX2 MUTATED"         
clus
  RBMX2 MUTATED RBMX2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX2 MUTATED        8      3      1      0
  RBMX2 WILD-TYPE    170    180    100     20
D241V3, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBMX2 MUTATED        3      2      6
  RBMX2 WILD-TYPE     84     78     94
D241V4, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBMX2 MUTATED        3      3      6
  RBMX2 WILD-TYPE     86    157    132
D241V5, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBMX2 MUTATED        6      4      2
  RBMX2 WILD-TYPE    176    129     70
D241V6, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX2 MUTATED        2      6      3      1
  RBMX2 WILD-TYPE    110     90     89    185
D241V7, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBMX2 MUTATED        1      2      6      1      1      0      1
  RBMX2 WILD-TYPE     59     48     43     39     62    125     98
D241V8, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX2 MUTATED        4      3      1      4
  RBMX2 WILD-TYPE    126     75     67    192
D241V9, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBMX2 MUTATED        1      2      0      0      5      0      3      0
  RBMX2 WILD-TYPE     39     60     28     80     64     48     40     28
                 vv
clus              CLUS_9
  RBMX2 MUTATED        1
  RBMX2 WILD-TYPE     73
D241V10, multiclass
        clus
vv       RBMX2 MUTATED RBMX2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX2 MUTATED        2      0      0      0
  RBMX2 WILD-TYPE     31     31     27     19
D241V11, multiclass
[1] "Remove cluster labels:" "RBMX2 MUTATED"         
clus
  RBMX2 MUTATED RBMX2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6303      TCGA-G4-6306 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX2 MUTATED        2      0      0      0
  RBMX2 WILD-TYPE     52     10     24     22
D241V12, multiclass
[1] "Remove cluster labels:" "RBMX2 MUTATED"         
clus
  RBMX2 MUTATED RBMX2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6303      TCGA-G4-6306 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" "RBMX2 WILD-TYPE" 

Clustering(242) Variable = DCBLD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCBLD1 MUTATED        1      0      0      0
  DCBLD1 WILD-TYPE     45     58     64     43
D242V1, multiclass
[1] "Remove cluster labels:" "DCBLD1 MUTATED"        
clus
  DCBLD1 MUTATED DCBLD1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DCBLD1 MUTATED        1      0      0
  DCBLD1 WILD-TYPE     50     83     77
D242V2, multiclass
[1] "Remove cluster labels:" "DCBLD1 MUTATED"        
clus
  DCBLD1 MUTATED DCBLD1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"DCBLD1 WILD-TYPE" "DCBLD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCBLD1 MUTATED        4      1      2      0
  DCBLD1 WILD-TYPE    174    182     99     20
D242V3, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DCBLD1 MUTATED        2      2      2
  DCBLD1 WILD-TYPE     85     78     98
D242V4, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DCBLD1 MUTATED        0      2      4
  DCBLD1 WILD-TYPE     89    158    134
D242V5, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DCBLD1 MUTATED        3      2      1
  DCBLD1 WILD-TYPE    179    131     71
D242V6, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCBLD1 MUTATED        3      0      3      1
  DCBLD1 WILD-TYPE    109     96     89    185
D242V7, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               96
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCBLD1 MUTATED        1      1      1      1      2      0      1
  DCBLD1 WILD-TYPE     59     49     48     39     61    125     98
D242V8, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCBLD1 MUTATED        3      3      0      1
  DCBLD1 WILD-TYPE    127     75     68    195
D242V9, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCBLD1 MUTATED        1      3      0      0      1      2      0      0
  DCBLD1 WILD-TYPE     39     59     28     80     68     46     43     28
                  vv
clus               CLUS_9
  DCBLD1 MUTATED        0
  DCBLD1 WILD-TYPE     74
D242V10, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCBLD1 MUTATED        2      2      0      0
  DCBLD1 WILD-TYPE     31     29     27     19
D242V11, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCBLD1 MUTATED        2      1      0      1
  DCBLD1 WILD-TYPE     52      9     24     21
D242V12, multiclass
        clus
vv       DCBLD1 MUTATED DCBLD1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(243) Variable = ZNF280B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280B MUTATED        3      0      0      1
  ZNF280B WILD-TYPE     43     58     64     42
D243V1, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280B MUTATED        2      2      0
  ZNF280B WILD-TYPE     49     81     77
D243V2, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280B MUTATED       10      1      2      0
  ZNF280B WILD-TYPE    168    182     99     20
D243V3, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280B MUTATED        3      2      4
  ZNF280B WILD-TYPE     84     78     96
D243V4, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               3                84
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280B MUTATED        0      4      6
  ZNF280B WILD-TYPE     89    156    132
D243V5, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280B MUTATED        6      1      3
  ZNF280B WILD-TYPE    176    132     69
D243V6, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               6               176
  CLUS_2               1               132
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280B MUTATED        2      2      5      4
  ZNF280B WILD-TYPE    110     94     87    182
D243V7, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               5                87
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF280B MUTATED        2      1      3      1      2      1      3
  ZNF280B WILD-TYPE     58     49     46     39     61    124     96
D243V8, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280B MUTATED        6      3      0      4
  ZNF280B WILD-TYPE    124     75     68    192
D243V9, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               6               124
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF280B MUTATED        1      2      2      2      3      2      0      1
  ZNF280B WILD-TYPE     39     60     26     78     66     46     43     27
                   vv
clus                CLUS_9
  ZNF280B MUTATED        0
  ZNF280B WILD-TYPE     74
D243V10, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280B MUTATED        1      1      0      1
  ZNF280B WILD-TYPE     32     30     27     18
D243V11, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280B MUTATED        3      0      0      0
  ZNF280B WILD-TYPE     51     10     24     22
D243V12, multiclass
        clus
vv       ZNF280B MUTATED ZNF280B WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(244) Variable = NCOA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        1      0      0      3
  NCOA7 WILD-TYPE     45     58     64     40
D244V1, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED        3      0      1
  NCOA7 WILD-TYPE     48     83     76
D244V2, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED       11      3      3      0
  NCOA7 WILD-TYPE    167    180     98     20
D244V3, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED        5      2      6
  NCOA7 WILD-TYPE     82     78     94
D244V4, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED        2      5      8
  NCOA7 WILD-TYPE     87    155    130
D244V5, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED       10      4      1
  NCOA7 WILD-TYPE    172    129     71
D244V6, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        2      5      6      4
  NCOA7 WILD-TYPE    110     91     86    182
D244V7, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             6              86
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOA7 MUTATED        2      3      7      0      2      0      3
  NCOA7 WILD-TYPE     58     47     42     40     61    125     96
D244V8, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        8      2      2      5
  NCOA7 WILD-TYPE    122     76     66    191
D244V9, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NCOA7 MUTATED        2      5      1      1      5      0      3      0
  NCOA7 WILD-TYPE     38     57     27     79     64     48     40     28
                 vv
clus              CLUS_9
  NCOA7 MUTATED        0
  NCOA7 WILD-TYPE     74
D244V10, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        1      1      1      2
  NCOA7 WILD-TYPE     32     30     26     17
D244V11, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        3      0      2      0
  NCOA7 WILD-TYPE     51     10     22     22
D244V12, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(245) Variable = DENND4A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4A MUTATED        5      1      0      5
  DENND4A WILD-TYPE     41     57     64     38
D245V1, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND4A MUTATED        6      3      2
  DENND4A WILD-TYPE     45     80     75
D245V2, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               6                45
  CLUS_2               3                80
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4A MUTATED       18      5      2      1
  DENND4A WILD-TYPE    160    178     99     19
D245V3, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1              18               160
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND4A MUTATED        5      2      8
  DENND4A WILD-TYPE     82     78     92
D245V4, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND4A MUTATED        4      7     11
  DENND4A WILD-TYPE     85    153    127
D245V5, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               4                85
  CLUS_2               7               153
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND4A MUTATED        7     11      4
  DENND4A WILD-TYPE    175    122     68
D245V6, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               7               175
  CLUS_2              11               122
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4A MUTATED        3      9      3     11
  DENND4A WILD-TYPE    109     87     89    175
D245V7, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               3               109
  CLUS_2               9                87
  CLUS_3               3                89
  CLUS_4              11               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DENND4A MUTATED        2      3      7      2      2      2      8
  DENND4A WILD-TYPE     58     47     42     38     61    123     91
D245V8, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               7                42
  CLUS_4               2                38
  CLUS_5               2                61
  CLUS_6               2               123
  CLUS_7               8                91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4A MUTATED       11      3      1     10
  DENND4A WILD-TYPE    119     75     67    186
D245V9, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1              11               119
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4              10               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DENND4A MUTATED        4      3      3      2      9      1      1      1
  DENND4A WILD-TYPE     36     59     25     78     60     47     42     27
                   vv
clus                CLUS_9
  DENND4A MUTATED        1
  DENND4A WILD-TYPE     73
D245V10, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               4                36
  CLUS_2               3                59
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               9                60
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4A MUTATED        2      2      0      1
  DENND4A WILD-TYPE     31     29     27     18
D245V11, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4A MUTATED        3      1      1      0
  DENND4A WILD-TYPE     51      9     23     22
D245V12, multiclass
        clus
vv       DENND4A MUTATED DENND4A WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(246) Variable = ALDH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        0      0      0      2
  ALDH2 WILD-TYPE     46     58     64     41
D246V1, multiclass
[1] "Remove cluster labels:" "ALDH2 MUTATED"         
clus
  ALDH2 MUTATED ALDH2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AY-4071 
"ALDH2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        2      0      0
  ALDH2 WILD-TYPE     49     83     77
D246V2, multiclass
[1] "Remove cluster labels:" "ALDH2 MUTATED"         
clus
  ALDH2 MUTATED ALDH2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" "ALDH2 WILD-TYPE" 
     TCGA-AY-4071 
"ALDH2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        7      2      2      1
  ALDH2 WILD-TYPE    171    181     99     19
D246V3, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        3      2      4
  ALDH2 WILD-TYPE     84     78     96
D246V4, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        3      3      3
  ALDH2 WILD-TYPE     86    157    135
D246V5, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        5      4      0
  ALDH2 WILD-TYPE    177    129     72
D246V6, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        2      5      2      3
  ALDH2 WILD-TYPE    110     91     90    183
D246V7, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALDH2 MUTATED        1      3      3      0      2      0      3
  ALDH2 WILD-TYPE     59     47     46     40     61    125     96
D246V8, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        5      2      1      4
  ALDH2 WILD-TYPE    125     76     67    192
D246V9, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALDH2 MUTATED        1      1      3      1      4      0      2      0
  ALDH2 WILD-TYPE     39     61     25     79     65     48     41     28
                 vv
clus              CLUS_9
  ALDH2 MUTATED        0
  ALDH2 WILD-TYPE     74
D246V10, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        1      0      1      1
  ALDH2 WILD-TYPE     32     31     26     18
D246V11, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        1      0      2      0
  ALDH2 WILD-TYPE     53     10     22     22
D246V12, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(247) Variable = CCDC160 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC160 MUTATED        2      0      1      2
  CCDC160 WILD-TYPE     44     58     63     41
D247V1, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC160 MUTATED        1      3      1
  CCDC160 WILD-TYPE     50     80     76
D247V2, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC160 MUTATED       10      1      0      0
  CCDC160 WILD-TYPE    168    182    101     20
D247V3, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC160 MUTATED        0      0      5
  CCDC160 WILD-TYPE     87     80     95
D247V4, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC160 MUTATED        1      3      6
  CCDC160 WILD-TYPE     88    157    132
D247V5, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC160 MUTATED        4      5      1
  CCDC160 WILD-TYPE    178    128     71
D247V6, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC160 MUTATED        0      4      1      6
  CCDC160 WILD-TYPE    112     92     91    180
D247V7, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               1                91
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC160 MUTATED        1      1      4      0      0      2      3
  CCDC160 WILD-TYPE     59     49     45     40     63    123     96
D247V8, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC160 MUTATED        3      0      0      8
  CCDC160 WILD-TYPE    127     78     68    188
D247V9, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC160 MUTATED        1      0      1      1      4      0      2      1
  CCDC160 WILD-TYPE     39     62     27     79     65     48     41     27
                   vv
clus                CLUS_9
  CCDC160 MUTATED        1
  CCDC160 WILD-TYPE     73
D247V10, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC160 MUTATED        0      0      0      2
  CCDC160 WILD-TYPE     33     31     27     17
D247V11, multiclass
[1] "Remove cluster labels:" "CCDC160 MUTATED"       
clus
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC160 MUTATED        1      0      1      0
  CCDC160 WILD-TYPE     53     10     23     22
D247V12, multiclass
[1] "Remove cluster labels:" "CCDC160 MUTATED"       
clus
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 

Clustering(248) Variable = EFTUD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFTUD2 MUTATED        3      1      1      1
  EFTUD2 WILD-TYPE     43     57     63     42
D248V1, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFTUD2 MUTATED        3      2      1
  EFTUD2 WILD-TYPE     48     81     76
D248V2, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFTUD2 MUTATED       11      4      2      0
  EFTUD2 WILD-TYPE    167    179     99     20
D248V3, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFTUD2 MUTATED        5      2      4
  EFTUD2 WILD-TYPE     82     78     96
D248V4, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFTUD2 MUTATED        2      6      4
  EFTUD2 WILD-TYPE     87    154    134
D248V5, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFTUD2 MUTATED        2      7      3
  EFTUD2 WILD-TYPE    180    126     69
D248V6, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              7              126
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFTUD2 MUTATED        4      2      4      7
  EFTUD2 WILD-TYPE    108     94     88    179
D248V7, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFTUD2 MUTATED        3      1      5      0      1      2      5
  EFTUD2 WILD-TYPE     57     49     44     40     62    123     94
D248V8, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFTUD2 MUTATED        3      3      3      8
  EFTUD2 WILD-TYPE    127     75     65    188
D248V9, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              3               65
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFTUD2 MUTATED        0      2      1      4      5      2      2      0
  EFTUD2 WILD-TYPE     40     60     27     76     64     46     41     28
                  vv
clus               CLUS_9
  EFTUD2 MUTATED        1
  EFTUD2 WILD-TYPE     73
D248V10, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              5               64
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFTUD2 MUTATED        5      0      1      1
  EFTUD2 WILD-TYPE     28     31     26     18
D248V11, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFTUD2 MUTATED        3      0      2      2
  EFTUD2 WILD-TYPE     51     10     22     20
D248V12, multiclass
        clus
vv       EFTUD2 MUTATED EFTUD2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(249) Variable = STBD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STBD1 MUTATED        0      0      2      0
  STBD1 WILD-TYPE     46     58     62     43
D249V1, multiclass
[1] "Remove cluster labels:" "STBD1 MUTATED"         
clus
  STBD1 MUTATED STBD1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3679 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3594      TCGA-AG-3598 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AY-4071 
"STBD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STBD1 MUTATED        0      0      2
  STBD1 WILD-TYPE     51     83     75
D249V2, multiclass
[1] "Remove cluster labels:" "STBD1 MUTATED"         
clus
  STBD1 MUTATED STBD1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3679 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3594      TCGA-AG-3598 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" "STBD1 WILD-TYPE" 
     TCGA-AY-4071 
"STBD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STBD1 MUTATED        1      2      4      0
  STBD1 WILD-TYPE    177    181     97     20
D249V3, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STBD1 MUTATED        2      2      1
  STBD1 WILD-TYPE     85     78     99
D249V4, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STBD1 MUTATED        1      3      2
  STBD1 WILD-TYPE     88    157    136
D249V5, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STBD1 MUTATED        2      2      2
  STBD1 WILD-TYPE    180    131     70
D249V6, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STBD1 MUTATED        3      1      2      1
  STBD1 WILD-TYPE    109     95     90    185
D249V7, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STBD1 MUTATED        3      1      1      0      0      2      0
  STBD1 WILD-TYPE     57     49     48     40     63    123     99
D249V8, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STBD1 MUTATED        4      0      1      2
  STBD1 WILD-TYPE    126     78     67    194
D249V9, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STBD1 MUTATED        1      1      1      2      0      2      0      0
  STBD1 WILD-TYPE     39     61     27     78     69     46     43     28
                 vv
clus              CLUS_9
  STBD1 MUTATED        0
  STBD1 WILD-TYPE     74
D249V10, multiclass
        clus
vv       STBD1 MUTATED STBD1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             0              69
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STBD1 MUTATED        0      0      0      0
  STBD1 WILD-TYPE     33     31     27     19
D249V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STBD1 MUTATED        0      0      0      0
  STBD1 WILD-TYPE     54     10     24     22
D249V12, multiclass

Clustering(250) Variable = TCF7L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7L2 MUTATED        3      3      5      3
  TCF7L2 WILD-TYPE     43     55     59     40
D250V1, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              3               55
  CLUS_3              5               59
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCF7L2 MUTATED        2      7      5
  TCF7L2 WILD-TYPE     49     76     72
D250V2, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              7               76
  CLUS_3              5               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7L2 MUTATED       19      9      3      4
  TCF7L2 WILD-TYPE    159    174     98     16
D250V3, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              9              174
  CLUS_3              3               98
  CLUS_4              4               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCF7L2 MUTATED        9      5      5
  TCF7L2 WILD-TYPE     78     75     95
D250V4, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              5               75
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCF7L2 MUTATED        6      6     13
  TCF7L2 WILD-TYPE     83    154    125
D250V5, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              6              154
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCF7L2 MUTATED       14      8      3
  TCF7L2 WILD-TYPE    168    125     69
D250V6, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1             14              168
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7L2 MUTATED        5      9      7     13
  TCF7L2 WILD-TYPE    107     87     85    173
D250V7, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              9               87
  CLUS_3              7               85
  CLUS_4             13              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCF7L2 MUTATED        2      1      7      5      4      8      7
  TCF7L2 WILD-TYPE     58     49     42     35     59    117     92
D250V8, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              7               42
  CLUS_4              5               35
  CLUS_5              4               59
  CLUS_6              8              117
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7L2 MUTATED        9      4      5     14
  TCF7L2 WILD-TYPE    121     74     63    182
D250V9, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              5               63
  CLUS_4             14              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TCF7L2 MUTATED        4      7      2      2      4      4      3      1
  TCF7L2 WILD-TYPE     36     55     26     78     65     44     40     27
                  vv
clus               CLUS_9
  TCF7L2 MUTATED        5
  TCF7L2 WILD-TYPE     69
D250V10, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              7               55
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              4               44
  CLUS_7              3               40
  CLUS_8              1               27
  CLUS_9              5               69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7L2 MUTATED        3      1      5      1
  TCF7L2 WILD-TYPE     30     30     22     18
D250V11, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              5               22
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7L2 MUTATED        2      3      2      3
  TCF7L2 WILD-TYPE     52      7     22     19
D250V12, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              3                7
  CLUS_3              2               22
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(251) Variable = C17ORF47 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF47 MUTATED        1      0      0      2
  C17ORF47 WILD-TYPE     45     58     64     41
D251V1, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF47 MUTATED        1      1      1
  C17ORF47 WILD-TYPE     50     82     76
D251V2, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF47 MUTATED        3      1      3      0
  C17ORF47 WILD-TYPE    175    182     98     20
D251V3, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                1                182
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF47 MUTATED        2      2      0
  C17ORF47 WILD-TYPE     85     78    100
D251V4, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                2                 78
  CLUS_3                0                100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF47 MUTATED        1      3      3
  C17ORF47 WILD-TYPE     88    157    135
D251V5, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF47 MUTATED        3      3      1
  C17ORF47 WILD-TYPE    179    130     71
D251V6, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF47 MUTATED        2      1      1      3
  C17ORF47 WILD-TYPE    110     95     91    183
D251V7, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C17ORF47 MUTATED        3      0      0      1      1      0      2
  C17ORF47 WILD-TYPE     57     50     49     39     62    125     97
D251V8, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                0                 50
  CLUS_3                0                 49
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF47 MUTATED        2      2      0      3
  C17ORF47 WILD-TYPE    128     76     68    193
D251V9, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C17ORF47 MUTATED        0      2      1      2      1      0      0      1
  C17ORF47 WILD-TYPE     40     60     27     78     68     48     43     27
                    vv
clus                 CLUS_9
  C17ORF47 MUTATED        0
  C17ORF47 WILD-TYPE     74
D251V10, multiclass
        clus
vv       C17ORF47 MUTATED C17ORF47 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF47 MUTATED        0      1      0      0
  C17ORF47 WILD-TYPE     33     30     27     19
D251V11, multiclass
[1] "Remove cluster labels:" "C17ORF47 MUTATED"      
clus
  C17ORF47 MUTATED C17ORF47 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6651 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-G5-6641 
"C17ORF47 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF47 MUTATED        1      0      0      0
  C17ORF47 WILD-TYPE     53     10     24     22
D251V12, multiclass
[1] "Remove cluster labels:" "C17ORF47 MUTATED"      
clus
  C17ORF47 MUTATED C17ORF47 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6651 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" "C17ORF47 WILD-TYPE" 
        TCGA-G5-6641 
"C17ORF47 WILD-TYPE" 

Clustering(252) Variable = TOP2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        2      0      0      2
  TOP2A WILD-TYPE     44     58     64     41
D252V1, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2A MUTATED        1      1      2
  TOP2A WILD-TYPE     50     82     75
D252V2, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED       16      2      1      1
  TOP2A WILD-TYPE    162    181    100     19
D252V3, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1            16             162
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2A MUTATED        5      2      9
  TOP2A WILD-TYPE     82     78     91
D252V4, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2A MUTATED        2      6      6
  TOP2A WILD-TYPE     87    154    132
D252V5, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2A MUTATED        7      6      1
  TOP2A WILD-TYPE    175    127     71
D252V6, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        2      8      5      5
  TOP2A WILD-TYPE    110     88     87    181
D252V7, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOP2A MUTATED        1      3      9      3      0      1      3
  TOP2A WILD-TYPE     59     47     40     37     63    124     96
D252V8, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED       12      2      1      5
  TOP2A WILD-TYPE    118     76     67    191
D252V9, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1            12             118
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TOP2A MUTATED        5      3      1      2      5      0      2      1
  TOP2A WILD-TYPE     35     59     27     78     64     48     41     27
                 vv
clus              CLUS_9
  TOP2A MUTATED        1
  TOP2A WILD-TYPE     73
D252V10, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             5              35
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        0      0      1      2
  TOP2A WILD-TYPE     33     31     26     17
D252V11, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        2      0      1      0
  TOP2A WILD-TYPE     52     10     23     22
D252V12, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(253) Variable = MIER3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER3 MUTATED        5      0      0      5
  MIER3 WILD-TYPE     41     58     64     38
D253V1, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER3 MUTATED        7      2      1
  MIER3 WILD-TYPE     44     81     76
D253V2, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER3 MUTATED       14      0      0      0
  MIER3 WILD-TYPE    164    183    101     20
D253V3, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER3 MUTATED        1      0      2
  MIER3 WILD-TYPE     86     80     98
D253V4, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER3 MUTATED        3      6      2
  MIER3 WILD-TYPE     86    154    136
D253V5, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER3 MUTATED        3      5      3
  MIER3 WILD-TYPE    179    128     69
D253V6, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER3 MUTATED        1      2      1     10
  MIER3 WILD-TYPE    111     94     91    176
D253V7, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIER3 MUTATED        1      1      3      0      0      1      8
  MIER3 WILD-TYPE     59     49     46     40     63    124     91
D253V8, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER3 MUTATED        3      0      0     11
  MIER3 WILD-TYPE    127     78     68    185
D253V9, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MIER3 MUTATED        1      2      1      1      8      0      0      1
  MIER3 WILD-TYPE     39     60     27     79     61     48     43     27
                 vv
clus              CLUS_9
  MIER3 MUTATED        0
  MIER3 WILD-TYPE     74
D253V10, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER3 MUTATED        0      0      0      0
  MIER3 WILD-TYPE     33     31     27     19
D253V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER3 MUTATED        0      0      0      0
  MIER3 WILD-TYPE     54     10     24     22
D253V12, multiclass

Clustering(254) Variable = FBXO21 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        2      0      1      2
  FBXO21 WILD-TYPE     44     58     63     41
D254V1, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        2      0      3
  FBXO21 WILD-TYPE     49     83     74
D254V2, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        7      1      1      0
  FBXO21 WILD-TYPE    171    182    100     20
D254V3, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        1      0      3
  FBXO21 WILD-TYPE     86     80     97
D254V4, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        0      3      4
  FBXO21 WILD-TYPE     89    157    134
D254V5, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        3      4      0
  FBXO21 WILD-TYPE    179    129     72
D254V6, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        0      3      1      5
  FBXO21 WILD-TYPE    112     93     91    181
D254V7, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXO21 MUTATED        1      0      4      0      0      0      4
  FBXO21 WILD-TYPE     59     50     45     40     63    125     95
D254V8, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        3      1      0      5
  FBXO21 WILD-TYPE    127     77     68    191
D254V9, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXO21 MUTATED        0      1      1      1      5      0      0      1
  FBXO21 WILD-TYPE     40     61     27     79     64     48     43     27
                  vv
clus               CLUS_9
  FBXO21 MUTATED        0
  FBXO21 WILD-TYPE     74
D254V10, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        0      0      0      1
  FBXO21 WILD-TYPE     33     31     27     18
D254V11, multiclass
[1] "Remove cluster labels:" "FBXO21 MUTATED"        
clus
  FBXO21 MUTATED FBXO21 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-G5-6641 
"FBXO21 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        0      0      1      0
  FBXO21 WILD-TYPE     54     10     23     22
D254V12, multiclass
[1] "Remove cluster labels:" "FBXO21 MUTATED"        
clus
  FBXO21 MUTATED FBXO21 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" "FBXO21 WILD-TYPE" 
      TCGA-G5-6641 
"FBXO21 WILD-TYPE" 

Clustering(255) Variable = CYP1B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP1B1 MUTATED        2      0      0      2
  CYP1B1 WILD-TYPE     44     58     64     41
D255V1, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP1B1 MUTATED        1      1      2
  CYP1B1 WILD-TYPE     50     82     75
D255V2, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP1B1 MUTATED        7      3      1      0
  CYP1B1 WILD-TYPE    171    180    100     20
D255V3, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP1B1 MUTATED        3      2      3
  CYP1B1 WILD-TYPE     84     78     97
D255V4, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP1B1 MUTATED        2      4      5
  CYP1B1 WILD-TYPE     87    156    133
D255V5, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP1B1 MUTATED        6      3      2
  CYP1B1 WILD-TYPE    176    130     70
D255V6, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP1B1 MUTATED        2      4      3      3
  CYP1B1 WILD-TYPE    110     92     89    183
D255V7, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP1B1 MUTATED        2      0      3      0      4      1      2
  CYP1B1 WILD-TYPE     58     50     46     40     59    124     97
D255V8, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP1B1 MUTATED        4      3      0      5
  CYP1B1 WILD-TYPE    126     75     68    191
D255V9, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP1B1 MUTATED        1      3      1      2      3      1      1      0
  CYP1B1 WILD-TYPE     39     59     27     78     66     47     42     28
                  vv
clus               CLUS_9
  CYP1B1 MUTATED        0
  CYP1B1 WILD-TYPE     74
D255V10, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP1B1 MUTATED        0      2      0      1
  CYP1B1 WILD-TYPE     33     29     27     18
D255V11, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP1B1 MUTATED        1      1      0      1
  CYP1B1 WILD-TYPE     53      9     24     21
D255V12, multiclass
        clus
vv       CYP1B1 MUTATED CYP1B1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(256) Variable = MSH6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED        6      1      1      5
  MSH6 WILD-TYPE     40     57     63     38
D256V1, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED        8      3      2
  MSH6 WILD-TYPE     43     80     75
D256V2, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            8             43
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED       23      8     12      2
  MSH6 WILD-TYPE    155    175     89     18
D256V3, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           23            155
  CLUS_2            8            175
  CLUS_3           12             89
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED       14      7     12
  MSH6 WILD-TYPE     73     73     88
D256V4, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           14             73
  CLUS_2            7             73
  CLUS_3           12             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED        5      9     17
  MSH6 WILD-TYPE     84    151    121
D256V5, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            9            151
  CLUS_3           17            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED       14      7     10
  MSH6 WILD-TYPE    168    126     62
D256V6, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           14            168
  CLUS_2            7            126
  CLUS_3           10             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED       15     12      6     12
  MSH6 WILD-TYPE     97     84     86    174
D256V7, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           15             97
  CLUS_2           12             84
  CLUS_3            6             86
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MSH6 MUTATED        8      8      6      5      6      2     10
  MSH6 WILD-TYPE     52     42     43     35     57    123     89
D256V8, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            8             52
  CLUS_2            8             42
  CLUS_3            6             43
  CLUS_4            5             35
  CLUS_5            6             57
  CLUS_6            2            123
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED       25      5      3     11
  MSH6 WILD-TYPE    105     73     65    185
D256V9, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           25            105
  CLUS_2            5             73
  CLUS_3            3             65
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MSH6 MUTATED        8      6      6      7      9      3      2      1      2
  MSH6 WILD-TYPE     32     56     22     73     60     45     41     27     72
D256V10, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            8             32
  CLUS_2            6             56
  CLUS_3            6             22
  CLUS_4            7             73
  CLUS_5            9             60
  CLUS_6            3             45
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED        2      2      1      3
  MSH6 WILD-TYPE     31     29     26     16
D256V11, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED        5      0      1      2
  MSH6 WILD-TYPE     49     10     23     20
D256V12, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(257) Variable = MMP8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP8 MUTATED        0      0      0      1
  MMP8 WILD-TYPE     46     58     64     42
D257V1, multiclass
[1] "Remove cluster labels:" "MMP8 MUTATED"          
clus
  MMP8 MUTATED MMP8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP8 MUTATED        0      1      0
  MMP8 WILD-TYPE     51     82     77
D257V2, multiclass
[1] "Remove cluster labels:" "MMP8 MUTATED"          
clus
  MMP8 MUTATED MMP8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP8 MUTATED        9      2      2      0
  MMP8 WILD-TYPE    169    181     99     20
D257V3, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP8 MUTATED        4      2      6
  MMP8 WILD-TYPE     83     78     94
D257V4, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP8 MUTATED        1      8      2
  MMP8 WILD-TYPE     88    152    136
D257V5, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            8            152
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP8 MUTATED        2      9      0
  MMP8 WILD-TYPE    180    124     72
D257V6, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            9            124
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP8 MUTATED        3      5      3      2
  MMP8 WILD-TYPE    109     91     89    184
D257V7, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP8 MUTATED        2      2      4      1      1      0      3
  MMP8 WILD-TYPE     58     48     45     39     62    125     96
D257V8, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP8 MUTATED        6      2      1      4
  MMP8 WILD-TYPE    124     76     67    192
D257V9, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MMP8 MUTATED        0      3      1      1      4      2      1      0      1
  MMP8 WILD-TYPE     40     59     27     79     65     46     42     28     73
D257V10, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP8 MUTATED        0      1      0      2
  MMP8 WILD-TYPE     33     30     27     17
D257V11, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP8 MUTATED        2      0      1      0
  MMP8 WILD-TYPE     52     10     23     22
D257V12, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(258) Variable = RAG1AP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1AP1 MUTATED        1      0      0      0
  RAG1AP1 WILD-TYPE     45     58     64     43
D258V1, multiclass
[1] "Remove cluster labels:" "RAG1AP1 MUTATED"       
clus
  RAG1AP1 MUTATED RAG1AP1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAG1AP1 MUTATED        1      0      0
  RAG1AP1 WILD-TYPE     50     83     77
D258V2, multiclass
[1] "Remove cluster labels:" "RAG1AP1 MUTATED"       
clus
  RAG1AP1 MUTATED RAG1AP1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1AP1 MUTATED        3      1      1      0
  RAG1AP1 WILD-TYPE    175    182    100     20
D258V3, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAG1AP1 MUTATED        1      2      2
  RAG1AP1 WILD-TYPE     86     78     98
D258V4, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAG1AP1 MUTATED        0      0      5
  RAG1AP1 WILD-TYPE     89    160    133
D258V5, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               0               160
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAG1AP1 MUTATED        5      0      0
  RAG1AP1 WILD-TYPE    177    133     72
D258V6, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               0               133
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1AP1 MUTATED        2      2      1      1
  RAG1AP1 WILD-TYPE    110     94     91    185
D258V7, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAG1AP1 MUTATED        0      1      3      0      1      0      1
  RAG1AP1 WILD-TYPE     60     49     46     40     62    125     98
D258V8, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1AP1 MUTATED        3      1      0      2
  RAG1AP1 WILD-TYPE    127     77     68    194
D258V9, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAG1AP1 MUTATED        0      2      1      0      3      0      0      0
  RAG1AP1 WILD-TYPE     40     60     27     80     66     48     43     28
                   vv
clus                CLUS_9
  RAG1AP1 MUTATED        0
  RAG1AP1 WILD-TYPE     74
D258V10, multiclass
        clus
vv       RAG1AP1 MUTATED RAG1AP1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1AP1 MUTATED        0      1      0      1
  RAG1AP1 WILD-TYPE     33     30     27     18
D258V11, multiclass
[1] "Remove cluster labels:" "RAG1AP1 MUTATED"       
clus
  RAG1AP1 MUTATED RAG1AP1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6306        TCGA-G4-6309 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1AP1 MUTATED        0      1      1      0
  RAG1AP1 WILD-TYPE     54      9     23     22
D258V12, multiclass
[1] "Remove cluster labels:" "RAG1AP1 MUTATED"       
clus
  RAG1AP1 MUTATED RAG1AP1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6306        TCGA-G4-6309 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" "RAG1AP1 WILD-TYPE" 

Clustering(259) Variable = ALX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALX4 MUTATED        1      0      0      0
  ALX4 WILD-TYPE     45     58     64     43
D259V1, multiclass
[1] "Remove cluster labels:" "ALX4 MUTATED"          
clus
  ALX4 MUTATED ALX4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3950 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALX4 MUTATED        1      0      0
  ALX4 WILD-TYPE     50     83     77
D259V2, multiclass
[1] "Remove cluster labels:" "ALX4 MUTATED"          
clus
  ALX4 MUTATED ALX4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3950 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ALX4 WILD-TYPE" "ALX4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALX4 MUTATED       10      1      1      0
  ALX4 WILD-TYPE    168    182    100     20
D259V3, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALX4 MUTATED        3      1      7
  ALX4 WILD-TYPE     84     79     93
D259V4, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALX4 MUTATED        1      3      6
  ALX4 WILD-TYPE     88    157    132
D259V5, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALX4 MUTATED        8      1      1
  ALX4 WILD-TYPE    174    132     71
D259V6, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALX4 MUTATED        1      7      3      1
  ALX4 WILD-TYPE    111     89     89    185
D259V7, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALX4 MUTATED        0      0      8      2      1      0      1
  ALX4 WILD-TYPE     60     50     41     38     62    125     98
D259V8, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            8             41
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALX4 MUTATED        6      1      1      4
  ALX4 WILD-TYPE    124     77     67    192
D259V9, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ALX4 MUTATED        3      3      0      1      4      0      0      1      0
  ALX4 WILD-TYPE     37     59     28     79     65     48     43     27     74
D259V10, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALX4 MUTATED        0      0      1      3
  ALX4 WILD-TYPE     33     31     26     16
D259V11, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALX4 MUTATED        1      0      3      0
  ALX4 WILD-TYPE     53     10     21     22
D259V12, multiclass
        clus
vv       ALX4 MUTATED ALX4 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(260) Variable = OR51E1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51E1 MUTATED        2      0      0      1
  OR51E1 WILD-TYPE     44     58     64     42
D260V1, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51E1 MUTATED        1      1      1
  OR51E1 WILD-TYPE     50     82     76
D260V2, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51E1 MUTATED        7      4      4      0
  OR51E1 WILD-TYPE    171    179     97     20
D260V3, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              4              179
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51E1 MUTATED        3      2      7
  OR51E1 WILD-TYPE     84     78     93
D260V4, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51E1 MUTATED        2      5      7
  OR51E1 WILD-TYPE     87    155    131
D260V5, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51E1 MUTATED        8      4      2
  OR51E1 WILD-TYPE    174    129     70
D260V6, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51E1 MUTATED        4      6      2      3
  OR51E1 WILD-TYPE    108     90     90    183
D260V7, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              6               90
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR51E1 MUTATED        2      2      6      1      2      1      1
  OR51E1 WILD-TYPE     58     48     43     39     61    124     98
D260V8, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51E1 MUTATED        9      0      2      4
  OR51E1 WILD-TYPE    121     78     66    192
D260V9, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              0               78
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR51E1 MUTATED        2      0      0      4      6      0      2      1
  OR51E1 WILD-TYPE     38     62     28     76     63     48     41     27
                  vv
clus               CLUS_9
  OR51E1 MUTATED        0
  OR51E1 WILD-TYPE     74
D260V10, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              4               76
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51E1 MUTATED        2      0      2      0
  OR51E1 WILD-TYPE     31     31     25     19
D260V11, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51E1 MUTATED        1      0      2      1
  OR51E1 WILD-TYPE     53     10     22     21
D260V12, multiclass
        clus
vv       OR51E1 MUTATED OR51E1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(261) Variable = CBL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBL MUTATED        0      0      1      3
  CBL WILD-TYPE     46     58     63     40
D261V1, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           0            46
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CBL MUTATED        1      2      1
  CBL WILD-TYPE     50     81     76
D261V2, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           1            50
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBL MUTATED       13     15      9      2
  CBL WILD-TYPE    165    168     92     18
D261V3, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1          13           165
  CLUS_2          15           168
  CLUS_3           9            92
  CLUS_4           2            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CBL MUTATED       13     12     10
  CBL WILD-TYPE     74     68     90
D261V4, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1          13            74
  CLUS_2          12            68
  CLUS_3          10            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CBL MUTATED        5     17     12
  CBL WILD-TYPE     84    143    126
D261V5, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           5            84
  CLUS_2          17           143
  CLUS_3          12           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CBL MUTATED       14     12      8
  CBL WILD-TYPE    168    121     64
D261V6, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1          14           168
  CLUS_2          12           121
  CLUS_3           8            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBL MUTATED       14     11      8      6
  CBL WILD-TYPE     98     85     84    180
D261V7, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1          14            98
  CLUS_2          11            85
  CLUS_3           8            84
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBL MUTATED        9      6      7      3      9      2      3
  CBL WILD-TYPE     51     44     42     37     54    123     96
D261V8, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           9            51
  CLUS_2           6            44
  CLUS_3           7            42
  CLUS_4           3            37
  CLUS_5           9            54
  CLUS_6           2           123
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBL MUTATED       18      8      7      6
  CBL WILD-TYPE    112     70     61    190
D261V9, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1          18           112
  CLUS_2           8            70
  CLUS_3           7            61
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CBL MUTATED        3      8      7      5      3      2      8      0      3
  CBL WILD-TYPE     37     54     21     75     66     46     35     28     71
D261V10, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           3            37
  CLUS_2           8            54
  CLUS_3           7            21
  CLUS_4           5            75
  CLUS_5           3            66
  CLUS_6           2            46
  CLUS_7           8            35
  CLUS_8           0            28
  CLUS_9           3            71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBL MUTATED        3      4      0      6
  CBL WILD-TYPE     30     27     27     13
D261V11, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           3            30
  CLUS_2           4            27
  CLUS_3           0            27
  CLUS_4           6            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBL MUTATED        7      1      1      4
  CBL WILD-TYPE     47      9     23     18
D261V12, multiclass
        clus
vv       CBL MUTATED CBL WILD-TYPE
  CLUS_1           7            47
  CLUS_2           1             9
  CLUS_3           1            23
  CLUS_4           4            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(262) Variable = SLC28A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC28A2 MUTATED        1      1      0      0
  SLC28A2 WILD-TYPE     45     57     64     43
D262V1, multiclass
[1] "Remove cluster labels:" "SLC28A2 MUTATED"       
clus
  SLC28A2 MUTATED SLC28A2 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02H 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AY-4071 
"SLC28A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC28A2 MUTATED        1      1      0
  SLC28A2 WILD-TYPE     50     82     77
D262V2, multiclass
[1] "Remove cluster labels:" "SLC28A2 MUTATED"       
clus
  SLC28A2 MUTATED SLC28A2 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02H 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" "SLC28A2 WILD-TYPE" 
       TCGA-AY-4071 
"SLC28A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC28A2 MUTATED       11      4      0      0
  SLC28A2 WILD-TYPE    167    179    101     20
D262V3, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC28A2 MUTATED        5      2      6
  SLC28A2 WILD-TYPE     82     78     94
D262V4, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC28A2 MUTATED        2      5      7
  SLC28A2 WILD-TYPE     87    155    131
D262V5, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               5               155
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC28A2 MUTATED        8      5      1
  SLC28A2 WILD-TYPE    174    128     71
D262V6, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC28A2 MUTATED        4      4      6      1
  SLC28A2 WILD-TYPE    108     92     86    185
D262V7, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               4                92
  CLUS_3               6                86
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC28A2 MUTATED        2      3      4      1      3      1      1
  SLC28A2 WILD-TYPE     58     47     45     39     60    124     98
D262V8, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC28A2 MUTATED        5      5      2      3
  SLC28A2 WILD-TYPE    125     73     66    193
D262V9, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               5                73
  CLUS_3               2                66
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC28A2 MUTATED        2      5      2      1      2      0      1      1
  SLC28A2 WILD-TYPE     38     57     26     79     67     48     42     27
                   vv
clus                CLUS_9
  SLC28A2 MUTATED        1
  SLC28A2 WILD-TYPE     73
D262V10, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC28A2 MUTATED        1      1      0      1
  SLC28A2 WILD-TYPE     32     30     27     18
D262V11, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC28A2 MUTATED        2      1      0      0
  SLC28A2 WILD-TYPE     52      9     24     22
D262V12, multiclass
        clus
vv       SLC28A2 MUTATED SLC28A2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(263) Variable = ZNF222 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF222 MUTATED        1      0      1      2
  ZNF222 WILD-TYPE     45     58     63     41
D263V1, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF222 MUTATED        0      2      2
  ZNF222 WILD-TYPE     51     81     75
D263V2, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF222 MUTATED        7      3      1      0
  ZNF222 WILD-TYPE    171    180    100     20
D263V3, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF222 MUTATED        2      1      4
  ZNF222 WILD-TYPE     85     79     96
D263V4, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF222 MUTATED        0      5      4
  ZNF222 WILD-TYPE     89    155    134
D263V5, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF222 MUTATED        3      6      0
  ZNF222 WILD-TYPE    179    127     72
D263V6, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF222 MUTATED        1      4      2      4
  ZNF222 WILD-TYPE    111     92     90    182
D263V7, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF222 MUTATED        1      1      3      1      2      2      1
  ZNF222 WILD-TYPE     59     49     46     39     61    123     98
D263V8, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF222 MUTATED        3      1      1      5
  ZNF222 WILD-TYPE    127     77     67    191
D263V9, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF222 MUTATED        2      1      1      2      4      0      0      0
  ZNF222 WILD-TYPE     38     61     27     78     65     48     43     28
                  vv
clus               CLUS_9
  ZNF222 MUTATED        0
  ZNF222 WILD-TYPE     74
D263V10, multiclass
        clus
vv       ZNF222 MUTATED ZNF222 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF222 MUTATED        0      1      1      0
  ZNF222 WILD-TYPE     33     30     26     19
D263V11, multiclass
[1] "Remove cluster labels:" "ZNF222 MUTATED"        
clus
  ZNF222 MUTATED ZNF222 WILD-TYPE 
               2              108 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF222 MUTATED        1      1      0      0
  ZNF222 WILD-TYPE     53      9     24     22
D263V12, multiclass
[1] "Remove cluster labels:" "ZNF222 MUTATED"        
clus
  ZNF222 MUTATED ZNF222 WILD-TYPE 
               2              108 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" "ZNF222 WILD-TYPE" 

Clustering(264) Variable = UBQLN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        1      0      0      1
  UBQLN2 WILD-TYPE     45     58     64     42
D264V1, multiclass
[1] "Remove cluster labels:" "UBQLN2 MUTATED"        
clus
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AY-4071 
"UBQLN2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        2      0      0
  UBQLN2 WILD-TYPE     49     83     77
D264V2, multiclass
[1] "Remove cluster labels:" "UBQLN2 MUTATED"        
clus
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" "UBQLN2 WILD-TYPE" 
      TCGA-AY-4071 
"UBQLN2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED       10      1      1      0
  UBQLN2 WILD-TYPE    168    182    100     20
D264V3, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        4      1      5
  UBQLN2 WILD-TYPE     83     79     95
D264V4, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        0      4      8
  UBQLN2 WILD-TYPE     89    156    130
D264V5, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        8      4      0
  UBQLN2 WILD-TYPE    174    129     72
D264V6, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        1      5      4      2
  UBQLN2 WILD-TYPE    111     91     88    184
D264V7, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBQLN2 MUTATED        0      0      6      1      3      0      2
  UBQLN2 WILD-TYPE     60     50     43     39     60    125     97
D264V8, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        2      3      1      5
  UBQLN2 WILD-TYPE    128     75     67    191
D264V9, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UBQLN2 MUTATED        1      4      0      1      3      0      1      1
  UBQLN2 WILD-TYPE     39     58     28     79     66     48     42     27
                  vv
clus               CLUS_9
  UBQLN2 MUTATED        0
  UBQLN2 WILD-TYPE     74
D264V10, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        1      1      1      1
  UBQLN2 WILD-TYPE     32     30     26     18
D264V11, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        2      1      1      0
  UBQLN2 WILD-TYPE     52      9     23     22
D264V12, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(265) Variable = PPARGC1A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1A MUTATED        4      0      0      1
  PPARGC1A WILD-TYPE     42     58     64     42
D265V1, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1A MUTATED        5      0      0
  PPARGC1A WILD-TYPE     46     83     77
D265V2, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                0                 83
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1A MUTATED       17      3      3      0
  PPARGC1A WILD-TYPE    161    180     98     20
D265V3, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1               17                161
  CLUS_2                3                180
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1A MUTATED        3      6      9
  PPARGC1A WILD-TYPE     84     74     91
D265V4, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                6                 74
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1A MUTATED        6      8      8
  PPARGC1A WILD-TYPE     83    152    130
D265V5, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                6                 83
  CLUS_2                8                152
  CLUS_3                8                130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1A MUTATED        6     10      6
  PPARGC1A WILD-TYPE    176    123     66
D265V6, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                6                176
  CLUS_2               10                123
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1A MUTATED        4      8      5      6
  PPARGC1A WILD-TYPE    108     88     87    180
D265V7, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                4                108
  CLUS_2                8                 88
  CLUS_3                5                 87
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPARGC1A MUTATED        2      6      4      2      3      0      6
  PPARGC1A WILD-TYPE     58     44     45     38     60    125     93
D265V8, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                6                 44
  CLUS_3                4                 45
  CLUS_4                2                 38
  CLUS_5                3                 60
  CLUS_6                0                125
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1A MUTATED       12      3      1      7
  PPARGC1A WILD-TYPE    118     75     67    189
D265V9, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1               12                118
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPARGC1A MUTATED        6      3      1      4      7      0      2      0
  PPARGC1A WILD-TYPE     34     59     27     76     62     48     41     28
                    vv
clus                 CLUS_9
  PPARGC1A MUTATED        0
  PPARGC1A WILD-TYPE     74
D265V10, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                6                 34
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                4                 76
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1A MUTATED        1      0      0      3
  PPARGC1A WILD-TYPE     32     31     27     16
D265V11, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1A MUTATED        2      0      2      0
  PPARGC1A WILD-TYPE     52     10     22     22
D265V12, multiclass
        clus
vv       PPARGC1A MUTATED PPARGC1A WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(266) Variable = ATP6V1B1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        5      0      1      1
  ATP6V1B1 WILD-TYPE     41     58     63     42
D266V1, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED        4      1      2
  ATP6V1B1 WILD-TYPE     47     82     75
D266V2, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED       14      1      1      0
  ATP6V1B1 WILD-TYPE    164    182    100     20
D266V3, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED        3      0      7
  ATP6V1B1 WILD-TYPE     84     80     93
D266V4, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED        2      6      5
  ATP6V1B1 WILD-TYPE     87    154    133
D266V5, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                6                154
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED        7      1      5
  ATP6V1B1 WILD-TYPE    175    132     67
D266V6, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                7                175
  CLUS_2                1                132
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        2      3      4      7
  ATP6V1B1 WILD-TYPE    110     93     88    179
D266V7, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                4                 88
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP6V1B1 MUTATED        1      0      5      2      1      1      6
  ATP6V1B1 WILD-TYPE     59     50     44     38     62    124     93
D266V8, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                5                 44
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        6      3      0      7
  ATP6V1B1 WILD-TYPE    124     75     68    189
D266V9, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                3                 75
  CLUS_3                0                 68
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP6V1B1 MUTATED        1      5      0      4      4      1      0      1
  ATP6V1B1 WILD-TYPE     39     57     28     76     65     47     43     27
                    vv
clus                 CLUS_9
  ATP6V1B1 MUTATED        0
  ATP6V1B1 WILD-TYPE     74
D266V10, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                5                 57
  CLUS_3                0                 28
  CLUS_4                4                 76
  CLUS_5                4                 65
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        1      1      0      4
  ATP6V1B1 WILD-TYPE     32     30     27     15
D266V11, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                4                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        4      1      1      0
  ATP6V1B1 WILD-TYPE     50      9     23     22
D266V12, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                1                  9
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(267) Variable = ZNF583 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF583 MUTATED        1      1      0      4
  ZNF583 WILD-TYPE     45     57     64     39
D267V1, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF583 MUTATED        1      2      3
  ZNF583 WILD-TYPE     50     81     74
D267V2, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF583 MUTATED       13      2      2      0
  ZNF583 WILD-TYPE    165    181     99     20
D267V3, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF583 MUTATED        3      3      6
  ZNF583 WILD-TYPE     84     77     94
D267V4, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              3               77
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF583 MUTATED        1      3      6
  ZNF583 WILD-TYPE     88    157    132
D267V5, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF583 MUTATED        7      3      0
  ZNF583 WILD-TYPE    175    130     72
D267V6, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF583 MUTATED        3      4      5      6
  ZNF583 WILD-TYPE    109     92     87    180
D267V7, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF583 MUTATED        2      1      6      0      3      2      4
  ZNF583 WILD-TYPE     58     49     43     40     60    123     95
D267V8, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF583 MUTATED        5      6      0      7
  ZNF583 WILD-TYPE    125     72     68    189
D267V9, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              6               72
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF583 MUTATED        0      5      2      3      5      0      0      1
  ZNF583 WILD-TYPE     40     57     26     77     64     48     43     27
                  vv
clus               CLUS_9
  ZNF583 MUTATED        2
  ZNF583 WILD-TYPE     72
D267V10, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF583 MUTATED        1      0      0      2
  ZNF583 WILD-TYPE     32     31     27     17
D267V11, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF583 MUTATED        3      0      0      0
  ZNF583 WILD-TYPE     51     10     24     22
D267V12, multiclass
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(268) Variable = OSBPL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        0      0      0      1
  OSBPL2 WILD-TYPE     46     58     64     42
D268V1, multiclass
[1] "Remove cluster labels:" "OSBPL2 MUTATED"        
clus
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        0      0      1
  OSBPL2 WILD-TYPE     51     83     76
D268V2, multiclass
[1] "Remove cluster labels:" "OSBPL2 MUTATED"        
clus
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        7      2      3      0
  OSBPL2 WILD-TYPE    171    181     98     20
D268V3, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        4      2      5
  OSBPL2 WILD-TYPE     83     78     95
D268V4, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        0      4      5
  OSBPL2 WILD-TYPE     89    156    133
D268V5, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        5      4      0
  OSBPL2 WILD-TYPE    177    129     72
D268V6, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        2      5      4      1
  OSBPL2 WILD-TYPE    110     91     88    185
D268V7, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSBPL2 MUTATED        3      2      5      0      2      0      0
  OSBPL2 WILD-TYPE     57     48     44     40     61    125     99
D268V8, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        8      2      0      2
  OSBPL2 WILD-TYPE    122     76     68    194
D268V9, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OSBPL2 MUTATED        1      3      2      1      3      1      0      0
  OSBPL2 WILD-TYPE     39     59     26     79     66     47     43     28
                  vv
clus               CLUS_9
  OSBPL2 MUTATED        1
  OSBPL2 WILD-TYPE     73
D268V10, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        0      1      0      0
  OSBPL2 WILD-TYPE     33     30     27     19
D268V11, multiclass
[1] "Remove cluster labels:" "OSBPL2 MUTATED"        
clus
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-G5-6641 
"OSBPL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        1      0      0      0
  OSBPL2 WILD-TYPE     53     10     24     22
D268V12, multiclass
[1] "Remove cluster labels:" "OSBPL2 MUTATED"        
clus
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" "OSBPL2 WILD-TYPE" 
      TCGA-G5-6641 
"OSBPL2 WILD-TYPE" 

Clustering(269) Variable = CRY1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRY1 MUTATED        1      0      0      1
  CRY1 WILD-TYPE     45     58     64     42
D269V1, multiclass
[1] "Remove cluster labels:" "CRY1 MUTATED"          
clus
  CRY1 MUTATED CRY1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AY-4071 
"CRY1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRY1 MUTATED        1      0      1
  CRY1 WILD-TYPE     50     83     76
D269V2, multiclass
[1] "Remove cluster labels:" "CRY1 MUTATED"          
clus
  CRY1 MUTATED CRY1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" "CRY1 WILD-TYPE" 
    TCGA-AY-4071 
"CRY1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRY1 MUTATED       12      2      2      0
  CRY1 WILD-TYPE    166    181     99     20
D269V3, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRY1 MUTATED        4      3      7
  CRY1 WILD-TYPE     83     77     93
D269V4, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRY1 MUTATED        3      3      8
  CRY1 WILD-TYPE     86    157    130
D269V5, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            3            157
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRY1 MUTATED        7      4      3
  CRY1 WILD-TYPE    175    129     69
D269V6, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRY1 MUTATED        5      4      5      2
  CRY1 WILD-TYPE    107     92     87    184
D269V7, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CRY1 MUTATED        3      1      4      2      4      0      2
  CRY1 WILD-TYPE     57     49     45     38     59    125     97
D269V8, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRY1 MUTATED        3      4      5      4
  CRY1 WILD-TYPE    127     74     63    192
D269V9, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            4             74
  CLUS_3            5             63
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CRY1 MUTATED        1      3      0      1      5      0      5      1      0
  CRY1 WILD-TYPE     39     59     28     79     64     48     38     27     74
D269V10, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            5             38
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRY1 MUTATED        1      1      2      1
  CRY1 WILD-TYPE     32     30     25     18
D269V11, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRY1 MUTATED        2      0      0      3
  CRY1 WILD-TYPE     52     10     24     19
D269V12, multiclass
        clus
vv       CRY1 MUTATED CRY1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(270) Variable = ZFYVE26 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        4      0      0      4
  ZFYVE26 WILD-TYPE     42     58     64     39
D270V1, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        6      1      1
  ZFYVE26 WILD-TYPE     45     82     76
D270V2, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED       23      4      4      1
  ZFYVE26 WILD-TYPE    155    179     97     19
D270V3, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1              23               155
  CLUS_2               4               179
  CLUS_3               4                97
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        9      2     14
  ZFYVE26 WILD-TYPE     78     78     86
D270V4, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               2                78
  CLUS_3              14                86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED        4     10     13
  ZFYVE26 WILD-TYPE     85    150    125
D270V5, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               4                85
  CLUS_2              10               150
  CLUS_3              13               125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE26 MUTATED       16      7      4
  ZFYVE26 WILD-TYPE    166    126     68
D270V6, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1              16               166
  CLUS_2               7               126
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        4     13      7      8
  ZFYVE26 WILD-TYPE    108     83     85    178
D270V7, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               4               108
  CLUS_2              13                83
  CLUS_3               7                85
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFYVE26 MUTATED        5      2     12      5      1      1      6
  ZFYVE26 WILD-TYPE     55     48     37     35     62    124     93
D270V8, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               2                48
  CLUS_3              12                37
  CLUS_4               5                35
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED       14      4      2     11
  ZFYVE26 WILD-TYPE    116     74     66    185
D270V9, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1              14               116
  CLUS_2               4                74
  CLUS_3               2                66
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZFYVE26 MUTATED        3      3      1      5     13      2      3      0
  ZFYVE26 WILD-TYPE     37     59     27     75     56     46     40     28
                   vv
clus                CLUS_9
  ZFYVE26 MUTATED        1
  ZFYVE26 WILD-TYPE     73
D270V10, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               5                75
  CLUS_5              13                56
  CLUS_6               2                46
  CLUS_7               3                40
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        1      3      2      6
  ZFYVE26 WILD-TYPE     32     28     25     13
D270V11, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                28
  CLUS_3               2                25
  CLUS_4               6                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE26 MUTATED        5      0      6      1
  ZFYVE26 WILD-TYPE     49     10     18     21
D270V12, multiclass
        clus
vv       ZFYVE26 MUTATED ZFYVE26 WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               6                18
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(271) Variable = PALB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        2      0      1      3
  PALB2 WILD-TYPE     44     58     63     40
D271V1, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        4      0      2
  PALB2 WILD-TYPE     47     83     75
D271V2, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED       14      3      3      0
  PALB2 WILD-TYPE    164    180     98     20
D271V3, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        4      3      7
  PALB2 WILD-TYPE     83     77     93
D271V4, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        3      6      8
  PALB2 WILD-TYPE     86    154    130
D271V5, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        6      7      4
  PALB2 WILD-TYPE    176    126     68
D271V6, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             7             126
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        4      8      1      7
  PALB2 WILD-TYPE    108     88     91    179
D271V7, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             8              88
  CLUS_3             1              91
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PALB2 MUTATED        4      5      4      0      0      2      5
  PALB2 WILD-TYPE     56     45     45     40     63    123     94
D271V8, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             5              45
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        9      2      0      9
  PALB2 WILD-TYPE    121     76     68    187
D271V9, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PALB2 MUTATED        2      2      1      2      8      4      0      0
  PALB2 WILD-TYPE     38     60     27     78     61     44     43     28
                 vv
clus              CLUS_9
  PALB2 MUTATED        1
  PALB2 WILD-TYPE     73
D271V10, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             8              61
  CLUS_6             4              44
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        0      0      0      1
  PALB2 WILD-TYPE     33     31     27     18
D271V11, multiclass
[1] "Remove cluster labels:" "PALB2 MUTATED"         
clus
  PALB2 MUTATED PALB2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-G5-6641 
"PALB2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        0      0      1      0
  PALB2 WILD-TYPE     54     10     23     22
D271V12, multiclass
[1] "Remove cluster labels:" "PALB2 MUTATED"         
clus
  PALB2 MUTATED PALB2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" "PALB2 WILD-TYPE" 
     TCGA-G5-6641 
"PALB2 WILD-TYPE" 

Clustering(272) Variable = PKD2L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L1 MUTATED        2      1      1      2
  PKD2L1 WILD-TYPE     44     57     63     41
D272V1, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKD2L1 MUTATED        2      3      1
  PKD2L1 WILD-TYPE     49     80     76
D272V2, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L1 MUTATED       18      3      2      1
  PKD2L1 WILD-TYPE    160    180     99     19
D272V3, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKD2L1 MUTATED        4      1     12
  PKD2L1 WILD-TYPE     83     79     88
D272V4, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKD2L1 MUTATED        5     11      6
  PKD2L1 WILD-TYPE     84    149    132
D272V5, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              5               84
  CLUS_2             11              149
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKD2L1 MUTATED        9      9      4
  PKD2L1 WILD-TYPE    173    124     68
D272V6, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              9              124
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L1 MUTATED        3     11      3      7
  PKD2L1 WILD-TYPE    109     85     89    179
D272V7, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2             11               85
  CLUS_3              3               89
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PKD2L1 MUTATED        2      4      9      1      1      1      6
  PKD2L1 WILD-TYPE     58     46     40     39     62    124     93
D272V8, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              9               40
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L1 MUTATED       13      3      0      8
  PKD2L1 WILD-TYPE    117     75     68    188
D272V9, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1             13              117
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PKD2L1 MUTATED        4      2      4      1     11      1      0      0
  PKD2L1 WILD-TYPE     36     60     24     79     58     47     43     28
                  vv
clus               CLUS_9
  PKD2L1 MUTATED        1
  PKD2L1 WILD-TYPE     73
D272V10, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              2               60
  CLUS_3              4               24
  CLUS_4              1               79
  CLUS_5             11               58
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L1 MUTATED        3      0      0      3
  PKD2L1 WILD-TYPE     30     31     27     16
D272V11, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L1 MUTATED        4      0      2      0
  PKD2L1 WILD-TYPE     50     10     22     22
D272V12, multiclass
        clus
vv       PKD2L1 MUTATED PKD2L1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(273) Variable = COLEC10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC10 MUTATED        1      0      0      2
  COLEC10 WILD-TYPE     45     58     64     41
D273V1, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC10 MUTATED        2      0      1
  COLEC10 WILD-TYPE     49     83     76
D273V2, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC10 MUTATED        3      3      3      1
  COLEC10 WILD-TYPE    175    180     98     19
D273V3, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               3               180
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC10 MUTATED        1      5      1
  COLEC10 WILD-TYPE     86     75     99
D273V4, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               5                75
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC10 MUTATED        2      4      2
  COLEC10 WILD-TYPE     87    156    136
D273V5, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC10 MUTATED        3      3      2
  COLEC10 WILD-TYPE    179    130     70
D273V6, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC10 MUTATED        4      0      2      4
  COLEC10 WILD-TYPE    108     96     90    182
D273V7, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               0                96
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COLEC10 MUTATED        5      0      0      0      2      1      2
  COLEC10 WILD-TYPE     55     50     49     40     61    124     97
D273V8, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               0                50
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC10 MUTATED        6      0      0      4
  COLEC10 WILD-TYPE    124     78     68    192
D273V9, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COLEC10 MUTATED        0      0      1      5      3      0      0      0
  COLEC10 WILD-TYPE     40     62     27     75     66     48     43     28
                   vv
clus                CLUS_9
  COLEC10 MUTATED        1
  COLEC10 WILD-TYPE     73
D273V10, multiclass
        clus
vv       COLEC10 MUTATED COLEC10 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               5                75
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC10 MUTATED        1      0      0      1
  COLEC10 WILD-TYPE     32     31     27     18
D273V11, multiclass
[1] "Remove cluster labels:" "COLEC10 MUTATED"       
clus
  COLEC10 MUTATED COLEC10 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC10 MUTATED        1      0      1      0
  COLEC10 WILD-TYPE     53     10     23     22
D273V12, multiclass
[1] "Remove cluster labels:" "COLEC10 MUTATED"       
clus
  COLEC10 MUTATED COLEC10 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" "COLEC10 WILD-TYPE" 

Clustering(274) Variable = C2ORF77 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF77 MUTATED        2      0      0      2
  C2ORF77 WILD-TYPE     44     58     64     41
D274V1, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF77 MUTATED        1      2      1
  C2ORF77 WILD-TYPE     50     81     76
D274V2, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF77 MUTATED        8      1      0      0
  C2ORF77 WILD-TYPE    170    182    101     20
D274V3, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF77 MUTATED        2      0      3
  C2ORF77 WILD-TYPE     85     80     97
D274V4, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF77 MUTATED        1      2      6
  C2ORF77 WILD-TYPE     88    158    132
D274V5, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF77 MUTATED        6      2      1
  C2ORF77 WILD-TYPE    176    131     71
D274V6, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF77 MUTATED        0      2      3      4
  C2ORF77 WILD-TYPE    112     94     89    182
D274V7, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C2ORF77 MUTATED        1      0      3      1      1      1      2
  C2ORF77 WILD-TYPE     59     50     46     39     62    124     97
D274V8, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF77 MUTATED        3      2      0      4
  C2ORF77 WILD-TYPE    127     76     68    192
D274V9, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C2ORF77 MUTATED        1      3      1      0      2      0      1      1
  C2ORF77 WILD-TYPE     39     59     27     80     67     48     42     27
                   vv
clus                CLUS_9
  C2ORF77 MUTATED        0
  C2ORF77 WILD-TYPE     74
D274V10, multiclass
        clus
vv       C2ORF77 MUTATED C2ORF77 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF77 MUTATED        0      0      0      1
  C2ORF77 WILD-TYPE     33     31     27     18
D274V11, multiclass
[1] "Remove cluster labels:" "C2ORF77 MUTATED"       
clus
  C2ORF77 MUTATED C2ORF77 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-G5-6641 
"C2ORF77 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF77 MUTATED        1      0      0      0
  C2ORF77 WILD-TYPE     53     10     24     22
D274V12, multiclass
[1] "Remove cluster labels:" "C2ORF77 MUTATED"       
clus
  C2ORF77 MUTATED C2ORF77 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" "C2ORF77 WILD-TYPE" 
       TCGA-G5-6641 
"C2ORF77 WILD-TYPE" 

Clustering(275) Variable = DHRS7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS7 MUTATED        1      0      0      0
  DHRS7 WILD-TYPE     45     58     64     43
D275V1, multiclass
[1] "Remove cluster labels:" "DHRS7 MUTATED"         
clus
  DHRS7 MUTATED DHRS7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHRS7 MUTATED        1      0      0
  DHRS7 WILD-TYPE     50     83     77
D275V2, multiclass
[1] "Remove cluster labels:" "DHRS7 MUTATED"         
clus
  DHRS7 MUTATED DHRS7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS7 MUTATED        8      2      0      0
  DHRS7 WILD-TYPE    170    181    101     20
D275V3, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHRS7 MUTATED        5      1      3
  DHRS7 WILD-TYPE     82     79     97
D275V4, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHRS7 MUTATED        1      3      5
  DHRS7 WILD-TYPE     88    157    133
D275V5, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHRS7 MUTATED        6      1      2
  DHRS7 WILD-TYPE    176    132     70
D275V6, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS7 MUTATED        1      4      3      2
  DHRS7 WILD-TYPE    111     92     89    184
D275V7, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHRS7 MUTATED        0      1      5      1      1      0      2
  DHRS7 WILD-TYPE     60     49     44     39     62    125     97
D275V8, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS7 MUTATED        5      3      0      2
  DHRS7 WILD-TYPE    125     75     68    194
D275V9, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DHRS7 MUTATED        2      4      1      0      2      0      0      0
  DHRS7 WILD-TYPE     38     58     27     80     67     48     43     28
                 vv
clus              CLUS_9
  DHRS7 MUTATED        1
  DHRS7 WILD-TYPE     73
D275V10, multiclass
        clus
vv       DHRS7 MUTATED DHRS7 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS7 MUTATED        1      0      0      1
  DHRS7 WILD-TYPE     32     31     27     18
D275V11, multiclass
[1] "Remove cluster labels:" "DHRS7 MUTATED"         
clus
  DHRS7 MUTATED DHRS7 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS7 MUTATED        2      0      0      0
  DHRS7 WILD-TYPE     52     10     24     22
D275V12, multiclass
[1] "Remove cluster labels:" "DHRS7 MUTATED"         
clus
  DHRS7 MUTATED DHRS7 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" "DHRS7 WILD-TYPE" 

Clustering(276) Variable = PANK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK3 MUTATED        2      0      0      2
  PANK3 WILD-TYPE     44     58     64     41
D276V1, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK3 MUTATED        2      1      1
  PANK3 WILD-TYPE     49     82     76
D276V2, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK3 MUTATED        3      2      1      0
  PANK3 WILD-TYPE    175    181    100     20
D276V3, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK3 MUTATED        2      0      1
  PANK3 WILD-TYPE     85     80     99
D276V4, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK3 MUTATED        0      4      3
  PANK3 WILD-TYPE     89    156    135
D276V5, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK3 MUTATED        3      3      1
  PANK3 WILD-TYPE    179    130     71
D276V6, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK3 MUTATED        1      1      1      4
  PANK3 WILD-TYPE    111     95     91    182
D276V7, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PANK3 MUTATED        1      0      1      1      1      0      3
  PANK3 WILD-TYPE     59     50     48     39     62    125     96
D276V8, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK3 MUTATED        2      1      0      4
  PANK3 WILD-TYPE    128     77     68    192
D276V9, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PANK3 MUTATED        2      0      1      0      4      0      0      0
  PANK3 WILD-TYPE     38     62     27     80     65     48     43     28
                 vv
clus              CLUS_9
  PANK3 MUTATED        0
  PANK3 WILD-TYPE     74
D276V10, multiclass
        clus
vv       PANK3 MUTATED PANK3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK3 MUTATED        0      0      0      1
  PANK3 WILD-TYPE     33     31     27     18
D276V11, multiclass
[1] "Remove cluster labels:" "PANK3 MUTATED"         
clus
  PANK3 MUTATED PANK3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-G5-6641 
"PANK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK3 MUTATED        0      0      1      0
  PANK3 WILD-TYPE     54     10     23     22
D276V12, multiclass
[1] "Remove cluster labels:" "PANK3 MUTATED"         
clus
  PANK3 MUTATED PANK3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" "PANK3 WILD-TYPE" 
     TCGA-G5-6641 
"PANK3 WILD-TYPE" 

Clustering(277) Variable = G3BP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP2 MUTATED        0      0      0      3
  G3BP2 WILD-TYPE     46     58     64     40
D277V1, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP2 MUTATED        1      1      1
  G3BP2 WILD-TYPE     50     82     76
D277V2, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP2 MUTATED       10      0      0      0
  G3BP2 WILD-TYPE    168    183    101     20
D277V3, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP2 MUTATED        2      0      5
  G3BP2 WILD-TYPE     85     80     95
D277V4, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP2 MUTATED        0      2      7
  G3BP2 WILD-TYPE     89    158    131
D277V5, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP2 MUTATED        7      2      0
  G3BP2 WILD-TYPE    175    131     72
D277V6, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP2 MUTATED        0      1      6      3
  G3BP2 WILD-TYPE    112     95     86    183
D277V7, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             6              86
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G3BP2 MUTATED        2      0      4      1      1      0      2
  G3BP2 WILD-TYPE     58     50     45     39     62    125     97
D277V8, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP2 MUTATED        6      1      0      2
  G3BP2 WILD-TYPE    124     77     68    194
D277V9, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  G3BP2 MUTATED        0      2      2      1      3      0      1      0
  G3BP2 WILD-TYPE     40     60     26     79     66     48     42     28
                 vv
clus              CLUS_9
  G3BP2 MUTATED        0
  G3BP2 WILD-TYPE     74
D277V10, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP2 MUTATED        1      0      0      3
  G3BP2 WILD-TYPE     32     31     27     16
D277V11, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP2 MUTATED        3      0      1      0
  G3BP2 WILD-TYPE     51     10     23     22
D277V12, multiclass
        clus
vv       G3BP2 MUTATED G3BP2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(278) Variable = TET3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TET3 MUTATED        2      1      2      1
  TET3 WILD-TYPE     44     57     62     42
D278V1, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TET3 MUTATED        2      3      1
  TET3 WILD-TYPE     49     80     76
D278V2, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TET3 MUTATED       16      7      0      1
  TET3 WILD-TYPE    162    176    101     19
D278V3, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            7            176
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TET3 MUTATED        2      3     11
  TET3 WILD-TYPE     85     77     89
D278V4, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3             77
  CLUS_3           11             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TET3 MUTATED        4      7      8
  TET3 WILD-TYPE     85    153    130
D278V5, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            7            153
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TET3 MUTATED        7     10      2
  TET3 WILD-TYPE    175    123     70
D278V6, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            7            175
  CLUS_2           10            123
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TET3 MUTATED        4     10      3      7
  TET3 WILD-TYPE    108     86     89    179
D278V7, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            4            108
  CLUS_2           10             86
  CLUS_3            3             89
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TET3 MUTATED        3      1      9      2      1      3      5
  TET3 WILD-TYPE     57     49     40     38     62    122     94
D278V8, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            9             40
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            3            122
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TET3 MUTATED       11      1      3      9
  TET3 WILD-TYPE    119     77     65    187
D278V9, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            1             77
  CLUS_3            3             65
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TET3 MUTATED        2      1      0      3     12      2      1      0      3
  TET3 WILD-TYPE     38     61     28     77     57     46     42     28     71
D278V10, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5           12             57
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TET3 MUTATED        0      0      1      5
  TET3 WILD-TYPE     33     31     26     14
D278V11, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TET3 MUTATED        2      1      2      1
  TET3 WILD-TYPE     52      9     22     21
D278V12, multiclass
        clus
vv       TET3 MUTATED TET3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(279) Variable = C12ORF5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF5 MUTATED        0      0      0      0
  C12ORF5 WILD-TYPE     46     58     64     43
D279V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C12ORF5 MUTATED        0      0      0
  C12ORF5 WILD-TYPE     51     83     77
D279V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF5 MUTATED        2      3      1      0
  C12ORF5 WILD-TYPE    176    180    100     20
D279V3, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C12ORF5 MUTATED        2      1      3
  C12ORF5 WILD-TYPE     85     79     97
D279V4, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C12ORF5 MUTATED        0      1      5
  C12ORF5 WILD-TYPE     89    159    133
D279V5, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C12ORF5 MUTATED        5      1      0
  C12ORF5 WILD-TYPE    177    132     72
D279V6, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF5 MUTATED        2      3      1      0
  C12ORF5 WILD-TYPE    110     93     91    186
D279V7, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C12ORF5 MUTATED        2      3      0      0      1      0      0
  C12ORF5 WILD-TYPE     58     47     49     40     62    125     99
D279V8, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF5 MUTATED        4      0      1      1
  C12ORF5 WILD-TYPE    126     78     67    195
D279V9, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C12ORF5 MUTATED        0      0      1      3      0      0      1      0
  C12ORF5 WILD-TYPE     40     62     27     77     69     48     42     28
                   vv
clus                CLUS_9
  C12ORF5 MUTATED        1
  C12ORF5 WILD-TYPE     73
D279V10, multiclass
        clus
vv       C12ORF5 MUTATED C12ORF5 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               0                69
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF5 MUTATED        0      0      1      0
  C12ORF5 WILD-TYPE     33     31     26     19
D279V11, multiclass
[1] "Remove cluster labels:" "C12ORF5 MUTATED"       
clus
  C12ORF5 MUTATED C12ORF5 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-G5-6641 
"C12ORF5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF5 MUTATED        0      0      1      0
  C12ORF5 WILD-TYPE     54     10     23     22
D279V12, multiclass
[1] "Remove cluster labels:" "C12ORF5 MUTATED"       
clus
  C12ORF5 MUTATED C12ORF5 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" "C12ORF5 WILD-TYPE" 
       TCGA-G5-6641 
"C12ORF5 WILD-TYPE" 

Clustering(280) Variable = GPR98 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED        9      0      2      7
  GPR98 WILD-TYPE     37     58     62     36
D280V1, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             9              37
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED       12      3      3
  GPR98 WILD-TYPE     39     80     74
D280V2, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            12              39
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED       45     15      9      0
  GPR98 WILD-TYPE    133    168     92     20
D280V3, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            45             133
  CLUS_2            15             168
  CLUS_3             9              92
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED       20     10     21
  GPR98 WILD-TYPE     67     70     79
D280V4, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            20              67
  CLUS_2            10              70
  CLUS_3            21              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED        8     19     29
  GPR98 WILD-TYPE     81    141    109
D280V5, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             8              81
  CLUS_2            19             141
  CLUS_3            29             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR98 MUTATED       29     17     10
  GPR98 WILD-TYPE    153    116     62
D280V6, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            29             153
  CLUS_2            17             116
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED       14     22     15     18
  GPR98 WILD-TYPE     98     74     77    168
D280V7, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            14              98
  CLUS_2            22              74
  CLUS_3            15              77
  CLUS_4            18             168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR98 MUTATED       10      5     23      6      6      3     16
  GPR98 WILD-TYPE     50     45     26     34     57    122     83
D280V8, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            10              50
  CLUS_2             5              45
  CLUS_3            23              26
  CLUS_4             6              34
  CLUS_5             6              57
  CLUS_6             3             122
  CLUS_7            16              83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED       27     11      6     24
  GPR98 WILD-TYPE    103     67     62    172
D280V9, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1            27             103
  CLUS_2            11              67
  CLUS_3             6              62
  CLUS_4            24             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR98 MUTATED        9     11      3      9     18      2      8      5
  GPR98 WILD-TYPE     31     51     25     71     51     46     35     23
                 vv
clus              CLUS_9
  GPR98 MUTATED        3
  GPR98 WILD-TYPE     71
D280V10, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             9              31
  CLUS_2            11              51
  CLUS_3             3              25
  CLUS_4             9              71
  CLUS_5            18              51
  CLUS_6             2              46
  CLUS_7             8              35
  CLUS_8             5              23
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED        3      4      3      6
  GPR98 WILD-TYPE     30     27     24     13
D280V11, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              27
  CLUS_3             3              24
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR98 MUTATED        9      0      6      1
  GPR98 WILD-TYPE     45     10     18     21
D280V12, multiclass
        clus
vv       GPR98 MUTATED GPR98 WILD-TYPE
  CLUS_1             9              45
  CLUS_2             0              10
  CLUS_3             6              18
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(281) Variable = MAGEA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA1 MUTATED        0      0      0      0
  MAGEA1 WILD-TYPE     46     58     64     43
D281V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA1 MUTATED        0      0      0
  MAGEA1 WILD-TYPE     51     83     77
D281V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA1 MUTATED        6      4      3      1
  MAGEA1 WILD-TYPE    172    179     98     19
D281V3, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA1 MUTATED        8      3      3
  MAGEA1 WILD-TYPE     79     77     97
D281V4, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA1 MUTATED        1      4      7
  MAGEA1 WILD-TYPE     88    156    131
D281V5, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA1 MUTATED        9      3      0
  MAGEA1 WILD-TYPE    173    130     72
D281V6, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA1 MUTATED        3      4      6      1
  MAGEA1 WILD-TYPE    109     92     86    185
D281V7, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              6               86
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGEA1 MUTATED        1      2      5      2      3      0      1
  MAGEA1 WILD-TYPE     59     48     44     38     60    125     98
D281V8, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA1 MUTATED        7      4      0      3
  MAGEA1 WILD-TYPE    123     74     68    193
D281V9, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAGEA1 MUTATED        2      4      0      1      2      1      3      0
  MAGEA1 WILD-TYPE     38     58     28     79     67     47     40     28
                  vv
clus               CLUS_9
  MAGEA1 MUTATED        1
  MAGEA1 WILD-TYPE     73
D281V10, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA1 MUTATED        1      4      0      2
  MAGEA1 WILD-TYPE     32     27     27     17
D281V11, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              4               27
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA1 MUTATED        5      1      1      0
  MAGEA1 WILD-TYPE     49      9     23     22
D281V12, multiclass
        clus
vv       MAGEA1 MUTATED MAGEA1 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(282) Variable = HNF1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      0      1      1
  HNF1B WILD-TYPE     46     58     63     42
D282V1, multiclass
[1] "Remove cluster labels:" "HNF1B MUTATED"         
clus
  HNF1B MUTATED HNF1B WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AY-4071 
"HNF1B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        0      0      2
  HNF1B WILD-TYPE     51     83     75
D282V2, multiclass
[1] "Remove cluster labels:" "HNF1B MUTATED"         
clus
  HNF1B MUTATED HNF1B WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" "HNF1B WILD-TYPE" 
     TCGA-AY-4071 
"HNF1B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        5      4      1      0
  HNF1B WILD-TYPE    173    179    100     20
D282V3, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             5             173
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        1      1      6
  HNF1B WILD-TYPE     86     79     94
D282V4, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        3      4      2
  HNF1B WILD-TYPE     86    156    136
D282V5, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        4      4      1
  HNF1B WILD-TYPE    178    129     71
D282V6, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        2      4      2      2
  HNF1B WILD-TYPE    110     92     90    184
D282V7, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNF1B MUTATED        3      2      3      0      1      1      0
  HNF1B WILD-TYPE     57     48     46     40     62    124     99
D282V8, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        5      3      0      2
  HNF1B WILD-TYPE    125     75     68    194
D282V9, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HNF1B MUTATED        2      2      0      1      3      1      1      0
  HNF1B WILD-TYPE     38     60     28     79     66     47     42     28
                 vv
clus              CLUS_9
  HNF1B MUTATED        0
  HNF1B WILD-TYPE     74
D282V10, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        1      0      1      1
  HNF1B WILD-TYPE     32     31     26     18
D282V11, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        1      0      2      0
  HNF1B WILD-TYPE     53     10     22     22
D282V12, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(283) Variable = C19ORF66 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF66 MUTATED        1      0      0      0
  C19ORF66 WILD-TYPE     45     58     64     43
D283V1, multiclass
[1] "Remove cluster labels:" "C19ORF66 MUTATED"      
clus
  C19ORF66 MUTATED C19ORF66 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3950 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF66 MUTATED        1      0      0
  C19ORF66 WILD-TYPE     50     83     77
D283V2, multiclass
[1] "Remove cluster labels:" "C19ORF66 MUTATED"      
clus
  C19ORF66 MUTATED C19ORF66 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3950 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF66 MUTATED        4      0      0      0
  C19ORF66 WILD-TYPE    174    183    101     20
D283V3, multiclass
        clus
vv       C19ORF66 MUTATED C19ORF66 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF66 MUTATED        0      0      3
  C19ORF66 WILD-TYPE     87     80     97
D283V4, multiclass
        clus
vv       C19ORF66 MUTATED C19ORF66 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF66 MUTATED        1      0      1
  C19ORF66 WILD-TYPE     88    160    137
D283V5, multiclass
[1] "Remove cluster labels:" "C19ORF66 MUTATED"      
clus
  C19ORF66 MUTATED C19ORF66 WILD-TYPE 
                 2                385 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3510         TCGA-AA-3511         TCGA-AA-3514 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3655 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3672         TCGA-AA-3678 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3688         TCGA-AA-3695 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3697         TCGA-AA-3710 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3712         TCGA-AA-3715         TCGA-AA-3811 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3831 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3844 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3848         TCGA-AA-3850 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3856 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3872         TCGA-AA-3930 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3950         TCGA-AA-3955 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3982 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-A004 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00E         TCGA-AA-A00F 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00Q         TCGA-AA-A00R 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01I         TCGA-AA-A01K 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01P         TCGA-AA-A01Q         TCGA-AA-A01R 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01S         TCGA-AA-A01T         TCGA-AA-A01V 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01X         TCGA-AA-A022         TCGA-AA-A024 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02K         TCGA-AA-A02O 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AD-5900         TCGA-AD-6548 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6899         TCGA-AD-6965 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-3400         TCGA-AF-3913 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-5654         TCGA-AF-6136         TCGA-AF-6655 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3574         TCGA-AG-3578 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3612         TCGA-AG-3727 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3742         TCGA-AG-3878 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3885 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01W         TCGA-AG-A01Y 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A026         TCGA-AG-A02G 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A036 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-6004 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AY-5543         TCGA-AY-6196         TCGA-AY-6197 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AY-6386         TCGA-AZ-4315         TCGA-AZ-4323 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-4682         TCGA-AZ-5407 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6599         TCGA-AZ-6600 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-6606         TCGA-AZ-6607         TCGA-AZ-6608 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CA-5254         TCGA-CA-5255         TCGA-CA-5796 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CA-5797         TCGA-CA-6715         TCGA-CA-6716 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CA-6717         TCGA-CA-6718         TCGA-CA-6719 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CK-5914         TCGA-CK-5916 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CK-6746         TCGA-CK-6747         TCGA-CK-6748 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CK-6751         TCGA-CL-5918         TCGA-CM-4743 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-4744         TCGA-CM-4746         TCGA-CM-4747 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-4752         TCGA-CM-5341         TCGA-CM-5344 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-5348         TCGA-CM-5349         TCGA-CM-5860 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-5861         TCGA-CM-5862         TCGA-CM-5863 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-5864         TCGA-CM-5868         TCGA-CM-6161 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6162         TCGA-CM-6163         TCGA-CM-6164 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6165         TCGA-CM-6166         TCGA-CM-6167 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6168         TCGA-CM-6169         TCGA-CM-6170 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6171         TCGA-CM-6172         TCGA-CM-6674 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6675         TCGA-CM-6676         TCGA-CM-6677 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-5538         TCGA-D5-5539         TCGA-D5-5540 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-5541         TCGA-D5-6529         TCGA-D5-6532 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6535 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6537         TCGA-D5-6538 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6539         TCGA-D5-6541         TCGA-D5-6898 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6930         TCGA-D5-6931 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6932         TCGA-DC-5337         TCGA-DC-5869 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XF 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A28C 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A28E         TCGA-DM-A28F         TCGA-DM-A28G 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G5-6641 
"C19ORF66 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF66 MUTATED        1      0      1
  C19ORF66 WILD-TYPE    181    133     71
D283V6, multiclass
[1] "Remove cluster labels:" "C19ORF66 MUTATED"      
clus
  C19ORF66 MUTATED C19ORF66 WILD-TYPE 
                 2                385 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3510         TCGA-AA-3511         TCGA-AA-3514 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3655 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3672         TCGA-AA-3678 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3688         TCGA-AA-3695 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3697         TCGA-AA-3710 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3712         TCGA-AA-3715         TCGA-AA-3811 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3831 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3844 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3848         TCGA-AA-3850 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3856 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3872         TCGA-AA-3930 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3950         TCGA-AA-3955 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3982 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-A004 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00E         TCGA-AA-A00F 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00Q         TCGA-AA-A00R 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01I         TCGA-AA-A01K 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01P         TCGA-AA-A01Q         TCGA-AA-A01R 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01S         TCGA-AA-A01T         TCGA-AA-A01V 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A01X         TCGA-AA-A022         TCGA-AA-A024 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02K         TCGA-AA-A02O 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AD-5900         TCGA-AD-6548 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6899         TCGA-AD-6965 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-3400         TCGA-AF-3913 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-5654         TCGA-AF-6136         TCGA-AF-6655 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3574         TCGA-AG-3578 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3612         TCGA-AG-3727 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3742         TCGA-AG-3878 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3885 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01W         TCGA-AG-A01Y 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A026         TCGA-AG-A02G 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A036 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-6004 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AY-5543         TCGA-AY-6196         TCGA-AY-6197 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AY-6386         TCGA-AZ-4315         TCGA-AZ-4323 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-4682         TCGA-AZ-5407 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6599         TCGA-AZ-6600 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-AZ-6606         TCGA-AZ-6607         TCGA-AZ-6608 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CA-5254         TCGA-CA-5255         TCGA-CA-5796 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CA-5797         TCGA-CA-6715         TCGA-CA-6716 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CA-6717         TCGA-CA-6718         TCGA-CA-6719 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CK-5914         TCGA-CK-5916 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CK-6746         TCGA-CK-6747         TCGA-CK-6748 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CK-6751         TCGA-CL-5918         TCGA-CM-4743 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-4744         TCGA-CM-4746         TCGA-CM-4747 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-4752         TCGA-CM-5341         TCGA-CM-5344 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-5348         TCGA-CM-5349         TCGA-CM-5860 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-5861         TCGA-CM-5862         TCGA-CM-5863 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-5864         TCGA-CM-5868         TCGA-CM-6161 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6162         TCGA-CM-6163         TCGA-CM-6164 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6165         TCGA-CM-6166         TCGA-CM-6167 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6168         TCGA-CM-6169         TCGA-CM-6170 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6171         TCGA-CM-6172         TCGA-CM-6674 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6675         TCGA-CM-6676         TCGA-CM-6677 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-5538         TCGA-D5-5539         TCGA-D5-5540 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-5541         TCGA-D5-6529         TCGA-D5-6532 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6535 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6537         TCGA-D5-6538 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6539         TCGA-D5-6541         TCGA-D5-6898 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6930         TCGA-D5-6931 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-D5-6932         TCGA-DC-5337         TCGA-DC-5869 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XF 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A28C 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DM-A28E         TCGA-DM-A28F         TCGA-DM-A28G 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" "C19ORF66 WILD-TYPE" 
        TCGA-G5-6641 
"C19ORF66 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF66 MUTATED        0      2      1      1
  C19ORF66 WILD-TYPE    112     94     91    185
D283V7, multiclass
        clus
vv       C19ORF66 MUTATED C19ORF66 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                1                 91
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C19ORF66 MUTATED        0      0      2      1      0      0      1
  C19ORF66 WILD-TYPE     60     50     47     39     63    125     98
D283V8, multiclass
        clus
vv       C19ORF66 MUTATED C19ORF66 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                2                 47
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF66 MUTATED        3      0      0      1
  C19ORF66 WILD-TYPE    127     78     68    195
D283V9, multiclass
        clus
vv       C19ORF66 MUTATED C19ORF66 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C19ORF66 MUTATED        1      0      0      0      2      0      0      1
  C19ORF66 WILD-TYPE     39     62     28     80     67     48     43     27
                    vv
clus                 CLUS_9
  C19ORF66 MUTATED        0
  C19ORF66 WILD-TYPE     74
D283V10, multiclass
        clus
vv       C19ORF66 MUTATED C19ORF66 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                0                 62
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF66 MUTATED        0      0      0      0
  C19ORF66 WILD-TYPE     33     31     27     19
D283V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF66 MUTATED        0      0      0      0
  C19ORF66 WILD-TYPE     54     10     24     22
D283V12, multiclass

Clustering(284) Variable = INPP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP1 MUTATED        1      0      0      1
  INPP1 WILD-TYPE     45     58     64     42
D284V1, multiclass
[1] "Remove cluster labels:" "INPP1 MUTATED"         
clus
  INPP1 MUTATED INPP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AY-4071 
"INPP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INPP1 MUTATED        0      2      0
  INPP1 WILD-TYPE     51     81     77
D284V2, multiclass
[1] "Remove cluster labels:" "INPP1 MUTATED"         
clus
  INPP1 MUTATED INPP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AY-4071 
"INPP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP1 MUTATED        3      4      0      1
  INPP1 WILD-TYPE    175    179    101     19
D284V3, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INPP1 MUTATED        1      3      2
  INPP1 WILD-TYPE     86     77     98
D284V4, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INPP1 MUTATED        1      3      3
  INPP1 WILD-TYPE     88    157    135
D284V5, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INPP1 MUTATED        4      2      1
  INPP1 WILD-TYPE    178    131     71
D284V6, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP1 MUTATED        4      0      2      2
  INPP1 WILD-TYPE    108     96     90    184
D284V7, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             0              96
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INPP1 MUTATED        2      0      2      2      0      1      1
  INPP1 WILD-TYPE     58     50     47     38     63    124     98
D284V8, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP1 MUTATED        4      1      1      2
  INPP1 WILD-TYPE    126     77     67    194
D284V9, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INPP1 MUTATED        2      1      1      0      1      1      1      1
  INPP1 WILD-TYPE     38     61     27     80     68     47     42     27
                 vv
clus              CLUS_9
  INPP1 MUTATED        0
  INPP1 WILD-TYPE     74
D284V10, multiclass
        clus
vv       INPP1 MUTATED INPP1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP1 MUTATED        0      0      0      2
  INPP1 WILD-TYPE     33     31     27     17
D284V11, multiclass
[1] "Remove cluster labels:" "INPP1 MUTATED"         
clus
  INPP1 MUTATED INPP1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP1 MUTATED        2      0      0      0
  INPP1 WILD-TYPE     52     10     24     22
D284V12, multiclass
[1] "Remove cluster labels:" "INPP1 MUTATED"         
clus
  INPP1 MUTATED INPP1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" "INPP1 WILD-TYPE" 

Clustering(285) Variable = TRIM24 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM24 MUTATED        3      1      0      2
  TRIM24 WILD-TYPE     43     57     64     41
D285V1, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM24 MUTATED        3      2      1
  TRIM24 WILD-TYPE     48     81     76
D285V2, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM24 MUTATED        9      7      2      2
  TRIM24 WILD-TYPE    169    176     99     18
D285V3, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              7              176
  CLUS_3              2               99
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM24 MUTATED        4      3      7
  TRIM24 WILD-TYPE     83     77     93
D285V4, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM24 MUTATED        2      9      7
  TRIM24 WILD-TYPE     87    151    131
D285V5, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              9              151
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM24 MUTATED       11      6      1
  TRIM24 WILD-TYPE    171    127     71
D285V6, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM24 MUTATED        5      5      5      5
  TRIM24 WILD-TYPE    107     91     87    181
D285V7, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM24 MUTATED        3      3      4      2      3      2      3
  TRIM24 WILD-TYPE     57     47     45     38     60    123     96
D285V8, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM24 MUTATED        7      5      2      4
  TRIM24 WILD-TYPE    123     73     66    192
D285V9, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM24 MUTATED        2      5      1      2      3      0      4      1
  TRIM24 WILD-TYPE     38     57     27     78     66     48     39     27
                  vv
clus               CLUS_9
  TRIM24 MUTATED        0
  TRIM24 WILD-TYPE     74
D285V10, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              4               39
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM24 MUTATED        3      2      1      4
  TRIM24 WILD-TYPE     30     29     26     15
D285V11, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM24 MUTATED        7      0      1      2
  TRIM24 WILD-TYPE     47     10     23     20
D285V12, multiclass
        clus
vv       TRIM24 MUTATED TRIM24 WILD-TYPE
  CLUS_1              7               47
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(286) Variable = C12ORF40 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        1      0      0      2
  C12ORF40 WILD-TYPE     45     58     64     41
D286V1, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF40 MUTATED        2      0      1
  C12ORF40 WILD-TYPE     49     83     76
D286V2, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED       14      5      4      1
  C12ORF40 WILD-TYPE    164    178     97     19
D286V3, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                5                178
  CLUS_3                4                 97
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF40 MUTATED        8      4      9
  C12ORF40 WILD-TYPE     79     76     91
D286V4, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                4                 76
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF40 MUTATED        5      6      9
  C12ORF40 WILD-TYPE     84    154    129
D286V5, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                5                 84
  CLUS_2                6                154
  CLUS_3                9                129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF40 MUTATED       11      6      3
  C12ORF40 WILD-TYPE    171    127     69
D286V6, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1               11                171
  CLUS_2                6                127
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        5     12      5      2
  C12ORF40 WILD-TYPE    107     84     87    184
D286V7, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                5                107
  CLUS_2               12                 84
  CLUS_3                5                 87
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C12ORF40 MUTATED        3      1      8      6      4      0      2
  C12ORF40 WILD-TYPE     57     49     41     34     59    125     97
D286V8, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                1                 49
  CLUS_3                8                 41
  CLUS_4                6                 34
  CLUS_5                4                 59
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED       14      3      2      4
  C12ORF40 WILD-TYPE    116     75     66    192
D286V9, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1               14                116
  CLUS_2                3                 75
  CLUS_3                2                 66
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C12ORF40 MUTATED        5      3      1      0      8      1      4      1
  C12ORF40 WILD-TYPE     35     59     27     80     61     47     39     27
                    vv
clus                 CLUS_9
  C12ORF40 MUTATED        0
  C12ORF40 WILD-TYPE     74
D286V10, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                8                 61
  CLUS_6                1                 47
  CLUS_7                4                 39
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        2      1      1      2
  C12ORF40 WILD-TYPE     31     30     26     17
D286V11, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        2      0      3      1
  C12ORF40 WILD-TYPE     52     10     21     21
D286V12, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                3                 21
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(287) Variable = SNAI2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAI2 MUTATED        0      0      0      2
  SNAI2 WILD-TYPE     46     58     64     41
D287V1, multiclass
[1] "Remove cluster labels:" "SNAI2 MUTATED"         
clus
  SNAI2 MUTATED SNAI2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AY-4071 
"SNAI2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNAI2 MUTATED        1      0      1
  SNAI2 WILD-TYPE     50     83     76
D287V2, multiclass
[1] "Remove cluster labels:" "SNAI2 MUTATED"         
clus
  SNAI2 MUTATED SNAI2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AY-4071 
"SNAI2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAI2 MUTATED        7      2      2      0
  SNAI2 WILD-TYPE    171    181     99     20
D287V3, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNAI2 MUTATED        3      1      5
  SNAI2 WILD-TYPE     84     79     95
D287V4, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNAI2 MUTATED        3      0      6
  SNAI2 WILD-TYPE     86    160    132
D287V5, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0             160
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNAI2 MUTATED        7      1      1
  SNAI2 WILD-TYPE    175    132     71
D287V6, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAI2 MUTATED        0      6      2      3
  SNAI2 WILD-TYPE    112     90     90    183
D287V7, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNAI2 MUTATED        0      3      2      1      2      1      2
  SNAI2 WILD-TYPE     60     47     47     39     61    124     97
D287V8, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAI2 MUTATED        5      2      1      2
  SNAI2 WILD-TYPE    125     76     67    194
D287V9, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SNAI2 MUTATED        2      2      1      2      2      0      1      0
  SNAI2 WILD-TYPE     38     60     27     78     67     48     42     28
                 vv
clus              CLUS_9
  SNAI2 MUTATED        0
  SNAI2 WILD-TYPE     74
D287V10, multiclass
        clus
vv       SNAI2 MUTATED SNAI2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAI2 MUTATED        0      1      1      0
  SNAI2 WILD-TYPE     33     30     26     19
D287V11, multiclass
[1] "Remove cluster labels:" "SNAI2 MUTATED"         
clus
  SNAI2 MUTATED SNAI2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CL-5918 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAI2 MUTATED        1      0      1      0
  SNAI2 WILD-TYPE     53     10     23     22
D287V12, multiclass
[1] "Remove cluster labels:" "SNAI2 MUTATED"         
clus
  SNAI2 MUTATED SNAI2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CL-5918 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" "SNAI2 WILD-TYPE" 

Clustering(288) Variable = DDX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        1      0      0      1
  DDX5 WILD-TYPE     45     58     64     42
D288V1, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AY-4071 
"DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        2      0      0
  DDX5 WILD-TYPE     49     83     77
D288V2, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AY-4071 
"DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        5      1      2      1
  DDX5 WILD-TYPE    173    182     99     19
D288V3, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        2      1      4
  DDX5 WILD-TYPE     85     79     96
D288V4, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        2      0      5
  DDX5 WILD-TYPE     87    160    133
D288V5, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            0            160
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDX5 MUTATED        5      1      1
  DDX5 WILD-TYPE    177    132     71
D288V6, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        1      5      1      2
  DDX5 WILD-TYPE    111     91     91    184
D288V7, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX5 MUTATED        1      3      1      1      1      0      2
  DDX5 WILD-TYPE     59     47     48     39     62    125     97
D288V8, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        5      1      0      2
  DDX5 WILD-TYPE    125     77     68    194
D288V9, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DDX5 MUTATED        1      1      1      2      2      1      0      0      0
  DDX5 WILD-TYPE     39     61     27     78     67     47     43     28     74
D288V10, multiclass
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      0      0      1
  DDX5 WILD-TYPE     33     31     27     18
D288V11, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6534     TCGA-D5-6536 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-G5-6641 
"DDX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX5 MUTATED        0      0      0      1
  DDX5 WILD-TYPE     54     10     24     21
D288V12, multiclass
[1] "Remove cluster labels:" "DDX5 MUTATED"          
clus
  DDX5 MUTATED DDX5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6534     TCGA-D5-6536 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-G5-6641 
"DDX5 WILD-TYPE" 

Clustering(289) Variable = PTPDC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        1      2      0      1
  PTPDC1 WILD-TYPE     45     56     64     42
D289V1, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        1      2      1
  PTPDC1 WILD-TYPE     50     81     76
D289V2, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        7      2      1      0
  PTPDC1 WILD-TYPE    171    181    100     20
D289V3, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        2      0      4
  PTPDC1 WILD-TYPE     85     80     96
D289V4, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        1      4      4
  PTPDC1 WILD-TYPE     88    156    134
D289V5, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        5      3      1
  PTPDC1 WILD-TYPE    177    130     71
D289V6, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        0      4      2      4
  PTPDC1 WILD-TYPE    112     92     90    182
D289V7, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPDC1 MUTATED        1      0      6      0      0      2      1
  PTPDC1 WILD-TYPE     59     50     43     40     63    123     98
D289V8, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        4      1      1      4
  PTPDC1 WILD-TYPE    126     77     67    192
D289V9, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPDC1 MUTATED        0      2      0      1      5      0      1      0
  PTPDC1 WILD-TYPE     40     60     28     79     64     48     42     28
                  vv
clus               CLUS_9
  PTPDC1 MUTATED        1
  PTPDC1 WILD-TYPE     73
D289V10, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        0      0      0      1
  PTPDC1 WILD-TYPE     33     31     27     18
D289V11, multiclass
[1] "Remove cluster labels:" "PTPDC1 MUTATED"        
clus
  PTPDC1 MUTATED PTPDC1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-G5-6641 
"PTPDC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        0      0      1      0
  PTPDC1 WILD-TYPE     54     10     23     22
D289V12, multiclass
[1] "Remove cluster labels:" "PTPDC1 MUTATED"        
clus
  PTPDC1 MUTATED PTPDC1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" "PTPDC1 WILD-TYPE" 
      TCGA-G5-6641 
"PTPDC1 WILD-TYPE" 

Clustering(290) Variable = BAG4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        1      0      0      1
  BAG4 WILD-TYPE     45     58     64     42
D290V1, multiclass
[1] "Remove cluster labels:" "BAG4 MUTATED"          
clus
  BAG4 MUTATED BAG4 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979     TCGA-AA-3980 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AY-4071 
"BAG4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG4 MUTATED        2      0      0
  BAG4 WILD-TYPE     49     83     77
D290V2, multiclass
[1] "Remove cluster labels:" "BAG4 MUTATED"          
clus
  BAG4 MUTATED BAG4 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979     TCGA-AA-3980 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" "BAG4 WILD-TYPE" 
    TCGA-AY-4071 
"BAG4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        6      0      1      1
  BAG4 WILD-TYPE    172    183    100     19
D290V3, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG4 MUTATED        1      1      4
  BAG4 WILD-TYPE     86     79     96
D290V4, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG4 MUTATED        1      2      2
  BAG4 WILD-TYPE     88    158    136
D290V5, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG4 MUTATED        3      2      0
  BAG4 WILD-TYPE    179    131     72
D290V6, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        1      4      1      2
  BAG4 WILD-TYPE    111     92     91    184
D290V7, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAG4 MUTATED        0      2      3      0      1      0      2
  BAG4 WILD-TYPE     60     48     46     40     62    125     97
D290V8, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        4      1      0      3
  BAG4 WILD-TYPE    126     77     68    193
D290V9, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BAG4 MUTATED        2      1      0      1      4      0      0      0      0
  BAG4 WILD-TYPE     38     61     28     79     65     48     43     28     74
D290V10, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        0      0      0      0
  BAG4 WILD-TYPE     33     31     27     19
D290V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        0      0      0      0
  BAG4 WILD-TYPE     54     10     24     22
D290V12, multiclass

Clustering(291) Variable = BAZ1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ1B MUTATED        4      0      0      2
  BAZ1B WILD-TYPE     42     58     64     41
D291V1, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ1B MUTATED        4      1      1
  BAZ1B WILD-TYPE     47     82     76
D291V2, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ1B MUTATED       18      4      5      0
  BAZ1B WILD-TYPE    160    179     96     20
D291V3, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1            18             160
  CLUS_2             4             179
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ1B MUTATED        8      5      8
  BAZ1B WILD-TYPE     79     75     92
D291V4, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             8              79
  CLUS_2             5              75
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ1B MUTATED        1      6     15
  BAZ1B WILD-TYPE     88    154    123
D291V5, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ1B MUTATED       13      6      3
  BAZ1B WILD-TYPE    169    127     69
D291V6, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1            13             169
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ1B MUTATED        2      9     10      6
  BAZ1B WILD-TYPE    110     87     82    180
D291V7, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             9              87
  CLUS_3            10              82
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAZ1B MUTATED        2      3      9      3      5      1      4
  BAZ1B WILD-TYPE     58     47     40     37     58    124     95
D291V8, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             3              37
  CLUS_5             5              58
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ1B MUTATED       10      7      3      5
  BAZ1B WILD-TYPE    120     71     65    191
D291V9, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1            10             120
  CLUS_2             7              71
  CLUS_3             3              65
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BAZ1B MUTATED        2      9      0      3      8      0      3      0
  BAZ1B WILD-TYPE     38     53     28     77     61     48     40     28
                 vv
clus              CLUS_9
  BAZ1B MUTATED        0
  BAZ1B WILD-TYPE     74
D291V10, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             2              38
  CLUS_2             9              53
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ1B MUTATED        0      0      2      4
  BAZ1B WILD-TYPE     33     31     25     15
D291V11, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ1B MUTATED        3      1      2      0
  BAZ1B WILD-TYPE     51      9     22     22
D291V12, multiclass
        clus
vv       BAZ1B MUTATED BAZ1B WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(292) Variable = PAQR5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR5 MUTATED        0      0      0      0
  PAQR5 WILD-TYPE     46     58     64     43
D292V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAQR5 MUTATED        0      0      0
  PAQR5 WILD-TYPE     51     83     77
D292V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR5 MUTATED        3      4      1      0
  PAQR5 WILD-TYPE    175    179    100     20
D292V3, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAQR5 MUTATED        1      2      5
  PAQR5 WILD-TYPE     86     78     95
D292V4, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAQR5 MUTATED        0      2      2
  PAQR5 WILD-TYPE     89    158    136
D292V5, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAQR5 MUTATED        2      2      0
  PAQR5 WILD-TYPE    180    131     72
D292V6, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR5 MUTATED        2      3      3      0
  PAQR5 WILD-TYPE    110     93     89    186
D292V7, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAQR5 MUTATED        1      3      3      0      1      0      0
  PAQR5 WILD-TYPE     59     47     46     40     62    125     99
D292V8, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR5 MUTATED        7      1      0      0
  PAQR5 WILD-TYPE    123     77     68    196
D292V9, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PAQR5 MUTATED        2      1      1      1      2      0      1      0
  PAQR5 WILD-TYPE     38     61     27     79     67     48     42     28
                 vv
clus              CLUS_9
  PAQR5 MUTATED        0
  PAQR5 WILD-TYPE     74
D292V10, multiclass
        clus
vv       PAQR5 MUTATED PAQR5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR5 MUTATED        0      0      0      0
  PAQR5 WILD-TYPE     33     31     27     19
D292V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR5 MUTATED        0      0      0      0
  PAQR5 WILD-TYPE     54     10     24     22
D292V12, multiclass

Clustering(293) Variable = KDM3B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        5      1      0      4
  KDM3B WILD-TYPE     41     57     64     39
D293V1, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             5              41
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED        6      3      1
  KDM3B WILD-TYPE     45     80     76
D293V2, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             6              45
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED       20      6      7      1
  KDM3B WILD-TYPE    158    177     94     19
D293V3, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            20             158
  CLUS_2             6             177
  CLUS_3             7              94
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED        9      4     11
  KDM3B WILD-TYPE     78     76     89
D293V4, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             9              78
  CLUS_2             4              76
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED        4     11     12
  KDM3B WILD-TYPE     85    149    126
D293V5, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             4              85
  CLUS_2            11             149
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED       14      9      4
  KDM3B WILD-TYPE    168    124     68
D293V6, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            14             168
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        7      6     10     11
  KDM3B WILD-TYPE    105     90     82    175
D293V7, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             7             105
  CLUS_2             6              90
  CLUS_3            10              82
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM3B MUTATED        4      2      8      3      7      3      7
  KDM3B WILD-TYPE     56     48     41     37     56    122     92
D293V8, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             8              41
  CLUS_4             3              37
  CLUS_5             7              56
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED       11      9      3     10
  KDM3B WILD-TYPE    119     69     65    186
D293V9, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            11             119
  CLUS_2             9              69
  CLUS_3             3              65
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM3B MUTATED        7      7      1      2      8      0      5      2
  KDM3B WILD-TYPE     33     55     27     78     61     48     38     26
                 vv
clus              CLUS_9
  KDM3B MUTATED        1
  KDM3B WILD-TYPE     73
D293V10, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             7              33
  CLUS_2             7              55
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             5              38
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        7      1      1      1
  KDM3B WILD-TYPE     26     30     26     18
D293V11, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             7              26
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        5      1      1      3
  KDM3B WILD-TYPE     49      9     23     19
D293V12, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(294) Variable = FAHD2B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        0      0      0      0
  FAHD2B WILD-TYPE     46     58     64     43
D294V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2B MUTATED        0      0      0
  FAHD2B WILD-TYPE     51     83     77
D294V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        6      0      0      0
  FAHD2B WILD-TYPE    172    183    101     20
D294V3, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2B MUTATED        1      0      5
  FAHD2B WILD-TYPE     86     80     95
D294V4, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2B MUTATED        0      3      3
  FAHD2B WILD-TYPE     89    157    135
D294V5, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2B MUTATED        3      3      0
  FAHD2B WILD-TYPE    179    130     72
D294V6, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        0      3      3      0
  FAHD2B WILD-TYPE    112     93     89    186
D294V7, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAHD2B MUTATED        0      1      5      0      0      0      0
  FAHD2B WILD-TYPE     60     49     44     40     63    125     99
D294V8, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        4      0      0      2
  FAHD2B WILD-TYPE    126     78     68    194
D294V9, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAHD2B MUTATED        1      3      0      1      1      0      0      0
  FAHD2B WILD-TYPE     39     59     28     79     68     48     43     28
                  vv
clus               CLUS_9
  FAHD2B MUTATED        0
  FAHD2B WILD-TYPE     74
D294V10, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        0      0      0      1
  FAHD2B WILD-TYPE     33     31     27     18
D294V11, multiclass
[1] "Remove cluster labels:" "FAHD2B MUTATED"        
clus
  FAHD2B MUTATED FAHD2B WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-G5-6641 
"FAHD2B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        1      0      0      0
  FAHD2B WILD-TYPE     53     10     24     22
D294V12, multiclass
[1] "Remove cluster labels:" "FAHD2B MUTATED"        
clus
  FAHD2B MUTATED FAHD2B WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" "FAHD2B WILD-TYPE" 
      TCGA-G5-6641 
"FAHD2B WILD-TYPE" 

Clustering(295) Variable = ZCCHC6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        2      2      1      3
  ZCCHC6 WILD-TYPE     44     56     63     40
D295V1, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               56
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED        3      3      2
  ZCCHC6 WILD-TYPE     48     80     75
D295V2, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED       14      1      5      0
  ZCCHC6 WILD-TYPE    164    182     96     20
D295V3, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              1              182
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED        2      0     10
  ZCCHC6 WILD-TYPE     85     80     90
D295V4, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED        2      8      5
  ZCCHC6 WILD-TYPE     87    152    133
D295V5, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              8              152
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED        5      9      1
  ZCCHC6 WILD-TYPE    177    124     71
D295V6, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              9              124
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        1     10      2      7
  ZCCHC6 WILD-TYPE    111     86     90    179
D295V7, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1              111
  CLUS_2             10               86
  CLUS_3              2               90
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZCCHC6 MUTATED        1      2      8      0      1      4      4
  ZCCHC6 WILD-TYPE     59     48     41     40     62    121     95
D295V8, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              4              121
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED       10      1      0      8
  ZCCHC6 WILD-TYPE    120     77     68    188
D295V9, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZCCHC6 MUTATED        1      1      1      2     10      1      2      0
  ZCCHC6 WILD-TYPE     39     61     27     78     59     47     41     28
                  vv
clus               CLUS_9
  ZCCHC6 MUTATED        1
  ZCCHC6 WILD-TYPE     73
D295V10, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5             10               59
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        1      0      0      4
  ZCCHC6 WILD-TYPE     32     31     27     15
D295V11, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        2      0      3      0
  ZCCHC6 WILD-TYPE     52     10     21     22
D295V12, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(296) Variable = TNMD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNMD MUTATED        2      1      0      1
  TNMD WILD-TYPE     44     57     64     42
D296V1, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNMD MUTATED        3      1      0
  TNMD WILD-TYPE     48     82     77
D296V2, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNMD MUTATED        8      1      1      0
  TNMD WILD-TYPE    170    182    100     20
D296V3, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNMD MUTATED        2      0      5
  TNMD WILD-TYPE     85     80     95
D296V4, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNMD MUTATED        3      2      4
  TNMD WILD-TYPE     86    158    134
D296V5, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNMD MUTATED        5      2      2
  TNMD WILD-TYPE    177    131     70
D296V6, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNMD MUTATED        0      5      2      4
  TNMD WILD-TYPE    112     91     90    182
D296V7, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNMD MUTATED        0      2      5      0      0      1      3
  TNMD WILD-TYPE     60     48     44     40     63    124     96
D296V8, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNMD MUTATED        4      2      0      5
  TNMD WILD-TYPE    126     76     68    191
D296V9, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TNMD MUTATED        2      2      1      1      4      0      1      0      0
  TNMD WILD-TYPE     38     60     27     79     65     48     42     28     74
D296V10, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNMD MUTATED        1      0      0      2
  TNMD WILD-TYPE     32     31     27     17
D296V11, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNMD MUTATED        2      0      1      0
  TNMD WILD-TYPE     52     10     23     22
D296V12, multiclass
        clus
vv       TNMD MUTATED TNMD WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(297) Variable = RNF182 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF182 MUTATED        1      0      0      2
  RNF182 WILD-TYPE     45     58     64     41
D297V1, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF182 MUTATED        0      1      2
  RNF182 WILD-TYPE     51     82     75
D297V2, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF182 MUTATED       10      4      2      0
  RNF182 WILD-TYPE    168    179     99     20
D297V3, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF182 MUTATED        4      4      6
  RNF182 WILD-TYPE     83     76     94
D297V4, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF182 MUTATED        4      6      5
  RNF182 WILD-TYPE     85    154    133
D297V5, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              6              154
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF182 MUTATED        5      6      4
  RNF182 WILD-TYPE    177    127     68
D297V6, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              6              127
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF182 MUTATED        4      7      3      1
  RNF182 WILD-TYPE    108     89     89    185
D297V7, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              7               89
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF182 MUTATED        3      4      2      3      2      1      0
  RNF182 WILD-TYPE     57     46     47     37     61    124     99
D297V8, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              4               46
  CLUS_3              2               47
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF182 MUTATED        7      1      3      5
  RNF182 WILD-TYPE    123     77     65    191
D297V9, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              1               77
  CLUS_3              3               65
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF182 MUTATED        2      1      1      1      4      2      2      1
  RNF182 WILD-TYPE     38     61     27     79     65     46     41     27
                  vv
clus               CLUS_9
  RNF182 MUTATED        2
  RNF182 WILD-TYPE     72
D297V10, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF182 MUTATED        1      1      2      0
  RNF182 WILD-TYPE     32     30     25     19
D297V11, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF182 MUTATED        1      0      1      2
  RNF182 WILD-TYPE     53     10     23     20
D297V12, multiclass
        clus
vv       RNF182 MUTATED RNF182 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(298) Variable = ERCC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC5 MUTATED        2      0      0      3
  ERCC5 WILD-TYPE     44     58     64     40
D298V1, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC5 MUTATED        3      0      2
  ERCC5 WILD-TYPE     48     83     75
D298V2, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC5 MUTATED       17      5      0      0
  ERCC5 WILD-TYPE    161    178    101     20
D298V3, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC5 MUTATED        3      3     12
  ERCC5 WILD-TYPE     84     77     88
D298V4, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3            12              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC5 MUTATED        3     11      6
  ERCC5 WILD-TYPE     86    149    132
D298V5, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            11             149
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC5 MUTATED        5     11      4
  ERCC5 WILD-TYPE    177    122     68
D298V6, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             5             177
  CLUS_2            11             122
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC5 MUTATED        6      9      3      5
  ERCC5 WILD-TYPE    106     87     89    181
D298V7, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             9              87
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERCC5 MUTATED        6      5      7      0      1      0      4
  ERCC5 WILD-TYPE     54     45     42     40     62    125     95
D298V8, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             5              45
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC5 MUTATED        9      3      3      7
  ERCC5 WILD-TYPE    121     75     65    189
D298V9, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             3              65
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERCC5 MUTATED        2      3      3      3      6      1      3      0
  ERCC5 WILD-TYPE     38     59     25     77     63     47     40     28
                 vv
clus              CLUS_9
  ERCC5 MUTATED        1
  ERCC5 WILD-TYPE     73
D298V10, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC5 MUTATED        3      1      2      1
  ERCC5 WILD-TYPE     30     30     25     18
D298V11, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC5 MUTATED        2      0      3      2
  ERCC5 WILD-TYPE     52     10     21     20
D298V12, multiclass
        clus
vv       ERCC5 MUTATED ERCC5 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(299) Variable = JAK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK3 MUTATED        3      0      1      1
  JAK3 WILD-TYPE     43     58     63     42
D299V1, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK3 MUTATED        4      1      0
  JAK3 WILD-TYPE     47     82     77
D299V2, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK3 MUTATED       14      6      7      1
  JAK3 WILD-TYPE    164    177     94     19
D299V3, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            6            177
  CLUS_3            7             94
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK3 MUTATED        5      7     10
  JAK3 WILD-TYPE     82     73     90
D299V4, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            7             73
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK3 MUTATED        3      8      8
  JAK3 WILD-TYPE     86    152    130
D299V5, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            8            152
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK3 MUTATED       10      6      3
  JAK3 WILD-TYPE    172    127     69
D299V6, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            6            127
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK3 MUTATED       10      8      3      7
  JAK3 WILD-TYPE    102     88     89    179
D299V7, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1           10            102
  CLUS_2            8             88
  CLUS_3            3             89
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JAK3 MUTATED        6      2      6      2      4      2      6
  JAK3 WILD-TYPE     54     48     43     38     59    123     93
D299V8, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK3 MUTATED       13      5      1      8
  JAK3 WILD-TYPE    117     73     67    188
D299V9, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  JAK3 MUTATED        1      5      2      5      8      1      3      1      1
  JAK3 WILD-TYPE     39     57     26     75     61     47     40     27     73
D299V10, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            5             75
  CLUS_5            8             61
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK3 MUTATED        0      2      1      1
  JAK3 WILD-TYPE     33     29     26     18
D299V11, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK3 MUTATED        2      0      2      0
  JAK3 WILD-TYPE     52     10     22     22
D299V12, multiclass
        clus
vv       JAK3 MUTATED JAK3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(300) Variable = HM13 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HM13 MUTATED        0      0      0      1
  HM13 WILD-TYPE     46     58     64     42
D300V1, multiclass
[1] "Remove cluster labels:" "HM13 MUTATED"          
clus
  HM13 MUTATED HM13 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HM13 MUTATED        1      0      0
  HM13 WILD-TYPE     50     83     77
D300V2, multiclass
[1] "Remove cluster labels:" "HM13 MUTATED"          
clus
  HM13 MUTATED HM13 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HM13 MUTATED        3      0      1      1
  HM13 WILD-TYPE    175    183    100     19
D300V3, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HM13 MUTATED        3      1      0
  HM13 WILD-TYPE     84     79    100
D300V4, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HM13 MUTATED        1      1      3
  HM13 WILD-TYPE     88    159    135
D300V5, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HM13 MUTATED        5      0      0
  HM13 WILD-TYPE    177    133     72
D300V6, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            0            133
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HM13 MUTATED        1      1      2      1
  HM13 WILD-TYPE    111     95     90    185
D300V7, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HM13 MUTATED        1      0      1      1      1      0      1
  HM13 WILD-TYPE     59     50     48     39     62    125     98
D300V8, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HM13 MUTATED        2      2      0      1
  HM13 WILD-TYPE    128     76     68    195
D300V9, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HM13 MUTATED        1      3      0      0      1      0      0      0      0
  HM13 WILD-TYPE     39     59     28     80     68     48     43     28     74
D300V10, multiclass
        clus
vv       HM13 MUTATED HM13 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HM13 MUTATED        0      1      0      1
  HM13 WILD-TYPE     33     30     27     18
D300V11, multiclass
[1] "Remove cluster labels:" "HM13 MUTATED"          
clus
  HM13 MUTATED HM13 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6460     TCGA-F4-6569 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HM13 MUTATED        1      1      0      0
  HM13 WILD-TYPE     53      9     24     22
D300V12, multiclass
[1] "Remove cluster labels:" "HM13 MUTATED"          
clus
  HM13 MUTATED HM13 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6460     TCGA-F4-6569 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" "HM13 WILD-TYPE" 

Clustering(301) Variable = RBM10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        2      1      1      4
  RBM10 WILD-TYPE     44     57     63     39
D301V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      1      4
  RBM10 WILD-TYPE     48     82     73
D301V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        9      5      3      1
  RBM10 WILD-TYPE    169    178     98     19
D301V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             5             178
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        1      2      6
  RBM10 WILD-TYPE     86     78     94
D301V4, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        1     10      5
  RBM10 WILD-TYPE     88    150    133
D301V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              88
  CLUS_2            10             150
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        5      8      3
  RBM10 WILD-TYPE    177    125     69
D301V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        3      6      1      7
  RBM10 WILD-TYPE    109     90     91    179
D301V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             1              91
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM10 MUTATED        3      2      4      1      1      1      5
  RBM10 WILD-TYPE     57     48     45     39     62    124     94
D301V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        8      1      2      7
  RBM10 WILD-TYPE    122     77     66    189
D301V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM10 MUTATED        1      2      0      5      6      0      1      1
  RBM10 WILD-TYPE     39     60     28     75     63     48     42     27
                 vv
clus              CLUS_9
  RBM10 MUTATED        2
  RBM10 WILD-TYPE     72
D301V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             5              75
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        0      0      1      1
  RBM10 WILD-TYPE     33     31     26     18
D301V11, multiclass
[1] "Remove cluster labels:" "RBM10 MUTATED"         
clus
  RBM10 MUTATED RBM10 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AF-2687 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        0      0      2      0
  RBM10 WILD-TYPE     54     10     22     22
D301V12, multiclass
[1] "Remove cluster labels:" "RBM10 MUTATED"         
clus
  RBM10 MUTATED RBM10 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AF-2687 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 

Clustering(302) Variable = TRPM7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM7 MUTATED        4      0      0      4
  TRPM7 WILD-TYPE     42     58     64     39
D302V1, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM7 MUTATED        4      2      2
  TRPM7 WILD-TYPE     47     81     75
D302V2, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM7 MUTATED       18      4      5      3
  TRPM7 WILD-TYPE    160    179     96     17
D302V3, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             4             179
  CLUS_3             5              96
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM7 MUTATED       10      4      7
  TRPM7 WILD-TYPE     77     76     93
D302V4, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             4              76
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM7 MUTATED        2      7     14
  TRPM7 WILD-TYPE     87    153    124
D302V5, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             7             153
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM7 MUTATED       15      7      1
  TRPM7 WILD-TYPE    167    126     71
D302V6, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1            15             167
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM7 MUTATED        4      6     10     10
  TRPM7 WILD-TYPE    108     90     82    176
D302V7, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3            10              82
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPM7 MUTATED        7      1      8      2      3      2      7
  TRPM7 WILD-TYPE     53     49     41     38     60    123     92
D302V8, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             1              49
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM7 MUTATED       10      7      2     10
  TRPM7 WILD-TYPE    120     71     66    186
D302V9, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             7              71
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRPM7 MUTATED        1      8      3      6      6      1      2      1
  TRPM7 WILD-TYPE     39     54     25     74     63     47     41     27
                 vv
clus              CLUS_9
  TRPM7 MUTATED        1
  TRPM7 WILD-TYPE     73
D302V10, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             8              54
  CLUS_3             3              25
  CLUS_4             6              74
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM7 MUTATED        2      4      0      4
  TRPM7 WILD-TYPE     31     27     27     15
D302V11, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             4              27
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM7 MUTATED        9      0      1      0
  TRPM7 WILD-TYPE     45     10     23     22
D302V12, multiclass
        clus
vv       TRPM7 MUTATED TRPM7 WILD-TYPE
  CLUS_1             9              45
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(303) Variable = CAMSAP1L1 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMSAP1L1 MUTATED        4      0      0      0
  CAMSAP1L1 WILD-TYPE     42     58     64     43
D303V1, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 4                  42
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 0                  43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  CAMSAP1L1 MUTATED        4      0      0
  CAMSAP1L1 WILD-TYPE     47     83     77
D303V2, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 4                  47
  CLUS_2                 0                  83
  CLUS_3                 0                  77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMSAP1L1 MUTATED       16      3      1      1
  CAMSAP1L1 WILD-TYPE    162    180    100     19
D303V3, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                16                 162
  CLUS_2                 3                 180
  CLUS_3                 1                 100
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  CAMSAP1L1 MUTATED       11      1      8
  CAMSAP1L1 WILD-TYPE     76     79     92
D303V4, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                11                  76
  CLUS_2                 1                  79
  CLUS_3                 8                  92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  CAMSAP1L1 MUTATED        5      6     10
  CAMSAP1L1 WILD-TYPE     84    154    128
D303V5, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 5                  84
  CLUS_2                 6                 154
  CLUS_3                10                 128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  CAMSAP1L1 MUTATED       13      5      3
  CAMSAP1L1 WILD-TYPE    169    128     69
D303V6, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                13                 169
  CLUS_2                 5                 128
  CLUS_3                 3                  69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMSAP1L1 MUTATED        3      7      9      4
  CAMSAP1L1 WILD-TYPE    109     89     83    182
D303V7, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 3                 109
  CLUS_2                 7                  89
  CLUS_3                 9                  83
  CLUS_4                 4                 182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CAMSAP1L1 MUTATED        2      5      8      2      2      0      4
  CAMSAP1L1 WILD-TYPE     58     45     41     38     61    125     95
D303V8, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 2                  58
  CLUS_2                 5                  45
  CLUS_3                 8                  41
  CLUS_4                 2                  38
  CLUS_5                 2                  61
  CLUS_6                 0                 125
  CLUS_7                 4                  95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMSAP1L1 MUTATED       14      2      1      6
  CAMSAP1L1 WILD-TYPE    116     76     67    190
D303V9, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                14                 116
  CLUS_2                 2                  76
  CLUS_3                 1                  67
  CLUS_4                 6                 190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CAMSAP1L1 MUTATED        1      5      2      5      5      2      1      1
  CAMSAP1L1 WILD-TYPE     39     57     26     75     64     46     42     27
                     vv
clus                  CLUS_9
  CAMSAP1L1 MUTATED        1
  CAMSAP1L1 WILD-TYPE     73
D303V10, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 5                  57
  CLUS_3                 2                  26
  CLUS_4                 5                  75
  CLUS_5                 5                  64
  CLUS_6                 2                  46
  CLUS_7                 1                  42
  CLUS_8                 1                  27
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMSAP1L1 MUTATED        1      0      2      2
  CAMSAP1L1 WILD-TYPE     32     31     25     17
D303V11, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 0                  31
  CLUS_3                 2                  25
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMSAP1L1 MUTATED        2      0      2      1
  CAMSAP1L1 WILD-TYPE     52     10     22     21
D303V12, multiclass
        clus
vv       CAMSAP1L1 MUTATED CAMSAP1L1 WILD-TYPE
  CLUS_1                 2                  52
  CLUS_2                 0                  10
  CLUS_3                 2                  22
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(304) Variable = SLC33A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC33A1 MUTATED        1      0      0      1
  SLC33A1 WILD-TYPE     45     58     64     42
D304V1, multiclass
[1] "Remove cluster labels:" "SLC33A1 MUTATED"       
clus
  SLC33A1 MUTATED SLC33A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AY-4071 
"SLC33A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC33A1 MUTATED        0      1      1
  SLC33A1 WILD-TYPE     51     82     76
D304V2, multiclass
[1] "Remove cluster labels:" "SLC33A1 MUTATED"       
clus
  SLC33A1 MUTATED SLC33A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" "SLC33A1 WILD-TYPE" 
       TCGA-AY-4071 
"SLC33A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC33A1 MUTATED        7      1      0      2
  SLC33A1 WILD-TYPE    171    182    101     18
D304V3, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC33A1 MUTATED        3      1      4
  SLC33A1 WILD-TYPE     84     79     96
D304V4, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC33A1 MUTATED        0      4      4
  SLC33A1 WILD-TYPE     89    156    134
D304V5, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC33A1 MUTATED        2      6      0
  SLC33A1 WILD-TYPE    180    127     72
D304V6, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               6               127
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC33A1 MUTATED        1      5      2      2
  SLC33A1 WILD-TYPE    111     91     90    184
D304V7, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC33A1 MUTATED        2      4      0      2      1      1      0
  SLC33A1 WILD-TYPE     58     46     49     38     62    124     99
D304V8, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               4                46
  CLUS_3               0                49
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC33A1 MUTATED        6      1      0      3
  SLC33A1 WILD-TYPE    124     77     68    193
D304V9, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC33A1 MUTATED        3      1      0      2      1      1      1      0
  SLC33A1 WILD-TYPE     37     61     28     78     68     47     42     28
                   vv
clus                CLUS_9
  SLC33A1 MUTATED        1
  SLC33A1 WILD-TYPE     73
D304V10, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC33A1 MUTATED        2      0      0      1
  SLC33A1 WILD-TYPE     31     31     27     18
D304V11, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC33A1 MUTATED        3      0      0      0
  SLC33A1 WILD-TYPE     51     10     24     22
D304V12, multiclass
        clus
vv       SLC33A1 MUTATED SLC33A1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(305) Variable = F2RL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2RL1 MUTATED        0      0      0      1
  F2RL1 WILD-TYPE     46     58     64     42
D305V1, multiclass
[1] "Remove cluster labels:" "F2RL1 MUTATED"         
clus
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  F2RL1 MUTATED        0      0      1
  F2RL1 WILD-TYPE     51     83     76
D305V2, multiclass
[1] "Remove cluster labels:" "F2RL1 MUTATED"         
clus
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2RL1 MUTATED        3      3      0      2
  F2RL1 WILD-TYPE    175    180    101     18
D305V3, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  F2RL1 MUTATED        3      1      3
  F2RL1 WILD-TYPE     84     79     97
D305V4, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  F2RL1 MUTATED        0      1      6
  F2RL1 WILD-TYPE     89    159    132
D305V5, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  F2RL1 MUTATED        4      3      0
  F2RL1 WILD-TYPE    178    130     72
D305V6, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2RL1 MUTATED        3      3      1      1
  F2RL1 WILD-TYPE    109     93     91    185
D305V7, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F2RL1 MUTATED        4      2      1      1      0      0      0
  F2RL1 WILD-TYPE     56     48     48     39     63    125     99
D305V8, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2RL1 MUTATED        2      2      1      3
  F2RL1 WILD-TYPE    128     76     67    193
D305V9, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  F2RL1 MUTATED        1      1      0      0      2      1      2      0
  F2RL1 WILD-TYPE     39     61     28     80     67     47     41     28
                 vv
clus              CLUS_9
  F2RL1 MUTATED        1
  F2RL1 WILD-TYPE     73
D305V10, multiclass
        clus
vv       F2RL1 MUTATED F2RL1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2RL1 MUTATED        2      0      0      0
  F2RL1 WILD-TYPE     31     31     27     19
D305V11, multiclass
[1] "Remove cluster labels:" "F2RL1 MUTATED"         
clus
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2RL1 MUTATED        2      0      0      0
  F2RL1 WILD-TYPE     52     10     24     22
D305V12, multiclass
[1] "Remove cluster labels:" "F2RL1 MUTATED"         
clus
  F2RL1 MUTATED F2RL1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" "F2RL1 WILD-TYPE" 

Clustering(306) Variable = USP26 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        5      0      0      3
  USP26 WILD-TYPE     41     58     64     40
D306V1, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP26 MUTATED        5      2      1
  USP26 WILD-TYPE     46     81     76
D306V2, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED       23      1      0      0
  USP26 WILD-TYPE    155    182    101     20
D306V3, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1            23             155
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP26 MUTATED        7      1      8
  USP26 WILD-TYPE     80     79     92
D306V4, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP26 MUTATED        2      9     10
  USP26 WILD-TYPE     87    151    128
D306V5, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP26 MUTATED       10      8      3
  USP26 WILD-TYPE    172    125     69
D306V6, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        0      9      6      9
  USP26 WILD-TYPE    112     87     86    177
D306V7, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             9              87
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP26 MUTATED        1      3     10      0      1      1      8
  USP26 WILD-TYPE     59     47     39     40     62    124     91
D306V8, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3            10              39
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        8      5      0     10
  USP26 WILD-TYPE    122     73     68    186
D306V9, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP26 MUTATED        2      5      2      2      8      0      1      1
  USP26 WILD-TYPE     38     57     26     78     61     48     42     27
                 vv
clus              CLUS_9
  USP26 MUTATED        2
  USP26 WILD-TYPE     72
D306V10, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        1      0      0      2
  USP26 WILD-TYPE     32     31     27     17
D306V11, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        2      0      1      0
  USP26 WILD-TYPE     52     10     23     22
D306V12, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(307) Variable = WEE1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE1 MUTATED        0      0      0      1
  WEE1 WILD-TYPE     46     58     64     42
D307V1, multiclass
[1] "Remove cluster labels:" "WEE1 MUTATED"          
clus
  WEE1 MUTATED WEE1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE1 MUTATED        1      0      0
  WEE1 WILD-TYPE     50     83     77
D307V2, multiclass
[1] "Remove cluster labels:" "WEE1 MUTATED"          
clus
  WEE1 MUTATED WEE1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE1 MUTATED       10      0      2      0
  WEE1 WILD-TYPE    168    183     99     20
D307V3, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE1 MUTATED        4      1      5
  WEE1 WILD-TYPE     83     79     95
D307V4, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE1 MUTATED        2      7      2
  WEE1 WILD-TYPE     87    153    136
D307V5, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE1 MUTATED        3      7      1
  WEE1 WILD-TYPE    179    126     71
D307V6, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            7            126
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE1 MUTATED        1      6      2      3
  WEE1 WILD-TYPE    111     90     90    183
D307V7, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WEE1 MUTATED        1      3      4      0      1      0      3
  WEE1 WILD-TYPE     59     47     45     40     62    125     96
D307V8, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE1 MUTATED        7      0      1      4
  WEE1 WILD-TYPE    123     78     67    192
D307V9, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WEE1 MUTATED        0      3      1      2      3      0      1      0      2
  WEE1 WILD-TYPE     40     59     27     78     66     48     42     28     72
D307V10, multiclass
        clus
vv       WEE1 MUTATED WEE1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE1 MUTATED        0      0      0      1
  WEE1 WILD-TYPE     33     31     27     18
D307V11, multiclass
[1] "Remove cluster labels:" "WEE1 MUTATED"          
clus
  WEE1 MUTATED WEE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-G5-6641 
"WEE1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE1 MUTATED        0      0      1      0
  WEE1 WILD-TYPE     54     10     23     22
D307V12, multiclass
[1] "Remove cluster labels:" "WEE1 MUTATED"          
clus
  WEE1 MUTATED WEE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" "WEE1 WILD-TYPE" 
    TCGA-G5-6641 
"WEE1 WILD-TYPE" 

Clustering(308) Variable = ERBB2IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        1      0      0      5
  ERBB2IP WILD-TYPE     45     58     64     38
D308V1, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ERBB2IP MUTATED        3      1      2
  ERBB2IP WILD-TYPE     48     82     75
D308V2, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED       14      4      0      0
  ERBB2IP WILD-TYPE    164    179    101     20
D308V3, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1              14               164
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ERBB2IP MUTATED        6      0      6
  ERBB2IP WILD-TYPE     81     80     94
D308V4, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               6                81
  CLUS_2               0                80
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ERBB2IP MUTATED        2      5      9
  ERBB2IP WILD-TYPE     87    155    129
D308V5, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               2                87
  CLUS_2               5               155
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ERBB2IP MUTATED       10      4      2
  ERBB2IP WILD-TYPE    172    129     70
D308V6, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1              10               172
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        0      2      9      7
  ERBB2IP WILD-TYPE    112     94     83    179
D308V7, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               9                83
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERBB2IP MUTATED        3      1      5      0      3      0      6
  ERBB2IP WILD-TYPE     57     49     44     40     60    125     93
D308V8, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        7      3      0      7
  ERBB2IP WILD-TYPE    123     75     68    189
D308V9, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               7               123
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERBB2IP MUTATED        1      5      2      2      4      0      2      0
  ERBB2IP WILD-TYPE     39     57     26     78     65     48     41     28
                   vv
clus                CLUS_9
  ERBB2IP MUTATED        1
  ERBB2IP WILD-TYPE     73
D308V10, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               1                39
  CLUS_2               5                57
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        2      1      0      2
  ERBB2IP WILD-TYPE     31     30     27     17
D308V11, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2IP MUTATED        4      0      1      0
  ERBB2IP WILD-TYPE     50     10     23     22
D308V12, multiclass
        clus
vv       ERBB2IP MUTATED ERBB2IP WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(309) Variable = B4GALNT4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        1      0      0      0
  B4GALNT4 WILD-TYPE     45     58     64     43
D309V1, multiclass
[1] "Remove cluster labels:" "B4GALNT4 MUTATED"      
clus
  B4GALNT4 MUTATED B4GALNT4 WILD-TYPE 
                 1                210 
        TCGA-A6-2674         TCGA-A6-2676         TCGA-A6-2677 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B4GALNT4 MUTATED        1      0      0
  B4GALNT4 WILD-TYPE     50     83     77
D309V2, multiclass
[1] "Remove cluster labels:" "B4GALNT4 MUTATED"      
clus
  B4GALNT4 MUTATED B4GALNT4 WILD-TYPE 
                 1                210 
        TCGA-A6-2674         TCGA-A6-2676         TCGA-A6-2677 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" "B4GALNT4 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED       11      0      0      0
  B4GALNT4 WILD-TYPE    167    183    101     20
D309V3, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1               11                167
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B4GALNT4 MUTATED        5      0      5
  B4GALNT4 WILD-TYPE     82     80     95
D309V4, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                0                 80
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B4GALNT4 MUTATED        0      4      6
  B4GALNT4 WILD-TYPE     89    156    132
D309V5, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                4                156
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B4GALNT4 MUTATED        6      3      1
  B4GALNT4 WILD-TYPE    176    130     71
D309V6, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        0      4      5      2
  B4GALNT4 WILD-TYPE    112     92     87    184
D309V7, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                4                 92
  CLUS_3                5                 87
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B4GALNT4 MUTATED        0      0      9      0      0      0      2
  B4GALNT4 WILD-TYPE     60     50     40     40     63    125     97
D309V8, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                9                 40
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        5      2      0      4
  B4GALNT4 WILD-TYPE    125     76     68    192
D309V9, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  B4GALNT4 MUTATED        0      3      0      1      6      0      0      0
  B4GALNT4 WILD-TYPE     40     59     28     79     63     48     43     28
                    vv
clus                 CLUS_9
  B4GALNT4 MUTATED        1
  B4GALNT4 WILD-TYPE     73
D309V10, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        1      0      0      2
  B4GALNT4 WILD-TYPE     32     31     27     17
D309V11, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        2      0      1      0
  B4GALNT4 WILD-TYPE     52     10     23     22
D309V12, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(310) Variable = NSUN6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN6 MUTATED        0      0      0      2
  NSUN6 WILD-TYPE     46     58     64     41
D310V1, multiclass
[1] "Remove cluster labels:" "NSUN6 MUTATED"         
clus
  NSUN6 MUTATED NSUN6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AY-4071 
"NSUN6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN6 MUTATED        0      1      1
  NSUN6 WILD-TYPE     51     82     76
D310V2, multiclass
[1] "Remove cluster labels:" "NSUN6 MUTATED"         
clus
  NSUN6 MUTATED NSUN6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" "NSUN6 WILD-TYPE" 
     TCGA-AY-4071 
"NSUN6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN6 MUTATED        8      1      0      1
  NSUN6 WILD-TYPE    170    182    101     19
D310V3, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN6 MUTATED        3      1      4
  NSUN6 WILD-TYPE     84     79     96
D310V4, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN6 MUTATED        1      6      3
  NSUN6 WILD-TYPE     88    154    135
D310V5, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN6 MUTATED        5      4      1
  NSUN6 WILD-TYPE    177    129     71
D310V6, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN6 MUTATED        1      2      4      3
  NSUN6 WILD-TYPE    111     94     88    183
D310V7, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NSUN6 MUTATED        2      0      5      0      1      0      2
  NSUN6 WILD-TYPE     58     50     44     40     62    125     97
D310V8, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN6 MUTATED        3      2      1      4
  NSUN6 WILD-TYPE    127     76     67    192
D310V9, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NSUN6 MUTATED        0      4      1      0      3      0      1      0
  NSUN6 WILD-TYPE     40     58     27     80     66     48     42     28
                 vv
clus              CLUS_9
  NSUN6 MUTATED        1
  NSUN6 WILD-TYPE     73
D310V10, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN6 MUTATED        1      1      0      1
  NSUN6 WILD-TYPE     32     30     27     18
D310V11, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN6 MUTATED        3      0      0      0
  NSUN6 WILD-TYPE     51     10     24     22
D310V12, multiclass
        clus
vv       NSUN6 MUTATED NSUN6 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(311) Variable = KDM5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5B MUTATED        6      2      0      2
  KDM5B WILD-TYPE     40     56     64     41
D311V1, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             6              40
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5B MUTATED        5      2      3
  KDM5B WILD-TYPE     46     81     74
D311V2, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5B MUTATED       17      8      3      0
  KDM5B WILD-TYPE    161    175     98     20
D311V3, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1            17             161
  CLUS_2             8             175
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5B MUTATED        5      4     10
  KDM5B WILD-TYPE     82     76     90
D311V4, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4              76
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5B MUTATED        5      9      7
  KDM5B WILD-TYPE     84    151    131
D311V5, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             5              84
  CLUS_2             9             151
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5B MUTATED        8      7      6
  KDM5B WILD-TYPE    174    126     66
D311V6, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             8             174
  CLUS_2             7             126
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5B MUTATED        6      6      5     11
  KDM5B WILD-TYPE    106     90     87    175
D311V7, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             6             106
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM5B MUTATED        4      3      6      1      3      3      8
  KDM5B WILD-TYPE     56     47     43     39     60    122     91
D311V8, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             3             122
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5B MUTATED       10      3      5     10
  KDM5B WILD-TYPE    120     75     63    186
D311V9, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             5              63
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM5B MUTATED        1      2      3      5      7      1      5      2
  KDM5B WILD-TYPE     39     60     25     75     62     47     38     26
                 vv
clus              CLUS_9
  KDM5B MUTATED        2
  KDM5B WILD-TYPE     72
D311V10, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             5              75
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             5              38
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5B MUTATED        2      0      2      3
  KDM5B WILD-TYPE     31     31     25     16
D311V11, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5B MUTATED        3      1      2      1
  KDM5B WILD-TYPE     51      9     22     21
D311V12, multiclass
        clus
vv       KDM5B MUTATED KDM5B WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(312) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       14     15     25     31
  KRAS WILD-TYPE     32     43     39     12
D312V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           14             32
  CLUS_2           15             43
  CLUS_3           25             39
  CLUS_4           31             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       20     19     46
  KRAS WILD-TYPE     31     64     31
D312V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           20             31
  CLUS_2           19             64
  CLUS_3           46             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       94     76     47     10
  KRAS WILD-TYPE     84    107     54     10
D312V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           94             84
  CLUS_2           76            107
  CLUS_3           47             54
  CLUS_4           10             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       46     28     62
  KRAS WILD-TYPE     41     52     38
D312V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           46             41
  CLUS_2           28             52
  CLUS_3           62             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       40     83     65
  KRAS WILD-TYPE     49     77     73
D312V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           40             49
  CLUS_2           83             77
  CLUS_3           65             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       84     71     33
  KRAS WILD-TYPE     98     62     39
D312V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           84             98
  CLUS_2           71             62
  CLUS_3           33             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       46     64     46     72
  KRAS WILD-TYPE     66     32     46    114
D312V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           46             66
  CLUS_2           64             32
  CLUS_3           46             46
  CLUS_4           72            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED       35     32     25     21     25     36     54
  KRAS WILD-TYPE     25     18     24     19     38     89     45
D312V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           35             25
  CLUS_2           32             18
  CLUS_3           25             24
  CLUS_4           21             19
  CLUS_5           25             38
  CLUS_6           36             89
  CLUS_7           54             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       66     41     34     80
  KRAS WILD-TYPE     64     37     34    116
D312V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           66             64
  CLUS_2           41             37
  CLUS_3           34             34
  CLUS_4           80            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KRAS MUTATED       23     29     15     34     31     19     25     13     32
  KRAS WILD-TYPE     17     33     13     46     38     29     18     15     42
D312V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           23             17
  CLUS_2           29             33
  CLUS_3           15             13
  CLUS_4           34             46
  CLUS_5           31             38
  CLUS_6           19             29
  CLUS_7           25             18
  CLUS_8           13             15
  CLUS_9           32             42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       16     11     15     10
  KRAS WILD-TYPE     17     20     12      9
D312V11, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16             17
  CLUS_2           11             20
  CLUS_3           15             12
  CLUS_4           10              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       24      4     14     10
  KRAS WILD-TYPE     30      6     10     12
D312V12, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           24             30
  CLUS_2            4              6
  CLUS_3           14             10
  CLUS_4           10             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(313) Variable = GATA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        1      1      0      1
  GATA3 WILD-TYPE     45     57     64     42
D313V1, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED        2      1      0
  GATA3 WILD-TYPE     49     82     77
D313V2, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED       10      2      2      2
  GATA3 WILD-TYPE    168    181     99     18
D313V3, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED        2      3      8
  GATA3 WILD-TYPE     85     77     92
D313V4, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED        2      8      2
  GATA3 WILD-TYPE     87    152    136
D313V5, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED        4      6      2
  GATA3 WILD-TYPE    178    127     70
D313V6, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        3      6      4      3
  GATA3 WILD-TYPE    109     90     88    183
D313V7, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GATA3 MUTATED        2      4      6      0      1      1      2
  GATA3 WILD-TYPE     58     46     43     40     62    124     97
D313V8, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        6      4      1      5
  GATA3 WILD-TYPE    124     74     67    191
D313V9, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GATA3 MUTATED        4      2      3      1      4      1      0      0
  GATA3 WILD-TYPE     36     60     25     79     65     47     43     28
                 vv
clus              CLUS_9
  GATA3 MUTATED        1
  GATA3 WILD-TYPE     73
D313V10, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        2      0      0      1
  GATA3 WILD-TYPE     31     31     27     18
D313V11, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        3      0      0      0
  GATA3 WILD-TYPE     51     10     24     22
D313V12, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(314) Variable = OVCH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVCH1 MUTATED        3      1      0      4
  OVCH1 WILD-TYPE     43     57     64     39
D314V1, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVCH1 MUTATED        3      2      3
  OVCH1 WILD-TYPE     48     81     74
D314V2, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVCH1 MUTATED       17      6      2      1
  OVCH1 WILD-TYPE    161    177     99     19
D314V3, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             6             177
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVCH1 MUTATED        4      5      9
  OVCH1 WILD-TYPE     83     75     91
D314V4, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             5              75
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVCH1 MUTATED        3      7     10
  OVCH1 WILD-TYPE     86    153    128
D314V5, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVCH1 MUTATED        8     10      2
  OVCH1 WILD-TYPE    174    123     70
D314V6, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVCH1 MUTATED        7      7      5      7
  OVCH1 WILD-TYPE    105     89     87    179
D314V7, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             7             105
  CLUS_2             7              89
  CLUS_3             5              87
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OVCH1 MUTATED        6      1      6      1      5      2      5
  OVCH1 WILD-TYPE     54     49     43     39     58    123     94
D314V8, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             5              58
  CLUS_6             2             123
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVCH1 MUTATED        8      4      4      9
  OVCH1 WILD-TYPE    122     74     64    187
D314V9, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             4              64
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OVCH1 MUTATED        4      3      3      4      8      1      2      0
  OVCH1 WILD-TYPE     36     59     25     76     61     47     41     28
                 vv
clus              CLUS_9
  OVCH1 MUTATED        0
  OVCH1 WILD-TYPE     74
D314V10, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVCH1 MUTATED        2      1      1      1
  OVCH1 WILD-TYPE     31     30     26     18
D314V11, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVCH1 MUTATED        3      1      1      0
  OVCH1 WILD-TYPE     51      9     23     22
D314V12, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(315) Variable = MUC17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        6      3      1      7
  MUC17 WILD-TYPE     40     55     63     36
D315V1, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             3              55
  CLUS_3             1              63
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        7      4      6
  MUC17 WILD-TYPE     44     79     71
D315V2, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             4              79
  CLUS_3             6              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED       31      8     12      2
  MUC17 WILD-TYPE    147    175     89     18
D315V3, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            31             147
  CLUS_2             8             175
  CLUS_3            12              89
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED       10      7     21
  MUC17 WILD-TYPE     77     73     79
D315V4, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             7              73
  CLUS_3            21              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED        4     19     20
  MUC17 WILD-TYPE     85    141    118
D315V5, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            19             141
  CLUS_3            20             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC17 MUTATED       18     15     10
  MUC17 WILD-TYPE    164    118     62
D315V6, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            18             164
  CLUS_2            15             118
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED       10     15     11     19
  MUC17 WILD-TYPE    102     81     81    167
D315V7, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            10             102
  CLUS_2            15              81
  CLUS_3            11              81
  CLUS_4            19             167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC17 MUTATED        8      5     14      7      3      5     13
  MUC17 WILD-TYPE     52     45     35     33     60    120     86
D315V8, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             8              52
  CLUS_2             5              45
  CLUS_3            14              35
  CLUS_4             7              33
  CLUS_5             3              60
  CLUS_6             5             120
  CLUS_7            13              86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED       20      9      5     19
  MUC17 WILD-TYPE    110     69     63    177
D315V9, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1            20             110
  CLUS_2             9              69
  CLUS_3             5              63
  CLUS_4            19             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MUC17 MUTATED        5      8      5      4     15      6      4      0
  MUC17 WILD-TYPE     35     54     23     76     54     42     39     28
                 vv
clus              CLUS_9
  MUC17 MUTATED        6
  MUC17 WILD-TYPE     68
D315V10, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             8              54
  CLUS_3             5              23
  CLUS_4             4              76
  CLUS_5            15              54
  CLUS_6             6              42
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             6              68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        3      3      1      3
  MUC17 WILD-TYPE     30     28     26     16
D315V11, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC17 MUTATED        6      1      3      0
  MUC17 WILD-TYPE     48      9     21     22
D315V12, multiclass
        clus
vv       MUC17 MUTATED MUC17 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(316) Variable = GTF2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2B MUTATED        1      0      0      0
  GTF2B WILD-TYPE     45     58     64     43
D316V1, multiclass
[1] "Remove cluster labels:" "GTF2B MUTATED"         
clus
  GTF2B MUTATED GTF2B WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2B MUTATED        1      0      0
  GTF2B WILD-TYPE     50     83     77
D316V2, multiclass
[1] "Remove cluster labels:" "GTF2B MUTATED"         
clus
  GTF2B MUTATED GTF2B WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GTF2B WILD-TYPE" "GTF2B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2B MUTATED        8      1      3      0
  GTF2B WILD-TYPE    170    182     98     20
D316V3, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2B MUTATED        3      2      6
  GTF2B WILD-TYPE     84     78     94
D316V4, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2B MUTATED        2      4      3
  GTF2B WILD-TYPE     87    156    135
D316V5, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTF2B MUTATED        4      3      2
  GTF2B WILD-TYPE    178    130     70
D316V6, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2B MUTATED        2      5      2      3
  GTF2B WILD-TYPE    110     91     90    183
D316V7, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF2B MUTATED        0      3      3      1      2      1      2
  GTF2B WILD-TYPE     60     47     46     39     61    124     97
D316V8, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2B MUTATED        6      0      1      5
  GTF2B WILD-TYPE    124     78     67    191
D316V9, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GTF2B MUTATED        2      1      1      1      2      0      1      1
  GTF2B WILD-TYPE     38     61     27     79     67     48     42     27
                 vv
clus              CLUS_9
  GTF2B MUTATED        3
  GTF2B WILD-TYPE     71
D316V10, multiclass
        clus
vv       GTF2B MUTATED GTF2B WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2B MUTATED        0      0      0      0
  GTF2B WILD-TYPE     33     31     27     19
D316V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2B MUTATED        0      0      0      0
  GTF2B WILD-TYPE     54     10     24     22
D316V12, multiclass

Clustering(317) Variable = RUNX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        2      0      0      2
  RUNX1 WILD-TYPE     44     58     64     41
D317V1, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED        2      0      2
  RUNX1 WILD-TYPE     49     83     75
D317V2, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED       18     10     10      1
  RUNX1 WILD-TYPE    160    173     91     19
D317V3, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1            18             160
  CLUS_2            10             173
  CLUS_3            10              91
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED       10      8     18
  RUNX1 WILD-TYPE     77     72     82
D317V4, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             8              72
  CLUS_3            18              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED        5     12     17
  RUNX1 WILD-TYPE     84    148    121
D317V5, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            12             148
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX1 MUTATED       18     14      2
  RUNX1 WILD-TYPE    164    119     70
D317V6, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1            18             164
  CLUS_2            14             119
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED       10     19      7      5
  RUNX1 WILD-TYPE    102     77     85    181
D317V7, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1            10             102
  CLUS_2            19              77
  CLUS_3             7              85
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX1 MUTATED        6     10     10      5      4      2      4
  RUNX1 WILD-TYPE     54     40     39     35     59    123     95
D317V8, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2            10              40
  CLUS_3            10              39
  CLUS_4             5              35
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED       25      6      5      5
  RUNX1 WILD-TYPE    105     72     63    191
D317V9, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1            25             105
  CLUS_2             6              72
  CLUS_3             5              63
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RUNX1 MUTATED        6      6      6      5      6      2      5      2
  RUNX1 WILD-TYPE     34     56     22     75     63     46     38     26
                 vv
clus              CLUS_9
  RUNX1 MUTATED        3
  RUNX1 WILD-TYPE     71
D317V10, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             6              34
  CLUS_2             6              56
  CLUS_3             6              22
  CLUS_4             5              75
  CLUS_5             6              63
  CLUS_6             2              46
  CLUS_7             5              38
  CLUS_8             2              26
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        3      2      3      4
  RUNX1 WILD-TYPE     30     29     24     15
D317V11, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             3              24
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX1 MUTATED        6      0      3      3
  RUNX1 WILD-TYPE     48     10     21     19
D317V12, multiclass
        clus
vv       RUNX1 MUTATED RUNX1 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(318) Variable = C9ORF84 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF84 MUTATED        3      0      0      3
  C9ORF84 WILD-TYPE     43     58     64     40
D318V1, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF84 MUTATED        3      2      1
  C9ORF84 WILD-TYPE     48     81     76
D318V2, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF84 MUTATED       17      2      2      0
  C9ORF84 WILD-TYPE    161    181     99     20
D318V3, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1              17               161
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF84 MUTATED        7      3      5
  C9ORF84 WILD-TYPE     80     77     95
D318V4, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF84 MUTATED        6      5      9
  C9ORF84 WILD-TYPE     83    155    129
D318V5, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               6                83
  CLUS_2               5               155
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF84 MUTATED       11      7      2
  C9ORF84 WILD-TYPE    171    126     70
D318V6, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               7               126
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF84 MUTATED        2      6      7      6
  C9ORF84 WILD-TYPE    110     90     85    180
D318V7, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               6                90
  CLUS_3               7                85
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C9ORF84 MUTATED        2      2      5      1      5      1      5
  C9ORF84 WILD-TYPE     58     48     44     39     58    124     94
D318V8, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               5                58
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF84 MUTATED        8      6      0      7
  C9ORF84 WILD-TYPE    122     72     68    189
D318V9, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               6                72
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C9ORF84 MUTATED        4      7      2      2      6      0      0      0
  C9ORF84 WILD-TYPE     36     55     26     78     63     48     43     28
                   vv
clus                CLUS_9
  C9ORF84 MUTATED        0
  C9ORF84 WILD-TYPE     74
D318V10, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               4                36
  CLUS_2               7                55
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF84 MUTATED        1      2      0      3
  C9ORF84 WILD-TYPE     32     29     27     16
D318V11, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF84 MUTATED        5      0      1      0
  C9ORF84 WILD-TYPE     49     10     23     22
D318V12, multiclass
        clus
vv       C9ORF84 MUTATED C9ORF84 WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(319) Variable = NR4A2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A2 MUTATED        2      0      1      3
  NR4A2 WILD-TYPE     44     58     63     40
D319V1, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A2 MUTATED        4      0      2
  NR4A2 WILD-TYPE     47     83     75
D319V2, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A2 MUTATED        9      3      1      0
  NR4A2 WILD-TYPE    169    180    100     20
D319V3, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A2 MUTATED        2      2      3
  NR4A2 WILD-TYPE     85     78     97
D319V4, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A2 MUTATED        1      6      4
  NR4A2 WILD-TYPE     88    154    134
D319V5, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A2 MUTATED        4      6      1
  NR4A2 WILD-TYPE    178    127     71
D319V6, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A2 MUTATED        2      4      1      6
  NR4A2 WILD-TYPE    110     92     91    180
D319V7, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NR4A2 MUTATED        2      1      3      1      1      1      4
  NR4A2 WILD-TYPE     58     49     46     39     62    124     95
D319V8, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A2 MUTATED        4      1      1      5
  NR4A2 WILD-TYPE    126     77     67    191
D319V9, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NR4A2 MUTATED        1      2      0      1      5      1      0      0
  NR4A2 WILD-TYPE     39     60     28     79     64     47     43     28
                 vv
clus              CLUS_9
  NR4A2 MUTATED        1
  NR4A2 WILD-TYPE     73
D319V10, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A2 MUTATED        1      0      1      2
  NR4A2 WILD-TYPE     32     31     26     17
D319V11, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A2 MUTATED        1      1      1      1
  NR4A2 WILD-TYPE     53      9     23     21
D319V12, multiclass
        clus
vv       NR4A2 MUTATED NR4A2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(320) Variable = LATS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        3      1      0      3
  LATS1 WILD-TYPE     43     57     64     40
D320V1, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LATS1 MUTATED        3      2      2
  LATS1 WILD-TYPE     48     81     75
D320V2, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED       18      2      1      0
  LATS1 WILD-TYPE    160    181    100     20
D320V3, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LATS1 MUTATED        4      1      9
  LATS1 WILD-TYPE     83     79     91
D320V4, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LATS1 MUTATED        2      5      9
  LATS1 WILD-TYPE     87    155    129
D320V5, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LATS1 MUTATED        9      6      1
  LATS1 WILD-TYPE    173    127     71
D320V6, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        1      9      5      6
  LATS1 WILD-TYPE    111     87     87    180
D320V7, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             9              87
  CLUS_3             5              87
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LATS1 MUTATED        3      0      8      3      1      2      4
  LATS1 WILD-TYPE     57     50     41     37     62    123     95
D320V8, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             8              41
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        9      2      2      7
  LATS1 WILD-TYPE    121     76     66    189
D320V9, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LATS1 MUTATED        2      3      2      3     10      0      0      0
  LATS1 WILD-TYPE     38     59     26     77     59     48     43     28
                 vv
clus              CLUS_9
  LATS1 MUTATED        0
  LATS1 WILD-TYPE     74
D320V10, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        1      0      2      5
  LATS1 WILD-TYPE     32     31     25     14
D320V11, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LATS1 MUTATED        4      0      4      0
  LATS1 WILD-TYPE     50     10     20     22
D320V12, multiclass
        clus
vv       LATS1 MUTATED LATS1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(321) Variable = THAP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THAP9 MUTATED        2      1      1      5
  THAP9 WILD-TYPE     44     57     63     38
D321V1, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THAP9 MUTATED        4      2      3
  THAP9 WILD-TYPE     47     81     74
D321V2, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THAP9 MUTATED        9      4      3      0
  THAP9 WILD-TYPE    169    179     98     20
D321V3, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THAP9 MUTATED        1      2      4
  THAP9 WILD-TYPE     86     78     96
D321V4, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THAP9 MUTATED        2      7      3
  THAP9 WILD-TYPE     87    153    135
D321V5, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             7             153
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THAP9 MUTATED        3      6      3
  THAP9 WILD-TYPE    179    127     69
D321V6, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THAP9 MUTATED        4      4      0      8
  THAP9 WILD-TYPE    108     92     92    178
D321V7, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             0              92
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THAP9 MUTATED        4      2      1      1      0      2      6
  THAP9 WILD-TYPE     56     48     48     39     63    123     93
D321V8, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THAP9 MUTATED        6      0      1      6
  THAP9 WILD-TYPE    124     78     67    190
D321V9, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  THAP9 MUTATED        2      0      3      1      3      1      1      1
  THAP9 WILD-TYPE     38     62     25     79     66     47     42     27
                 vv
clus              CLUS_9
  THAP9 MUTATED        1
  THAP9 WILD-TYPE     73
D321V10, multiclass
        clus
vv       THAP9 MUTATED THAP9 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THAP9 MUTATED        0      0      1      1
  THAP9 WILD-TYPE     33     31     26     18
D321V11, multiclass
[1] "Remove cluster labels:" "THAP9 MUTATED"         
clus
  THAP9 MUTATED THAP9 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8      TCGA-EI-6506 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THAP9 MUTATED        0      0      2      0
  THAP9 WILD-TYPE     54     10     22     22
D321V12, multiclass
[1] "Remove cluster labels:" "THAP9 MUTATED"         
clus
  THAP9 MUTATED THAP9 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8      TCGA-EI-6506 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" "THAP9 WILD-TYPE" 

Clustering(322) Variable = ZNF449 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF449 MUTATED        0      0      0      3
  ZNF449 WILD-TYPE     46     58     64     40
D322V1, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF449 MUTATED        1      0      2
  ZNF449 WILD-TYPE     50     83     75
D322V2, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF449 MUTATED       11      2      1      0
  ZNF449 WILD-TYPE    167    181    100     20
D322V3, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF449 MUTATED        2      2      7
  ZNF449 WILD-TYPE     85     78     93
D322V4, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF449 MUTATED        0      5      7
  ZNF449 WILD-TYPE     89    155    131
D322V5, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF449 MUTATED        7      4      1
  ZNF449 WILD-TYPE    175    129     71
D322V6, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF449 MUTATED        2      5      4      3
  ZNF449 WILD-TYPE    110     91     88    183
D322V7, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF449 MUTATED        2      0      6      1      3      0      2
  ZNF449 WILD-TYPE     58     50     43     39     60    125     97
D322V8, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF449 MUTATED        5      2      2      4
  ZNF449 WILD-TYPE    125     76     66    192
D322V9, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF449 MUTATED        1      4      1      1      5      1      0      0
  ZNF449 WILD-TYPE     39     58     27     79     64     47     43     28
                  vv
clus               CLUS_9
  ZNF449 MUTATED        0
  ZNF449 WILD-TYPE     74
D322V10, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF449 MUTATED        0      1      2      1
  ZNF449 WILD-TYPE     33     30     25     18
D322V11, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF449 MUTATED        2      2      0      0
  ZNF449 WILD-TYPE     52      8     24     22
D322V12, multiclass
        clus
vv       ZNF449 MUTATED ZNF449 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              2                8
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(323) Variable = PRDM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM1 MUTATED        0      0      2      3
  PRDM1 WILD-TYPE     46     58     62     40
D323V1, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM1 MUTATED        2      2      1
  PRDM1 WILD-TYPE     49     81     76
D323V2, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM1 MUTATED       14      6      2      0
  PRDM1 WILD-TYPE    164    177     99     20
D323V3, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             6             177
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM1 MUTATED        3      3     11
  PRDM1 WILD-TYPE     84     77     89
D323V4, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM1 MUTATED        3      9      7
  PRDM1 WILD-TYPE     86    151    131
D323V5, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             9             151
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM1 MUTATED       10      8      1
  PRDM1 WILD-TYPE    172    125     71
D323V6, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             8             125
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM1 MUTATED        4      9      4      5
  PRDM1 WILD-TYPE    108     87     88    181
D323V7, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             9              87
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRDM1 MUTATED        3      4      7      1      2      2      3
  PRDM1 WILD-TYPE     57     46     42     39     61    123     96
D323V8, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM1 MUTATED       14      1      1      5
  PRDM1 WILD-TYPE    116     77     67    191
D323V9, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1            14             116
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRDM1 MUTATED        2      1      1      6      8      0      1      0
  PRDM1 WILD-TYPE     38     61     27     74     61     48     42     28
                 vv
clus              CLUS_9
  PRDM1 MUTATED        2
  PRDM1 WILD-TYPE     72
D323V10, multiclass
        clus
vv       PRDM1 MUTATED PRDM1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             6              74
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM1 MUTATED        0      0      0      1
  PRDM1 WILD-TYPE     33     31     27     18
D323V11, multiclass
[1] "Remove cluster labels:" "PRDM1 MUTATED"         
clus
  PRDM1 MUTATED PRDM1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-G5-6641 
"PRDM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM1 MUTATED        1      0      0      0
  PRDM1 WILD-TYPE     53     10     24     22
D323V12, multiclass
[1] "Remove cluster labels:" "PRDM1 MUTATED"         
clus
  PRDM1 MUTATED PRDM1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" "PRDM1 WILD-TYPE" 
     TCGA-G5-6641 
"PRDM1 WILD-TYPE" 

Clustering(324) Variable = MBTD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBTD1 MUTATED        0      0      0      0
  MBTD1 WILD-TYPE     46     58     64     43
D324V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MBTD1 MUTATED        0      0      0
  MBTD1 WILD-TYPE     51     83     77
D324V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBTD1 MUTATED        6      3      2      0
  MBTD1 WILD-TYPE    172    180     99     20
D324V3, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MBTD1 MUTATED        2      3      6
  MBTD1 WILD-TYPE     85     77     94
D324V4, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MBTD1 MUTATED        1      3      4
  MBTD1 WILD-TYPE     88    157    134
D324V5, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MBTD1 MUTATED        4      3      1
  MBTD1 WILD-TYPE    178    130     71
D324V6, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBTD1 MUTATED        2      5      4      0
  MBTD1 WILD-TYPE    110     91     88    186
D324V7, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MBTD1 MUTATED        2      2      5      1      1      0      0
  MBTD1 WILD-TYPE     58     48     44     39     62    125     99
D324V8, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBTD1 MUTATED        5      3      2      1
  MBTD1 WILD-TYPE    125     75     66    195
D324V9, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MBTD1 MUTATED        1      3      0      1      3      0      3      0
  MBTD1 WILD-TYPE     39     59     28     79     66     48     40     28
                 vv
clus              CLUS_9
  MBTD1 MUTATED        0
  MBTD1 WILD-TYPE     74
D324V10, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBTD1 MUTATED        0      1      0      3
  MBTD1 WILD-TYPE     33     30     27     16
D324V11, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBTD1 MUTATED        2      1      1      0
  MBTD1 WILD-TYPE     52      9     23     22
D324V12, multiclass
        clus
vv       MBTD1 MUTATED MBTD1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(325) Variable = MKL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL2 MUTATED        0      0      0      2
  MKL2 WILD-TYPE     46     58     64     41
D325V1, multiclass
[1] "Remove cluster labels:" "MKL2 MUTATED"          
clus
  MKL2 MUTATED MKL2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AY-4071 
"MKL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL2 MUTATED        1      0      1
  MKL2 WILD-TYPE     50     83     76
D325V2, multiclass
[1] "Remove cluster labels:" "MKL2 MUTATED"          
clus
  MKL2 MUTATED MKL2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" "MKL2 WILD-TYPE" 
    TCGA-AY-4071 
"MKL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL2 MUTATED        9      1      1      0
  MKL2 WILD-TYPE    169    182    100     20
D325V3, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL2 MUTATED        3      1      5
  MKL2 WILD-TYPE     84     79     95
D325V4, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL2 MUTATED        2      2      4
  MKL2 WILD-TYPE     87    158    134
D325V5, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL2 MUTATED        5      2      1
  MKL2 WILD-TYPE    177    131     71
D325V6, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL2 MUTATED        2      2      5      2
  MKL2 WILD-TYPE    110     94     87    184
D325V7, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKL2 MUTATED        2      1      7      0      0      0      1
  MKL2 WILD-TYPE     58     49     42     40     63    125     98
D325V8, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL2 MUTATED        7      1      0      3
  MKL2 WILD-TYPE    123     77     68    193
D325V9, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MKL2 MUTATED        1      3      1      2      3      0      1      0      0
  MKL2 WILD-TYPE     39     59     27     78     66     48     42     28     74
D325V10, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL2 MUTATED        2      0      0      3
  MKL2 WILD-TYPE     31     31     27     16
D325V11, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL2 MUTATED        5      0      0      0
  MKL2 WILD-TYPE     49     10     24     22
D325V12, multiclass
        clus
vv       MKL2 MUTATED MKL2 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(326) Variable = LIG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIG1 MUTATED        0      0      0      4
  LIG1 WILD-TYPE     46     58     64     39
D326V1, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIG1 MUTATED        2      1      1
  LIG1 WILD-TYPE     49     82     76
D326V2, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIG1 MUTATED       11      2      4      2
  LIG1 WILD-TYPE    167    181     97     18
D326V3, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            2            181
  CLUS_3            4             97
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIG1 MUTATED        7      2      6
  LIG1 WILD-TYPE     80     78     94
D326V4, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIG1 MUTATED        2      8      9
  LIG1 WILD-TYPE     87    152    129
D326V5, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            8            152
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIG1 MUTATED       10      6      3
  LIG1 WILD-TYPE    172    127     69
D326V6, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            6            127
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIG1 MUTATED        3      8      5      4
  LIG1 WILD-TYPE    109     88     87    182
D326V7, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            8             88
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LIG1 MUTATED        2      3      6      2      2      0      5
  LIG1 WILD-TYPE     58     47     43     38     61    125     94
D326V8, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIG1 MUTATED       10      2      2      5
  LIG1 WILD-TYPE    120     76     66    191
D326V9, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LIG1 MUTATED        2      3      2      1      6      1      4      0      0
  LIG1 WILD-TYPE     38     59     26     79     63     47     39     28     74
D326V10, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIG1 MUTATED        1      3      1      3
  LIG1 WILD-TYPE     32     28     26     16
D326V11, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             28
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIG1 MUTATED        5      0      2      1
  LIG1 WILD-TYPE     49     10     22     21
D326V12, multiclass
        clus
vv       LIG1 MUTATED LIG1 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(327) Variable = ZNF708 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF708 MUTATED        1      0      0      3
  ZNF708 WILD-TYPE     45     58     64     40
D327V1, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF708 MUTATED        1      2      1
  ZNF708 WILD-TYPE     50     81     76
D327V2, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF708 MUTATED        9      3      0      1
  ZNF708 WILD-TYPE    169    180    101     19
D327V3, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF708 MUTATED        4      3      2
  ZNF708 WILD-TYPE     83     77     98
D327V4, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF708 MUTATED        1      6      3
  ZNF708 WILD-TYPE     88    154    135
D327V5, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF708 MUTATED        3      5      2
  ZNF708 WILD-TYPE    179    128     70
D327V6, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF708 MUTATED        4      2      3      4
  ZNF708 WILD-TYPE    108     94     89    182
D327V7, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF708 MUTATED        4      1      3      2      0      1      2
  ZNF708 WILD-TYPE     56     49     46     38     63    124     97
D327V8, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF708 MUTATED        6      3      0      3
  ZNF708 WILD-TYPE    124     75     68    193
D327V9, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF708 MUTATED        2      2      1      3      1      2      1      0
  ZNF708 WILD-TYPE     38     60     27     77     68     46     42     28
                  vv
clus               CLUS_9
  ZNF708 MUTATED        0
  ZNF708 WILD-TYPE     74
D327V10, multiclass
        clus
vv       ZNF708 MUTATED ZNF708 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              1               68
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF708 MUTATED        1      0      0      1
  ZNF708 WILD-TYPE     32     31     27     18
D327V11, multiclass
[1] "Remove cluster labels:" "ZNF708 MUTATED"        
clus
  ZNF708 MUTATED ZNF708 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF708 MUTATED        2      0      0      0
  ZNF708 WILD-TYPE     52     10     24     22
D327V12, multiclass
[1] "Remove cluster labels:" "ZNF708 MUTATED"        
clus
  ZNF708 MUTATED ZNF708 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" "ZNF708 WILD-TYPE" 

Clustering(328) Variable = IL13RA2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL13RA2 MUTATED        1      0      1      1
  IL13RA2 WILD-TYPE     45     58     63     42
D328V1, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL13RA2 MUTATED        1      1      1
  IL13RA2 WILD-TYPE     50     82     76
D328V2, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL13RA2 MUTATED        8      4      4      0
  IL13RA2 WILD-TYPE    170    179     97     20
D328V3, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               4               179
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL13RA2 MUTATED        4      5      4
  IL13RA2 WILD-TYPE     83     75     96
D328V4, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               5                75
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL13RA2 MUTATED        0      8      5
  IL13RA2 WILD-TYPE     89    152    133
D328V5, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               8               152
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IL13RA2 MUTATED        5      7      1
  IL13RA2 WILD-TYPE    177    126     71
D328V6, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               7               126
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL13RA2 MUTATED        6      4      2      4
  IL13RA2 WILD-TYPE    106     92     90    182
D328V7, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               6               106
  CLUS_2               4                92
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL13RA2 MUTATED        5      1      1      4      1      1      3
  IL13RA2 WILD-TYPE     55     49     48     36     62    124     96
D328V8, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               4                36
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL13RA2 MUTATED        9      0      1      5
  IL13RA2 WILD-TYPE    121     78     67    191
D328V9, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL13RA2 MUTATED        3      1      2      5      1      2      0      0
  IL13RA2 WILD-TYPE     37     61     26     75     68     46     43     28
                   vv
clus                CLUS_9
  IL13RA2 MUTATED        1
  IL13RA2 WILD-TYPE     73
D328V10, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               5                75
  CLUS_5               1                68
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL13RA2 MUTATED        1      0      1      1
  IL13RA2 WILD-TYPE     32     31     26     18
D328V11, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL13RA2 MUTATED        2      0      1      0
  IL13RA2 WILD-TYPE     52     10     23     22
D328V12, multiclass
        clus
vv       IL13RA2 MUTATED IL13RA2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(329) Variable = FGFR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        0      0      0      1
  FGFR3 WILD-TYPE     46     58     64     42
D329V1, multiclass
[1] "Remove cluster labels:" "FGFR3 MUTATED"         
clus
  FGFR3 MUTATED FGFR3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        0      0      1
  FGFR3 WILD-TYPE     51     83     76
D329V2, multiclass
[1] "Remove cluster labels:" "FGFR3 MUTATED"         
clus
  FGFR3 MUTATED FGFR3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FGFR3 WILD-TYPE" "FGFR3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED       16      4      3      0
  FGFR3 WILD-TYPE    162    179     98     20
D329V3, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        8      3     10
  FGFR3 WILD-TYPE     79     77     90
D329V4, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        1      9      9
  FGFR3 WILD-TYPE     88    151    129
D329V5, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED       11      8      0
  FGFR3 WILD-TYPE    171    125     72
D329V6, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             8             125
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        4      7     10      2
  FGFR3 WILD-TYPE    108     89     82    184
D329V7, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             7              89
  CLUS_3            10              82
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGFR3 MUTATED        0      9      8      0      4      0      2
  FGFR3 WILD-TYPE     60     41     41     40     59    125     97
D329V8, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             9              41
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED       12      7      1      3
  FGFR3 WILD-TYPE    118     71     67    193
D329V9, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             7              71
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FGFR3 MUTATED        3      8      1      3      4      0      2      0
  FGFR3 WILD-TYPE     37     54     27     77     65     48     41     28
                 vv
clus              CLUS_9
  FGFR3 MUTATED        2
  FGFR3 WILD-TYPE     72
D329V10, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             8              54
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        4      3      0      2
  FGFR3 WILD-TYPE     29     28     27     17
D329V11, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        5      1      2      1
  FGFR3 WILD-TYPE     49      9     22     21
D329V12, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(330) Variable = PTPN12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        4      0      1      5
  PTPN12 WILD-TYPE     42     58     63     38
D330V1, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN12 MUTATED        5      3      2
  PTPN12 WILD-TYPE     46     80     75
D330V2, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED       18      2      1      0
  PTPN12 WILD-TYPE    160    181    100     20
D330V3, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN12 MUTATED        4      2      4
  PTPN12 WILD-TYPE     83     78     96
D330V4, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN12 MUTATED        2      7      7
  PTPN12 WILD-TYPE     87    153    131
D330V5, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN12 MUTATED        6      8      2
  PTPN12 WILD-TYPE    176    125     70
D330V6, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              8              125
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        3      4      4     10
  PTPN12 WILD-TYPE    109     92     88    176
D330V7, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN12 MUTATED        2      0      6      0      2      2      9
  PTPN12 WILD-TYPE     58     50     43     40     61    123     90
D330V8, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        4      3      1     12
  PTPN12 WILD-TYPE    126     75     67    184
D330V9, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPN12 MUTATED        0      2      2      3      8      0      2      1
  PTPN12 WILD-TYPE     40     60     26     77     61     48     41     27
                  vv
clus               CLUS_9
  PTPN12 MUTATED        2
  PTPN12 WILD-TYPE     72
D330V10, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        2      0      0      1
  PTPN12 WILD-TYPE     31     31     27     18
D330V11, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        2      0      1      0
  PTPN12 WILD-TYPE     52     10     23     22
D330V12, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(331) Variable = TUBE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        1      1      0      2
  TUBE1 WILD-TYPE     45     57     64     41
D331V1, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        1      2      1
  TUBE1 WILD-TYPE     50     81     76
D331V2, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED       11      0      1      0
  TUBE1 WILD-TYPE    167    183    100     20
D331V3, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        2      1      6
  TUBE1 WILD-TYPE     85     79     94
D331V4, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        1      3      5
  TUBE1 WILD-TYPE     88    157    133
D331V5, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        5      4      0
  TUBE1 WILD-TYPE    177    129     72
D331V6, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        2      5      2      3
  TUBE1 WILD-TYPE    110     91     90    183
D331V7, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TUBE1 MUTATED        2      1      4      1      1      1      2
  TUBE1 WILD-TYPE     58     49     45     39     62    124     97
D331V8, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        7      1      0      4
  TUBE1 WILD-TYPE    123     77     68    192
D331V9, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TUBE1 MUTATED        1      2      1      1      6      1      0      0
  TUBE1 WILD-TYPE     39     60     27     79     63     47     43     28
                 vv
clus              CLUS_9
  TUBE1 MUTATED        0
  TUBE1 WILD-TYPE     74
D331V10, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        0      0      0      0
  TUBE1 WILD-TYPE     33     31     27     19
D331V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        0      0      0      0
  TUBE1 WILD-TYPE     54     10     24     22
D331V12, multiclass

Clustering(332) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        2      0      1      3
  TGFBR2 WILD-TYPE     44     58     63     40
D332V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        3      2      1
  TGFBR2 WILD-TYPE     48     81     76
D332V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED       14      6      1      1
  TGFBR2 WILD-TYPE    164    177    100     19
D332V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              6              177
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        5      5      5
  TGFBR2 WILD-TYPE     82     75     95
D332V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              5               75
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        5      7      9
  TGFBR2 WILD-TYPE     84    153    129
D332V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              7              153
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED       11      5      5
  TGFBR2 WILD-TYPE    171    128     67
D332V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              5              128
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        6      8      3      6
  TGFBR2 WILD-TYPE    106     88     89    180
D332V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              8               88
  CLUS_3              3               89
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR2 MUTATED        4      1      7      1      2      2      6
  TGFBR2 WILD-TYPE     56     49     42     39     61    123     93
D332V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        6      6      2      8
  TGFBR2 WILD-TYPE    124     72     66    188
D332V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              6               72
  CLUS_3              2               66
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TGFBR2 MUTATED        1      2      2      3      9      2      1      1
  TGFBR2 WILD-TYPE     39     60     26     77     60     46     42     27
                  vv
clus               CLUS_9
  TGFBR2 MUTATED        1
  TGFBR2 WILD-TYPE     73
D332V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        3      2      2      0
  TGFBR2 WILD-TYPE     30     29     25     19
D332V11, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        3      1      1      2
  TGFBR2 WILD-TYPE     51      9     23     20
D332V12, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(333) Variable = OR1J2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1J2 MUTATED        0      0      0      2
  OR1J2 WILD-TYPE     46     58     64     41
D333V1, multiclass
[1] "Remove cluster labels:" "OR1J2 MUTATED"         
clus
  OR1J2 MUTATED OR1J2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AY-4071 
"OR1J2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1J2 MUTATED        0      0      2
  OR1J2 WILD-TYPE     51     83     75
D333V2, multiclass
[1] "Remove cluster labels:" "OR1J2 MUTATED"         
clus
  OR1J2 MUTATED OR1J2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AY-4071 
"OR1J2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1J2 MUTATED        6      5      2      0
  OR1J2 WILD-TYPE    172    178     99     20
D333V3, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1J2 MUTATED        2      5      4
  OR1J2 WILD-TYPE     85     75     96
D333V4, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             5              75
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1J2 MUTATED        1      6      3
  OR1J2 WILD-TYPE     88    154    135
D333V5, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1J2 MUTATED        2      8      0
  OR1J2 WILD-TYPE    180    125     72
D333V6, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             8             125
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1J2 MUTATED        5      6      0      2
  OR1J2 WILD-TYPE    107     90     92    184
D333V7, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR1J2 MUTATED        2      5      1      2      2      0      1
  OR1J2 WILD-TYPE     58     45     48     38     61    125     98
D333V8, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             5              45
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1J2 MUTATED       10      0      0      3
  OR1J2 WILD-TYPE    120     78     68    193
D333V9, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR1J2 MUTATED        4      0      2      2      2      2      1      0
  OR1J2 WILD-TYPE     36     62     26     78     67     46     42     28
                 vv
clus              CLUS_9
  OR1J2 MUTATED        0
  OR1J2 WILD-TYPE     74
D333V10, multiclass
        clus
vv       OR1J2 MUTATED OR1J2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1J2 MUTATED        0      0      0      1
  OR1J2 WILD-TYPE     33     31     27     18
D333V11, multiclass
[1] "Remove cluster labels:" "OR1J2 MUTATED"         
clus
  OR1J2 MUTATED OR1J2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-G5-6641 
"OR1J2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1J2 MUTATED        1      0      0      0
  OR1J2 WILD-TYPE     53     10     24     22
D333V12, multiclass
[1] "Remove cluster labels:" "OR1J2 MUTATED"         
clus
  OR1J2 MUTATED OR1J2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" "OR1J2 WILD-TYPE" 
     TCGA-G5-6641 
"OR1J2 WILD-TYPE" 

Clustering(334) Variable = SPR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPR MUTATED        0      0      0      0
  SPR WILD-TYPE     46     58     64     43
D334V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SPR MUTATED        0      0      0
  SPR WILD-TYPE     51     83     77
D334V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPR MUTATED        5      1      1      0
  SPR WILD-TYPE    173    182    100     20
D334V3, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           5           173
  CLUS_2           1           182
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SPR MUTATED        1      0      6
  SPR WILD-TYPE     86     80     94
D334V4, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           1            86
  CLUS_2           0            80
  CLUS_3           6            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SPR MUTATED        1      2      1
  SPR WILD-TYPE     88    158    137
D334V5, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           1            88
  CLUS_2           2           158
  CLUS_3           1           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SPR MUTATED        2      1      1
  SPR WILD-TYPE    180    132     71
D334V6, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           2           180
  CLUS_2           1           132
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPR MUTATED        0      6      1      0
  SPR WILD-TYPE    112     90     91    186
D334V7, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           0           112
  CLUS_2           6            90
  CLUS_3           1            91
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPR MUTATED        0      3      4      0      0      0      0
  SPR WILD-TYPE     60     47     45     40     63    125     99
D334V8, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           0            60
  CLUS_2           3            47
  CLUS_3           4            45
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPR MUTATED        5      1      0      1
  SPR WILD-TYPE    125     77     68    195
D334V9, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           5           125
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           1           195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SPR MUTATED        1      1      1      1      3      0      0      0      0
  SPR WILD-TYPE     39     61     27     79     66     48     43     28     74
D334V10, multiclass
        clus
vv       SPR MUTATED SPR WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           1            79
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPR MUTATED        0      0      0      0
  SPR WILD-TYPE     33     31     27     19
D334V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPR MUTATED        0      0      0      0
  SPR WILD-TYPE     54     10     24     22
D334V12, multiclass

Clustering(335) Variable = TRIM32 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM32 MUTATED        3      0      1      1
  TRIM32 WILD-TYPE     43     58     63     42
D335V1, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM32 MUTATED        3      1      1
  TRIM32 WILD-TYPE     48     82     76
D335V2, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM32 MUTATED        7      3      2      0
  TRIM32 WILD-TYPE    171    180     99     20
D335V3, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM32 MUTATED        2      2      2
  TRIM32 WILD-TYPE     85     78     98
D335V4, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM32 MUTATED        3      2      5
  TRIM32 WILD-TYPE     86    158    133
D335V5, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM32 MUTATED        5      2      3
  TRIM32 WILD-TYPE    177    131     69
D335V6, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              2              131
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM32 MUTATED        3      2      2      5
  TRIM32 WILD-TYPE    109     94     90    181
D335V7, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM32 MUTATED        1      1      2      2      0      1      5
  TRIM32 WILD-TYPE     59     49     47     38     63    124     94
D335V8, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM32 MUTATED        5      1      1      5
  TRIM32 WILD-TYPE    125     77     67    191
D335V9, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM32 MUTATED        0      1      2      0      6      1      1      0
  TRIM32 WILD-TYPE     40     61     26     80     63     47     42     28
                  vv
clus               CLUS_9
  TRIM32 MUTATED        1
  TRIM32 WILD-TYPE     73
D335V10, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM32 MUTATED        2      1      0      1
  TRIM32 WILD-TYPE     31     30     27     18
D335V11, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM32 MUTATED        3      0      1      0
  TRIM32 WILD-TYPE     51     10     23     22
D335V12, multiclass
        clus
vv       TRIM32 MUTATED TRIM32 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(336) Variable = TWISTNB MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        1      0      0      1
  TWISTNB WILD-TYPE     45     58     64     42
D336V1, multiclass
[1] "Remove cluster labels:" "TWISTNB MUTATED"       
clus
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AY-4071 
"TWISTNB WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TWISTNB MUTATED        1      0      1
  TWISTNB WILD-TYPE     50     83     76
D336V2, multiclass
[1] "Remove cluster labels:" "TWISTNB MUTATED"       
clus
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-AY-4071 
"TWISTNB WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        4      2      3      0
  TWISTNB WILD-TYPE    174    181     98     20
D336V3, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               4               174
  CLUS_2               2               181
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TWISTNB MUTATED        4      2      1
  TWISTNB WILD-TYPE     83     78     99
D336V4, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TWISTNB MUTATED        1      4      2
  TWISTNB WILD-TYPE     88    156    136
D336V5, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TWISTNB MUTATED        3      2      2
  TWISTNB WILD-TYPE    179    131     70
D336V6, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        3      2      2      2
  TWISTNB WILD-TYPE    109     94     90    184
D336V7, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               3               109
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TWISTNB MUTATED        2      0      2      1      3      0      1
  TWISTNB WILD-TYPE     58     50     47     39     60    125     98
D336V8, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        5      2      0      2
  TWISTNB WILD-TYPE    125     76     68    194
D336V9, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               5               125
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TWISTNB MUTATED        1      2      0      1      4      0      1      0
  TWISTNB WILD-TYPE     39     60     28     79     65     48     42     28
                   vv
clus                CLUS_9
  TWISTNB MUTATED        0
  TWISTNB WILD-TYPE     74
D336V10, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        2      0      0      1
  TWISTNB WILD-TYPE     31     31     27     18
D336V11, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TWISTNB MUTATED        2      0      1      0
  TWISTNB WILD-TYPE     52     10     23     22
D336V12, multiclass
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(337) Variable = PKDREJ MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKDREJ MUTATED        3      1      1      4
  PKDREJ WILD-TYPE     43     57     63     39
D337V1, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKDREJ MUTATED        4      4      1
  PKDREJ WILD-TYPE     47     79     76
D337V2, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              4               47
  CLUS_2              4               79
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKDREJ MUTATED       23      8      5      0
  PKDREJ WILD-TYPE    155    175     96     20
D337V3, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1             23              155
  CLUS_2              8              175
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKDREJ MUTATED       10      5     12
  PKDREJ WILD-TYPE     77     75     88
D337V4, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1             10               77
  CLUS_2              5               75
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKDREJ MUTATED        3     10     16
  PKDREJ WILD-TYPE     86    150    122
D337V5, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              3               86
  CLUS_2             10              150
  CLUS_3             16              122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKDREJ MUTATED       20      8      1
  PKDREJ WILD-TYPE    162    125     71
D337V6, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1             20              162
  CLUS_2              8              125
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKDREJ MUTATED        3     10     14      9
  PKDREJ WILD-TYPE    109     86     78    177
D337V7, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              3              109
  CLUS_2             10               86
  CLUS_3             14               78
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PKDREJ MUTATED        2      5     13      2      6      3      5
  PKDREJ WILD-TYPE     58     45     36     38     57    122     94
D337V8, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              2               58
  CLUS_2              5               45
  CLUS_3             13               36
  CLUS_4              2               38
  CLUS_5              6               57
  CLUS_6              3              122
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKDREJ MUTATED       18      5      3      8
  PKDREJ WILD-TYPE    112     73     65    188
D337V9, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1             18              112
  CLUS_2              5               73
  CLUS_3              3               65
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PKDREJ MUTATED        3      9      4      3     11      0      2      0
  PKDREJ WILD-TYPE     37     53     24     77     58     48     41     28
                  vv
clus               CLUS_9
  PKDREJ MUTATED        2
  PKDREJ WILD-TYPE     72
D337V10, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              3               37
  CLUS_2              9               53
  CLUS_3              4               24
  CLUS_4              3               77
  CLUS_5             11               58
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKDREJ MUTATED        3      1      2      4
  PKDREJ WILD-TYPE     30     30     25     15
D337V11, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKDREJ MUTATED        6      0      4      0
  PKDREJ WILD-TYPE     48     10     20     22
D337V12, multiclass
        clus
vv       PKDREJ MUTATED PKDREJ WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(338) Variable = SYNE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNE1 MUTATED       15      8      5     17
  SYNE1 WILD-TYPE     31     50     59     26
D338V1, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            15              31
  CLUS_2             8              50
  CLUS_3             5              59
  CLUS_4            17              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNE1 MUTATED       23      9     13
  SYNE1 WILD-TYPE     28     74     64
D338V2, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            23              28
  CLUS_2             9              74
  CLUS_3            13              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNE1 MUTATED       79     33     25      2
  SYNE1 WILD-TYPE     99    150     76     18
D338V3, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            79              99
  CLUS_2            33             150
  CLUS_3            25              76
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNE1 MUTATED       37     21     39
  SYNE1 WILD-TYPE     50     59     61
D338V4, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            37              50
  CLUS_2            21              59
  CLUS_3            39              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNE1 MUTATED       25     47     45
  SYNE1 WILD-TYPE     64    113     93
D338V5, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            25              64
  CLUS_2            47             113
  CLUS_3            45              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNE1 MUTATED       56     38     23
  SYNE1 WILD-TYPE    126     95     49
D338V6, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            56             126
  CLUS_2            38              95
  CLUS_3            23              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNE1 MUTATED       31     38     30     42
  SYNE1 WILD-TYPE     81     58     62    144
D338V7, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            31              81
  CLUS_2            38              58
  CLUS_3            30              62
  CLUS_4            42             144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNE1 MUTATED       18     16     28     10     19     16     34
  SYNE1 WILD-TYPE     42     34     21     30     44    109     65
D338V8, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            18              42
  CLUS_2            16              34
  CLUS_3            28              21
  CLUS_4            10              30
  CLUS_5            19              44
  CLUS_6            16             109
  CLUS_7            34              65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNE1 MUTATED       47     27     13     51
  SYNE1 WILD-TYPE     83     51     55    145
D338V9, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            47              83
  CLUS_2            27              51
  CLUS_3            13              55
  CLUS_4            51             145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SYNE1 MUTATED       13     22      8     24     34     11     13      7
  SYNE1 WILD-TYPE     27     40     20     56     35     37     30     21
                 vv
clus              CLUS_9
  SYNE1 MUTATED        6
  SYNE1 WILD-TYPE     68
D338V10, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            13              27
  CLUS_2            22              40
  CLUS_3             8              20
  CLUS_4            24              56
  CLUS_5            34              35
  CLUS_6            11              37
  CLUS_7            13              30
  CLUS_8             7              21
  CLUS_9             6              68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNE1 MUTATED        8     11      6      9
  SYNE1 WILD-TYPE     25     20     21     10
D338V11, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             8              25
  CLUS_2            11              20
  CLUS_3             6              21
  CLUS_4             9              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNE1 MUTATED       18      1      9      6
  SYNE1 WILD-TYPE     36      9     15     16
D338V12, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            18              36
  CLUS_2             1               9
  CLUS_3             9              15
  CLUS_4             6              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(339) Variable = WNT16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        0      0      0      1
  WNT16 WILD-TYPE     46     58     64     42
D339V1, multiclass
[1] "Remove cluster labels:" "WNT16 MUTATED"         
clus
  WNT16 MUTATED WNT16 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED        0      1      0
  WNT16 WILD-TYPE     51     82     77
D339V2, multiclass
[1] "Remove cluster labels:" "WNT16 MUTATED"         
clus
  WNT16 MUTATED WNT16 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        6      0      2      0
  WNT16 WILD-TYPE    172    183     99     20
D339V3, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED        4      1      2
  WNT16 WILD-TYPE     83     79     98
D339V4, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED        1      2      3
  WNT16 WILD-TYPE     88    158    135
D339V5, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED        2      3      1
  WNT16 WILD-TYPE    180    130     71
D339V6, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        2      2      3      1
  WNT16 WILD-TYPE    110     94     89    185
D339V7, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WNT16 MUTATED        0      2      4      1      0      0      1
  WNT16 WILD-TYPE     60     48     45     39     63    125     98
D339V8, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        1      3      0      4
  WNT16 WILD-TYPE    129     75     68    192
D339V9, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WNT16 MUTATED        0      3      2      0      2      0      0      0
  WNT16 WILD-TYPE     40     59     26     80     67     48     43     28
                 vv
clus              CLUS_9
  WNT16 MUTATED        1
  WNT16 WILD-TYPE     73
D339V10, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        1      1      0      0
  WNT16 WILD-TYPE     32     30     27     19
D339V11, multiclass
[1] "Remove cluster labels:" "WNT16 MUTATED"         
clus
  WNT16 MUTATED WNT16 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        2      0      0      0
  WNT16 WILD-TYPE     52     10     24     22
D339V12, multiclass
[1] "Remove cluster labels:" "WNT16 MUTATED"         
clus
  WNT16 MUTATED WNT16 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" "WNT16 WILD-TYPE" 

Clustering(340) Variable = ZNF189 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF189 MUTATED        1      0      0      1
  ZNF189 WILD-TYPE     45     58     64     42
D340V1, multiclass
[1] "Remove cluster labels:" "ZNF189 MUTATED"        
clus
  ZNF189 MUTATED ZNF189 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF189 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF189 MUTATED        1      0      1
  ZNF189 WILD-TYPE     50     83     76
D340V2, multiclass
[1] "Remove cluster labels:" "ZNF189 MUTATED"        
clus
  ZNF189 MUTATED ZNF189 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF189 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF189 MUTATED       10      4      4      0
  ZNF189 WILD-TYPE    168    179     97     20
D340V3, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              4              179
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF189 MUTATED        7      4      5
  ZNF189 WILD-TYPE     80     76     95
D340V4, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              4               76
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF189 MUTATED        1      7     10
  ZNF189 WILD-TYPE     88    153    128
D340V5, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              7              153
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF189 MUTATED       10      6      2
  ZNF189 WILD-TYPE    172    127     70
D340V6, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF189 MUTATED        6      3      6      4
  ZNF189 WILD-TYPE    106     93     86    182
D340V7, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              3               93
  CLUS_3              6               86
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF189 MUTATED        5      3      3      0      5      1      2
  ZNF189 WILD-TYPE     55     47     46     40     58    124     97
D340V8, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              5               58
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF189 MUTATED        8      5      1      5
  ZNF189 WILD-TYPE    122     73     67    191
D340V9, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF189 MUTATED        3      5      2      2      2      1      1      0
  ZNF189 WILD-TYPE     37     57     26     78     67     47     42     28
                  vv
clus               CLUS_9
  ZNF189 MUTATED        3
  ZNF189 WILD-TYPE     71
D340V10, multiclass
        clus
vv       ZNF189 MUTATED ZNF189 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF189 MUTATED        1      0      0      1
  ZNF189 WILD-TYPE     32     31     27     18
D340V11, multiclass
[1] "Remove cluster labels:" "ZNF189 MUTATED"        
clus
  ZNF189 MUTATED ZNF189 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901       TCGA-AD-6963 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF189 MUTATED        2      0      0      0
  ZNF189 WILD-TYPE     52     10     24     22
D340V12, multiclass
[1] "Remove cluster labels:" "ZNF189 MUTATED"        
clus
  ZNF189 MUTATED ZNF189 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901       TCGA-AD-6963 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" "ZNF189 WILD-TYPE" 

Clustering(341) Variable = TRRAP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRRAP MUTATED        8      0      3      3
  TRRAP WILD-TYPE     38     58     61     40
D341V1, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             8              38
  CLUS_2             0              58
  CLUS_3             3              61
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRRAP MUTATED        7      3      4
  TRRAP WILD-TYPE     44     80     73
D341V2, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             7              44
  CLUS_2             3              80
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRRAP MUTATED       30     15      8      3
  TRRAP WILD-TYPE    148    168     93     17
D341V3, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1            30             148
  CLUS_2            15             168
  CLUS_3             8              93
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRRAP MUTATED        9      8     23
  TRRAP WILD-TYPE     78     72     77
D341V4, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             9              78
  CLUS_2             8              72
  CLUS_3            23              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRRAP MUTATED        8     18     22
  TRRAP WILD-TYPE     81    142    116
D341V5, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             8              81
  CLUS_2            18             142
  CLUS_3            22             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRRAP MUTATED       22     19      7
  TRRAP WILD-TYPE    160    114     65
D341V6, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1            22             160
  CLUS_2            19             114
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRRAP MUTATED        5     17     16     19
  TRRAP WILD-TYPE    107     79     76    167
D341V7, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             5             107
  CLUS_2            17              79
  CLUS_3            16              76
  CLUS_4            19             167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRRAP MUTATED        6      9     14      3      6      4     15
  TRRAP WILD-TYPE     54     41     35     37     57    121     84
D341V8, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             6              54
  CLUS_2             9              41
  CLUS_3            14              35
  CLUS_4             3              37
  CLUS_5             6              57
  CLUS_6             4             121
  CLUS_7            15              84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRRAP MUTATED       20      9      4     23
  TRRAP WILD-TYPE    110     69     64    173
D341V9, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1            20             110
  CLUS_2             9              69
  CLUS_3             4              64
  CLUS_4            23             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRRAP MUTATED        6     11      4      7     16      2      5      2
  TRRAP WILD-TYPE     34     51     24     73     53     46     38     26
                 vv
clus              CLUS_9
  TRRAP MUTATED        3
  TRRAP WILD-TYPE     71
D341V10, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             6              34
  CLUS_2            11              51
  CLUS_3             4              24
  CLUS_4             7              73
  CLUS_5            16              53
  CLUS_6             2              46
  CLUS_7             5              38
  CLUS_8             2              26
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRRAP MUTATED        4      1      3      6
  TRRAP WILD-TYPE     29     30     24     13
D341V11, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             3              24
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRRAP MUTATED        9      1      4      0
  TRRAP WILD-TYPE     45      9     20     22
D341V12, multiclass
        clus
vv       TRRAP MUTATED TRRAP WILD-TYPE
  CLUS_1             9              45
  CLUS_2             1               9
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(342) Variable = C14ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        2      0      1      2
  C14ORF43 WILD-TYPE     44     58     63     41
D342V1, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        4      1      0
  C14ORF43 WILD-TYPE     47     82     77
D342V2, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                1                 82
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED       17      2      1      0
  C14ORF43 WILD-TYPE    161    181    100     20
D342V3, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               17                161
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        6      1      9
  C14ORF43 WILD-TYPE     81     79     91
D342V4, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                6                 81
  CLUS_2                1                 79
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        3      5     10
  C14ORF43 WILD-TYPE     86    155    128
D342V5, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                5                155
  CLUS_3               10                128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        9      3      6
  C14ORF43 WILD-TYPE    173    130     66
D342V6, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                9                173
  CLUS_2                3                130
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        1      7      7      5
  C14ORF43 WILD-TYPE    111     89     85    181
D342V7, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                7                 89
  CLUS_3                7                 85
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF43 MUTATED        0      0     11      2      2      1      4
  C14ORF43 WILD-TYPE     60     50     38     38     61    124     95
D342V8, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3               11                 38
  CLUS_4                2                 38
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED       10      3      1      6
  C14ORF43 WILD-TYPE    120     75     67    190
D342V9, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               10                120
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF43 MUTATED        2      5      1      1      9      0      1      0
  C14ORF43 WILD-TYPE     38     57     27     79     60     48     42     28
                    vv
clus                 CLUS_9
  C14ORF43 MUTATED        1
  C14ORF43 WILD-TYPE     73
D342V10, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                5                 57
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                9                 60
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        1      0      0      7
  C14ORF43 WILD-TYPE     32     31     27     12
D342V11, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        4      0      4      0
  C14ORF43 WILD-TYPE     50     10     20     22
D342V12, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                4                 20
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(343) Variable = LHCGR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHCGR MUTATED        2      1      0      1
  LHCGR WILD-TYPE     44     57     64     42
D343V1, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LHCGR MUTATED        1      2      1
  LHCGR WILD-TYPE     50     81     76
D343V2, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHCGR MUTATED       13      3      6      1
  LHCGR WILD-TYPE    165    180     95     19
D343V3, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1            13             165
  CLUS_2             3             180
  CLUS_3             6              95
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LHCGR MUTATED        6      3     11
  LHCGR WILD-TYPE     81     77     89
D343V4, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LHCGR MUTATED        4     10      7
  LHCGR WILD-TYPE     85    150    131
D343V5, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             4              85
  CLUS_2            10             150
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LHCGR MUTATED       10      8      3
  LHCGR WILD-TYPE    172    125     69
D343V6, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1            10             172
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHCGR MUTATED        6      6      9      3
  LHCGR WILD-TYPE    106     90     83    183
D343V7, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             6             106
  CLUS_2             6              90
  CLUS_3             9              83
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LHCGR MUTATED        5      6      4      0      4      2      3
  LHCGR WILD-TYPE     55     44     45     40     59    123     96
D343V8, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             5              55
  CLUS_2             6              44
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHCGR MUTATED       11      8      0      5
  LHCGR WILD-TYPE    119     70     68    191
D343V9, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1            11             119
  CLUS_2             8              70
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LHCGR MUTATED        4      3      0      5      3      3      1      3
  LHCGR WILD-TYPE     36     59     28     75     66     45     42     25
                 vv
clus              CLUS_9
  LHCGR MUTATED        2
  LHCGR WILD-TYPE     72
D343V10, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             5              75
  CLUS_5             3              66
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             3              25
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHCGR MUTATED        1      2      1      3
  LHCGR WILD-TYPE     32     29     26     16
D343V11, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LHCGR MUTATED        5      0      2      0
  LHCGR WILD-TYPE     49     10     22     22
D343V12, multiclass
        clus
vv       LHCGR MUTATED LHCGR WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(344) Variable = ZC3H13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        6      1      2     11
  ZC3H13 WILD-TYPE     40     57     62     32
D344V1, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              6               40
  CLUS_2              1               57
  CLUS_3              2               62
  CLUS_4             11               32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED       13      2      5
  ZC3H13 WILD-TYPE     38     81     72
D344V2, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             13               38
  CLUS_2              2               81
  CLUS_3              5               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED       26      7      6      0
  ZC3H13 WILD-TYPE    152    176     95     20
D344V3, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             26              152
  CLUS_2              7              176
  CLUS_3              6               95
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED        7      5      8
  ZC3H13 WILD-TYPE     80     75     92
D344V4, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              5               75
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED        6     10     17
  ZC3H13 WILD-TYPE     83    150    121
D344V5, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              6               83
  CLUS_2             10              150
  CLUS_3             17              121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED       18     11      4
  ZC3H13 WILD-TYPE    164    122     68
D344V6, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             18              164
  CLUS_2             11              122
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        5     10      5     20
  ZC3H13 WILD-TYPE    107     86     87    166
D344V7, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              5              107
  CLUS_2             10               86
  CLUS_3              5               87
  CLUS_4             20              166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H13 MUTATED        3      4      6      1      3      4     19
  ZC3H13 WILD-TYPE     57     46     43     39     60    121     80
D344V8, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              4               46
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              4              121
  CLUS_7             19               80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        7      4      5     21
  ZC3H13 WILD-TYPE    123     74     63    175
D344V9, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              5               63
  CLUS_4             21              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZC3H13 MUTATED        2      5      4      2     14      1      3      2
  ZC3H13 WILD-TYPE     38     57     24     78     55     47     40     26
                  vv
clus               CLUS_9
  ZC3H13 MUTATED        4
  ZC3H13 WILD-TYPE     70
D344V10, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              4               24
  CLUS_4              2               78
  CLUS_5             14               55
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        1      2      2      2
  ZC3H13 WILD-TYPE     32     29     25     17
D344V11, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        3      1      1      2
  ZC3H13 WILD-TYPE     51      9     23     20
D344V12, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(345) Variable = PRKCH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCH MUTATED        1      0      1      1
  PRKCH WILD-TYPE     45     58     63     42
D345V1, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCH MUTATED        0      1      2
  PRKCH WILD-TYPE     51     82     75
D345V2, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             0              51
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCH MUTATED       10      3      1      0
  PRKCH WILD-TYPE    168    180    100     20
D345V3, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1            10             168
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCH MUTATED        5      1      5
  PRKCH WILD-TYPE     82     79     95
D345V4, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCH MUTATED        1      7      5
  PRKCH WILD-TYPE     88    153    133
D345V5, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCH MUTATED        6      6      1
  PRKCH WILD-TYPE    176    127     71
D345V6, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCH MUTATED        3      4      4      3
  PRKCH WILD-TYPE    109     92     88    183
D345V7, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKCH MUTATED        3      1      5      0      3      2      0
  PRKCH WILD-TYPE     57     49     44     40     60    123     99
D345V8, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCH MUTATED        6      4      0      4
  PRKCH WILD-TYPE    124     74     68    192
D345V9, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKCH MUTATED        1      4      2      2      2      2      1      0
  PRKCH WILD-TYPE     39     58     26     78     67     46     42     28
                 vv
clus              CLUS_9
  PRKCH MUTATED        0
  PRKCH WILD-TYPE     74
D345V10, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCH MUTATED        0      2      0      2
  PRKCH WILD-TYPE     33     29     27     17
D345V11, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCH MUTATED        2      0      1      1
  PRKCH WILD-TYPE     52     10     23     21
D345V12, multiclass
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(346) Variable = FNDC7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        1      0      0      0
  FNDC7 WILD-TYPE     45     58     64     43
D346V1, multiclass
[1] "Remove cluster labels:" "FNDC7 MUTATED"         
clus
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC7 MUTATED        1      0      0
  FNDC7 WILD-TYPE     50     83     77
D346V2, multiclass
[1] "Remove cluster labels:" "FNDC7 MUTATED"         
clus
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        7      2      0      0
  FNDC7 WILD-TYPE    171    181    101     20
D346V3, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC7 MUTATED        3      1      4
  FNDC7 WILD-TYPE     84     79     96
D346V4, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC7 MUTATED        0      2      5
  FNDC7 WILD-TYPE     89    158    133
D346V5, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC7 MUTATED        3      3      1
  FNDC7 WILD-TYPE    179    130     71
D346V6, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        2      4      2      1
  FNDC7 WILD-TYPE    110     92     90    185
D346V7, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FNDC7 MUTATED        1      3      3      0      1      0      1
  FNDC7 WILD-TYPE     59     47     46     40     62    125     98
D346V8, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        6      1      0      2
  FNDC7 WILD-TYPE    124     77     68    194
D346V9, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FNDC7 MUTATED        1      2      0      3      2      0      0      0
  FNDC7 WILD-TYPE     39     60     28     77     67     48     43     28
                 vv
clus              CLUS_9
  FNDC7 MUTATED        1
  FNDC7 WILD-TYPE     73
D346V10, multiclass
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        0      0      0      0
  FNDC7 WILD-TYPE     33     31     27     19
D346V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC7 MUTATED        0      0      0      0
  FNDC7 WILD-TYPE     54     10     24     22
D346V12, multiclass

Clustering(347) Variable = ZNF438 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF438 MUTATED        1      0      0      2
  ZNF438 WILD-TYPE     45     58     64     41
D347V1, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF438 MUTATED        2      0      1
  ZNF438 WILD-TYPE     49     83     76
D347V2, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF438 MUTATED        7      2      3      1
  ZNF438 WILD-TYPE    171    181     98     19
D347V3, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF438 MUTATED        3      4      3
  ZNF438 WILD-TYPE     84     76     97
D347V4, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              4               76
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF438 MUTATED        1      3      7
  ZNF438 WILD-TYPE     88    157    131
D347V5, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF438 MUTATED        9      2      0
  ZNF438 WILD-TYPE    173    131     72
D347V6, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF438 MUTATED        2      3      4      4
  ZNF438 WILD-TYPE    110     93     88    182
D347V7, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF438 MUTATED        2      2      3      1      2      1      2
  ZNF438 WILD-TYPE     58     48     46     39     61    124     97
D347V8, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF438 MUTATED        4      3      1      4
  ZNF438 WILD-TYPE    126     75     67    192
D347V9, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF438 MUTATED        1      3      2      0      4      1      0      1
  ZNF438 WILD-TYPE     39     59     26     80     65     47     43     27
                  vv
clus               CLUS_9
  ZNF438 MUTATED        0
  ZNF438 WILD-TYPE     74
D347V10, multiclass
        clus
vv       ZNF438 MUTATED ZNF438 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF438 MUTATED        0      1      1      0
  ZNF438 WILD-TYPE     33     30     26     19
D347V11, multiclass
[1] "Remove cluster labels:" "ZNF438 MUTATED"        
clus
  ZNF438 MUTATED ZNF438 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF438 MUTATED        1      0      1      0
  ZNF438 WILD-TYPE     53     10     23     22
D347V12, multiclass
[1] "Remove cluster labels:" "ZNF438 MUTATED"        
clus
  ZNF438 MUTATED ZNF438 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" "ZNF438 WILD-TYPE" 

Clustering(348) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      8      6      5
  NRAS WILD-TYPE     46     50     58     38
D348V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             46
  CLUS_2            8             50
  CLUS_3            6             58
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        2      6     11
  NRAS WILD-TYPE     49     77     66
D348V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             49
  CLUS_2            6             77
  CLUS_3           11             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED       15     23      5      1
  NRAS WILD-TYPE    163    160     96     19
D348V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           15            163
  CLUS_2           23            160
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        7      8      9
  NRAS WILD-TYPE     80     72     91
D348V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             80
  CLUS_2            8             72
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        6     17     14
  NRAS WILD-TYPE     83    143    124
D348V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             83
  CLUS_2           17            143
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED       16     15      6
  NRAS WILD-TYPE    166    118     66
D348V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           16            166
  CLUS_2           15            118
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED       11     10      6     16
  NRAS WILD-TYPE    101     86     86    170
D348V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           11            101
  CLUS_2           10             86
  CLUS_3            6             86
  CLUS_4           16            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        7      6      1      5      5     11      8
  NRAS WILD-TYPE     53     44     48     35     58    114     91
D348V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             53
  CLUS_2            6             44
  CLUS_3            1             48
  CLUS_4            5             35
  CLUS_5            5             58
  CLUS_6           11            114
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED       17      5      7     13
  NRAS WILD-TYPE    113     73     61    183
D348V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           17            113
  CLUS_2            5             73
  CLUS_3            7             61
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NRAS MUTATED        3      5      3      5      4      6      6      4      6
  NRAS WILD-TYPE     37     57     25     75     65     42     37     24     68
D348V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            3             37
  CLUS_2            5             57
  CLUS_3            3             25
  CLUS_4            5             75
  CLUS_5            4             65
  CLUS_6            6             42
  CLUS_7            6             37
  CLUS_8            4             24
  CLUS_9            6             68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        2      3      2      1
  NRAS WILD-TYPE     31     28     25     18
D348V11, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        3      1      1      3
  NRAS WILD-TYPE     51      9     23     19
D348V12, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(349) Variable = HIST1H1E MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        0      0      0      0
  HIST1H1E WILD-TYPE     46     58     64     43
D349V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1E MUTATED        0      0      0
  HIST1H1E WILD-TYPE     51     83     77
D349V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        5      0      1      0
  HIST1H1E WILD-TYPE    173    183    100     20
D349V3, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                5                173
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1E MUTATED        1      0      5
  HIST1H1E WILD-TYPE     86     80     95
D349V4, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                0                 80
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1E MUTATED        0      4      2
  HIST1H1E WILD-TYPE     89    156    136
D349V5, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                4                156
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1E MUTATED        3      3      0
  HIST1H1E WILD-TYPE    179    130     72
D349V6, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                3                179
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        0      4      2      0
  HIST1H1E WILD-TYPE    112     92     90    186
D349V7, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                0                112
  CLUS_2                4                 92
  CLUS_3                2                 90
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1E MUTATED        0      0      3      0      2      0      1
  HIST1H1E WILD-TYPE     60     50     46     40     61    125     98
D349V8, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        4      1      0      1
  HIST1H1E WILD-TYPE    126     77     68    195
D349V9, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                4                126
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H1E MUTATED        1      2      1      0      2      0      0      0
  HIST1H1E WILD-TYPE     39     60     27     80     67     48     43     28
                    vv
clus                 CLUS_9
  HIST1H1E MUTATED        0
  HIST1H1E WILD-TYPE     74
D349V10, multiclass
        clus
vv       HIST1H1E MUTATED HIST1H1E WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        0      0      0      1
  HIST1H1E WILD-TYPE     33     31     27     18
D349V11, multiclass
[1] "Remove cluster labels:" "HIST1H1E MUTATED"      
clus
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H1E WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1E MUTATED        0      0      1      0
  HIST1H1E WILD-TYPE     54     10     23     22
D349V12, multiclass
[1] "Remove cluster labels:" "HIST1H1E MUTATED"      
clus
  HIST1H1E MUTATED HIST1H1E WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" "HIST1H1E WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H1E WILD-TYPE" 

Clustering(350) Variable = ZAK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAK MUTATED        2      0      0      2
  ZAK WILD-TYPE     44     58     64     41
D350V1, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZAK MUTATED        2      1      1
  ZAK WILD-TYPE     49     82     76
D350V2, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAK MUTATED        6      1      2      0
  ZAK WILD-TYPE    172    182     99     20
D350V3, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           6           172
  CLUS_2           1           182
  CLUS_3           2            99
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZAK MUTATED        2      0      3
  ZAK WILD-TYPE     85     80     97
D350V4, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           2            85
  CLUS_2           0            80
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZAK MUTATED        1      4      3
  ZAK WILD-TYPE     88    156    135
D350V5, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           1            88
  CLUS_2           4           156
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZAK MUTATED        2      3      3
  ZAK WILD-TYPE    180    130     69
D350V6, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           2           180
  CLUS_2           3           130
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAK MUTATED        0      3      2      4
  ZAK WILD-TYPE    112     93     90    182
D350V7, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           0           112
  CLUS_2           3            93
  CLUS_3           2            90
  CLUS_4           4           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZAK MUTATED        1      3      0      1      1      0      3
  ZAK WILD-TYPE     59     47     49     39     62    125     96
D350V8, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           1            59
  CLUS_2           3            47
  CLUS_3           0            49
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAK MUTATED        3      2      0      4
  ZAK WILD-TYPE    127     76     68    192
D350V9, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           3           127
  CLUS_2           2            76
  CLUS_3           0            68
  CLUS_4           4           192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZAK MUTATED        2      1      1      1      3      0      1      0      0
  ZAK WILD-TYPE     38     61     27     79     66     48     42     28     74
D350V10, multiclass
        clus
vv       ZAK MUTATED ZAK WILD-TYPE
  CLUS_1           2            38
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           1            79
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAK MUTATED        0      1      0      0
  ZAK WILD-TYPE     33     30     27     19
D350V11, multiclass
[1] "Remove cluster labels:" "ZAK MUTATED"           
clus
  ZAK MUTATED ZAK WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3732 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAK MUTATED        0      0      0      1
  ZAK WILD-TYPE     54     10     24     21
D350V12, multiclass
[1] "Remove cluster labels:" "ZAK MUTATED"           
clus
  ZAK MUTATED ZAK WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3732 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" "ZAK WILD-TYPE" 

Clustering(351) Variable = SLC24A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A2 MUTATED        4      1      1      1
  SLC24A2 WILD-TYPE     42     57     63     42
D351V1, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A2 MUTATED        4      2      1
  SLC24A2 WILD-TYPE     47     81     76
D351V2, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A2 MUTATED       13      2      4      0
  SLC24A2 WILD-TYPE    165    181     97     20
D351V3, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               2               181
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A2 MUTATED        4      3      5
  SLC24A2 WILD-TYPE     83     77     95
D351V4, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A2 MUTATED        4      5      8
  SLC24A2 WILD-TYPE     85    155    130
D351V5, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               5               155
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A2 MUTATED        7      7      3
  SLC24A2 WILD-TYPE    175    126     69
D351V6, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               7               126
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A2 MUTATED        4      4      5      6
  SLC24A2 WILD-TYPE    108     92     87    180
D351V7, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               4                92
  CLUS_3               5                87
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC24A2 MUTATED        2      3      4      1      2      1      6
  SLC24A2 WILD-TYPE     58     47     45     39     61    124     93
D351V8, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A2 MUTATED        2      5      3      8
  SLC24A2 WILD-TYPE    128     73     65    188
D351V9, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               5                73
  CLUS_3               3                65
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC24A2 MUTATED        1      4      2      3      4      0      2      1
  SLC24A2 WILD-TYPE     39     58     26     77     65     48     41     27
                   vv
clus                CLUS_9
  SLC24A2 MUTATED        1
  SLC24A2 WILD-TYPE     73
D351V10, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A2 MUTATED        2      0      1      1
  SLC24A2 WILD-TYPE     31     31     26     18
D351V11, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A2 MUTATED        2      0      0      2
  SLC24A2 WILD-TYPE     52     10     24     20
D351V12, multiclass
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(352) Variable = HORMAD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        0      0      0      2
  HORMAD1 WILD-TYPE     46     58     64     41
D352V1, multiclass
[1] "Remove cluster labels:" "HORMAD1 MUTATED"       
clus
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AY-4071 
"HORMAD1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        1      1      0
  HORMAD1 WILD-TYPE     50     82     77
D352V2, multiclass
[1] "Remove cluster labels:" "HORMAD1 MUTATED"       
clus
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" "HORMAD1 WILD-TYPE" 
       TCGA-AY-4071 
"HORMAD1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        9      3      0      1
  HORMAD1 WILD-TYPE    169    180    101     19
D352V3, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        2      1      8
  HORMAD1 WILD-TYPE     85     79     92
D352V4, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        1      6      4
  HORMAD1 WILD-TYPE     88    154    134
D352V5, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        7      3      1
  HORMAD1 WILD-TYPE    175    130     71
D352V6, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        2      4      5      2
  HORMAD1 WILD-TYPE    110     92     87    184
D352V7, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               4                92
  CLUS_3               5                87
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HORMAD1 MUTATED        2      2      5      1      1      0      2
  HORMAD1 WILD-TYPE     58     48     44     39     62    125     97
D352V8, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        6      3      1      2
  HORMAD1 WILD-TYPE    124     75     67    194
D352V9, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HORMAD1 MUTATED        1      2      1      3      3      0      2      0
  HORMAD1 WILD-TYPE     39     60     27     77     66     48     41     28
                   vv
clus                CLUS_9
  HORMAD1 MUTATED        0
  HORMAD1 WILD-TYPE     74
D352V10, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        0      1      2      5
  HORMAD1 WILD-TYPE     33     30     25     14
D352V11, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               2                25
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        3      0      5      0
  HORMAD1 WILD-TYPE     51     10     19     22
D352V12, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               5                19
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(353) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       16      0      1      6
  BRAF WILD-TYPE     30     58     63     37
D353V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           16             30
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED       18      0      5
  BRAF WILD-TYPE     33     83     72
D353V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           18             33
  CLUS_2            0             83
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       67     25     13      3
  BRAF WILD-TYPE    111    158     88     17
D353V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           67            111
  CLUS_2           25            158
  CLUS_3           13             88
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED       26     14     45
  BRAF WILD-TYPE     61     66     55
D353V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           26             61
  CLUS_2           14             66
  CLUS_3           45             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED       20     30     42
  BRAF WILD-TYPE     69    130     96
D353V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           20             69
  CLUS_2           30            130
  CLUS_3           42             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED       48     32     12
  BRAF WILD-TYPE    134    101     60
D353V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           48            134
  CLUS_2           32            101
  CLUS_3           12             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       20     33     33     23
  BRAF WILD-TYPE     92     63     59    163
D353V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           20             92
  CLUS_2           33             63
  CLUS_3           33             59
  CLUS_4           23            163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRAF MUTATED       10     16     32     11     17      2     21
  BRAF WILD-TYPE     50     34     17     29     46    123     78
D353V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           10             50
  CLUS_2           16             34
  CLUS_3           32             17
  CLUS_4           11             29
  CLUS_5           17             46
  CLUS_6            2            123
  CLUS_7           21             78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       53     19      7     30
  BRAF WILD-TYPE     77     59     61    166
D353V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           53             77
  CLUS_2           19             59
  CLUS_3            7             61
  CLUS_4           30            166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BRAF MUTATED       17     22      6     10     32      5     11      5      1
  BRAF WILD-TYPE     23     40     22     70     37     43     32     23     73
D353V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           17             23
  CLUS_2           22             40
  CLUS_3            6             22
  CLUS_4           10             70
  CLUS_5           32             37
  CLUS_6            5             43
  CLUS_7           11             32
  CLUS_8            5             23
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       12      7      2     10
  BRAF WILD-TYPE     21     24     25      9
D353V11, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           12             21
  CLUS_2            7             24
  CLUS_3            2             25
  CLUS_4           10              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       19      4      5      3
  BRAF WILD-TYPE     35      6     19     19
D353V12, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           19             35
  CLUS_2            4              6
  CLUS_3            5             19
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(354) Variable = DDX59 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX59 MUTATED        0      1      0      0
  DDX59 WILD-TYPE     46     57     64     43
D354V1, multiclass
[1] "Remove cluster labels:" "DDX59 MUTATED"         
clus
  DDX59 MUTATED DDX59 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX59 MUTATED        0      1      0
  DDX59 WILD-TYPE     51     82     77
D354V2, multiclass
[1] "Remove cluster labels:" "DDX59 MUTATED"         
clus
  DDX59 MUTATED DDX59 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DDX59 WILD-TYPE" "DDX59 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX59 MUTATED       10      1      1      1
  DDX59 WILD-TYPE    168    182    100     19
D354V3, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX59 MUTATED        6      0      6
  DDX59 WILD-TYPE     81     80     94
D354V4, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX59 MUTATED        1      2      8
  DDX59 WILD-TYPE     88    158    130
D354V5, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX59 MUTATED        7      3      1
  DDX59 WILD-TYPE    175    130     71
D354V6, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX59 MUTATED        0      6      5      2
  DDX59 WILD-TYPE    112     90     87    184
D354V7, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX59 MUTATED        0      2      6      2      1      1      1
  DDX59 WILD-TYPE     60     48     43     38     62    124     98
D354V8, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX59 MUTATED        5      3      1      4
  DDX59 WILD-TYPE    125     75     67    192
D354V9, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX59 MUTATED        2      3      0      0      2      0      3      0
  DDX59 WILD-TYPE     38     59     28     80     67     48     40     28
                 vv
clus              CLUS_9
  DDX59 MUTATED        3
  DDX59 WILD-TYPE     71
D354V10, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX59 MUTATED        0      1      1      1
  DDX59 WILD-TYPE     33     30     26     18
D354V11, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX59 MUTATED        1      0      2      0
  DDX59 WILD-TYPE     53     10     22     22
D354V12, multiclass
        clus
vv       DDX59 MUTATED DDX59 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(355) Variable = NLRP13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP13 MUTATED        4      1      0      4
  NLRP13 WILD-TYPE     42     57     64     39
D355V1, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP13 MUTATED        3      4      2
  NLRP13 WILD-TYPE     48     79     75
D355V2, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              4               79
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP13 MUTATED       17      6      6      2
  NLRP13 WILD-TYPE    161    177     95     18
D355V3, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              6              177
  CLUS_3              6               95
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP13 MUTATED       10      5      6
  NLRP13 WILD-TYPE     77     75     94
D355V4, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1             10               77
  CLUS_2              5               75
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP13 MUTATED        2     12      9
  NLRP13 WILD-TYPE     87    148    129
D355V5, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              2               87
  CLUS_2             12              148
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP13 MUTATED       12      8      3
  NLRP13 WILD-TYPE    170    125     69
D355V6, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP13 MUTATED        6      8      7      9
  NLRP13 WILD-TYPE    106     88     85    177
D355V7, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              8               88
  CLUS_3              7               85
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP13 MUTATED        3      5      7      3      3      2      7
  NLRP13 WILD-TYPE     57     45     42     37     60    123     92
D355V8, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              5               45
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP13 MUTATED       11      5      3     11
  NLRP13 WILD-TYPE    119     73     65    185
D355V9, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1             11              119
  CLUS_2              5               73
  CLUS_3              3               65
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NLRP13 MUTATED        4      6      5      3      5      1      2      1
  NLRP13 WILD-TYPE     36     56     23     77     64     47     41     27
                  vv
clus               CLUS_9
  NLRP13 MUTATED        3
  NLRP13 WILD-TYPE     71
D355V10, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              6               56
  CLUS_3              5               23
  CLUS_4              3               77
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP13 MUTATED        3      1      2      1
  NLRP13 WILD-TYPE     30     30     25     18
D355V11, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP13 MUTATED        4      0      2      1
  NLRP13 WILD-TYPE     50     10     22     21
D355V12, multiclass
        clus
vv       NLRP13 MUTATED NLRP13 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(356) Variable = MKI67 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED       12      0      1      5
  MKI67 WILD-TYPE     34     58     63     38
D356V1, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1            12              34
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED       14      2      2
  MKI67 WILD-TYPE     37     81     75
D356V2, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1            14              37
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED       29      7      7      0
  MKI67 WILD-TYPE    149    176     94     20
D356V3, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1            29             149
  CLUS_2             7             176
  CLUS_3             7              94
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED       12      5     10
  MKI67 WILD-TYPE     75     75     90
D356V4, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1            12              75
  CLUS_2             5              75
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED        4     14     17
  MKI67 WILD-TYPE     85    146    121
D356V5, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            14             146
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKI67 MUTATED       18     11      6
  MKI67 WILD-TYPE    164    122     66
D356V6, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1            18             164
  CLUS_2            11             122
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        8      9     10     17
  MKI67 WILD-TYPE    104     87     82    169
D356V7, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             9              87
  CLUS_3            10              82
  CLUS_4            17             169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKI67 MUTATED        4      2     10      6      3      2     17
  MKI67 WILD-TYPE     56     48     39     34     60    123     82
D356V8, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3            10              39
  CLUS_4             6              34
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7            17              82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED       13      5      3     19
  MKI67 WILD-TYPE    117     73     65    177
D356V9, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1            13             117
  CLUS_2             5              73
  CLUS_3             3              65
  CLUS_4            19             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MKI67 MUTATED        3      5      3      7     15      3      2      1
  MKI67 WILD-TYPE     37     57     25     73     54     45     41     27
                 vv
clus              CLUS_9
  MKI67 MUTATED        1
  MKI67 WILD-TYPE     73
D356V10, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             7              73
  CLUS_5            15              54
  CLUS_6             3              45
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        0      3      1      6
  MKI67 WILD-TYPE     33     28     26     13
D356V11, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKI67 MUTATED        4      0      4      2
  MKI67 WILD-TYPE     50     10     20     20
D356V12, multiclass
        clus
vv       MKI67 MUTATED MKI67 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(357) Variable = MET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        2      0      0      3
  MET WILD-TYPE     44     58     64     40
D357V1, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        2      2      1
  MET WILD-TYPE     49     81     76
D357V2, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           2            49
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED       23     15      9      1
  MET WILD-TYPE    155    168     92     19
D357V3, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          23           155
  CLUS_2          15           168
  CLUS_3           9            92
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED       12     12     19
  MET WILD-TYPE     75     68     81
D357V4, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          12            75
  CLUS_2          12            68
  CLUS_3          19            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED        6     16     17
  MET WILD-TYPE     83    144    121
D357V5, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           6            83
  CLUS_2          16           144
  CLUS_3          17           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MET MUTATED       22     13      4
  MET WILD-TYPE    160    120     68
D357V6, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          22           160
  CLUS_2          13           120
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED       19     17      7      6
  MET WILD-TYPE     93     79     85    180
D357V7, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          19            93
  CLUS_2          17            79
  CLUS_3           7            85
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MET MUTATED       11      8     10      4     10      2      4
  MET WILD-TYPE     49     42     39     36     53    123     95
D357V8, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          11            49
  CLUS_2           8            42
  CLUS_3          10            39
  CLUS_4           4            36
  CLUS_5          10            53
  CLUS_6           2           123
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED       26     12      4      6
  MET WILD-TYPE    104     66     64    190
D357V9, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1          26           104
  CLUS_2          12            66
  CLUS_3           4            64
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MET MUTATED        8      9      6      7      6      5      6      0      1
  MET WILD-TYPE     32     53     22     73     63     43     37     28     73
D357V10, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           8            32
  CLUS_2           9            53
  CLUS_3           6            22
  CLUS_4           7            73
  CLUS_5           6            63
  CLUS_6           5            43
  CLUS_7           6            37
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        6      8      2      6
  MET WILD-TYPE     27     23     25     13
D357V11, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           6            27
  CLUS_2           8            23
  CLUS_3           2            25
  CLUS_4           6            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MET MUTATED        9      3      4      6
  MET WILD-TYPE     45      7     20     16
D357V12, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           9            45
  CLUS_2           3             7
  CLUS_3           4            20
  CLUS_4           6            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(358) Variable = PIK3C2A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2A MUTATED        3      1      0      1
  PIK3C2A WILD-TYPE     43     57     64     42
D358V1, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2A MUTATED        3      1      1
  PIK3C2A WILD-TYPE     48     82     76
D358V2, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2A MUTATED       16      5      1      0
  PIK3C2A WILD-TYPE    162    178    100     20
D358V3, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1              16               162
  CLUS_2               5               178
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2A MUTATED        6      4      7
  PIK3C2A WILD-TYPE     81     76     93
D358V4, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               6                81
  CLUS_2               4                76
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2A MUTATED        2      8      8
  PIK3C2A WILD-TYPE     87    152    130
D358V5, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               2                87
  CLUS_2               8               152
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2A MUTATED       11      4      3
  PIK3C2A WILD-TYPE    171    129     69
D358V6, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1              11               171
  CLUS_2               4               129
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2A MUTATED        5      7      5      5
  PIK3C2A WILD-TYPE    107     89     87    181
D358V7, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               5               107
  CLUS_2               7                89
  CLUS_3               5                87
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3C2A MUTATED        3      4      6      4      1      1      3
  PIK3C2A WILD-TYPE     57     46     43     36     62    124     96
D358V8, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               3                57
  CLUS_2               4                46
  CLUS_3               6                43
  CLUS_4               4                36
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2A MUTATED       12      3      2      5
  PIK3C2A WILD-TYPE    118     75     66    191
D358V9, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1              12               118
  CLUS_2               3                75
  CLUS_3               2                66
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3C2A MUTATED        2      3      1      3      7      2      2      1
  PIK3C2A WILD-TYPE     38     59     27     77     62     46     41     27
                   vv
clus                CLUS_9
  PIK3C2A MUTATED        1
  PIK3C2A WILD-TYPE     73
D358V10, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               7                62
  CLUS_6               2                46
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2A MUTATED        2      0      1      3
  PIK3C2A WILD-TYPE     31     31     26     16
D358V11, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2A MUTATED        2      0      4      0
  PIK3C2A WILD-TYPE     52     10     20     22
D358V12, multiclass
        clus
vv       PIK3C2A MUTATED PIK3C2A WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               4                20
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(359) Variable = ERBB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        6      3      1      2
  ERBB3 WILD-TYPE     40     55     63     41
D359V1, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             3              55
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        7      2      3
  ERBB3 WILD-TYPE     44     81     74
D359V2, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED       19      3      7      1
  ERBB3 WILD-TYPE    159    180     94     19
D359V3, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             3             180
  CLUS_3             7              94
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        8      1      7
  ERBB3 WILD-TYPE     79     79     93
D359V4, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        7      8     11
  ERBB3 WILD-TYPE     82    152    127
D359V5, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             7              82
  CLUS_2             8             152
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       12      8      6
  ERBB3 WILD-TYPE    170    125     66
D359V6, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            12             170
  CLUS_2             8             125
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        1      9      6     13
  ERBB3 WILD-TYPE    111     87     86    173
D359V7, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             9              87
  CLUS_3             6              86
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERBB3 MUTATED        0      2      4      3      5      4     11
  ERBB3 WILD-TYPE     60     48     45     37     58    121     88
D359V8, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             3              37
  CLUS_5             5              58
  CLUS_6             4             121
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        9      4      0     15
  ERBB3 WILD-TYPE    121     74     68    181
D359V9, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4            15             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERBB3 MUTATED        5      6      3      1      7      4      0      1
  ERBB3 WILD-TYPE     35     56     25     79     62     44     43     27
                 vv
clus              CLUS_9
  ERBB3 MUTATED        1
  ERBB3 WILD-TYPE     73
D359V10, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             4              44
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        0      3      0      0
  ERBB3 WILD-TYPE     33     28     27     19
D359V11, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        3      0      0      0
  ERBB3 WILD-TYPE     51     10     24     22
D359V12, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(360) Variable = CENPF MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED        6      0      0      9
  CENPF WILD-TYPE     40     58     64     34
D360V1, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             6              40
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             9              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPF MUTATED       11      1      3
  CENPF WILD-TYPE     40     82     74
D360V2, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1            11              40
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED       27      8      9      1
  CENPF WILD-TYPE    151    175     92     19
D360V3, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1            27             151
  CLUS_2             8             175
  CLUS_3             9              92
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPF MUTATED        9      8     14
  CENPF WILD-TYPE     78     72     86
D360V4, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             9              78
  CLUS_2             8              72
  CLUS_3            14              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPF MUTATED        3     16     21
  CENPF WILD-TYPE     86    144    117
D360V5, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             3              86
  CLUS_2            16             144
  CLUS_3            21             117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPF MUTATED       27     11      2
  CENPF WILD-TYPE    155    122     70
D360V6, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1            27             155
  CLUS_2            11             122
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED        7     14      9     16
  CENPF WILD-TYPE    105     82     83    170
D360V7, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             7             105
  CLUS_2            14              82
  CLUS_3             9              83
  CLUS_4            16             170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CENPF MUTATED        4      8      9      4      5      1     15
  CENPF WILD-TYPE     56     42     40     36     58    124     84
D360V8, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             4              56
  CLUS_2             8              42
  CLUS_3             9              40
  CLUS_4             4              36
  CLUS_5             5              58
  CLUS_6             1             124
  CLUS_7            15              84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED       18      7      3     15
  CENPF WILD-TYPE    112     71     65    181
D360V9, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1            18             112
  CLUS_2             7              71
  CLUS_3             3              65
  CLUS_4            15             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CENPF MUTATED        3     10      5      4     13      0      5      0
  CENPF WILD-TYPE     37     52     23     76     56     48     38     28
                 vv
clus              CLUS_9
  CENPF MUTATED        3
  CENPF WILD-TYPE     71
D360V10, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             3              37
  CLUS_2            10              52
  CLUS_3             5              23
  CLUS_4             4              76
  CLUS_5            13              56
  CLUS_6             0              48
  CLUS_7             5              38
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED        3      4      0      1
  CENPF WILD-TYPE     30     27     27     18
D360V11, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              27
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPF MUTATED        3      2      1      2
  CENPF WILD-TYPE     51      8     23     20
D360V12, multiclass
        clus
vv       CENPF MUTATED CENPF WILD-TYPE
  CLUS_1             3              51
  CLUS_2             2               8
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(361) Variable = TXNDC15 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC15 MUTATED        1      0      0      2
  TXNDC15 WILD-TYPE     45     58     64     41
D361V1, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC15 MUTATED        2      0      1
  TXNDC15 WILD-TYPE     49     83     76
D361V2, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC15 MUTATED        4      1      2      0
  TXNDC15 WILD-TYPE    174    182     99     20
D361V3, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC15 MUTATED        1      1      2
  TXNDC15 WILD-TYPE     86     79     98
D361V4, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC15 MUTATED        0      2      4
  TXNDC15 WILD-TYPE     89    158    134
D361V5, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC15 MUTATED        4      2      0
  TXNDC15 WILD-TYPE    178    131     72
D361V6, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC15 MUTATED        3      1      0      3
  TXNDC15 WILD-TYPE    109     95     92    183
D361V7, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               1                95
  CLUS_3               0                92
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNDC15 MUTATED        3      0      0      1      0      0      3
  TXNDC15 WILD-TYPE     57     50     49     39     63    125     96
D361V8, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               0                50
  CLUS_3               0                49
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC15 MUTATED        2      1      0      3
  TXNDC15 WILD-TYPE    128     77     68    193
D361V9, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXNDC15 MUTATED        1      0      0      2      3      0      0      0
  TXNDC15 WILD-TYPE     39     62     28     78     66     48     43     28
                   vv
clus                CLUS_9
  TXNDC15 MUTATED        0
  TXNDC15 WILD-TYPE     74
D361V10, multiclass
        clus
vv       TXNDC15 MUTATED TXNDC15 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC15 MUTATED        1      0      0      0
  TXNDC15 WILD-TYPE     32     31     27     19
D361V11, multiclass
[1] "Remove cluster labels:" "TXNDC15 MUTATED"       
clus
  TXNDC15 MUTATED TXNDC15 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A28F 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-G5-6641 
"TXNDC15 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC15 MUTATED        1      0      0      0
  TXNDC15 WILD-TYPE     53     10     24     22
D361V12, multiclass
[1] "Remove cluster labels:" "TXNDC15 MUTATED"       
clus
  TXNDC15 MUTATED TXNDC15 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A28F 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" "TXNDC15 WILD-TYPE" 
       TCGA-G5-6641 
"TXNDC15 WILD-TYPE" 

Clustering(362) Variable = TSHR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHR MUTATED        2      0      1      3
  TSHR WILD-TYPE     44     58     63     40
D362V1, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSHR MUTATED        4      1      1
  TSHR WILD-TYPE     47     82     76
D362V2, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHR MUTATED       26     13      8      0
  TSHR WILD-TYPE    152    170     93     20
D362V3, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1           26            152
  CLUS_2           13            170
  CLUS_3            8             93
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSHR MUTATED       12     12     16
  TSHR WILD-TYPE     75     68     84
D362V4, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1           12             75
  CLUS_2           12             68
  CLUS_3           16             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSHR MUTATED        6     12     20
  TSHR WILD-TYPE     83    148    118
D362V5, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1            6             83
  CLUS_2           12            148
  CLUS_3           20            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSHR MUTATED       21     12      5
  TSHR WILD-TYPE    161    121     67
D362V6, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1           21            161
  CLUS_2           12            121
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHR MUTATED       17     13     12      6
  TSHR WILD-TYPE     95     83     80    180
D362V7, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1           17             95
  CLUS_2           13             83
  CLUS_3           12             80
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSHR MUTATED       11     11      9      3      8      0      6
  TSHR WILD-TYPE     49     39     40     37     55    125     93
D362V8, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1           11             49
  CLUS_2           11             39
  CLUS_3            9             40
  CLUS_4            3             37
  CLUS_5            8             55
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHR MUTATED       22     10      5     10
  TSHR WILD-TYPE    108     68     63    186
D362V9, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1           22            108
  CLUS_2           10             68
  CLUS_3            5             63
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TSHR MUTATED        5     10      5      8      8      3      5      2      1
  TSHR WILD-TYPE     35     52     23     72     61     45     38     26     73
D362V10, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1            5             35
  CLUS_2           10             52
  CLUS_3            5             23
  CLUS_4            8             72
  CLUS_5            8             61
  CLUS_6            3             45
  CLUS_7            5             38
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHR MUTATED        6      3      2      4
  TSHR WILD-TYPE     27     28     25     15
D362V11, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1            6             27
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHR MUTATED        8      0      4      3
  TSHR WILD-TYPE     46     10     20     19
D362V12, multiclass
        clus
vv       TSHR MUTATED TSHR WILD-TYPE
  CLUS_1            8             46
  CLUS_2            0             10
  CLUS_3            4             20
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(363) Variable = KIAA1012 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1012 MUTATED        4      0      1      2
  KIAA1012 WILD-TYPE     42     58     63     41
D363V1, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1012 MUTATED        4      1      2
  KIAA1012 WILD-TYPE     47     82     75
D363V2, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1012 MUTATED       15      5      1      3
  KIAA1012 WILD-TYPE    163    178    100     17
D363V3, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1               15                163
  CLUS_2                5                178
  CLUS_3                1                100
  CLUS_4                3                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1012 MUTATED        8      3      7
  KIAA1012 WILD-TYPE     79     77     93
D363V4, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                3                 77
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1012 MUTATED        3      7     11
  KIAA1012 WILD-TYPE     86    153    127
D363V5, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                7                153
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1012 MUTATED       10      7      4
  KIAA1012 WILD-TYPE    172    126     68
D363V6, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1               10                172
  CLUS_2                7                126
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1012 MUTATED        5      7      6      7
  KIAA1012 WILD-TYPE    107     89     86    179
D363V7, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                5                107
  CLUS_2                7                 89
  CLUS_3                6                 86
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1012 MUTATED        4      6      6      1      2      1      5
  KIAA1012 WILD-TYPE     56     44     43     39     61    124     94
D363V8, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                4                 56
  CLUS_2                6                 44
  CLUS_3                6                 43
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1012 MUTATED       11      3      2      9
  KIAA1012 WILD-TYPE    119     75     66    187
D363V9, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1               11                119
  CLUS_2                3                 75
  CLUS_3                2                 66
  CLUS_4                9                187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1012 MUTATED        4      6      1      0      7      2      2      1
  KIAA1012 WILD-TYPE     36     56     27     80     62     46     41     27
                    vv
clus                 CLUS_9
  KIAA1012 MUTATED        2
  KIAA1012 WILD-TYPE     72
D363V10, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                6                 56
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                7                 62
  CLUS_6                2                 46
  CLUS_7                2                 41
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1012 MUTATED        3      0      0      1
  KIAA1012 WILD-TYPE     30     31     27     18
D363V11, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1012 MUTATED        4      0      0      0
  KIAA1012 WILD-TYPE     50     10     24     22
D363V12, multiclass
        clus
vv       KIAA1012 MUTATED KIAA1012 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(364) Variable = CHML MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHML MUTATED        3      1      0      1
  CHML WILD-TYPE     43     57     64     42
D364V1, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHML MUTATED        4      1      0
  CHML WILD-TYPE     47     82     77
D364V2, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHML MUTATED       13      5      5      1
  CHML WILD-TYPE    165    178     96     19
D364V3, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1           13            165
  CLUS_2            5            178
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHML MUTATED       11      2      7
  CHML WILD-TYPE     76     78     93
D364V4, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1           11             76
  CLUS_2            2             78
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHML MUTATED        5      6      8
  CHML WILD-TYPE     84    154    130
D364V5, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            5             84
  CLUS_2            6            154
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHML MUTATED       10      2      7
  CHML WILD-TYPE    172    131     65
D364V6, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1           10            172
  CLUS_2            2            131
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHML MUTATED        3      6     11      4
  CHML WILD-TYPE    109     90     81    182
D364V7, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3           11             81
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHML MUTATED        2      4      5      3      5      1      4
  CHML WILD-TYPE     58     46     44     37     58    124     95
D364V8, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            2             58
  CLUS_2            4             46
  CLUS_3            5             44
  CLUS_4            3             37
  CLUS_5            5             58
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHML MUTATED        9      7      2      6
  CHML WILD-TYPE    121     71     66    190
D364V9, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            9            121
  CLUS_2            7             71
  CLUS_3            2             66
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CHML MUTATED        3      6      0      5      3      2      3      1      1
  CHML WILD-TYPE     37     56     28     75     66     46     40     27     73
D364V10, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            3             37
  CLUS_2            6             56
  CLUS_3            0             28
  CLUS_4            5             75
  CLUS_5            3             66
  CLUS_6            2             46
  CLUS_7            3             40
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHML MUTATED        3      2      1      3
  CHML WILD-TYPE     30     29     26     16
D364V11, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHML MUTATED        6      1      0      2
  CHML WILD-TYPE     48      9     24     20
D364V12, multiclass
        clus
vv       CHML MUTATED CHML WILD-TYPE
  CLUS_1            6             48
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(365) Variable = TGFBR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        1      0      1      4
  TGFBR1 WILD-TYPE     45     58     63     39
D365V1, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        3      1      2
  TGFBR1 WILD-TYPE     48     82     75
D365V2, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED       15      2      0      0
  TGFBR1 WILD-TYPE    163    181    101     20
D365V3, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        3      1      7
  TGFBR1 WILD-TYPE     84     79     93
D365V4, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        2      6      7
  TGFBR1 WILD-TYPE     87    154    131
D365V5, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR1 MUTATED        7      7      1
  TGFBR1 WILD-TYPE    175    126     71
D365V6, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        1      7      3      6
  TGFBR1 WILD-TYPE    111     89     89    180
D365V7, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              7               89
  CLUS_3              3               89
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGFBR1 MUTATED        0      3      4      0      3      0      7
  TGFBR1 WILD-TYPE     60     47     45     40     60    125     92
D365V8, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        3      3      0      9
  TGFBR1 WILD-TYPE    127     75     68    187
D365V9, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TGFBR1 MUTATED        1      3      2      1      5      0      1      0
  TGFBR1 WILD-TYPE     39     59     26     79     64     48     42     28
                  vv
clus               CLUS_9
  TGFBR1 MUTATED        2
  TGFBR1 WILD-TYPE     72
D365V10, multiclass
        clus
vv       TGFBR1 MUTATED TGFBR1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        0      0      0      2
  TGFBR1 WILD-TYPE     33     31     27     17
D365V11, multiclass
[1] "Remove cluster labels:" "TGFBR1 MUTATED"        
clus
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6141       TCGA-A6-6142 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654       TCGA-A6-6781 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511       TCGA-AD-5900 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901       TCGA-AD-6963 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR1 MUTATED        1      0      1      0
  TGFBR1 WILD-TYPE     53     10     23     22
D365V12, multiclass
[1] "Remove cluster labels:" "TGFBR1 MUTATED"        
clus
  TGFBR1 MUTATED TGFBR1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6141       TCGA-A6-6142 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654       TCGA-A6-6781 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511       TCGA-AD-5900 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901       TCGA-AD-6963 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" "TGFBR1 WILD-TYPE" 

Clustering(366) Variable = ETAA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETAA1 MUTATED        2      0      0      4
  ETAA1 WILD-TYPE     44     58     64     39
D366V1, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ETAA1 MUTATED        2      2      2
  ETAA1 WILD-TYPE     49     81     75
D366V2, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETAA1 MUTATED       12      3      2      1
  ETAA1 WILD-TYPE    166    180     99     19
D366V3, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ETAA1 MUTATED        4      2      6
  ETAA1 WILD-TYPE     83     78     94
D366V4, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ETAA1 MUTATED        2      6      7
  ETAA1 WILD-TYPE     87    154    131
D366V5, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ETAA1 MUTATED        9      4      2
  ETAA1 WILD-TYPE    173    129     70
D366V6, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETAA1 MUTATED        2      7      4      5
  ETAA1 WILD-TYPE    110     89     88    181
D366V7, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ETAA1 MUTATED        2      2      5      1      3      1      4
  ETAA1 WILD-TYPE     58     48     44     39     60    124     95
D366V8, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETAA1 MUTATED        6      2      0     10
  ETAA1 WILD-TYPE    124     76     68    186
D366V9, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ETAA1 MUTATED        1      4      3      2      6      0      0      1
  ETAA1 WILD-TYPE     39     58     25     78     63     48     43     27
                 vv
clus              CLUS_9
  ETAA1 MUTATED        1
  ETAA1 WILD-TYPE     73
D366V10, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETAA1 MUTATED        0      1      0      2
  ETAA1 WILD-TYPE     33     30     27     17
D366V11, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETAA1 MUTATED        1      1      1      0
  ETAA1 WILD-TYPE     53      9     23     22
D366V12, multiclass
        clus
vv       ETAA1 MUTATED ETAA1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(367) Variable = DEPDC5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEPDC5 MUTATED        1      0      1      3
  DEPDC5 WILD-TYPE     45     58     63     40
D367V1, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DEPDC5 MUTATED        2      0      3
  DEPDC5 WILD-TYPE     49     83     74
D367V2, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEPDC5 MUTATED       15      5      0      4
  DEPDC5 WILD-TYPE    163    178    101     16
D367V3, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              5              178
  CLUS_3              0              101
  CLUS_4              4               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DEPDC5 MUTATED        6      2     10
  DEPDC5 WILD-TYPE     81     78     90
D367V4, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DEPDC5 MUTATED        5      8      8
  DEPDC5 WILD-TYPE     84    152    130
D367V5, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              8              152
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DEPDC5 MUTATED       10      8      3
  DEPDC5 WILD-TYPE    172    125     69
D367V6, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEPDC5 MUTATED        5      7      6      6
  DEPDC5 WILD-TYPE    107     89     86    180
D367V7, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              7               89
  CLUS_3              6               86
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEPDC5 MUTATED        5      2     10      1      0      1      5
  DEPDC5 WILD-TYPE     55     48     39     39     63    124     94
D367V8, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              2               48
  CLUS_3             10               39
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEPDC5 MUTATED       12      3      0      8
  DEPDC5 WILD-TYPE    118     75     68    188
D367V9, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1             12              118
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DEPDC5 MUTATED        3      4      3      1      7      3      2      0
  DEPDC5 WILD-TYPE     37     58     25     79     62     45     41     28
                  vv
clus               CLUS_9
  DEPDC5 MUTATED        0
  DEPDC5 WILD-TYPE     74
D367V10, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              4               58
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              3               45
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEPDC5 MUTATED        5      0      1      0
  DEPDC5 WILD-TYPE     28     31     26     19
D367V11, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEPDC5 MUTATED        5      0      1      0
  DEPDC5 WILD-TYPE     49     10     23     22
D367V12, multiclass
        clus
vv       DEPDC5 MUTATED DEPDC5 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(368) Variable = DPCR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        0      0      0      2
  DPCR1 WILD-TYPE     46     58     64     41
D368V1, multiclass
[1] "Remove cluster labels:" "DPCR1 MUTATED"         
clus
  DPCR1 MUTATED DPCR1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AY-4071 
"DPCR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        0      1      1
  DPCR1 WILD-TYPE     51     82     76
D368V2, multiclass
[1] "Remove cluster labels:" "DPCR1 MUTATED"         
clus
  DPCR1 MUTATED DPCR1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" "DPCR1 WILD-TYPE" 
     TCGA-AY-4071 
"DPCR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED       11      3      0      1
  DPCR1 WILD-TYPE    167    180    101     19
D368V3, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        7      3      3
  DPCR1 WILD-TYPE     80     77     97
D368V4, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        2      6      6
  DPCR1 WILD-TYPE     87    154    132
D368V5, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPCR1 MUTATED        6      7      1
  DPCR1 WILD-TYPE    176    126     71
D368V6, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        4      5      3      3
  DPCR1 WILD-TYPE    108     91     89    183
D368V7, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DPCR1 MUTATED        2      3      4      1      3      0      2
  DPCR1 WILD-TYPE     58     47     45     39     60    125     97
D368V8, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        7      4      0      4
  DPCR1 WILD-TYPE    123     74     68    192
D368V9, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DPCR1 MUTATED        2      5      2      2      2      0      1      0
  DPCR1 WILD-TYPE     38     57     26     78     67     48     42     28
                 vv
clus              CLUS_9
  DPCR1 MUTATED        1
  DPCR1 WILD-TYPE     73
D368V10, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        4      1      0      1
  DPCR1 WILD-TYPE     29     30     27     18
D368V11, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPCR1 MUTATED        6      0      0      0
  DPCR1 WILD-TYPE     48     10     24     22
D368V12, multiclass
        clus
vv       DPCR1 MUTATED DPCR1 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(369) Variable = NOTCH2NL MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2NL MUTATED        1      0      0      1
  NOTCH2NL WILD-TYPE     45     58     64     42
D369V1, multiclass
[1] "Remove cluster labels:" "NOTCH2NL MUTATED"      
clus
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00O 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NOTCH2NL MUTATED        1      0      1
  NOTCH2NL WILD-TYPE     50     83     76
D369V2, multiclass
[1] "Remove cluster labels:" "NOTCH2NL MUTATED"      
clus
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00O 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2NL MUTATED        4      0      2      0
  NOTCH2NL WILD-TYPE    174    183     99     20
D369V3, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                4                174
  CLUS_2                0                183
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NOTCH2NL MUTATED        2      1      1
  NOTCH2NL WILD-TYPE     85     79     99
D369V4, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NOTCH2NL MUTATED        2      1      3
  NOTCH2NL WILD-TYPE     87    159    135
D369V5, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                1                159
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NOTCH2NL MUTATED        4      2      0
  NOTCH2NL WILD-TYPE    178    131     72
D369V6, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                4                178
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2NL MUTATED        0      3      1      2
  NOTCH2NL WILD-TYPE    112     93     91    184
D369V7, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                1                 91
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH2NL MUTATED        0      1      1      1      1      0      2
  NOTCH2NL WILD-TYPE     60     49     48     39     62    125     97
D369V8, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2NL MUTATED        1      1      0      3
  NOTCH2NL WILD-TYPE    129     77     68    193
D369V9, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NOTCH2NL MUTATED        1      1      0      0      1      1      0      0
  NOTCH2NL WILD-TYPE     39     61     28     80     68     47     43     28
                    vv
clus                 CLUS_9
  NOTCH2NL MUTATED        1
  NOTCH2NL WILD-TYPE     73
D369V10, multiclass
        clus
vv       NOTCH2NL MUTATED NOTCH2NL WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2NL MUTATED        0      1      0      0
  NOTCH2NL WILD-TYPE     33     30     27     19
D369V11, multiclass
[1] "Remove cluster labels:" "NOTCH2NL MUTATED"      
clus
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6651 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-G5-6641 
"NOTCH2NL WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2NL MUTATED        1      0      0      0
  NOTCH2NL WILD-TYPE     53     10     24     22
D369V12, multiclass
[1] "Remove cluster labels:" "NOTCH2NL MUTATED"      
clus
  NOTCH2NL MUTATED NOTCH2NL WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6651 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" "NOTCH2NL WILD-TYPE" 
        TCGA-G5-6641 
"NOTCH2NL WILD-TYPE" 

Clustering(370) Variable = RNF160 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF160 MUTATED        2      1      0      2
  RNF160 WILD-TYPE     44     57     64     41
D370V1, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF160 MUTATED        3      1      1
  RNF160 WILD-TYPE     48     82     76
D370V2, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF160 MUTATED       11      1      6      0
  RNF160 WILD-TYPE    167    182     95     20
D370V3, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              1              182
  CLUS_3              6               95
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF160 MUTATED        5      3      4
  RNF160 WILD-TYPE     82     77     96
D370V4, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF160 MUTATED        0      8      6
  RNF160 WILD-TYPE     89    152    132
D370V5, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              8              152
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF160 MUTATED        8      6      0
  RNF160 WILD-TYPE    174    127     72
D370V6, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF160 MUTATED        5      3      4      6
  RNF160 WILD-TYPE    107     93     88    180
D370V7, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF160 MUTATED        4      2      2      1      3      2      4
  RNF160 WILD-TYPE     56     48     47     39     60    123     95
D370V8, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF160 MUTATED        6      4      2      4
  RNF160 WILD-TYPE    124     74     66    192
D370V9, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF160 MUTATED        1      4      2      2      2      1      1      2
  RNF160 WILD-TYPE     39     58     26     78     67     47     42     26
                  vv
clus               CLUS_9
  RNF160 MUTATED        1
  RNF160 WILD-TYPE     73
D370V10, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF160 MUTATED        0      1      2      1
  RNF160 WILD-TYPE     33     30     25     18
D370V11, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF160 MUTATED        2      0      1      1
  RNF160 WILD-TYPE     52     10     23     21
D370V12, multiclass
        clus
vv       RNF160 MUTATED RNF160 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(371) Variable = MYO3B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3B MUTATED        1      0      0      2
  MYO3B WILD-TYPE     45     58     64     41
D371V1, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3B MUTATED        2      0      1
  MYO3B WILD-TYPE     49     83     76
D371V2, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3B MUTATED       18     11      4      1
  MYO3B WILD-TYPE    160    172     97     19
D371V3, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1            18             160
  CLUS_2            11             172
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3B MUTATED       13      9      9
  MYO3B WILD-TYPE     74     71     91
D371V4, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1            13              74
  CLUS_2             9              71
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3B MUTATED        5     11     15
  MYO3B WILD-TYPE     84    149    123
D371V5, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             5              84
  CLUS_2            11             149
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3B MUTATED       15     12      4
  MYO3B WILD-TYPE    167    121     68
D371V6, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1            15             167
  CLUS_2            12             121
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3B MUTATED        9     11      9      5
  MYO3B WILD-TYPE    103     85     83    181
D371V7, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             9             103
  CLUS_2            11              85
  CLUS_3             9              83
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYO3B MUTATED        6      7      8      5      4      2      2
  MYO3B WILD-TYPE     54     43     41     35     59    123     97
D371V8, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             6              54
  CLUS_2             7              43
  CLUS_3             8              41
  CLUS_4             5              35
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3B MUTATED       16      8      3      6
  MYO3B WILD-TYPE    114     70     65    190
D371V9, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1            16             114
  CLUS_2             8              70
  CLUS_3             3              65
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYO3B MUTATED        8      6      2      3      5      2      5      1
  MYO3B WILD-TYPE     32     56     26     77     64     46     38     27
                 vv
clus              CLUS_9
  MYO3B MUTATED        1
  MYO3B WILD-TYPE     73
D371V10, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             8              32
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             5              38
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3B MUTATED        6      1      1      1
  MYO3B WILD-TYPE     27     30     26     18
D371V11, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             6              27
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3B MUTATED        7      0      1      1
  MYO3B WILD-TYPE     47     10     23     21
D371V12, multiclass
        clus
vv       MYO3B MUTATED MYO3B WILD-TYPE
  CLUS_1             7              47
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(372) Variable = TRIM23 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM23 MUTATED        3      0      0      1
  TRIM23 WILD-TYPE     43     58     64     42
D372V1, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM23 MUTATED        2      1      1
  TRIM23 WILD-TYPE     49     82     76
D372V2, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM23 MUTATED        7      3      3      0
  TRIM23 WILD-TYPE    171    180     98     20
D372V3, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM23 MUTATED        2      2      5
  TRIM23 WILD-TYPE     85     78     95
D372V4, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM23 MUTATED        0      6      4
  TRIM23 WILD-TYPE     89    154    134
D372V5, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM23 MUTATED        5      5      0
  TRIM23 WILD-TYPE    177    128     72
D372V6, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM23 MUTATED        3      4      2      4
  TRIM23 WILD-TYPE    109     92     90    182
D372V7, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM23 MUTATED        2      3      3      1      1      1      2
  TRIM23 WILD-TYPE     58     47     46     39     62    124     97
D372V8, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM23 MUTATED        6      1      2      4
  TRIM23 WILD-TYPE    124     77     66    192
D372V9, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM23 MUTATED        0      0      1      2      5      1      3      1
  TRIM23 WILD-TYPE     40     62     27     78     64     47     40     27
                  vv
clus               CLUS_9
  TRIM23 MUTATED        0
  TRIM23 WILD-TYPE     74
D372V10, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM23 MUTATED        1      0      1      1
  TRIM23 WILD-TYPE     32     31     26     18
D372V11, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM23 MUTATED        1      0      1      1
  TRIM23 WILD-TYPE     53     10     23     21
D372V12, multiclass
        clus
vv       TRIM23 MUTATED TRIM23 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(373) Variable = AGFG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG1 MUTATED        0      1      1      2
  AGFG1 WILD-TYPE     46     57     63     41
D373V1, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG1 MUTATED        1      3      0
  AGFG1 WILD-TYPE     50     80     77
D373V2, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             3              80
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG1 MUTATED        9      5      1      1
  AGFG1 WILD-TYPE    169    178    100     19
D373V3, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             5             178
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG1 MUTATED        5      2      5
  AGFG1 WILD-TYPE     82     78     95
D373V4, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG1 MUTATED        3      8      3
  AGFG1 WILD-TYPE     86    152    135
D373V5, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             8             152
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG1 MUTATED        4      8      2
  AGFG1 WILD-TYPE    178    125     70
D373V6, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             8             125
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG1 MUTATED        2      4      5      5
  AGFG1 WILD-TYPE    110     92     87    181
D373V7, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGFG1 MUTATED        0      2      6      2      1      2      3
  AGFG1 WILD-TYPE     60     48     43     38     62    123     96
D373V8, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG1 MUTATED        5      2      4      4
  AGFG1 WILD-TYPE    125     76     64    192
D373V9, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             4              64
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGFG1 MUTATED        3      2      3      0      2      0      1      1
  AGFG1 WILD-TYPE     37     60     25     80     67     48     42     27
                 vv
clus              CLUS_9
  AGFG1 MUTATED        3
  AGFG1 WILD-TYPE     71
D373V10, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG1 MUTATED        1      0      0      2
  AGFG1 WILD-TYPE     32     31     27     17
D373V11, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG1 MUTATED        2      0      1      0
  AGFG1 WILD-TYPE     52     10     23     22
D373V12, multiclass
        clus
vv       AGFG1 MUTATED AGFG1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(374) Variable = KCNS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNS3 MUTATED        1      0      1      2
  KCNS3 WILD-TYPE     45     58     63     41
D374V1, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNS3 MUTATED        1      2      1
  KCNS3 WILD-TYPE     50     81     76
D374V2, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNS3 MUTATED       12      6      3      0
  KCNS3 WILD-TYPE    166    177     98     20
D374V3, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             6             177
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNS3 MUTATED        4      3     11
  KCNS3 WILD-TYPE     83     77     89
D374V4, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNS3 MUTATED        2     11      8
  KCNS3 WILD-TYPE     87    149    130
D374V5, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            11             149
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNS3 MUTATED       10      9      2
  KCNS3 WILD-TYPE    172    124     70
D374V6, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             9             124
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNS3 MUTATED        5      7      5      4
  KCNS3 WILD-TYPE    107     89     87    182
D374V7, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             7              89
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNS3 MUTATED        5      4      5      2      0      2      3
  KCNS3 WILD-TYPE     55     46     44     38     63    123     96
D374V8, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNS3 MUTATED       11      1      3      6
  KCNS3 WILD-TYPE    119     77     65    190
D374V9, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCNS3 MUTATED        1      1      2      8      4      1      4      0
  KCNS3 WILD-TYPE     39     61     26     72     65     47     39     28
                 vv
clus              CLUS_9
  KCNS3 MUTATED        0
  KCNS3 WILD-TYPE     74
D374V10, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             8              72
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNS3 MUTATED        2      1      0      4
  KCNS3 WILD-TYPE     31     30     27     15
D374V11, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNS3 MUTATED        4      0      1      2
  KCNS3 WILD-TYPE     50     10     23     20
D374V12, multiclass
        clus
vv       KCNS3 MUTATED KCNS3 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(375) Variable = GPR112 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR112 MUTATED        6      2      4      4
  GPR112 WILD-TYPE     40     56     60     39
D375V1, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              6               40
  CLUS_2              2               56
  CLUS_3              4               60
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR112 MUTATED        8      3      5
  GPR112 WILD-TYPE     43     80     72
D375V2, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              8               43
  CLUS_2              3               80
  CLUS_3              5               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR112 MUTATED       21      7      9      1
  GPR112 WILD-TYPE    157    176     92     19
D375V3, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             21              157
  CLUS_2              7              176
  CLUS_3              9               92
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR112 MUTATED       10      5      9
  GPR112 WILD-TYPE     77     75     91
D375V4, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             10               77
  CLUS_2              5               75
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR112 MUTATED        5     15     12
  GPR112 WILD-TYPE     84    145    126
D375V5, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              5               84
  CLUS_2             15              145
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR112 MUTATED       13     11      8
  GPR112 WILD-TYPE    169    122     64
D375V6, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             13              169
  CLUS_2             11              122
  CLUS_3              8               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR112 MUTATED       11      5      7     15
  GPR112 WILD-TYPE    101     91     85    171
D375V7, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             11              101
  CLUS_2              5               91
  CLUS_3              7               85
  CLUS_4             15              171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR112 MUTATED        5      4      5      3      5      4     12
  GPR112 WILD-TYPE     55     46     44     37     58    121     87
D375V8, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              4               46
  CLUS_3              5               44
  CLUS_4              3               37
  CLUS_5              5               58
  CLUS_6              4              121
  CLUS_7             12               87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR112 MUTATED       12      7      2     16
  GPR112 WILD-TYPE    118     71     66    180
D375V9, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             12              118
  CLUS_2              7               71
  CLUS_3              2               66
  CLUS_4             16              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR112 MUTATED        4      6      4      7      8      3      1      0
  GPR112 WILD-TYPE     36     56     24     73     61     45     42     28
                  vv
clus               CLUS_9
  GPR112 MUTATED        4
  GPR112 WILD-TYPE     70
D375V10, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              6               56
  CLUS_3              4               24
  CLUS_4              7               73
  CLUS_5              8               61
  CLUS_6              3               45
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR112 MUTATED        4      2      1      4
  GPR112 WILD-TYPE     29     29     26     15
D375V11, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR112 MUTATED        7      1      2      1
  GPR112 WILD-TYPE     47      9     22     21
D375V12, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              7               47
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(376) Variable = PTPRK MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRK MUTATED        7      0      1      2
  PTPRK WILD-TYPE     39     58     63     41
D376V1, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             7              39
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRK MUTATED        9      1      0
  PTPRK WILD-TYPE     42     82     77
D376V2, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             9              42
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRK MUTATED       27      5      4      0
  PTPRK WILD-TYPE    151    178     97     20
D376V3, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1            27             151
  CLUS_2             5             178
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRK MUTATED       10      5     12
  PTPRK WILD-TYPE     77     75     88
D376V4, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1            10              77
  CLUS_2             5              75
  CLUS_3            12              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRK MUTATED        5     11     14
  PTPRK WILD-TYPE     84    149    124
D376V5, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             5              84
  CLUS_2            11             149
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRK MUTATED       18      7      5
  PTPRK WILD-TYPE    164    126     67
D376V6, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1            18             164
  CLUS_2             7             126
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRK MUTATED        6     11      8     13
  PTPRK WILD-TYPE    106     85     84    173
D376V7, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             6             106
  CLUS_2            11              85
  CLUS_3             8              84
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRK MUTATED        4      2     13      1      4      2     12
  PTPRK WILD-TYPE     56     48     36     39     59    123     87
D376V8, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3            13              36
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRK MUTATED       15      6      1     15
  PTPRK WILD-TYPE    115     72     67    181
D376V9, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1            15             115
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4            15             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRK MUTATED        6      6      2      4     14      2      1      1
  PTPRK WILD-TYPE     34     56     26     76     55     46     42     27
                 vv
clus              CLUS_9
  PTPRK MUTATED        1
  PTPRK WILD-TYPE     73
D376V10, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             6              34
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5            14              55
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRK MUTATED        5      1      1      1
  PTPRK WILD-TYPE     28     30     26     18
D376V11, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             5              28
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRK MUTATED        2      0      2      4
  PTPRK WILD-TYPE     52     10     22     18
D376V12, multiclass
        clus
vv       PTPRK MUTATED PTPRK WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             4              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(377) Variable = DCAF6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF6 MUTATED        4      0      0      3
  DCAF6 WILD-TYPE     42     58     64     40
D377V1, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCAF6 MUTATED        4      2      1
  DCAF6 WILD-TYPE     47     81     76
D377V2, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF6 MUTATED       12      4      1      0
  DCAF6 WILD-TYPE    166    179    100     20
D377V3, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCAF6 MUTATED        2      2      7
  DCAF6 WILD-TYPE     85     78     93
D377V4, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCAF6 MUTATED        0      6      8
  DCAF6 WILD-TYPE     89    154    130
D377V5, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCAF6 MUTATED        9      5      0
  DCAF6 WILD-TYPE    173    128     72
D377V6, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF6 MUTATED        2      4      5      7
  DCAF6 WILD-TYPE    110     92     87    179
D377V7, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCAF6 MUTATED        2      0      7      2      1      1      5
  DCAF6 WILD-TYPE     58     50     42     38     62    124     94
D377V8, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             7              42
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF6 MUTATED        7      3      1      6
  DCAF6 WILD-TYPE    123     75     67    190
D377V9, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCAF6 MUTATED        2      4      1      1      7      0      2      0
  DCAF6 WILD-TYPE     38     58     27     79     62     48     41     28
                 vv
clus              CLUS_9
  DCAF6 MUTATED        0
  DCAF6 WILD-TYPE     74
D377V10, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF6 MUTATED        1      1      0      2
  DCAF6 WILD-TYPE     32     30     27     17
D377V11, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF6 MUTATED        3      0      1      0
  DCAF6 WILD-TYPE     51     10     23     22
D377V12, multiclass
        clus
vv       DCAF6 MUTATED DCAF6 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(378) Variable = CCDC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC18 MUTATED        2      0      0      2
  CCDC18 WILD-TYPE     44     58     64     41
D378V1, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC18 MUTATED        1      2      1
  CCDC18 WILD-TYPE     50     81     76
D378V2, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC18 MUTATED        7      3      3      0
  CCDC18 WILD-TYPE    171    180     98     20
D378V3, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC18 MUTATED        4      3      2
  CCDC18 WILD-TYPE     83     77     98
D378V4, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC18 MUTATED        0      5      4
  CCDC18 WILD-TYPE     89    155    134
D378V5, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC18 MUTATED        4      5      0
  CCDC18 WILD-TYPE    178    128     72
D378V6, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC18 MUTATED        4      1      4      4
  CCDC18 WILD-TYPE    108     95     88    182
D378V7, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               95
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC18 MUTATED        5      1      1      0      3      1      2
  CCDC18 WILD-TYPE     55     49     48     40     60    124     97
D378V8, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC18 MUTATED        4      4      1      4
  CCDC18 WILD-TYPE    126     74     67    192
D378V9, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC18 MUTATED        0      3      2      1      3      2      2      0
  CCDC18 WILD-TYPE     40     59     26     79     66     46     41     28
                  vv
clus               CLUS_9
  CCDC18 MUTATED        0
  CCDC18 WILD-TYPE     74
D378V10, multiclass
        clus
vv       CCDC18 MUTATED CCDC18 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC18 MUTATED        1      1      0      0
  CCDC18 WILD-TYPE     32     30     27     19
D378V11, multiclass
[1] "Remove cluster labels:" "CCDC18 MUTATED"        
clus
  CCDC18 MUTATED CCDC18 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC18 MUTATED        1      1      0      0
  CCDC18 WILD-TYPE     53      9     24     22
D378V12, multiclass
[1] "Remove cluster labels:" "CCDC18 MUTATED"        
clus
  CCDC18 MUTATED CCDC18 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" "CCDC18 WILD-TYPE" 

Clustering(379) Variable = RAB28 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB28 MUTATED        0      0      0      1
  RAB28 WILD-TYPE     46     58     64     42
D379V1, multiclass
[1] "Remove cluster labels:" "RAB28 MUTATED"         
clus
  RAB28 MUTATED RAB28 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB28 MUTATED        0      0      1
  RAB28 WILD-TYPE     51     83     76
D379V2, multiclass
[1] "Remove cluster labels:" "RAB28 MUTATED"         
clus
  RAB28 MUTATED RAB28 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB28 MUTATED        6      0      1      0
  RAB28 WILD-TYPE    172    183    100     20
D379V3, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB28 MUTATED        1      0      5
  RAB28 WILD-TYPE     86     80     95
D379V4, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB28 MUTATED        0      4      3
  RAB28 WILD-TYPE     89    156    135
D379V5, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB28 MUTATED        4      3      0
  RAB28 WILD-TYPE    178    130     72
D379V6, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB28 MUTATED        1      4      1      1
  RAB28 WILD-TYPE    111     92     91    185
D379V7, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB28 MUTATED        2      1      4      0      0      0      0
  RAB28 WILD-TYPE     58     49     45     40     63    125     99
D379V8, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB28 MUTATED        5      0      0      2
  RAB28 WILD-TYPE    125     78     68    194
D379V9, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB28 MUTATED        2      1      0      0      3      1      0      0
  RAB28 WILD-TYPE     38     61     28     80     66     47     43     28
                 vv
clus              CLUS_9
  RAB28 MUTATED        0
  RAB28 WILD-TYPE     74
D379V10, multiclass
        clus
vv       RAB28 MUTATED RAB28 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB28 MUTATED        0      0      0      1
  RAB28 WILD-TYPE     33     31     27     18
D379V11, multiclass
[1] "Remove cluster labels:" "RAB28 MUTATED"         
clus
  RAB28 MUTATED RAB28 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-G5-6641 
"RAB28 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB28 MUTATED        0      0      1      0
  RAB28 WILD-TYPE     54     10     23     22
D379V12, multiclass
[1] "Remove cluster labels:" "RAB28 MUTATED"         
clus
  RAB28 MUTATED RAB28 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" "RAB28 WILD-TYPE" 
     TCGA-G5-6641 
"RAB28 WILD-TYPE" 

Clustering(380) Variable = ARHGEF10 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF10 MUTATED        5      0      0      3
  ARHGEF10 WILD-TYPE     41     58     64     40
D380V1, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF10 MUTATED        7      0      1
  ARHGEF10 WILD-TYPE     44     83     76
D380V2, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                7                 44
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF10 MUTATED       19      3      2      0
  ARHGEF10 WILD-TYPE    159    180     99     20
D380V3, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1               19                159
  CLUS_2                3                180
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF10 MUTATED        8      1      6
  ARHGEF10 WILD-TYPE     79     79     94
D380V4, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                1                 79
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF10 MUTATED        4      4     13
  ARHGEF10 WILD-TYPE     85    156    125
D380V5, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2                4                156
  CLUS_3               13                125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF10 MUTATED        9      7      5
  ARHGEF10 WILD-TYPE    173    126     67
D380V6, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                9                173
  CLUS_2                7                126
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF10 MUTATED        1      7      8      8
  ARHGEF10 WILD-TYPE    111     89     84    178
D380V7, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                7                 89
  CLUS_3                8                 84
  CLUS_4                8                178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF10 MUTATED        2      6      6      1      2      0      7
  ARHGEF10 WILD-TYPE     58     44     43     39     61    125     92
D380V8, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                6                 44
  CLUS_3                6                 43
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                7                 92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF10 MUTATED        8      5      0     11
  ARHGEF10 WILD-TYPE    122     73     68    185
D380V9, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                8                122
  CLUS_2                5                 73
  CLUS_3                0                 68
  CLUS_4               11                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGEF10 MUTATED        3      6      2      2      8      0      0      2
  ARHGEF10 WILD-TYPE     37     56     26     78     61     48     43     26
                    vv
clus                 CLUS_9
  ARHGEF10 MUTATED        1
  ARHGEF10 WILD-TYPE     73
D380V10, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                6                 56
  CLUS_3                2                 26
  CLUS_4                2                 78
  CLUS_5                8                 61
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                2                 26
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF10 MUTATED        2      0      0      3
  ARHGEF10 WILD-TYPE     31     31     27     16
D380V11, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF10 MUTATED        5      0      0      0
  ARHGEF10 WILD-TYPE     49     10     24     22
D380V12, multiclass
        clus
vv       ARHGEF10 MUTATED ARHGEF10 WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(381) Variable = HEPACAM2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        3      0      0      1
  HEPACAM2 WILD-TYPE     43     58     64     42
D381V1, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        3      0      1
  HEPACAM2 WILD-TYPE     48     83     76
D381V2, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED       10      1      2      1
  HEPACAM2 WILD-TYPE    168    182     99     19
D381V3, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1               10                168
  CLUS_2                1                182
  CLUS_3                2                 99
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        7      1      3
  HEPACAM2 WILD-TYPE     80     79     97
D381V4, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        1      3      8
  HEPACAM2 WILD-TYPE     88    157    130
D381V5, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                8                130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        8      2      2
  HEPACAM2 WILD-TYPE    174    131     70
D381V6, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                8                174
  CLUS_2                2                131
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        1      3      6      4
  HEPACAM2 WILD-TYPE    111     93     86    182
D381V7, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                3                 93
  CLUS_3                6                 86
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HEPACAM2 MUTATED        1      0      7      2      1      0      3
  HEPACAM2 WILD-TYPE     59     50     42     38     62    125     96
D381V8, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                7                 42
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        7      3      0      4
  HEPACAM2 WILD-TYPE    123     75     68    192
D381V9, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                3                 75
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HEPACAM2 MUTATED        0      4      0      2      5      1      2      0
  HEPACAM2 WILD-TYPE     40     58     28     78     64     47     41     28
                    vv
clus                 CLUS_9
  HEPACAM2 MUTATED        0
  HEPACAM2 WILD-TYPE     74
D381V10, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 58
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                5                 64
  CLUS_6                1                 47
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        1      1      0      2
  HEPACAM2 WILD-TYPE     32     30     27     17
D381V11, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        4      0      0      0
  HEPACAM2 WILD-TYPE     50     10     24     22
D381V12, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(382) Variable = KCNH7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH7 MUTATED        6      0      1      5
  KCNH7 WILD-TYPE     40     58     63     38
D382V1, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH7 MUTATED        8      2      2
  KCNH7 WILD-TYPE     43     81     75
D382V2, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH7 MUTATED       21      8      8      1
  KCNH7 WILD-TYPE    157    175     93     19
D382V3, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             8             175
  CLUS_3             8              93
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH7 MUTATED       14      6      5
  KCNH7 WILD-TYPE     73     74     95
D382V4, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1            14              73
  CLUS_2             6              74
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH7 MUTATED        3      7     20
  KCNH7 WILD-TYPE     86    153    118
D382V5, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3            20             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH7 MUTATED       20      7      3
  KCNH7 WILD-TYPE    162    126     69
D382V6, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1            20             162
  CLUS_2             7             126
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH7 MUTATED        8      5     12     13
  KCNH7 WILD-TYPE    104     91     80    173
D382V7, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             5              91
  CLUS_3            12              80
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNH7 MUTATED        6      2      8      2      7      2     11
  KCNH7 WILD-TYPE     54     48     41     38     56    123     88
D382V8, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             2              48
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             7              56
  CLUS_6             2             123
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH7 MUTATED       12      8      6     11
  KCNH7 WILD-TYPE    118     70     62    185
D382V9, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             8              70
  CLUS_3             6              62
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCNH7 MUTATED        5     10      0      4      9      1      4      0
  KCNH7 WILD-TYPE     35     52     28     76     60     47     39     28
                 vv
clus              CLUS_9
  KCNH7 MUTATED        4
  KCNH7 WILD-TYPE     70
D382V10, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             5              35
  CLUS_2            10              52
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             9              60
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH7 MUTATED        2      5      1      3
  KCNH7 WILD-TYPE     31     26     26     16
D382V11, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             5              26
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH7 MUTATED        9      0      1      1
  KCNH7 WILD-TYPE     45     10     23     21
D382V12, multiclass
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  CLUS_1             9              45
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(383) Variable = AGBL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL2 MUTATED        1      0      0      4
  AGBL2 WILD-TYPE     45     58     64     39
D383V1, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL2 MUTATED        1      2      2
  AGBL2 WILD-TYPE     50     81     75
D383V2, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL2 MUTATED       11      2      2      0
  AGBL2 WILD-TYPE    167    181     99     20
D383V3, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL2 MUTATED        2      1      7
  AGBL2 WILD-TYPE     85     79     93
D383V4, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL2 MUTATED        1      6      3
  AGBL2 WILD-TYPE     88    154    135
D383V5, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL2 MUTATED        4      6      0
  AGBL2 WILD-TYPE    178    127     72
D383V6, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL2 MUTATED        1      6      3      5
  AGBL2 WILD-TYPE    111     90     89    181
D383V7, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGBL2 MUTATED        2      3      5      1      0      2      2
  AGBL2 WILD-TYPE     58     47     44     39     63    123     97
D383V8, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL2 MUTATED        8      0      0      5
  AGBL2 WILD-TYPE    122     78     68    191
D383V9, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGBL2 MUTATED        2      2      1      3      3      1      0      0
  AGBL2 WILD-TYPE     38     60     27     77     66     47     43     28
                 vv
clus              CLUS_9
  AGBL2 MUTATED        1
  AGBL2 WILD-TYPE     73
D383V10, multiclass
        clus
vv       AGBL2 MUTATED AGBL2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL2 MUTATED        0      0      0      1
  AGBL2 WILD-TYPE     33     31     27     18
D383V11, multiclass
[1] "Remove cluster labels:" "AGBL2 MUTATED"         
clus
  AGBL2 MUTATED AGBL2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-G5-6641 
"AGBL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL2 MUTATED        1      0      0      0
  AGBL2 WILD-TYPE     53     10     24     22
D383V12, multiclass
[1] "Remove cluster labels:" "AGBL2 MUTATED"         
clus
  AGBL2 MUTATED AGBL2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" "AGBL2 WILD-TYPE" 
     TCGA-G5-6641 
"AGBL2 WILD-TYPE" 

Clustering(384) Variable = ACP6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP6 MUTATED        0      0      0      0
  ACP6 WILD-TYPE     46     58     64     43
D384V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP6 MUTATED        0      0      0
  ACP6 WILD-TYPE     51     83     77
D384V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP6 MUTATED        3      1      2      0
  ACP6 WILD-TYPE    175    182     99     20
D384V3, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP6 MUTATED        3      1      2
  ACP6 WILD-TYPE     84     79     98
D384V4, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP6 MUTATED        1      1      2
  ACP6 WILD-TYPE     88    159    136
D384V5, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP6 MUTATED        2      0      2
  ACP6 WILD-TYPE    180    133     70
D384V6, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP6 MUTATED        2      2      2      0
  ACP6 WILD-TYPE    110     94     90    186
D384V7, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACP6 MUTATED        1      0      2      2      1      0      0
  ACP6 WILD-TYPE     59     50     47     38     62    125     99
D384V8, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP6 MUTATED        3      2      0      1
  ACP6 WILD-TYPE    127     76     68    195
D384V9, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ACP6 MUTATED        1      0      0      2      1      1      1      0      0
  ACP6 WILD-TYPE     39     62     28     78     68     47     42     28     74
D384V10, multiclass
        clus
vv       ACP6 MUTATED ACP6 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP6 MUTATED        1      1      0      0
  ACP6 WILD-TYPE     32     30     27     19
D384V11, multiclass
[1] "Remove cluster labels:" "ACP6 MUTATED"          
clus
  ACP6 MUTATED ACP6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP6 MUTATED        1      0      0      1
  ACP6 WILD-TYPE     53     10     24     21
D384V12, multiclass
[1] "Remove cluster labels:" "ACP6 MUTATED"          
clus
  ACP6 MUTATED ACP6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" "ACP6 WILD-TYPE" 

Clustering(385) Variable = UBC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        0      0      0      0
  UBC WILD-TYPE     46     58     64     43
D385V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        0      0      0
  UBC WILD-TYPE     51     83     77
D385V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        1      3      1      0
  UBC WILD-TYPE    177    180    100     20
D385V3, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1           177
  CLUS_2           3           180
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        3      2      0
  UBC WILD-TYPE     84     78    100
D385V4, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           3            84
  CLUS_2           2            78
  CLUS_3           0           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        0      2      3
  UBC WILD-TYPE     89    158    135
D385V5, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           0            89
  CLUS_2           2           158
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        4      1      0
  UBC WILD-TYPE    178    132     72
D385V6, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           4           178
  CLUS_2           1           132
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        2      0      3      0
  UBC WILD-TYPE    110     96     89    186
D385V7, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           2           110
  CLUS_2           0            96
  CLUS_3           3            89
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBC MUTATED        1      1      0      1      2      0      0
  UBC WILD-TYPE     59     49     49     39     61    125     99
D385V8, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1            59
  CLUS_2           1            49
  CLUS_3           0            49
  CLUS_4           1            39
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        3      2      0      0
  UBC WILD-TYPE    127     76     68    196
D385V9, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           3           127
  CLUS_2           2            76
  CLUS_3           0            68
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UBC MUTATED        1      2      0      0      0      1      1      0      0
  UBC WILD-TYPE     39     60     28     80     69     47     42     28     74
D385V10, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           0            69
  CLUS_6           1            47
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        0      1      0      0
  UBC WILD-TYPE     33     30     27     19
D385V11, multiclass
[1] "Remove cluster labels:" "UBC MUTATED"           
clus
  UBC MUTATED UBC WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DM-A0XD    TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-EI-6506    TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-F4-6570    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-F4-6809    TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-F5-6811    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        0      1      0      0
  UBC WILD-TYPE     54      9     24     22
D385V12, multiclass
[1] "Remove cluster labels:" "UBC MUTATED"           
clus
  UBC MUTATED UBC WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DM-A0XD    TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-EI-6506    TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-F4-6570    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-F4-6809    TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-F5-6811    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" "UBC WILD-TYPE" 

Clustering(386) Variable = BRCA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED        2      1      2      5
  BRCA2 WILD-TYPE     44     57     62     38
D386V1, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED        4      3      3
  BRCA2 WILD-TYPE     47     80     74
D386V2, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED       33     16      9      0
  BRCA2 WILD-TYPE    145    167     92     20
D386V3, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            33             145
  CLUS_2            16             167
  CLUS_3             9              92
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED       20     11     16
  BRCA2 WILD-TYPE     67     69     84
D386V4, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            20              67
  CLUS_2            11              69
  CLUS_3            16              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED        6     19     23
  BRCA2 WILD-TYPE     83    141    115
D386V5, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             6              83
  CLUS_2            19             141
  CLUS_3            23             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED       25     16      7
  BRCA2 WILD-TYPE    157    117     65
D386V6, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            25             157
  CLUS_2            16             117
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED       14     13     19     12
  BRCA2 WILD-TYPE     98     83     73    174
D386V7, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            14              98
  CLUS_2            13              83
  CLUS_3            19              73
  CLUS_4            12             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRCA2 MUTATED       11      9     15      5      7      4      7
  BRCA2 WILD-TYPE     49     41     34     35     56    121     92
D386V8, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            11              49
  CLUS_2             9              41
  CLUS_3            15              34
  CLUS_4             5              35
  CLUS_5             7              56
  CLUS_6             4             121
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED       27     11      5     14
  BRCA2 WILD-TYPE    103     67     63    182
D386V9, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            27             103
  CLUS_2            11              67
  CLUS_3             5              63
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BRCA2 MUTATED        5     12      6     14     10      3      5      0
  BRCA2 WILD-TYPE     35     50     22     66     59     45     38     28
                 vv
clus              CLUS_9
  BRCA2 MUTATED        2
  BRCA2 WILD-TYPE     72
D386V10, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             5              35
  CLUS_2            12              50
  CLUS_3             6              22
  CLUS_4            14              66
  CLUS_5            10              59
  CLUS_6             3              45
  CLUS_7             5              38
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED        5      2      3      6
  BRCA2 WILD-TYPE     28     29     24     13
D386V11, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             2              29
  CLUS_3             3              24
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED        9      0      5      2
  BRCA2 WILD-TYPE     45     10     19     20
D386V12, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             9              45
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(387) Variable = EZH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        3      0      0      2
  EZH2 WILD-TYPE     43     58     64     41
D387V1, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        4      1      0
  EZH2 WILD-TYPE     47     82     77
D387V2, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED       27     10      8      1
  EZH2 WILD-TYPE    151    173     93     19
D387V3, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1           27            151
  CLUS_2           10            173
  CLUS_3            8             93
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED       13     10     19
  EZH2 WILD-TYPE     74     70     81
D387V4, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1           13             74
  CLUS_2           10             70
  CLUS_3           19             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        4     18     21
  EZH2 WILD-TYPE     85    142    117
D387V5, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            4             85
  CLUS_2           18            142
  CLUS_3           21            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED       22     17      4
  EZH2 WILD-TYPE    160    116     68
D387V6, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1           22            160
  CLUS_2           17            116
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED       13     18      9      6
  EZH2 WILD-TYPE     99     78     83    180
D387V7, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1           13             99
  CLUS_2           18             78
  CLUS_3            9             83
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EZH2 MUTATED        9     11     14      3      3      0      6
  EZH2 WILD-TYPE     51     39     35     37     60    125     93
D387V8, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            9             51
  CLUS_2           11             39
  CLUS_3           14             35
  CLUS_4            3             37
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED       24      6      7      8
  EZH2 WILD-TYPE    106     72     61    188
D387V9, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1           24            106
  CLUS_2            6             72
  CLUS_3            7             61
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EZH2 MUTATED       11      5      5      7      7      0      8      1      1
  EZH2 WILD-TYPE     29     57     23     73     62     48     35     27     73
D387V10, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1           11             29
  CLUS_2            5             57
  CLUS_3            5             23
  CLUS_4            7             73
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            8             35
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        5      1      4      4
  EZH2 WILD-TYPE     28     30     23     15
D387V11, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            1             30
  CLUS_3            4             23
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        7      1      6      0
  EZH2 WILD-TYPE     47      9     18     22
D387V12, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            7             47
  CLUS_2            1              9
  CLUS_3            6             18
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(388) Variable = OR5B2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5B2 MUTATED        1      0      0      1
  OR5B2 WILD-TYPE     45     58     64     42
D388V1, multiclass
[1] "Remove cluster labels:" "OR5B2 MUTATED"         
clus
  OR5B2 MUTATED OR5B2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AY-4071 
"OR5B2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5B2 MUTATED        1      1      0
  OR5B2 WILD-TYPE     50     82     77
D388V2, multiclass
[1] "Remove cluster labels:" "OR5B2 MUTATED"         
clus
  OR5B2 MUTATED OR5B2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" "OR5B2 WILD-TYPE" 
     TCGA-AY-4071 
"OR5B2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5B2 MUTATED        7      4      3      1
  OR5B2 WILD-TYPE    171    179     98     19
D388V3, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5B2 MUTATED        6      5      2
  OR5B2 WILD-TYPE     81     75     98
D388V4, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             5              75
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5B2 MUTATED        2      8      4
  OR5B2 WILD-TYPE     87    152    134
D388V5, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5B2 MUTATED        5      8      1
  OR5B2 WILD-TYPE    177    125     71
D388V6, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             8             125
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5B2 MUTATED        5      4      3      3
  OR5B2 WILD-TYPE    107     92     89    183
D388V7, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5B2 MUTATED        2      4      2      1      3      0      3
  OR5B2 WILD-TYPE     58     46     47     39     60    125     96
D388V8, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5B2 MUTATED        4      3      4      4
  OR5B2 WILD-TYPE    126     75     64    192
D388V9, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             4              64
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5B2 MUTATED        3      3      3      0      1      1      2      0
  OR5B2 WILD-TYPE     37     59     25     80     68     47     41     28
                 vv
clus              CLUS_9
  OR5B2 MUTATED        2
  OR5B2 WILD-TYPE     72
D388V10, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5B2 MUTATED        3      1      2      0
  OR5B2 WILD-TYPE     30     30     25     19
D388V11, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5B2 MUTATED        2      2      1      1
  OR5B2 WILD-TYPE     52      8     23     21
D388V12, multiclass
        clus
vv       OR5B2 MUTATED OR5B2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(389) Variable = GABRA6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA6 MUTATED        1      1      0      3
  GABRA6 WILD-TYPE     45     57     64     40
D389V1, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA6 MUTATED        2      2      1
  GABRA6 WILD-TYPE     49     81     76
D389V2, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA6 MUTATED       13      4      4      0
  GABRA6 WILD-TYPE    165    179     97     20
D389V3, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              4              179
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA6 MUTATED        8      2      6
  GABRA6 WILD-TYPE     79     78     94
D389V4, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA6 MUTATED        4      6      9
  GABRA6 WILD-TYPE     85    154    129
D389V5, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              6              154
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA6 MUTATED        8      7      4
  GABRA6 WILD-TYPE    174    126     68
D389V6, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              7              126
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA6 MUTATED        3      8      5      5
  GABRA6 WILD-TYPE    109     88     87    181
D389V7, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABRA6 MUTATED        1      4      5      1      4      1      5
  GABRA6 WILD-TYPE     59     46     44     39     59    124     94
D389V8, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA6 MUTATED        8      5      0      8
  GABRA6 WILD-TYPE    122     73     68    188
D389V9, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GABRA6 MUTATED        2      5      3      3      6      0      1      0
  GABRA6 WILD-TYPE     38     57     25     77     63     48     42     28
                  vv
clus               CLUS_9
  GABRA6 MUTATED        1
  GABRA6 WILD-TYPE     73
D389V10, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA6 MUTATED        1      1      0      0
  GABRA6 WILD-TYPE     32     30     27     19
D389V11, multiclass
[1] "Remove cluster labels:" "GABRA6 MUTATED"        
clus
  GABRA6 MUTATED GABRA6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A28F 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6465 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA6 MUTATED        2      0      0      0
  GABRA6 WILD-TYPE     52     10     24     22
D389V12, multiclass
[1] "Remove cluster labels:" "GABRA6 MUTATED"        
clus
  GABRA6 MUTATED GABRA6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A28F 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6465 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 

Clustering(390) Variable = LYST MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYST MUTATED        9      1      0      6
  LYST WILD-TYPE     37     57     64     37
D390V1, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            9             37
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYST MUTATED       11      3      2
  LYST WILD-TYPE     40     80     75
D390V2, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1           11             40
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYST MUTATED       30      6      4      0
  LYST WILD-TYPE    148    177     97     20
D390V3, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1           30            148
  CLUS_2            6            177
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYST MUTATED       10      6      8
  LYST WILD-TYPE     77     74     92
D390V4, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1           10             77
  CLUS_2            6             74
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYST MUTATED        6     11     14
  LYST WILD-TYPE     83    149    124
D390V5, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            6             83
  CLUS_2           11            149
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYST MUTATED       18      9      4
  LYST WILD-TYPE    164    124     68
D390V6, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1           18            164
  CLUS_2            9            124
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYST MUTATED        7     10      9     14
  LYST WILD-TYPE    105     86     83    172
D390V7, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            7            105
  CLUS_2           10             86
  CLUS_3            9             83
  CLUS_4           14            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LYST MUTATED        5      3     12      0      5      3     12
  LYST WILD-TYPE     55     47     37     40     58    122     87
D390V8, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            5             55
  CLUS_2            3             47
  CLUS_3           12             37
  CLUS_4            0             40
  CLUS_5            5             58
  CLUS_6            3            122
  CLUS_7           12             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYST MUTATED        9     12      3     13
  LYST WILD-TYPE    121     66     65    183
D390V9, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            9            121
  CLUS_2           12             66
  CLUS_3            3             65
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LYST MUTATED        2      8      2      5     13      0      5      1      1
  LYST WILD-TYPE     38     54     26     75     56     48     38     27     73
D390V10, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            2             38
  CLUS_2            8             54
  CLUS_3            2             26
  CLUS_4            5             75
  CLUS_5           13             56
  CLUS_6            0             48
  CLUS_7            5             38
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYST MUTATED        3      3      1      1
  LYST WILD-TYPE     30     28     26     18
D390V11, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            3             30
  CLUS_2            3             28
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYST MUTATED        6      0      2      0
  LYST WILD-TYPE     48     10     22     22
D390V12, multiclass
        clus
vv       LYST MUTATED LYST WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(391) Variable = PPP2R1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R1A MUTATED        1      0      1      0
  PPP2R1A WILD-TYPE     45     58     63     43
D391V1, multiclass
[1] "Remove cluster labels:" "PPP2R1A MUTATED"       
clus
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3516        TCGA-AA-3517 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AY-4071 
"PPP2R1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R1A MUTATED        1      1      0
  PPP2R1A WILD-TYPE     50     82     77
D391V2, multiclass
[1] "Remove cluster labels:" "PPP2R1A MUTATED"       
clus
  PPP2R1A MUTATED PPP2R1A WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3516        TCGA-AA-3517 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" "PPP2R1A WILD-TYPE" 
       TCGA-AY-4071 
"PPP2R1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R1A MUTATED        9      2      3      0
  PPP2R1A WILD-TYPE    169    181     98     20
D391V3, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               9               169
  CLUS_2               2               181
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R1A MUTATED        2      1      7
  PPP2R1A WILD-TYPE     85     79     93
D391V4, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R1A MUTATED        1      3      7
  PPP2R1A WILD-TYPE     88    157    131
D391V5, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R1A MUTATED        7      3      1
  PPP2R1A WILD-TYPE    175    130     71
D391V6, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               7               175
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R1A MUTATED        1      5      4      4
  PPP2R1A WILD-TYPE    111     91     88    182
D391V7, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP2R1A MUTATED        0      2      8      0      0      2      2
  PPP2R1A WILD-TYPE     60     48     41     40     63    123     97
D391V8, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               8                41
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               2               123
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R1A MUTATED        5      3      1      5
  PPP2R1A WILD-TYPE    125     75     67    191
D391V9, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               5               125
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPP2R1A MUTATED        0      3      1      1      6      0      1      0
  PPP2R1A WILD-TYPE     40     59     27     79     63     48     42     28
                   vv
clus                CLUS_9
  PPP2R1A MUTATED        2
  PPP2R1A WILD-TYPE     72
D391V10, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R1A MUTATED        0      0      0      3
  PPP2R1A WILD-TYPE     33     31     27     16
D391V11, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R1A MUTATED        2      0      1      0
  PPP2R1A WILD-TYPE     52     10     23     22
D391V12, multiclass
        clus
vv       PPP2R1A MUTATED PPP2R1A WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(392) Variable = NUP54 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        0      0      0      2
  NUP54 WILD-TYPE     46     58     64     41
D392V1, multiclass
[1] "Remove cluster labels:" "NUP54 MUTATED"         
clus
  NUP54 MUTATED NUP54 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AY-4071 
"NUP54 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        0      1      1
  NUP54 WILD-TYPE     51     82     76
D392V2, multiclass
[1] "Remove cluster labels:" "NUP54 MUTATED"         
clus
  NUP54 MUTATED NUP54 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" "NUP54 WILD-TYPE" 
     TCGA-AY-4071 
"NUP54 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        7      2      0      1
  NUP54 WILD-TYPE    171    181    101     19
D392V3, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        5      0      3
  NUP54 WILD-TYPE     82     80     97
D392V4, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        1      5      4
  NUP54 WILD-TYPE     88    155    134
D392V5, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP54 MUTATED        3      6      1
  NUP54 WILD-TYPE    179    127     71
D392V6, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        2      4      1      3
  NUP54 WILD-TYPE    110     92     91    183
D392V7, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP54 MUTATED        3      2      1      2      0      0      2
  NUP54 WILD-TYPE     57     48     48     38     63    125     97
D392V8, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        3      1      2      4
  NUP54 WILD-TYPE    127     77     66    192
D392V9, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP54 MUTATED        2      0      2      0      2      0      3      0
  NUP54 WILD-TYPE     38     62     26     80     67     48     40     28
                 vv
clus              CLUS_9
  NUP54 MUTATED        1
  NUP54 WILD-TYPE     73
D392V10, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        2      1      0      1
  NUP54 WILD-TYPE     31     30     27     18
D392V11, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP54 MUTATED        3      0      1      0
  NUP54 WILD-TYPE     51     10     23     22
D392V12, multiclass
        clus
vv       NUP54 MUTATED NUP54 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(393) Variable = OR11G2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11G2 MUTATED        0      0      0      2
  OR11G2 WILD-TYPE     46     58     64     41
D393V1, multiclass
[1] "Remove cluster labels:" "OR11G2 MUTATED"        
clus
  OR11G2 MUTATED OR11G2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AY-4071 
"OR11G2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR11G2 MUTATED        1      0      1
  OR11G2 WILD-TYPE     50     83     76
D393V2, multiclass
[1] "Remove cluster labels:" "OR11G2 MUTATED"        
clus
  OR11G2 MUTATED OR11G2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AY-4071 
"OR11G2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11G2 MUTATED        3      2      1      0
  OR11G2 WILD-TYPE    175    181    100     20
D393V3, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR11G2 MUTATED        1      3      0
  OR11G2 WILD-TYPE     86     77    100
D393V4, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              3               77
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR11G2 MUTATED        1      3      2
  OR11G2 WILD-TYPE     88    157    136
D393V5, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR11G2 MUTATED        2      3      1
  OR11G2 WILD-TYPE    180    130     71
D393V6, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11G2 MUTATED        3      0      1      2
  OR11G2 WILD-TYPE    109     96     91    184
D393V7, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR11G2 MUTATED        3      0      0      0      2      0      1
  OR11G2 WILD-TYPE     57     50     49     40     61    125     98
D393V8, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11G2 MUTATED        2      1      1      1
  OR11G2 WILD-TYPE    128     77     67    195
D393V9, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR11G2 MUTATED        1      0      0      2      1      0      1      0
  OR11G2 WILD-TYPE     39     62     28     78     68     48     42     28
                  vv
clus               CLUS_9
  OR11G2 MUTATED        0
  OR11G2 WILD-TYPE     74
D393V10, multiclass
        clus
vv       OR11G2 MUTATED OR11G2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11G2 MUTATED        0      1      0      0
  OR11G2 WILD-TYPE     33     30     27     19
D393V11, multiclass
[1] "Remove cluster labels:" "OR11G2 MUTATED"        
clus
  OR11G2 MUTATED OR11G2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3511 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-G5-6641 
"OR11G2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11G2 MUTATED        1      0      0      0
  OR11G2 WILD-TYPE     53     10     24     22
D393V12, multiclass
[1] "Remove cluster labels:" "OR11G2 MUTATED"        
clus
  OR11G2 MUTATED OR11G2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3511 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" "OR11G2 WILD-TYPE" 
      TCGA-G5-6641 
"OR11G2 WILD-TYPE" 

Clustering(394) Variable = FUBP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP3 MUTATED        1      0      0      1
  FUBP3 WILD-TYPE     45     58     64     42
D394V1, multiclass
[1] "Remove cluster labels:" "FUBP3 MUTATED"         
clus
  FUBP3 MUTATED FUBP3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AY-4071 
"FUBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP3 MUTATED        1      1      0
  FUBP3 WILD-TYPE     50     82     77
D394V2, multiclass
[1] "Remove cluster labels:" "FUBP3 MUTATED"         
clus
  FUBP3 MUTATED FUBP3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AY-4071 
"FUBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP3 MUTATED        9      0      0      0
  FUBP3 WILD-TYPE    169    183    101     20
D394V3, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP3 MUTATED        3      0      4
  FUBP3 WILD-TYPE     84     80     96
D394V4, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP3 MUTATED        1      1      5
  FUBP3 WILD-TYPE     88    159    133
D394V5, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUBP3 MUTATED        5      2      0
  FUBP3 WILD-TYPE    177    131     72
D394V6, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP3 MUTATED        0      3      4      2
  FUBP3 WILD-TYPE    112     93     88    184
D394V7, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FUBP3 MUTATED        0      2      5      0      0      0      2
  FUBP3 WILD-TYPE     60     48     44     40     63    125     97
D394V8, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP3 MUTATED        5      1      0      3
  FUBP3 WILD-TYPE    125     77     68    193
D394V9, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FUBP3 MUTATED        0      4      1      0      3      0      0      0
  FUBP3 WILD-TYPE     40     58     27     80     66     48     43     28
                 vv
clus              CLUS_9
  FUBP3 MUTATED        1
  FUBP3 WILD-TYPE     73
D394V10, multiclass
        clus
vv       FUBP3 MUTATED FUBP3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP3 MUTATED        0      0      0      2
  FUBP3 WILD-TYPE     33     31     27     17
D394V11, multiclass
[1] "Remove cluster labels:" "FUBP3 MUTATED"         
clus
  FUBP3 MUTATED FUBP3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUBP3 MUTATED        2      0      0      0
  FUBP3 WILD-TYPE     52     10     24     22
D394V12, multiclass
[1] "Remove cluster labels:" "FUBP3 MUTATED"         
clus
  FUBP3 MUTATED FUBP3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" "FUBP3 WILD-TYPE" 

Clustering(395) Variable = TOB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        0      0      0      2
  TOB1 WILD-TYPE     46     58     64     41
D395V1, multiclass
[1] "Remove cluster labels:" "TOB1 MUTATED"          
clus
  TOB1 MUTATED TOB1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AY-4071 
"TOB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOB1 MUTATED        0      0      2
  TOB1 WILD-TYPE     51     83     75
D395V2, multiclass
[1] "Remove cluster labels:" "TOB1 MUTATED"          
clus
  TOB1 MUTATED TOB1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" "TOB1 WILD-TYPE" 
    TCGA-AY-4071 
"TOB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        5      1      2      0
  TOB1 WILD-TYPE    173    182     99     20
D395V3, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOB1 MUTATED        1      1      4
  TOB1 WILD-TYPE     86     79     96
D395V4, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOB1 MUTATED        1      1      4
  TOB1 WILD-TYPE     88    159    134
D395V5, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOB1 MUTATED        3      3      0
  TOB1 WILD-TYPE    179    130     72
D395V6, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        1      5      0      2
  TOB1 WILD-TYPE    111     91     92    184
D395V7, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            0             92
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOB1 MUTATED        1      3      2      0      1      0      1
  TOB1 WILD-TYPE     59     47     47     40     62    125     98
D395V8, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        4      1      0      3
  TOB1 WILD-TYPE    126     77     68    193
D395V9, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TOB1 MUTATED        2      1      1      1      2      0      1      0      0
  TOB1 WILD-TYPE     38     61     27     79     67     48     42     28     74
D395V10, multiclass
        clus
vv       TOB1 MUTATED TOB1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        0      0      0      0
  TOB1 WILD-TYPE     33     31     27     19
D395V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOB1 MUTATED        0      0      0      0
  TOB1 WILD-TYPE     54     10     24     22
D395V12, multiclass

Clustering(396) Variable = DAXX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAXX MUTATED        0      0      0      1
  DAXX WILD-TYPE     46     58     64     42
D396V1, multiclass
[1] "Remove cluster labels:" "DAXX MUTATED"          
clus
  DAXX MUTATED DAXX WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DAXX MUTATED        0      0      1
  DAXX WILD-TYPE     51     83     76
D396V2, multiclass
[1] "Remove cluster labels:" "DAXX MUTATED"          
clus
  DAXX MUTATED DAXX WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" "DAXX WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"DAXX WILD-TYPE" "DAXX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAXX MUTATED        6      4      6      0
  DAXX WILD-TYPE    172    179     95     20
D396V3, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            6            172
  CLUS_2            4            179
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DAXX MUTATED        6      6      3
  DAXX WILD-TYPE     81     74     97
D396V4, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            6             81
  CLUS_2            6             74
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DAXX MUTATED        1      4     10
  DAXX WILD-TYPE     88    156    128
D396V5, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DAXX MUTATED       11      3      1
  DAXX WILD-TYPE    171    130     71
D396V6, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1           11            171
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAXX MUTATED        6      4      5      1
  DAXX WILD-TYPE    106     92     87    185
D396V7, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            6            106
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DAXX MUTATED        5      1      5      1      3      0      1
  DAXX WILD-TYPE     55     49     44     39     60    125     98
D396V8, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            5             55
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAXX MUTATED        9      5      2      0
  DAXX WILD-TYPE    121     73     66    196
D396V9, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            9            121
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DAXX MUTATED        0      5      2      3      2      1      2      0      1
  DAXX WILD-TYPE     40     57     26     77     67     47     41     28     73
D396V10, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            0             40
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAXX MUTATED        0      2      2      3
  DAXX WILD-TYPE     33     29     25     16
D396V11, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            2             25
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAXX MUTATED        4      0      3      0
  DAXX WILD-TYPE     50     10     21     22
D396V12, multiclass
        clus
vv       DAXX MUTATED DAXX WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(397) Variable = MARK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARK1 MUTATED        3      1      0      4
  MARK1 WILD-TYPE     43     57     64     39
D397V1, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MARK1 MUTATED        4      1      3
  MARK1 WILD-TYPE     47     82     74
D397V2, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARK1 MUTATED       16      4      7      2
  MARK1 WILD-TYPE    162    179     94     18
D397V3, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             4             179
  CLUS_3             7              94
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MARK1 MUTATED        8      4      9
  MARK1 WILD-TYPE     79     76     91
D397V4, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             4              76
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MARK1 MUTATED        2     11      7
  MARK1 WILD-TYPE     87    149    131
D397V5, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            11             149
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MARK1 MUTATED        8     10      2
  MARK1 WILD-TYPE    174    123     70
D397V6, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARK1 MUTATED        7      9      4      9
  MARK1 WILD-TYPE    105     87     88    177
D397V7, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             7             105
  CLUS_2             9              87
  CLUS_3             4              88
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MARK1 MUTATED        6      2      3      3      5      3      7
  MARK1 WILD-TYPE     54     48     46     37     58    122     92
D397V8, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             5              58
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARK1 MUTATED       11      4      2     12
  MARK1 WILD-TYPE    119     74     66    184
D397V9, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MARK1 MUTATED        5      2      2      3      8      1      3      1
  MARK1 WILD-TYPE     35     60     26     77     61     47     40     27
                 vv
clus              CLUS_9
  MARK1 MUTATED        4
  MARK1 WILD-TYPE     70
D397V10, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARK1 MUTATED        1      2      2      1
  MARK1 WILD-TYPE     32     29     25     18
D397V11, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARK1 MUTATED        3      0      2      1
  MARK1 WILD-TYPE     51     10     22     21
D397V12, multiclass
        clus
vv       MARK1 MUTATED MARK1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(398) Variable = USP25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP25 MUTATED        1      0      1      2
  USP25 WILD-TYPE     45     58     63     41
D398V1, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP25 MUTATED        2      0      2
  USP25 WILD-TYPE     49     83     75
D398V2, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP25 MUTATED       10     10      2      0
  USP25 WILD-TYPE    168    173     99     20
D398V3, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1            10             168
  CLUS_2            10             173
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP25 MUTATED        8      5      6
  USP25 WILD-TYPE     79     75     94
D398V4, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             5              75
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP25 MUTATED        3     10      7
  USP25 WILD-TYPE     86    150    131
D398V5, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            10             150
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP25 MUTATED        8     10      2
  USP25 WILD-TYPE    174    123     70
D398V6, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             8             174
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP25 MUTATED        6      5      7      5
  USP25 WILD-TYPE    106     91     85    181
D398V7, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP25 MUTATED        5      4      3      1      6      2      2
  USP25 WILD-TYPE     55     46     46     39     57    123     97
D398V8, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             6              57
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP25 MUTATED        9      6      1      6
  USP25 WILD-TYPE    121     72     67    190
D398V9, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP25 MUTATED        4      6      1      4      4      1      1      0
  USP25 WILD-TYPE     36     56     27     76     65     47     42     28
                 vv
clus              CLUS_9
  USP25 MUTATED        1
  USP25 WILD-TYPE     73
D398V10, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP25 MUTATED        2      2      0      1
  USP25 WILD-TYPE     31     29     27     18
D398V11, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP25 MUTATED        3      1      1      0
  USP25 WILD-TYPE     51      9     23     22
D398V12, multiclass
        clus
vv       USP25 MUTATED USP25 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(399) Variable = TOPORS MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPORS MUTATED        4      1      1      4
  TOPORS WILD-TYPE     42     57     63     39
D399V1, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TOPORS MUTATED        4      2      4
  TOPORS WILD-TYPE     47     81     73
D399V2, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPORS MUTATED       10      6      5      0
  TOPORS WILD-TYPE    168    177     96     20
D399V3, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1             10              168
  CLUS_2              6              177
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TOPORS MUTATED        5      3      4
  TOPORS WILD-TYPE     82     77     96
D399V4, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TOPORS MUTATED        2      6      8
  TOPORS WILD-TYPE     87    154    130
D399V5, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TOPORS MUTATED       11      4      1
  TOPORS WILD-TYPE    171    129     71
D399V6, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1             11              171
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPORS MUTATED        4      7      2      9
  TOPORS WILD-TYPE    108     89     90    177
D399V7, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              4              108
  CLUS_2              7               89
  CLUS_3              2               90
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOPORS MUTATED        4      3      2      4      0      3      6
  TOPORS WILD-TYPE     56     47     47     36     63    122     93
D399V8, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              4               56
  CLUS_2              3               47
  CLUS_3              2               47
  CLUS_4              4               36
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPORS MUTATED        9      0      3      8
  TOPORS WILD-TYPE    121     78     65    188
D399V9, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              9              121
  CLUS_2              0               78
  CLUS_3              3               65
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TOPORS MUTATED        3      0      1      5      5      1      3      0
  TOPORS WILD-TYPE     37     62     27     75     64     47     40     28
                  vv
clus               CLUS_9
  TOPORS MUTATED        2
  TOPORS WILD-TYPE     72
D399V10, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              3               37
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              5               75
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPORS MUTATED        2      0      2      2
  TOPORS WILD-TYPE     31     31     25     17
D399V11, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPORS MUTATED        1      0      3      2
  TOPORS WILD-TYPE     53     10     21     20
D399V12, multiclass
        clus
vv       TOPORS MUTATED TOPORS WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(400) Variable = ENPEP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPEP MUTATED        4      0      0      4
  ENPEP WILD-TYPE     42     58     64     39
D400V1, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPEP MUTATED        3      2      3
  ENPEP WILD-TYPE     48     81     74
D400V2, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPEP MUTATED       17      4      1      1
  ENPEP WILD-TYPE    161    179    100     19
D400V3, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1            17             161
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPEP MUTATED        8      2      5
  ENPEP WILD-TYPE     79     78     95
D400V4, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPEP MUTATED        4      8      6
  ENPEP WILD-TYPE     85    152    132
D400V5, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             4              85
  CLUS_2             8             152
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPEP MUTATED        7      7      4
  ENPEP WILD-TYPE    175    126     68
D400V6, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             7             175
  CLUS_2             7             126
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPEP MUTATED        2      6      6      9
  ENPEP WILD-TYPE    110     90     86    177
D400V7, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENPEP MUTATED        3      4      4      2      2      1      7
  ENPEP WILD-TYPE     57     46     45     38     61    124     92
D400V8, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPEP MUTATED        7      5      1     10
  ENPEP WILD-TYPE    123     73     67    186
D400V9, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             7             123
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ENPEP MUTATED        3      4      1      3      7      1      2      0
  ENPEP WILD-TYPE     37     58     27     77     62     47     41     28
                 vv
clus              CLUS_9
  ENPEP MUTATED        2
  ENPEP WILD-TYPE     72
D400V10, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPEP MUTATED        3      2      0      2
  ENPEP WILD-TYPE     30     29     27     17
D400V11, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPEP MUTATED        6      0      0      1
  ENPEP WILD-TYPE     48     10     24     21
D400V12, multiclass
        clus
vv       ENPEP MUTATED ENPEP WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(401) Variable = RING1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        1      0      0      0
  RING1 WILD-TYPE     45     58     64     43
D401V1, multiclass
[1] "Remove cluster labels:" "RING1 MUTATED"         
clus
  RING1 MUTATED RING1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        0      1      0
  RING1 WILD-TYPE     51     82     77
D401V2, multiclass
[1] "Remove cluster labels:" "RING1 MUTATED"         
clus
  RING1 MUTATED RING1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" "RING1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RING1 WILD-TYPE" "RING1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED       10      1      0      0
  RING1 WILD-TYPE    168    182    101     20
D401V3, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        4      0      6
  RING1 WILD-TYPE     83     80     94
D401V4, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        2      2      6
  RING1 WILD-TYPE     87    158    132
D401V5, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        4      4      2
  RING1 WILD-TYPE    178    129     70
D401V6, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        1      6      3      1
  RING1 WILD-TYPE    111     90     89    185
D401V7, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RING1 MUTATED        1      3      5      1      0      1      0
  RING1 WILD-TYPE     59     47     44     39     63    124     99
D401V8, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        6      2      0      3
  RING1 WILD-TYPE    124     76     68    193
D401V9, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RING1 MUTATED        2      1      0      2      3      1      1      0
  RING1 WILD-TYPE     38     61     28     78     66     47     42     28
                 vv
clus              CLUS_9
  RING1 MUTATED        1
  RING1 WILD-TYPE     73
D401V10, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        2      0      0      1
  RING1 WILD-TYPE     31     31     27     18
D401V11, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        1      0      1      1
  RING1 WILD-TYPE     53     10     23     21
D401V12, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(402) Variable = NGEF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        0      0      1      0
  NGEF WILD-TYPE     46     58     63     43
D402V1, multiclass
[1] "Remove cluster labels:" "NGEF MUTATED"          
clus
  NGEF MUTATED NGEF WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3851     TCGA-AA-3852 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        0      0      1
  NGEF WILD-TYPE     51     83     76
D402V2, multiclass
[1] "Remove cluster labels:" "NGEF MUTATED"          
clus
  NGEF MUTATED NGEF WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3851     TCGA-AA-3852 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        7      4      7      0
  NGEF WILD-TYPE    171    179     94     20
D402V3, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            7            171
  CLUS_2            4            179
  CLUS_3            7             94
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        5      6      6
  NGEF WILD-TYPE     82     74     94
D402V4, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            5             82
  CLUS_2            6             74
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        0      7      9
  NGEF WILD-TYPE     89    153    129
D402V5, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            0             89
  CLUS_2            7            153
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NGEF MUTATED        9      6      1
  NGEF WILD-TYPE    173    127     71
D402V6, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            9            173
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        7      5      5      1
  NGEF WILD-TYPE    105     91     87    185
D402V7, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            7            105
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NGEF MUTATED        5      3      4      2      3      1      0
  NGEF WILD-TYPE     55     47     45     38     60    124     99
D402V8, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            5             55
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED       10      2      3      3
  NGEF WILD-TYPE    120     76     65    193
D402V9, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1           10            120
  CLUS_2            2             76
  CLUS_3            3             65
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NGEF MUTATED        3      3      4      0      3      2      1      1      1
  NGEF WILD-TYPE     37     59     24     80     66     46     42     27     73
D402V10, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            4             24
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        1      0      2      2
  NGEF WILD-TYPE     32     31     25     17
D402V11, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NGEF MUTATED        2      0      3      0
  NGEF WILD-TYPE     52     10     21     22
D402V12, multiclass
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(403) Variable = MMAA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMAA MUTATED        0      0      1      2
  MMAA WILD-TYPE     46     58     63     41
D403V1, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMAA MUTATED        1      0      2
  MMAA WILD-TYPE     50     83     75
D403V2, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMAA MUTATED        7      3      1      1
  MMAA WILD-TYPE    171    180    100     19
D403V3, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            7            171
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMAA MUTATED        5      2      2
  MMAA WILD-TYPE     82     78     98
D403V4, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMAA MUTATED        3      3      5
  MMAA WILD-TYPE     86    157    133
D403V5, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            3             86
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMAA MUTATED        6      2      3
  MMAA WILD-TYPE    176    131     69
D403V6, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            6            176
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMAA MUTATED        0      3      5      4
  MMAA WILD-TYPE    112     93     87    182
D403V7, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMAA MUTATED        2      2      1      0      4      2      1
  MMAA WILD-TYPE     58     48     48     40     59    123     98
D403V8, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMAA MUTATED        2      4      1      4
  MMAA WILD-TYPE    128     74     67    192
D403V9, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            2            128
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MMAA MUTATED        3      2      0      1      2      1      0      0      2
  MMAA WILD-TYPE     37     60     28     79     67     47     43     28     72
D403V10, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMAA MUTATED        2      1      1      0
  MMAA WILD-TYPE     31     30     26     19
D403V11, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMAA MUTATED        3      0      1      0
  MMAA WILD-TYPE     51     10     23     22
D403V12, multiclass
        clus
vv       MMAA MUTATED MMAA WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(404) Variable = ZNF630 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF630 MUTATED        1      0      0      2
  ZNF630 WILD-TYPE     45     58     64     41
D404V1, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF630 MUTATED        1      1      1
  ZNF630 WILD-TYPE     50     82     76
D404V2, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF630 MUTATED        5      3      1      0
  ZNF630 WILD-TYPE    173    180    100     20
D404V3, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF630 MUTATED        2      2      2
  ZNF630 WILD-TYPE     85     78     98
D404V4, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF630 MUTATED        0      4      3
  ZNF630 WILD-TYPE     89    156    135
D404V5, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF630 MUTATED        3      3      1
  ZNF630 WILD-TYPE    179    130     71
D404V6, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF630 MUTATED        2      3      0      4
  ZNF630 WILD-TYPE    110     93     92    182
D404V7, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              0               92
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF630 MUTATED        2      1      1      1      1      2      1
  ZNF630 WILD-TYPE     58     49     48     39     62    123     98
D404V8, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF630 MUTATED        2      0      1      6
  ZNF630 WILD-TYPE    128     78     67    190
D404V9, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF630 MUTATED        0      0      0      3      3      0      1      0
  ZNF630 WILD-TYPE     40     62     28     77     66     48     42     28
                  vv
clus               CLUS_9
  ZNF630 MUTATED        2
  ZNF630 WILD-TYPE     72
D404V10, multiclass
        clus
vv       ZNF630 MUTATED ZNF630 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF630 MUTATED        0      0      0      0
  ZNF630 WILD-TYPE     33     31     27     19
D404V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF630 MUTATED        0      0      0      0
  ZNF630 WILD-TYPE     54     10     24     22
D404V12, multiclass

Clustering(405) Variable = KIR2DL3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIR2DL3 MUTATED        2      0      0      0
  KIR2DL3 WILD-TYPE     44     58     64     43
D405V1, multiclass
[1] "Remove cluster labels:" "KIR2DL3 MUTATED"       
clus
  KIR2DL3 MUTATED KIR2DL3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AY-4071 
"KIR2DL3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIR2DL3 MUTATED        1      1      0
  KIR2DL3 WILD-TYPE     50     82     77
D405V2, multiclass
[1] "Remove cluster labels:" "KIR2DL3 MUTATED"       
clus
  KIR2DL3 MUTATED KIR2DL3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" "KIR2DL3 WILD-TYPE" 
       TCGA-AY-4071 
"KIR2DL3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIR2DL3 MUTATED        7      8      3      0
  KIR2DL3 WILD-TYPE    171    175     98     20
D405V3, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               8               175
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIR2DL3 MUTATED        8      4      5
  KIR2DL3 WILD-TYPE     79     76     95
D405V4, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               8                79
  CLUS_2               4                76
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIR2DL3 MUTATED        3      4      8
  KIR2DL3 WILD-TYPE     86    156    130
D405V5, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               4               156
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIR2DL3 MUTATED       10      4      1
  KIR2DL3 WILD-TYPE    172    129     71
D405V6, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1              10               172
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIR2DL3 MUTATED        7      3      5      4
  KIR2DL3 WILD-TYPE    105     93     87    182
D405V7, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               7               105
  CLUS_2               3                93
  CLUS_3               5                87
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIR2DL3 MUTATED        2      3      3      4      3      3      1
  KIR2DL3 WILD-TYPE     58     47     46     36     60    122     98
D405V8, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               3                46
  CLUS_4               4                36
  CLUS_5               3                60
  CLUS_6               3               122
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIR2DL3 MUTATED        7      7      1      4
  KIR2DL3 WILD-TYPE    123     71     67    192
D405V9, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               7                71
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIR2DL3 MUTATED        4      4      0      5      1      0      2      1
  KIR2DL3 WILD-TYPE     36     58     28     75     68     48     41     27
                   vv
clus                CLUS_9
  KIR2DL3 MUTATED        2
  KIR2DL3 WILD-TYPE     72
D405V10, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               4                36
  CLUS_2               4                58
  CLUS_3               0                28
  CLUS_4               5                75
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIR2DL3 MUTATED        0      2      0      1
  KIR2DL3 WILD-TYPE     33     29     27     18
D405V11, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIR2DL3 MUTATED        3      0      0      0
  KIR2DL3 WILD-TYPE     51     10     24     22
D405V12, multiclass
        clus
vv       KIR2DL3 MUTATED KIR2DL3 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(406) Variable = SLC7A6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A6 MUTATED        0      0      0      0
  SLC7A6 WILD-TYPE     46     58     64     43
D406V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC7A6 MUTATED        0      0      0
  SLC7A6 WILD-TYPE     51     83     77
D406V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A6 MUTATED        2      1      3      1
  SLC7A6 WILD-TYPE    176    182     98     19
D406V3, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC7A6 MUTATED        1      2      4
  SLC7A6 WILD-TYPE     86     78     96
D406V4, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC7A6 MUTATED        0      2      4
  SLC7A6 WILD-TYPE     89    158    134
D406V5, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC7A6 MUTATED        4      1      1
  SLC7A6 WILD-TYPE    178    132     71
D406V6, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A6 MUTATED        3      3      1      0
  SLC7A6 WILD-TYPE    109     93     91    186
D406V7, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC7A6 MUTATED        1      3      1      1      1      0      0
  SLC7A6 WILD-TYPE     59     47     48     39     62    125     99
D406V8, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A6 MUTATED        6      0      1      0
  SLC7A6 WILD-TYPE    124     78     67    196
D406V9, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC7A6 MUTATED        1      0      2      1      1      1      1      0
  SLC7A6 WILD-TYPE     39     62     26     79     68     47     42     28
                  vv
clus               CLUS_9
  SLC7A6 MUTATED        0
  SLC7A6 WILD-TYPE     74
D406V10, multiclass
        clus
vv       SLC7A6 MUTATED SLC7A6 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A6 MUTATED        1      0      1      0
  SLC7A6 WILD-TYPE     32     31     26     19
D406V11, multiclass
[1] "Remove cluster labels:" "SLC7A6 MUTATED"        
clus
  SLC7A6 MUTATED SLC7A6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-D5-5537 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A6 MUTATED        1      0      0      1
  SLC7A6 WILD-TYPE     53     10     24     21
D406V12, multiclass
[1] "Remove cluster labels:" "SLC7A6 MUTATED"        
clus
  SLC7A6 MUTATED SLC7A6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-D5-5537 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" "SLC7A6 WILD-TYPE" 

Clustering(407) Variable = JMJD1C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD1C MUTATED        6      1      0      1
  JMJD1C WILD-TYPE     40     57     64     42
D407V1, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              6               40
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JMJD1C MUTATED        3      5      0
  JMJD1C WILD-TYPE     48     78     77
D407V2, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              3               48
  CLUS_2              5               78
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD1C MUTATED       17      6      3      1
  JMJD1C WILD-TYPE    161    177     98     19
D407V3, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1             17              161
  CLUS_2              6              177
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JMJD1C MUTATED        8      2      9
  JMJD1C WILD-TYPE     79     78     91
D407V4, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              8               79
  CLUS_2              2               78
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JMJD1C MUTATED        2      6     13
  JMJD1C WILD-TYPE     87    154    125
D407V5, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JMJD1C MUTATED       14      7      0
  JMJD1C WILD-TYPE    168    126     72
D407V6, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1             14              168
  CLUS_2              7              126
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD1C MUTATED        4      7      7      9
  JMJD1C WILD-TYPE    108     89     85    177
D407V7, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              4              108
  CLUS_2              7               89
  CLUS_3              7               85
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JMJD1C MUTATED        4      5      7      0      2      3      6
  JMJD1C WILD-TYPE     56     45     42     40     61    122     93
D407V8, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              4               56
  CLUS_2              5               45
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD1C MUTATED        8      5      3     10
  JMJD1C WILD-TYPE    122     73     65    186
D407V9, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              8              122
  CLUS_2              5               73
  CLUS_3              3               65
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  JMJD1C MUTATED        3      4      3      3      3      1      3      3
  JMJD1C WILD-TYPE     37     58     25     77     66     47     40     25
                  vv
clus               CLUS_9
  JMJD1C MUTATED        3
  JMJD1C WILD-TYPE     71
D407V10, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              3               37
  CLUS_2              4               58
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              3               25
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD1C MUTATED        4      0      2      0
  JMJD1C WILD-TYPE     29     31     25     19
D407V11, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              4               29
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD1C MUTATED        4      0      1      1
  JMJD1C WILD-TYPE     50     10     23     21
D407V12, multiclass
        clus
vv       JMJD1C MUTATED JMJD1C WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(408) Variable = C6ORF170 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF170 MUTATED        4      0      0      3
  C6ORF170 WILD-TYPE     42     58     64     40
D408V1, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF170 MUTATED        3      2      2
  C6ORF170 WILD-TYPE     48     81     75
D408V2, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF170 MUTATED       14      6      1      2
  C6ORF170 WILD-TYPE    164    177    100     18
D408V3, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                6                177
  CLUS_3                1                100
  CLUS_4                2                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF170 MUTATED        8      2      6
  C6ORF170 WILD-TYPE     79     78     94
D408V4, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                2                 78
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF170 MUTATED        3      7      9
  C6ORF170 WILD-TYPE     86    153    129
D408V5, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                7                153
  CLUS_3                9                129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF170 MUTATED        8      7      4
  C6ORF170 WILD-TYPE    174    126     68
D408V6, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                8                174
  CLUS_2                7                126
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF170 MUTATED        4      3      8      8
  C6ORF170 WILD-TYPE    108     93     84    178
D408V7, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                4                108
  CLUS_2                3                 93
  CLUS_3                8                 84
  CLUS_4                8                178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF170 MUTATED        2      3      2      3      6      2      5
  C6ORF170 WILD-TYPE     58     47     47     37     57    123     94
D408V8, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                3                 47
  CLUS_3                2                 47
  CLUS_4                3                 37
  CLUS_5                6                 57
  CLUS_6                2                123
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF170 MUTATED        6      6      2      9
  C6ORF170 WILD-TYPE    124     72     66    187
D408V9, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                6                 72
  CLUS_3                2                 66
  CLUS_4                9                187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF170 MUTATED        1      6      2      4      5      0      2      0
  C6ORF170 WILD-TYPE     39     56     26     76     64     48     41     28
                    vv
clus                 CLUS_9
  C6ORF170 MUTATED        3
  C6ORF170 WILD-TYPE     71
D408V10, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                6                 56
  CLUS_3                2                 26
  CLUS_4                4                 76
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF170 MUTATED        3      1      1      2
  C6ORF170 WILD-TYPE     30     30     26     17
D408V11, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF170 MUTATED        4      0      2      1
  C6ORF170 WILD-TYPE     50     10     22     21
D408V12, multiclass
        clus
vv       C6ORF170 MUTATED C6ORF170 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(409) Variable = MSH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED        1      0      1      4
  MSH2 WILD-TYPE     45     58     63     39
D409V1, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        2      2      2
  MSH2 WILD-TYPE     49     81     75
D409V2, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED       22      9      4      2
  MSH2 WILD-TYPE    156    174     97     18
D409V3, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1           22            156
  CLUS_2            9            174
  CLUS_3            4             97
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED       13      5     13
  MSH2 WILD-TYPE     74     75     87
D409V4, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1           13             74
  CLUS_2            5             75
  CLUS_3           13             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED        4     14     12
  MSH2 WILD-TYPE     85    146    126
D409V5, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            4             85
  CLUS_2           14            146
  CLUS_3           12            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH2 MUTATED       14     12      4
  MSH2 WILD-TYPE    168    121     68
D409V6, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1           14            168
  CLUS_2           12            121
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED        7     12     11      7
  MSH2 WILD-TYPE    105     84     81    179
D409V7, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            7            105
  CLUS_2           12             84
  CLUS_3           11             81
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MSH2 MUTATED        5      9     10      3      3      2      5
  MSH2 WILD-TYPE     55     41     39     37     60    123     94
D409V8, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            9             41
  CLUS_3           10             39
  CLUS_4            3             37
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED       19      8      1      8
  MSH2 WILD-TYPE    111     70     67    188
D409V9, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1           19            111
  CLUS_2            8             70
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MSH2 MUTATED        3      8      4      6      7      3      2      0      3
  MSH2 WILD-TYPE     37     54     24     74     62     45     41     28     71
D409V10, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            8             54
  CLUS_3            4             24
  CLUS_4            6             74
  CLUS_5            7             62
  CLUS_6            3             45
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED        2      2      0      3
  MSH2 WILD-TYPE     31     29     27     16
D409V11, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH2 MUTATED        4      0      2      1
  MSH2 WILD-TYPE     50     10     22     21
D409V12, multiclass
        clus
vv       MSH2 MUTATED MSH2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(410) Variable = EP300 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        4      1      0      7
  EP300 WILD-TYPE     42     57     64     36
D410V1, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        8      2      2
  EP300 WILD-TYPE     43     81     75
D410V2, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       30      8      5      3
  EP300 WILD-TYPE    148    175     96     17
D410V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            30             148
  CLUS_2             8             175
  CLUS_3             5              96
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       16      3     15
  EP300 WILD-TYPE     71     77     85
D410V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            16              71
  CLUS_2             3              77
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED        9     11     18
  EP300 WILD-TYPE     80    149    120
D410V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             9              80
  CLUS_2            11             149
  CLUS_3            18             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP300 MUTATED       22     10      6
  EP300 WILD-TYPE    160    123     66
D410V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            22             160
  CLUS_2            10             123
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        5     20      8     13
  EP300 WILD-TYPE    107     76     84    173
D410V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             5             107
  CLUS_2            20              76
  CLUS_3             8              84
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EP300 MUTATED        3      9      9      7      6      2     10
  EP300 WILD-TYPE     57     41     40     33     57    123     89
D410V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             9              41
  CLUS_3             9              40
  CLUS_4             7              33
  CLUS_5             6              57
  CLUS_6             2             123
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED       18      6      4     16
  EP300 WILD-TYPE    112     72     64    180
D410V9, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            18             112
  CLUS_2             6              72
  CLUS_3             4              64
  CLUS_4            16             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EP300 MUTATED        7      6      2      9     13      0      4      2
  EP300 WILD-TYPE     33     56     26     71     56     48     39     26
                 vv
clus              CLUS_9
  EP300 MUTATED        1
  EP300 WILD-TYPE     73
D410V10, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7              33
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             9              71
  CLUS_5            13              56
  CLUS_6             0              48
  CLUS_7             4              39
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        2      1      5      6
  EP300 WILD-TYPE     31     30     22     13
D410V11, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             5              22
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP300 MUTATED        4      0      7      3
  EP300 WILD-TYPE     50     10     17     19
D410V12, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             7              17
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(411) Variable = SKIL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIL MUTATED        0      0      0      1
  SKIL WILD-TYPE     46     58     64     42
D411V1, multiclass
[1] "Remove cluster labels:" "SKIL MUTATED"          
clus
  SKIL MUTATED SKIL WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKIL MUTATED        0      0      1
  SKIL WILD-TYPE     51     83     76
D411V2, multiclass
[1] "Remove cluster labels:" "SKIL MUTATED"          
clus
  SKIL MUTATED SKIL WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" "SKIL WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"SKIL WILD-TYPE" "SKIL WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIL MUTATED        4      4      1      0
  SKIL WILD-TYPE    174    179    100     20
D411V3, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            4            174
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKIL MUTATED        4      1      3
  SKIL WILD-TYPE     83     79     97
D411V4, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKIL MUTATED        0      5      3
  SKIL WILD-TYPE     89    155    135
D411V5, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SKIL MUTATED        3      5      0
  SKIL WILD-TYPE    179    128     72
D411V6, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            3            179
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIL MUTATED        3      5      0      1
  SKIL WILD-TYPE    109     91     92    185
D411V7, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            0             92
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SKIL MUTATED        1      3      3      0      2      0      0
  SKIL WILD-TYPE     59     47     46     40     61    125     99
D411V8, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIL MUTATED        5      2      1      1
  SKIL WILD-TYPE    125     76     67    195
D411V9, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SKIL MUTATED        0      2      0      2      2      0      3      0      0
  SKIL WILD-TYPE     40     60     28     78     67     48     40     28     74
D411V10, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIL MUTATED        0      1      2      0
  SKIL WILD-TYPE     33     30     25     19
D411V11, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIL MUTATED        0      1      2      0
  SKIL WILD-TYPE     54      9     22     22
D411V12, multiclass
        clus
vv       SKIL MUTATED SKIL WILD-TYPE
  CLUS_1            0             54
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(412) Variable = TIAL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIAL1 MUTATED        1      0      0      3
  TIAL1 WILD-TYPE     45     58     64     40
D412V1, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIAL1 MUTATED        3      0      1
  TIAL1 WILD-TYPE     48     83     76
D412V2, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIAL1 MUTATED       12      0      1      0
  TIAL1 WILD-TYPE    166    183    100     20
D412V3, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIAL1 MUTATED        3      1      5
  TIAL1 WILD-TYPE     84     79     95
D412V4, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIAL1 MUTATED        3      4      4
  TIAL1 WILD-TYPE     86    156    134
D412V5, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIAL1 MUTATED        5      4      2
  TIAL1 WILD-TYPE    177    129     70
D412V6, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIAL1 MUTATED        1      5      3      4
  TIAL1 WILD-TYPE    111     91     89    182
D412V7, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TIAL1 MUTATED        1      1      6      1      0      0      4
  TIAL1 WILD-TYPE     59     49     43     39     63    125     95
D412V8, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIAL1 MUTATED        5      2      0      6
  TIAL1 WILD-TYPE    125     76     68    190
D412V9, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TIAL1 MUTATED        1      2      1      2      6      0      1      0
  TIAL1 WILD-TYPE     39     60     27     78     63     48     42     28
                 vv
clus              CLUS_9
  TIAL1 MUTATED        0
  TIAL1 WILD-TYPE     74
D412V10, multiclass
        clus
vv       TIAL1 MUTATED TIAL1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIAL1 MUTATED        0      0      0      1
  TIAL1 WILD-TYPE     33     31     27     18
D412V11, multiclass
[1] "Remove cluster labels:" "TIAL1 MUTATED"         
clus
  TIAL1 MUTATED TIAL1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-G5-6641 
"TIAL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIAL1 MUTATED        1      0      0      0
  TIAL1 WILD-TYPE     53     10     24     22
D412V12, multiclass
[1] "Remove cluster labels:" "TIAL1 MUTATED"         
clus
  TIAL1 MUTATED TIAL1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" "TIAL1 WILD-TYPE" 
     TCGA-G5-6641 
"TIAL1 WILD-TYPE" 

Clustering(413) Variable = OR2T33 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        3      0      0      2
  OR2T33 WILD-TYPE     43     58     64     41
D413V1, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T33 MUTATED        2      2      1
  OR2T33 WILD-TYPE     49     81     76
D413V2, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED       10      4      3      1
  OR2T33 WILD-TYPE    168    179     98     19
D413V3, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T33 MUTATED        6      3      3
  OR2T33 WILD-TYPE     81     77     97
D413V4, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T33 MUTATED        4      4      6
  OR2T33 WILD-TYPE     85    156    132
D413V5, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              4              156
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T33 MUTATED        6      6      2
  OR2T33 WILD-TYPE    176    127     70
D413V6, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        2      5      5      6
  OR2T33 WILD-TYPE    110     91     87    180
D413V7, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2T33 MUTATED        3      3      1      2      3      2      4
  OR2T33 WILD-TYPE     57     47     48     38     60    123     95
D413V8, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        6      2      1      9
  OR2T33 WILD-TYPE    124     76     67    187
D413V9, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2T33 MUTATED        3      2      3      3      3      0      2      0
  OR2T33 WILD-TYPE     37     60     25     77     66     48     41     28
                  vv
clus               CLUS_9
  OR2T33 MUTATED        2
  OR2T33 WILD-TYPE     72
D413V10, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        1      2      0      0
  OR2T33 WILD-TYPE     32     29     27     19
D413V11, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T33 MUTATED        3      0      0      0
  OR2T33 WILD-TYPE     51     10     24     22
D413V12, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(414) Variable = SMC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC2 MUTATED        0      0      2      2
  SMC2 WILD-TYPE     46     58     62     41
D414V1, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC2 MUTATED        0      0      4
  SMC2 WILD-TYPE     51     83     73
D414V2, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            0             83
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC2 MUTATED       18      8      3      0
  SMC2 WILD-TYPE    160    175     98     20
D414V3, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            8            175
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC2 MUTATED        8      6     10
  SMC2 WILD-TYPE     79     74     90
D414V4, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            6             74
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC2 MUTATED        4     12      8
  SMC2 WILD-TYPE     85    148    130
D414V5, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            4             85
  CLUS_2           12            148
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC2 MUTATED       12     10      2
  SMC2 WILD-TYPE    170    123     70
D414V6, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1           12            170
  CLUS_2           10            123
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC2 MUTATED        8     11      6      4
  SMC2 WILD-TYPE    104     85     86    182
D414V7, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            8            104
  CLUS_2           11             85
  CLUS_3            6             86
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMC2 MUTATED        6      8      7      2      3      1      2
  SMC2 WILD-TYPE     54     42     42     38     60    124     97
D414V8, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            8             42
  CLUS_3            7             42
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC2 MUTATED       14      5      3      7
  SMC2 WILD-TYPE    116     73     65    189
D414V9, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1           14            116
  CLUS_2            5             73
  CLUS_3            3             65
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMC2 MUTATED        4      2      2      4      8      4      3      0      2
  SMC2 WILD-TYPE     36     60     26     76     61     44     40     28     72
D414V10, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5            8             61
  CLUS_6            4             44
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC2 MUTATED        1      1      2      4
  SMC2 WILD-TYPE     32     30     25     15
D414V11, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC2 MUTATED        2      0      4      2
  SMC2 WILD-TYPE     52     10     20     20
D414V12, multiclass
        clus
vv       SMC2 MUTATED SMC2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            4             20
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(415) Variable = C14ORF159 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF159 MUTATED        0      0      0      2
  C14ORF159 WILD-TYPE     46     58     64     41
D415V1, multiclass
[1] "Remove cluster labels:" "C14ORF159 MUTATED"     
clus
  C14ORF159 MUTATED C14ORF159 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A017          TCGA-AA-A01D 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01Q          TCGA-AA-A024 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02W          TCGA-AF-2689 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3574          TCGA-AG-3575 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3578          TCGA-AG-3580          TCGA-AG-3581 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3584 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3586          TCGA-AG-3587          TCGA-AG-3593 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3594          TCGA-AG-3598          TCGA-AG-3599 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3600          TCGA-AG-3601          TCGA-AG-3602 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3605          TCGA-AG-3608          TCGA-AG-3609 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3611          TCGA-AG-3612          TCGA-AG-3726 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3881 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3882          TCGA-AG-3883          TCGA-AG-3885 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3890          TCGA-AG-3892 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3896 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3898          TCGA-AG-3901          TCGA-AG-3902 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3909          TCGA-AG-3999          TCGA-AG-4001 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A008          TCGA-AG-A00C 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF159 MUTATED        0      1      1
  C14ORF159 WILD-TYPE     51     82     76
D415V2, multiclass
[1] "Remove cluster labels:" "C14ORF159 MUTATED"     
clus
  C14ORF159 MUTATED C14ORF159 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A017          TCGA-AA-A01D 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01Q          TCGA-AA-A024 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02W          TCGA-AF-2689 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3574          TCGA-AG-3575 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3578          TCGA-AG-3580          TCGA-AG-3581 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3584 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3586          TCGA-AG-3587          TCGA-AG-3593 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3594          TCGA-AG-3598          TCGA-AG-3599 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3600          TCGA-AG-3601          TCGA-AG-3602 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3605          TCGA-AG-3608          TCGA-AG-3609 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3611          TCGA-AG-3612          TCGA-AG-3726 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3881 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3882          TCGA-AG-3883          TCGA-AG-3885 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3890          TCGA-AG-3892 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3896 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3898          TCGA-AG-3901          TCGA-AG-3902 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-3909          TCGA-AG-3999          TCGA-AG-4001 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A008          TCGA-AG-A00C 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"C14ORF159 WILD-TYPE" "C14ORF159 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF159 MUTATED        5      3      1      1
  C14ORF159 WILD-TYPE    173    180    100     19
D415V3, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 5                 173
  CLUS_2                 3                 180
  CLUS_3                 1                 100
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF159 MUTATED        3      3      2
  C14ORF159 WILD-TYPE     84     77     98
D415V4, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 3                  84
  CLUS_2                 3                  77
  CLUS_3                 2                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF159 MUTATED        0      3      5
  C14ORF159 WILD-TYPE     89    157    133
D415V5, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 3                 157
  CLUS_3                 5                 133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF159 MUTATED        5      3      0
  C14ORF159 WILD-TYPE    177    130     72
D415V6, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 5                 177
  CLUS_2                 3                 130
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF159 MUTATED        5      1      2      2
  C14ORF159 WILD-TYPE    107     95     90    184
D415V7, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 5                 107
  CLUS_2                 1                  95
  CLUS_3                 2                  90
  CLUS_4                 2                 184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF159 MUTATED        6      0      3      0      0      0      1
  C14ORF159 WILD-TYPE     54     50     46     40     63    125     98
D415V8, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 6                  54
  CLUS_2                 0                  50
  CLUS_3                 3                  46
  CLUS_4                 0                  40
  CLUS_5                 0                  63
  CLUS_6                 0                 125
  CLUS_7                 1                  98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF159 MUTATED        5      1      1      3
  C14ORF159 WILD-TYPE    125     77     67    193
D415V9, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 5                 125
  CLUS_2                 1                  77
  CLUS_3                 1                  67
  CLUS_4                 3                 193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF159 MUTATED        1      2      2      1      2      1      1      0
  C14ORF159 WILD-TYPE     39     60     26     79     67     47     42     28
                     vv
clus                  CLUS_9
  C14ORF159 MUTATED        0
  C14ORF159 WILD-TYPE     74
D415V10, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 2                  60
  CLUS_3                 2                  26
  CLUS_4                 1                  79
  CLUS_5                 2                  67
  CLUS_6                 1                  47
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF159 MUTATED        1      0      1      1
  C14ORF159 WILD-TYPE     32     31     26     18
D415V11, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 0                  31
  CLUS_3                 1                  26
  CLUS_4                 1                  18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF159 MUTATED        1      0      1      1
  C14ORF159 WILD-TYPE     53     10     23     21
D415V12, multiclass
        clus
vv       C14ORF159 MUTATED C14ORF159 WILD-TYPE
  CLUS_1                 1                  53
  CLUS_2                 0                  10
  CLUS_3                 1                  23
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(416) Variable = IQGAP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP2 MUTATED        5      2      1      2
  IQGAP2 WILD-TYPE     41     56     63     41
D416V1, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              2               56
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP2 MUTATED        6      2      2
  IQGAP2 WILD-TYPE     45     81     75
D416V2, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              6               45
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP2 MUTATED       17      6      3      1
  IQGAP2 WILD-TYPE    161    177     98     19
D416V3, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              6              177
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP2 MUTATED        7      3      6
  IQGAP2 WILD-TYPE     80     77     94
D416V4, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              3               77
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP2 MUTATED        2      8     10
  IQGAP2 WILD-TYPE     87    152    128
D416V5, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              8              152
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP2 MUTATED        9      9      2
  IQGAP2 WILD-TYPE    173    124     70
D416V6, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              9              124
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP2 MUTATED        6      6      6      8
  IQGAP2 WILD-TYPE    106     90     86    178
D416V7, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              6               90
  CLUS_3              6               86
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IQGAP2 MUTATED        2      2      6      4      3      3      6
  IQGAP2 WILD-TYPE     58     48     43     36     60    122     93
D416V8, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              6               43
  CLUS_4              4               36
  CLUS_5              3               60
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP2 MUTATED        5      5      3     12
  IQGAP2 WILD-TYPE    125     73     65    184
D416V9, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              5               73
  CLUS_3              3               65
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IQGAP2 MUTATED        0      6      3      0     11      3      1      0
  IQGAP2 WILD-TYPE     40     56     25     80     58     45     42     28
                  vv
clus               CLUS_9
  IQGAP2 MUTATED        1
  IQGAP2 WILD-TYPE     73
D416V10, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              6               56
  CLUS_3              3               25
  CLUS_4              0               80
  CLUS_5             11               58
  CLUS_6              3               45
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP2 MUTATED        1      1      2      3
  IQGAP2 WILD-TYPE     32     30     25     16
D416V11, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP2 MUTATED        3      2      2      0
  IQGAP2 WILD-TYPE     51      8     22     22
D416V12, multiclass
        clus
vv       IQGAP2 MUTATED IQGAP2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              2                8
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(417) Variable = DNAH11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH11 MUTATED        9      3      3      7
  DNAH11 WILD-TYPE     37     55     61     36
D417V1, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1              9               37
  CLUS_2              3               55
  CLUS_3              3               61
  CLUS_4              7               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH11 MUTATED       11      5      6
  DNAH11 WILD-TYPE     40     78     71
D417V2, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             11               40
  CLUS_2              5               78
  CLUS_3              6               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH11 MUTATED       37     18     14      5
  DNAH11 WILD-TYPE    141    165     87     15
D417V3, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             37              141
  CLUS_2             18              165
  CLUS_3             14               87
  CLUS_4              5               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH11 MUTATED       20     12     23
  DNAH11 WILD-TYPE     67     68     77
D417V4, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             20               67
  CLUS_2             12               68
  CLUS_3             23               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH11 MUTATED        9     27     31
  DNAH11 WILD-TYPE     80    133    107
D417V5, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1              9               80
  CLUS_2             27              133
  CLUS_3             31              107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH11 MUTATED       28     24     15
  DNAH11 WILD-TYPE    154    109     57
D417V6, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             28              154
  CLUS_2             24              109
  CLUS_3             15               57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH11 MUTATED       14     21     19     21
  DNAH11 WILD-TYPE     98     75     73    165
D417V7, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             14               98
  CLUS_2             21               75
  CLUS_3             19               73
  CLUS_4             21              165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH11 MUTATED        9     13     12      8     10      8     15
  DNAH11 WILD-TYPE     51     37     37     32     53    117     84
D417V8, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1              9               51
  CLUS_2             13               37
  CLUS_3             12               37
  CLUS_4              8               32
  CLUS_5             10               53
  CLUS_6              8              117
  CLUS_7             15               84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH11 MUTATED       27     13     10     24
  DNAH11 WILD-TYPE    103     65     58    172
D417V9, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             27              103
  CLUS_2             13               65
  CLUS_3             10               58
  CLUS_4             24              172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAH11 MUTATED       11     15      5      9     13      5      7      3
  DNAH11 WILD-TYPE     29     47     23     71     56     43     36     25
                  vv
clus               CLUS_9
  DNAH11 MUTATED        6
  DNAH11 WILD-TYPE     68
D417V10, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             11               29
  CLUS_2             15               47
  CLUS_3              5               23
  CLUS_4              9               71
  CLUS_5             13               56
  CLUS_6              5               43
  CLUS_7              7               36
  CLUS_8              3               25
  CLUS_9              6               68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH11 MUTATED        5      4      6      5
  DNAH11 WILD-TYPE     28     27     21     14
D417V11, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              4               27
  CLUS_3              6               21
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH11 MUTATED       10      2      6      2
  DNAH11 WILD-TYPE     44      8     18     20
D417V12, multiclass
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  CLUS_1             10               44
  CLUS_2              2                8
  CLUS_3              6               18
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(418) Variable = EPHA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA7 MUTATED        5      1      1      5
  EPHA7 WILD-TYPE     41     57     63     38
D418V1, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA7 MUTATED        7      3      2
  EPHA7 WILD-TYPE     44     80     75
D418V2, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA7 MUTATED       24      7      7      3
  EPHA7 WILD-TYPE    154    176     94     17
D418V3, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1            24             154
  CLUS_2             7             176
  CLUS_3             7              94
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA7 MUTATED       16      2     14
  EPHA7 WILD-TYPE     71     78     86
D418V4, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1            16              71
  CLUS_2             2              78
  CLUS_3            14              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA7 MUTATED        4     10     19
  EPHA7 WILD-TYPE     85    150    119
D418V5, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            10             150
  CLUS_3            19             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA7 MUTATED       17     11      5
  EPHA7 WILD-TYPE    165    122     67
D418V6, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1            17             165
  CLUS_2            11             122
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA7 MUTATED        4     14     13     11
  EPHA7 WILD-TYPE    108     82     79    175
D418V7, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             4             108
  CLUS_2            14              82
  CLUS_3            13              79
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA7 MUTATED        3      7      9      8      4      2      9
  EPHA7 WILD-TYPE     57     43     40     32     59    123     90
D418V8, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             7              43
  CLUS_3             9              40
  CLUS_4             8              32
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA7 MUTATED       17      7      5     12
  EPHA7 WILD-TYPE    113     71     63    184
D418V9, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1            17             113
  CLUS_2             7              71
  CLUS_3             5              63
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHA7 MUTATED        9      7      3      4     10      1      4      0
  EPHA7 WILD-TYPE     31     55     25     76     59     47     39     28
                 vv
clus              CLUS_9
  EPHA7 MUTATED        3
  EPHA7 WILD-TYPE     71
D418V10, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             9              31
  CLUS_2             7              55
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5            10              59
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA7 MUTATED        4      0      3      4
  EPHA7 WILD-TYPE     29     31     24     15
D418V11, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             0              31
  CLUS_3             3              24
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA7 MUTATED        7      0      3      1
  EPHA7 WILD-TYPE     47     10     21     21
D418V12, multiclass
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(419) Variable = DNAH8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH8 MUTATED        8      0      3      8
  DNAH8 WILD-TYPE     38     58     61     35
D419V1, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1             8              38
  CLUS_2             0              58
  CLUS_3             3              61
  CLUS_4             8              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH8 MUTATED        9      5      5
  DNAH8 WILD-TYPE     42     78     72
D419V2, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             5              78
  CLUS_3             5              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH8 MUTATED       40     14     11      1
  DNAH8 WILD-TYPE    138    169     90     19
D419V3, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            40             138
  CLUS_2            14             169
  CLUS_3            11              90
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH8 MUTATED       18     10     21
  DNAH8 WILD-TYPE     69     70     79
D419V4, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            18              69
  CLUS_2            10              70
  CLUS_3            21              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH8 MUTATED        8     23     26
  DNAH8 WILD-TYPE     81    137    112
D419V5, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1             8              81
  CLUS_2            23             137
  CLUS_3            26             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH8 MUTATED       29     16     12
  DNAH8 WILD-TYPE    153    117     60
D419V6, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            29             153
  CLUS_2            16             117
  CLUS_3            12              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH8 MUTATED       10     20     17     20
  DNAH8 WILD-TYPE    102     76     75    166
D419V7, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            10             102
  CLUS_2            20              76
  CLUS_3            17              75
  CLUS_4            20             166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH8 MUTATED       12      6     15      6      7      6     15
  DNAH8 WILD-TYPE     48     44     34     34     56    119     84
D419V8, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            12              48
  CLUS_2             6              44
  CLUS_3            15              34
  CLUS_4             6              34
  CLUS_5             7              56
  CLUS_6             6             119
  CLUS_7            15              84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH8 MUTATED       25     13      5     22
  DNAH8 WILD-TYPE    105     65     63    174
D419V9, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            25             105
  CLUS_2            13              65
  CLUS_3             5              63
  CLUS_4            22             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAH8 MUTATED       10      8      5      9     16      3      4      5
  DNAH8 WILD-TYPE     30     54     23     71     53     45     39     23
                 vv
clus              CLUS_9
  DNAH8 MUTATED        5
  DNAH8 WILD-TYPE     69
D419V10, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1            10              30
  CLUS_2             8              54
  CLUS_3             5              23
  CLUS_4             9              71
  CLUS_5            16              53
  CLUS_6             3              45
  CLUS_7             4              39
  CLUS_8             5              23
  CLUS_9             5              69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH8 MUTATED        4      2      2      8
  DNAH8 WILD-TYPE     29     29     25     11
D419V11, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             8              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH8 MUTATED        8      1      6      1
  DNAH8 WILD-TYPE     46      9     18     21
D419V12, multiclass
        clus
vv       DNAH8 MUTATED DNAH8 WILD-TYPE
  CLUS_1             8              46
  CLUS_2             1               9
  CLUS_3             6              18
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(420) Variable = MACF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED       13      0      4      7
  MACF1 WILD-TYPE     33     58     60     36
D420V1, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            13              33
  CLUS_2             0              58
  CLUS_3             4              60
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED       15      3      6
  MACF1 WILD-TYPE     36     80     71
D420V2, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            15              36
  CLUS_2             3              80
  CLUS_3             6              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED       46      9      8      2
  MACF1 WILD-TYPE    132    174     93     18
D420V3, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            46             132
  CLUS_2             9             174
  CLUS_3             8              93
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED       16      5     20
  MACF1 WILD-TYPE     71     75     80
D420V4, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            16              71
  CLUS_2             5              75
  CLUS_3            20              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED        9     18     29
  MACF1 WILD-TYPE     80    142    109
D420V5, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             9              80
  CLUS_2            18             142
  CLUS_3            29             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED       29     20      7
  MACF1 WILD-TYPE    153    113     65
D420V6, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            29             153
  CLUS_2            20             113
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED        4     19     17     26
  MACF1 WILD-TYPE    108     77     75    160
D420V7, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2            19              77
  CLUS_3            17              75
  CLUS_4            26             160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MACF1 MUTATED        3      8     19      6      5      5     20
  MACF1 WILD-TYPE     57     42     30     34     58    120     79
D420V8, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             8              42
  CLUS_3            19              30
  CLUS_4             6              34
  CLUS_5             5              58
  CLUS_6             5             120
  CLUS_7            20              79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED       21     11      2     28
  MACF1 WILD-TYPE    109     67     66    168
D420V9, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            21             109
  CLUS_2            11              67
  CLUS_3             2              66
  CLUS_4            28             168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MACF1 MUTATED        7     15      3      5     19      2      5      2
  MACF1 WILD-TYPE     33     47     25     75     50     46     38     26
                 vv
clus              CLUS_9
  MACF1 MUTATED        4
  MACF1 WILD-TYPE     70
D420V10, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             7              33
  CLUS_2            15              47
  CLUS_3             3              25
  CLUS_4             5              75
  CLUS_5            19              50
  CLUS_6             2              46
  CLUS_7             5              38
  CLUS_8             2              26
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED        2      3      1      6
  MACF1 WILD-TYPE     31     28     26     13
D420V11, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED        7      1      3      1
  MACF1 WILD-TYPE     47      9     21     21
D420V12, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(421) Variable = IL1RAPL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RAPL1 MUTATED        3      1      0      3
  IL1RAPL1 WILD-TYPE     43     57     64     40
D421V1, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IL1RAPL1 MUTATED        3      2      2
  IL1RAPL1 WILD-TYPE     48     81     75
D421V2, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RAPL1 MUTATED       18      5      3      2
  IL1RAPL1 WILD-TYPE    160    178     98     18
D421V3, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1               18                160
  CLUS_2                5                178
  CLUS_3                3                 98
  CLUS_4                2                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IL1RAPL1 MUTATED        6      5     10
  IL1RAPL1 WILD-TYPE     81     75     90
D421V4, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                6                 81
  CLUS_2                5                 75
  CLUS_3               10                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IL1RAPL1 MUTATED        1      8     12
  IL1RAPL1 WILD-TYPE     88    152    126
D421V5, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                8                152
  CLUS_3               12                126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IL1RAPL1 MUTATED       14      7      0
  IL1RAPL1 WILD-TYPE    168    126     72
D421V6, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1               14                168
  CLUS_2                7                126
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RAPL1 MUTATED        7      6      8      7
  IL1RAPL1 WILD-TYPE    105     90     84    179
D421V7, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                7                105
  CLUS_2                6                 90
  CLUS_3                8                 84
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL1RAPL1 MUTATED        8      2      6      2      4      2      4
  IL1RAPL1 WILD-TYPE     52     48     43     38     59    123     95
D421V8, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                8                 52
  CLUS_2                2                 48
  CLUS_3                6                 43
  CLUS_4                2                 38
  CLUS_5                4                 59
  CLUS_6                2                123
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RAPL1 MUTATED       15      3      2      8
  IL1RAPL1 WILD-TYPE    115     75     66    188
D421V9, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1               15                115
  CLUS_2                3                 75
  CLUS_3                2                 66
  CLUS_4                8                188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL1RAPL1 MUTATED        3      4      3      4      8      2      3      1
  IL1RAPL1 WILD-TYPE     37     58     25     76     61     46     40     27
                    vv
clus                 CLUS_9
  IL1RAPL1 MUTATED        0
  IL1RAPL1 WILD-TYPE     74
D421V10, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                4                 58
  CLUS_3                3                 25
  CLUS_4                4                 76
  CLUS_5                8                 61
  CLUS_6                2                 46
  CLUS_7                3                 40
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RAPL1 MUTATED        1      1      1      5
  IL1RAPL1 WILD-TYPE     32     30     26     14
D421V11, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                5                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RAPL1 MUTATED        4      0      3      1
  IL1RAPL1 WILD-TYPE     50     10     21     21
D421V12, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                3                 21
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(422) Variable = WDR78 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR78 MUTATED        3      0      0      2
  WDR78 WILD-TYPE     43     58     64     41
D422V1, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR78 MUTATED        3      0      2
  WDR78 WILD-TYPE     48     83     75
D422V2, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR78 MUTATED       11      2      3      0
  WDR78 WILD-TYPE    167    181     98     20
D422V3, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR78 MUTATED        6      3      2
  WDR78 WILD-TYPE     81     77     98
D422V4, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR78 MUTATED        1      5      8
  WDR78 WILD-TYPE     88    155    130
D422V5, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR78 MUTATED        6      5      3
  WDR78 WILD-TYPE    176    128     69
D422V6, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR78 MUTATED        3      4      5      4
  WDR78 WILD-TYPE    109     92     87    182
D422V7, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR78 MUTATED        4      3      2      1      2      0      4
  WDR78 WILD-TYPE     56     47     47     39     61    125     95
D422V8, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR78 MUTATED        7      2      0      7
  WDR78 WILD-TYPE    123     76     68    189
D422V9, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR78 MUTATED        3      2      2      3      3      0      0      1
  WDR78 WILD-TYPE     37     60     26     77     66     48     43     27
                 vv
clus              CLUS_9
  WDR78 MUTATED        2
  WDR78 WILD-TYPE     72
D422V10, multiclass
        clus
vv       WDR78 MUTATED WDR78 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR78 MUTATED        0      0      0      2
  WDR78 WILD-TYPE     33     31     27     17
D422V11, multiclass
[1] "Remove cluster labels:" "WDR78 MUTATED"         
clus
  WDR78 MUTATED WDR78 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR78 MUTATED        1      0      1      0
  WDR78 WILD-TYPE     53     10     23     22
D422V12, multiclass
[1] "Remove cluster labels:" "WDR78 MUTATED"         
clus
  WDR78 MUTATED WDR78 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" "WDR78 WILD-TYPE" 

Clustering(423) Variable = TRIM13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM13 MUTATED        2      0      1      1
  TRIM13 WILD-TYPE     44     58     63     42
D423V1, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM13 MUTATED        2      0      2
  TRIM13 WILD-TYPE     49     83     75
D423V2, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM13 MUTATED        4      1      3      0
  TRIM13 WILD-TYPE    174    182     98     20
D423V3, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM13 MUTATED        1      1      2
  TRIM13 WILD-TYPE     86     79     98
D423V4, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM13 MUTATED        0      4      1
  TRIM13 WILD-TYPE     89    156    137
D423V5, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM13 MUTATED        2      3      0
  TRIM13 WILD-TYPE    180    130     72
D423V6, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM13 MUTATED        1      3      0      4
  TRIM13 WILD-TYPE    111     93     92    182
D423V7, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              0               92
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM13 MUTATED        1      4      0      0      0      1      2
  TRIM13 WILD-TYPE     59     46     49     40     63    124     97
D423V8, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM13 MUTATED        4      0      0      4
  TRIM13 WILD-TYPE    126     78     68    192
D423V9, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM13 MUTATED        0      0      2      1      3      0      1      0
  TRIM13 WILD-TYPE     40     62     26     79     66     48     42     28
                  vv
clus               CLUS_9
  TRIM13 MUTATED        1
  TRIM13 WILD-TYPE     73
D423V10, multiclass
        clus
vv       TRIM13 MUTATED TRIM13 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM13 MUTATED        0      0      0      0
  TRIM13 WILD-TYPE     33     31     27     19
D423V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM13 MUTATED        0      0      0      0
  TRIM13 WILD-TYPE     54     10     24     22
D423V12, multiclass

Clustering(424) Variable = OR1I1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1I1 MUTATED        0      0      0      2
  OR1I1 WILD-TYPE     46     58     64     41
D424V1, multiclass
[1] "Remove cluster labels:" "OR1I1 MUTATED"         
clus
  OR1I1 MUTATED OR1I1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AY-4071 
"OR1I1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1I1 MUTATED        1      0      1
  OR1I1 WILD-TYPE     50     83     76
D424V2, multiclass
[1] "Remove cluster labels:" "OR1I1 MUTATED"         
clus
  OR1I1 MUTATED OR1I1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" "OR1I1 WILD-TYPE" 
     TCGA-AY-4071 
"OR1I1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1I1 MUTATED        7      3      1      0
  OR1I1 WILD-TYPE    171    180    100     20
D424V3, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1I1 MUTATED        6      0      3
  OR1I1 WILD-TYPE     81     80     97
D424V4, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1I1 MUTATED        3      3      4
  OR1I1 WILD-TYPE     86    157    134
D424V5, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1I1 MUTATED        8      1      1
  OR1I1 WILD-TYPE    174    132     71
D424V6, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1I1 MUTATED        2      2      5      2
  OR1I1 WILD-TYPE    110     94     87    184
D424V7, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR1I1 MUTATED        2      1      4      1      2      0      1
  OR1I1 WILD-TYPE     58     49     45     39     61    125     98
D424V8, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1I1 MUTATED        5      4      0      2
  OR1I1 WILD-TYPE    125     74     68    194
D424V9, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR1I1 MUTATED        1      5      2      0      2      0      1      0
  OR1I1 WILD-TYPE     39     57     26     80     67     48     42     28
                 vv
clus              CLUS_9
  OR1I1 MUTATED        0
  OR1I1 WILD-TYPE     74
D424V10, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1I1 MUTATED        1      1      0      1
  OR1I1 WILD-TYPE     32     30     27     18
D424V11, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1I1 MUTATED        3      0      0      0
  OR1I1 WILD-TYPE     51     10     24     22
D424V12, multiclass
        clus
vv       OR1I1 MUTATED OR1I1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(425) Variable = ACOT9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACOT9 MUTATED        0      0      0      2
  ACOT9 WILD-TYPE     46     58     64     41
D425V1, multiclass
[1] "Remove cluster labels:" "ACOT9 MUTATED"         
clus
  ACOT9 MUTATED ACOT9 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AY-4071 
"ACOT9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACOT9 MUTATED        1      0      1
  ACOT9 WILD-TYPE     50     83     76
D425V2, multiclass
[1] "Remove cluster labels:" "ACOT9 MUTATED"         
clus
  ACOT9 MUTATED ACOT9 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" "ACOT9 WILD-TYPE" 
     TCGA-AY-4071 
"ACOT9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACOT9 MUTATED        3      1      1      0
  ACOT9 WILD-TYPE    175    182    100     20
D425V3, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACOT9 MUTATED        1      1      1
  ACOT9 WILD-TYPE     86     79     99
D425V4, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACOT9 MUTATED        1      2      0
  ACOT9 WILD-TYPE     88    158    138
D425V5, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             0             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACOT9 MUTATED        0      1      2
  ACOT9 WILD-TYPE    182    132     70
D425V6, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             0             182
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACOT9 MUTATED        1      1      1      2
  ACOT9 WILD-TYPE    111     95     91    184
D425V7, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACOT9 MUTATED        1      0      1      1      0      0      2
  ACOT9 WILD-TYPE     59     50     48     39     63    125     97
D425V8, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACOT9 MUTATED        3      0      0      2
  ACOT9 WILD-TYPE    127     78     68    194
D425V9, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACOT9 MUTATED        2      0      1      1      1      0      0      0
  ACOT9 WILD-TYPE     38     62     27     79     68     48     43     28
                 vv
clus              CLUS_9
  ACOT9 MUTATED        0
  ACOT9 WILD-TYPE     74
D425V10, multiclass
        clus
vv       ACOT9 MUTATED ACOT9 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACOT9 MUTATED        0      0      0      0
  ACOT9 WILD-TYPE     33     31     27     19
D425V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACOT9 MUTATED        0      0      0      0
  ACOT9 WILD-TYPE     54     10     24     22
D425V12, multiclass

Clustering(426) Variable = GPX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX6 MUTATED        1      0      0      2
  GPX6 WILD-TYPE     45     58     64     41
D426V1, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX6 MUTATED        1      1      1
  GPX6 WILD-TYPE     50     82     76
D426V2, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX6 MUTATED        6      2      2      0
  GPX6 WILD-TYPE    172    181     99     20
D426V3, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX6 MUTATED        2      3      2
  GPX6 WILD-TYPE     85     77     98
D426V4, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3             77
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX6 MUTATED        1      5      3
  GPX6 WILD-TYPE     88    155    135
D426V5, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX6 MUTATED        4      5      0
  GPX6 WILD-TYPE    178    128     72
D426V6, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX6 MUTATED        3      1      2      4
  GPX6 WILD-TYPE    109     95     90    182
D426V7, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPX6 MUTATED        1      1      2      1      1      0      4
  GPX6 WILD-TYPE     59     49     47     39     62    125     95
D426V8, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX6 MUTATED        2      2      1      5
  GPX6 WILD-TYPE    128     76     67    191
D426V9, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GPX6 MUTATED        0      2      3      0      2      1      1      0      1
  GPX6 WILD-TYPE     40     60     25     80     67     47     42     28     73
D426V10, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX6 MUTATED        0      2      0      1
  GPX6 WILD-TYPE     33     29     27     18
D426V11, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX6 MUTATED        2      1      0      0
  GPX6 WILD-TYPE     52      9     24     22
D426V12, multiclass
        clus
vv       GPX6 MUTATED GPX6 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(427) Variable = KIAA1797 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        0      1      0      5
  KIAA1797 WILD-TYPE     46     57     64     38
D427V1, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                0                 46
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                5                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1797 MUTATED        3      1      2
  KIAA1797 WILD-TYPE     48     82     75
D427V2, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED       18      5      1      0
  KIAA1797 WILD-TYPE    160    178    100     20
D427V3, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1               18                160
  CLUS_2                5                178
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1797 MUTATED        7      2      9
  KIAA1797 WILD-TYPE     80     78     91
D427V4, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                2                 78
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1797 MUTATED        3      8     11
  KIAA1797 WILD-TYPE     86    152    127
D427V5, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                8                152
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1797 MUTATED       11      7      4
  KIAA1797 WILD-TYPE    171    126     68
D427V6, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1               11                171
  CLUS_2                7                126
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        3      9      7      5
  KIAA1797 WILD-TYPE    109     87     85    181
D427V7, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                9                 87
  CLUS_3                7                 85
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1797 MUTATED        2      6      8      1      2      1      4
  KIAA1797 WILD-TYPE     58     44     41     39     61    124     95
D427V8, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                6                 44
  CLUS_3                8                 41
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED       10      4      2      6
  KIAA1797 WILD-TYPE    120     74     66    190
D427V9, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1               10                120
  CLUS_2                4                 74
  CLUS_3                2                 66
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1797 MUTATED        5      3      4      0      6      0      2      1
  KIAA1797 WILD-TYPE     35     59     24     80     63     48     41     27
                    vv
clus                 CLUS_9
  KIAA1797 MUTATED        1
  KIAA1797 WILD-TYPE     73
D427V10, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                3                 59
  CLUS_3                4                 24
  CLUS_4                0                 80
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                1                 27
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        2      0      0      3
  KIAA1797 WILD-TYPE     31     31     27     16
D427V11, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        2      0      2      1
  KIAA1797 WILD-TYPE     52     10     22     21
D427V12, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(428) Variable = ODZ1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODZ1 MUTATED        8      4      3      5
  ODZ1 WILD-TYPE     38     54     61     38
D428V1, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            8             38
  CLUS_2            4             54
  CLUS_3            3             61
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODZ1 MUTATED        9      6      5
  ODZ1 WILD-TYPE     42     77     72
D428V2, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            9             42
  CLUS_2            6             77
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODZ1 MUTATED       40     17     16      2
  ODZ1 WILD-TYPE    138    166     85     18
D428V3, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           40            138
  CLUS_2           17            166
  CLUS_3           16             85
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODZ1 MUTATED       16     12     27
  ODZ1 WILD-TYPE     71     68     73
D428V4, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           16             71
  CLUS_2           12             68
  CLUS_3           27             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODZ1 MUTATED       13     24     27
  ODZ1 WILD-TYPE     76    136    111
D428V5, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           13             76
  CLUS_2           24            136
  CLUS_3           27            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODZ1 MUTATED       38     14     12
  ODZ1 WILD-TYPE    144    119     60
D428V6, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           38            144
  CLUS_2           14            119
  CLUS_3           12             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODZ1 MUTATED       14     22     19     21
  ODZ1 WILD-TYPE     98     74     73    165
D428V7, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           14             98
  CLUS_2           22             74
  CLUS_3           19             73
  CLUS_4           21            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ODZ1 MUTATED       16     11     16      6      6      7     14
  ODZ1 WILD-TYPE     44     39     33     34     57    118     85
D428V8, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           16             44
  CLUS_2           11             39
  CLUS_3           16             33
  CLUS_4            6             34
  CLUS_5            6             57
  CLUS_6            7            118
  CLUS_7           14             85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODZ1 MUTATED       31     10      8     28
  ODZ1 WILD-TYPE     99     68     60    168
D428V9, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           31             99
  CLUS_2           10             68
  CLUS_3            8             60
  CLUS_4           28            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ODZ1 MUTATED       10      8      5     12     22      3      7      4      6
  ODZ1 WILD-TYPE     30     54     23     68     47     45     36     24     68
D428V10, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           10             30
  CLUS_2            8             54
  CLUS_3            5             23
  CLUS_4           12             68
  CLUS_5           22             47
  CLUS_6            3             45
  CLUS_7            7             36
  CLUS_8            4             24
  CLUS_9            6             68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODZ1 MUTATED        7      4      3      5
  ODZ1 WILD-TYPE     26     27     24     14
D428V11, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1            7             26
  CLUS_2            4             27
  CLUS_3            3             24
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODZ1 MUTATED       10      0      6      3
  ODZ1 WILD-TYPE     44     10     18     19
D428V12, multiclass
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  CLUS_1           10             44
  CLUS_2            0             10
  CLUS_3            6             18
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(429) Variable = KPNA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KPNA5 MUTATED        0      1      1      1
  KPNA5 WILD-TYPE     46     57     63     42
D429V1, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KPNA5 MUTATED        1      1      1
  KPNA5 WILD-TYPE     50     82     76
D429V2, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KPNA5 MUTATED        5      6      0      0
  KPNA5 WILD-TYPE    173    177    101     20
D429V3, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             6             177
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KPNA5 MUTATED        1      4      3
  KPNA5 WILD-TYPE     86     76     97
D429V4, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             4              76
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KPNA5 MUTATED        1      5      3
  KPNA5 WILD-TYPE     88    155    135
D429V5, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KPNA5 MUTATED        2      5      2
  KPNA5 WILD-TYPE    180    128     70
D429V6, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KPNA5 MUTATED        5      2      2      2
  KPNA5 WILD-TYPE    107     94     90    184
D429V7, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KPNA5 MUTATED        2      1      3      2      0      2      1
  KPNA5 WILD-TYPE     58     49     46     38     63    123     98
D429V8, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KPNA5 MUTATED        3      2      3      2
  KPNA5 WILD-TYPE    127     76     65    194
D429V9, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             3              65
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KPNA5 MUTATED        1      1      0      0      3      1      3      1
  KPNA5 WILD-TYPE     39     61     28     80     66     47     40     27
                 vv
clus              CLUS_9
  KPNA5 MUTATED        0
  KPNA5 WILD-TYPE     74
D429V10, multiclass
        clus
vv       KPNA5 MUTATED KPNA5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KPNA5 MUTATED        0      0      0      0
  KPNA5 WILD-TYPE     33     31     27     19
D429V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KPNA5 MUTATED        0      0      0      0
  KPNA5 WILD-TYPE     54     10     24     22
D429V12, multiclass

Clustering(430) Variable = DMRTB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMRTB1 MUTATED        0      0      1      0
  DMRTB1 WILD-TYPE     46     58     63     43
D430V1, multiclass
[1] "Remove cluster labels:" "DMRTB1 MUTATED"        
clus
  DMRTB1 MUTATED DMRTB1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DMRTB1 MUTATED        0      1      0
  DMRTB1 WILD-TYPE     51     82     77
D430V2, multiclass
[1] "Remove cluster labels:" "DMRTB1 MUTATED"        
clus
  DMRTB1 MUTATED DMRTB1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMRTB1 MUTATED        4      2      0      0
  DMRTB1 WILD-TYPE    174    181    101     20
D430V3, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DMRTB1 MUTATED        1      1      3
  DMRTB1 WILD-TYPE     86     79     97
D430V4, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DMRTB1 MUTATED        2      0      3
  DMRTB1 WILD-TYPE     87    160    135
D430V5, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              0              160
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DMRTB1 MUTATED        3      0      2
  DMRTB1 WILD-TYPE    179    133     70
D430V6, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              0              133
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMRTB1 MUTATED        0      2      2      2
  DMRTB1 WILD-TYPE    112     94     90    184
D430V7, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DMRTB1 MUTATED        0      0      3      1      0      2      0
  DMRTB1 WILD-TYPE     60     50     46     39     63    123     99
D430V8, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMRTB1 MUTATED        2      1      0      3
  DMRTB1 WILD-TYPE    128     77     68    193
D430V9, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DMRTB1 MUTATED        1      2      0      0      1      0      0      0
  DMRTB1 WILD-TYPE     39     60     28     80     68     48     43     28
                  vv
clus               CLUS_9
  DMRTB1 MUTATED        2
  DMRTB1 WILD-TYPE     72
D430V10, multiclass
        clus
vv       DMRTB1 MUTATED DMRTB1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMRTB1 MUTATED        0      0      0      1
  DMRTB1 WILD-TYPE     33     31     27     18
D430V11, multiclass
[1] "Remove cluster labels:" "DMRTB1 MUTATED"        
clus
  DMRTB1 MUTATED DMRTB1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-G5-6641 
"DMRTB1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMRTB1 MUTATED        1      0      0      0
  DMRTB1 WILD-TYPE     53     10     24     22
D430V12, multiclass
[1] "Remove cluster labels:" "DMRTB1 MUTATED"        
clus
  DMRTB1 MUTATED DMRTB1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" "DMRTB1 WILD-TYPE" 
      TCGA-G5-6641 
"DMRTB1 WILD-TYPE" 

Clustering(431) Variable = NUP160 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP160 MUTATED        1      0      1      1
  NUP160 WILD-TYPE     45     58     63     42
D431V1, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP160 MUTATED        2      0      1
  NUP160 WILD-TYPE     49     83     76
D431V2, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP160 MUTATED        8      1      1      0
  NUP160 WILD-TYPE    170    182    100     20
D431V3, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP160 MUTATED        3      2      2
  NUP160 WILD-TYPE     84     78     98
D431V4, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP160 MUTATED        3      4      2
  NUP160 WILD-TYPE     86    156    136
D431V5, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP160 MUTATED        4      4      1
  NUP160 WILD-TYPE    178    129     71
D431V6, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP160 MUTATED        1      4      2      4
  NUP160 WILD-TYPE    111     92     90    182
D431V7, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP160 MUTATED        1      1      4      0      1      0      4
  NUP160 WILD-TYPE     59     49     45     40     62    125     95
D431V8, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP160 MUTATED        6      1      0      4
  NUP160 WILD-TYPE    124     77     68    192
D431V9, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP160 MUTATED        2      1      0      1      6      0      0      0
  NUP160 WILD-TYPE     38     61     28     79     63     48     43     28
                  vv
clus               CLUS_9
  NUP160 MUTATED        1
  NUP160 WILD-TYPE     73
D431V10, multiclass
        clus
vv       NUP160 MUTATED NUP160 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP160 MUTATED        0      0      0      2
  NUP160 WILD-TYPE     33     31     27     17
D431V11, multiclass
[1] "Remove cluster labels:" "NUP160 MUTATED"        
clus
  NUP160 MUTATED NUP160 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP160 MUTATED        0      0      2      0
  NUP160 WILD-TYPE     54     10     22     22
D431V12, multiclass
[1] "Remove cluster labels:" "NUP160 MUTATED"        
clus
  NUP160 MUTATED NUP160 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" "NUP160 WILD-TYPE" 

Clustering(432) Variable = GRIA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIA4 MUTATED        4      1      3      2
  GRIA4 WILD-TYPE     42     57     61     41
D432V1, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             3              61
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIA4 MUTATED        3      4      3
  GRIA4 WILD-TYPE     48     79     74
D432V2, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             4              79
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIA4 MUTATED       15      8     11      2
  GRIA4 WILD-TYPE    163    175     90     18
D432V3, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             8             175
  CLUS_3            11              90
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIA4 MUTATED       10     11      4
  GRIA4 WILD-TYPE     77     69     96
D432V4, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1            10              77
  CLUS_2            11              69
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIA4 MUTATED        6     10     16
  GRIA4 WILD-TYPE     83    150    122
D432V5, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             6              83
  CLUS_2            10             150
  CLUS_3            16             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIA4 MUTATED       18     10      4
  GRIA4 WILD-TYPE    164    123     68
D432V6, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1            18             164
  CLUS_2            10             123
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIA4 MUTATED       12      8      6     11
  GRIA4 WILD-TYPE    100     88     86    175
D432V7, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1            12             100
  CLUS_2             8              88
  CLUS_3             6              86
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRIA4 MUTATED        7      2      5      1     11      5      6
  GRIA4 WILD-TYPE     53     48     44     39     52    120     93
D432V8, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5            11              52
  CLUS_6             5             120
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIA4 MUTATED       10      8      5     14
  GRIA4 WILD-TYPE    120     70     63    182
D432V9, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             8              70
  CLUS_3             5              63
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GRIA4 MUTATED        2      5      2      6      6      4      5      1
  GRIA4 WILD-TYPE     38     57     26     74     63     44     38     27
                 vv
clus              CLUS_9
  GRIA4 MUTATED        6
  GRIA4 WILD-TYPE     68
D432V10, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             6              74
  CLUS_5             6              63
  CLUS_6             4              44
  CLUS_7             5              38
  CLUS_8             1              27
  CLUS_9             6              68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIA4 MUTATED        3      4      1      0
  GRIA4 WILD-TYPE     30     27     26     19
D432V11, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              27
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIA4 MUTATED        3      0      1      4
  GRIA4 WILD-TYPE     51     10     23     18
D432V12, multiclass
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             4              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(433) Variable = FBLN5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLN5 MUTATED        0      0      0      1
  FBLN5 WILD-TYPE     46     58     64     42
D433V1, multiclass
[1] "Remove cluster labels:" "FBLN5 MUTATED"         
clus
  FBLN5 MUTATED FBLN5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBLN5 MUTATED        0      0      1
  FBLN5 WILD-TYPE     51     83     76
D433V2, multiclass
[1] "Remove cluster labels:" "FBLN5 MUTATED"         
clus
  FBLN5 MUTATED FBLN5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FBLN5 WILD-TYPE" "FBLN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLN5 MUTATED        3      4      3      0
  FBLN5 WILD-TYPE    175    179     98     20
D433V3, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBLN5 MUTATED        3      3      3
  FBLN5 WILD-TYPE     84     77     97
D433V4, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBLN5 MUTATED        0      5      4
  FBLN5 WILD-TYPE     89    155    134
D433V5, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBLN5 MUTATED        2      6      1
  FBLN5 WILD-TYPE    180    127     71
D433V6, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLN5 MUTATED        3      4      2      1
  FBLN5 WILD-TYPE    109     92     90    185
D433V7, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBLN5 MUTATED        3      3      2      0      2      0      0
  FBLN5 WILD-TYPE     57     47     47     40     61    125     99
D433V8, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLN5 MUTATED        5      1      3      1
  FBLN5 WILD-TYPE    125     77     65    195
D433V9, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBLN5 MUTATED        0      2      2      0      3      1      2      0
  FBLN5 WILD-TYPE     40     60     26     80     66     47     41     28
                 vv
clus              CLUS_9
  FBLN5 MUTATED        0
  FBLN5 WILD-TYPE     74
D433V10, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLN5 MUTATED        1      1      0      1
  FBLN5 WILD-TYPE     32     30     27     18
D433V11, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLN5 MUTATED        1      0      1      1
  FBLN5 WILD-TYPE     53     10     23     21
D433V12, multiclass
        clus
vv       FBLN5 MUTATED FBLN5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(434) Variable = FBXO34 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        1      0      0      2
  FBXO34 WILD-TYPE     45     58     64     41
D434V1, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        1      0      2
  FBXO34 WILD-TYPE     50     83     75
D434V2, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED       11      1      0      0
  FBXO34 WILD-TYPE    167    182    101     20
D434V3, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        3      1      5
  FBXO34 WILD-TYPE     84     79     95
D434V4, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        1      5      4
  FBXO34 WILD-TYPE     88    155    134
D434V5, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        2      8      0
  FBXO34 WILD-TYPE    180    125     72
D434V6, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              8              125
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        1      7      1      3
  FBXO34 WILD-TYPE    111     89     91    183
D434V7, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              7               89
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXO34 MUTATED        2      3      4      1      0      0      2
  FBXO34 WILD-TYPE     58     47     45     39     63    125     97
D434V8, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        5      1      2      4
  FBXO34 WILD-TYPE    125     77     66    192
D434V9, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXO34 MUTATED        2      1      1      0      4      0      2      1
  FBXO34 WILD-TYPE     38     61     27     80     65     48     41     27
                  vv
clus               CLUS_9
  FBXO34 MUTATED        1
  FBXO34 WILD-TYPE     73
D434V10, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        0      0      1      2
  FBXO34 WILD-TYPE     33     31     26     17
D434V11, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        1      0      2      0
  FBXO34 WILD-TYPE     53     10     22     22
D434V12, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(435) Variable = BRCA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        5      0      0      2
  BRCA1 WILD-TYPE     41     58     64     41
D435V1, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED        4      2      1
  BRCA1 WILD-TYPE     47     81     76
D435V2, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED       19      4      5      1
  BRCA1 WILD-TYPE    159    179     96     19
D435V3, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             4             179
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED        7      4     12
  BRCA1 WILD-TYPE     80     76     88
D435V4, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             4              76
  CLUS_3            12              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED        4     11      8
  BRCA1 WILD-TYPE     85    149    130
D435V5, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            11             149
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED       10     10      3
  BRCA1 WILD-TYPE    172    123     69
D435V6, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1            10             172
  CLUS_2            10             123
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        5     10      6      8
  BRCA1 WILD-TYPE    107     86     86    178
D435V7, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2            10              86
  CLUS_3             6              86
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRCA1 MUTATED        6      3      8      2      3      1      6
  BRCA1 WILD-TYPE     54     47     41     38     60    124     93
D435V8, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED       14      4      2      8
  BRCA1 WILD-TYPE    116     74     66    188
D435V9, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1            14             116
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BRCA1 MUTATED        1      2      2      8     10      1      3      0
  BRCA1 WILD-TYPE     39     60     26     72     59     47     40     28
                 vv
clus              CLUS_9
  BRCA1 MUTATED        1
  BRCA1 WILD-TYPE     73
D435V10, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             8              72
  CLUS_5            10              59
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        1      0      3      3
  BRCA1 WILD-TYPE     32     31     24     16
D435V11, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             3              24
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        2      0      3      2
  BRCA1 WILD-TYPE     52     10     21     20
D435V12, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(436) Variable = INSRR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSRR MUTATED        3      1      0      3
  INSRR WILD-TYPE     43     57     64     40
D436V1, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSRR MUTATED        5      0      2
  INSRR WILD-TYPE     46     83     75
D436V2, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSRR MUTATED       21      6      4      1
  INSRR WILD-TYPE    157    177     97     19
D436V3, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1            21             157
  CLUS_2             6             177
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSRR MUTATED       11      4      9
  INSRR WILD-TYPE     76     76     91
D436V4, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1            11              76
  CLUS_2             4              76
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSRR MUTATED        3      5     14
  INSRR WILD-TYPE     86    155    124
D436V5, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSRR MUTATED       16      6      0
  INSRR WILD-TYPE    166    127     72
D436V6, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1            16             166
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSRR MUTATED        8      6     10      8
  INSRR WILD-TYPE    104     90     82    178
D436V7, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             8             104
  CLUS_2             6              90
  CLUS_3            10              82
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INSRR MUTATED        9      3      8      2      2      0      8
  INSRR WILD-TYPE     51     47     41     38     61    125     91
D436V8, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             9              51
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSRR MUTATED       14      5      2     11
  INSRR WILD-TYPE    116     73     66    185
D436V9, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1            14             116
  CLUS_2             5              73
  CLUS_3             2              66
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INSRR MUTATED        1      6      3      4     11      3      3      0
  INSRR WILD-TYPE     39     56     25     76     58     45     40     28
                 vv
clus              CLUS_9
  INSRR MUTATED        1
  INSRR WILD-TYPE     73
D436V10, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5            11              58
  CLUS_6             3              45
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSRR MUTATED        2      0      3      6
  INSRR WILD-TYPE     31     31     24     13
D436V11, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             3              24
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSRR MUTATED        6      0      3      2
  INSRR WILD-TYPE     48     10     21     20
D436V12, multiclass
        clus
vv       INSRR MUTATED INSRR WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(437) Variable = FBN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN2 MUTATED        8      0      2      7
  FBN2 WILD-TYPE     38     58     62     36
D437V1, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            8             38
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN2 MUTATED       11      4      2
  FBN2 WILD-TYPE     40     79     75
D437V2, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           11             40
  CLUS_2            4             79
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN2 MUTATED       29     10      5      2
  FBN2 WILD-TYPE    149    173     96     18
D437V3, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           29            149
  CLUS_2           10            173
  CLUS_3            5             96
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN2 MUTATED       12      5     11
  FBN2 WILD-TYPE     75     75     89
D437V4, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           12             75
  CLUS_2            5             75
  CLUS_3           11             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN2 MUTATED        6     12     20
  FBN2 WILD-TYPE     83    148    118
D437V5, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            6             83
  CLUS_2           12            148
  CLUS_3           20            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN2 MUTATED       21     13      4
  FBN2 WILD-TYPE    161    120     68
D437V6, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           21            161
  CLUS_2           13            120
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN2 MUTATED        6      9     12     19
  FBN2 WILD-TYPE    106     87     80    167
D437V7, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            9             87
  CLUS_3           12             80
  CLUS_4           19            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBN2 MUTATED        3      5     10      3      6      2     17
  FBN2 WILD-TYPE     57     45     39     37     57    123     82
D437V8, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            5             45
  CLUS_3           10             39
  CLUS_4            3             37
  CLUS_5            6             57
  CLUS_6            2            123
  CLUS_7           17             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN2 MUTATED       12      9      3     20
  FBN2 WILD-TYPE    118     69     65    176
D437V9, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           12            118
  CLUS_2            9             69
  CLUS_3            3             65
  CLUS_4           20            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FBN2 MUTATED        6      9      2      4     14      5      0      0      4
  FBN2 WILD-TYPE     34     53     26     76     55     43     43     28     70
D437V10, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            9             53
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5           14             55
  CLUS_6            5             43
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN2 MUTATED        4      3      2      5
  FBN2 WILD-TYPE     29     28     25     14
D437V11, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN2 MUTATED        9      1      2      2
  FBN2 WILD-TYPE     45      9     22     20
D437V12, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            9             45
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(438) Variable = STAB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB2 MUTATED        7      0      1      5
  STAB2 WILD-TYPE     39     58     63     38
D438V1, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB2 MUTATED        8      2      3
  STAB2 WILD-TYPE     43     81     74
D438V2, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB2 MUTATED       26      4      4      2
  STAB2 WILD-TYPE    152    179     97     18
D438V3, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1            26             152
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB2 MUTATED        8      5     10
  STAB2 WILD-TYPE     79     75     90
D438V4, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             5              75
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB2 MUTATED        7      9     13
  STAB2 WILD-TYPE     82    151    125
D438V5, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             7              82
  CLUS_2             9             151
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB2 MUTATED       13     10      6
  STAB2 WILD-TYPE    169    123     66
D438V6, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1            13             169
  CLUS_2            10             123
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB2 MUTATED        4     10      7     15
  STAB2 WILD-TYPE    108     86     85    171
D438V7, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2            10              86
  CLUS_3             7              85
  CLUS_4            15             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAB2 MUTATED        6      4      6      1      4      3     12
  STAB2 WILD-TYPE     54     46     43     39     59    122     87
D438V8, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             4              46
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             3             122
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB2 MUTATED       10      6      1     18
  STAB2 WILD-TYPE    120     72     67    178
D438V9, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4            18             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STAB2 MUTATED        2      5      4      4     11      3      1      1
  STAB2 WILD-TYPE     38     57     24     76     58     45     42     27
                 vv
clus              CLUS_9
  STAB2 MUTATED        4
  STAB2 WILD-TYPE     70
D438V10, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             4              24
  CLUS_4             4              76
  CLUS_5            11              58
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB2 MUTATED        3      3      0      2
  STAB2 WILD-TYPE     30     28     27     17
D438V11, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB2 MUTATED        6      0      2      0
  STAB2 WILD-TYPE     48     10     22     22
D438V12, multiclass
        clus
vv       STAB2 MUTATED STAB2 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(439) Variable = ATP6V1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        2      0      0      0
  ATP6V1A WILD-TYPE     44     58     64     43
D439V1, multiclass
[1] "Remove cluster labels:" "ATP6V1A MUTATED"       
clus
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979        TCGA-AA-3980 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AY-4071 
"ATP6V1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1A MUTATED        2      0      0
  ATP6V1A WILD-TYPE     49     83     77
D439V2, multiclass
[1] "Remove cluster labels:" "ATP6V1A MUTATED"       
clus
  ATP6V1A MUTATED ATP6V1A WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979        TCGA-AA-3980 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" "ATP6V1A WILD-TYPE" 
       TCGA-AY-4071 
"ATP6V1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        4      3      3      1
  ATP6V1A WILD-TYPE    174    180     98     19
D439V3, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               4               174
  CLUS_2               3               180
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1A MUTATED        6      3      0
  ATP6V1A WILD-TYPE     81     77    100
D439V4, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               6                81
  CLUS_2               3                77
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1A MUTATED        0      4      4
  ATP6V1A WILD-TYPE     89    156    134
D439V5, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1A MUTATED        4      2      2
  ATP6V1A WILD-TYPE    178    131     70
D439V6, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               4               178
  CLUS_2               2               131
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        3      2      4      2
  ATP6V1A WILD-TYPE    109     94     88    184
D439V7, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               3               109
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP6V1A MUTATED        1      0      2      2      4      0      2
  ATP6V1A WILD-TYPE     59     50     47     38     59    125     97
D439V8, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               4                59
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        2      4      3      2
  ATP6V1A WILD-TYPE    128     74     65    194
D439V9, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               2               128
  CLUS_2               4                74
  CLUS_3               3                65
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP6V1A MUTATED        2      4      0      2      2      0      1      0
  ATP6V1A WILD-TYPE     38     58     28     78     67     48     42     28
                   vv
clus                CLUS_9
  ATP6V1A MUTATED        0
  ATP6V1A WILD-TYPE     74
D439V10, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               2                38
  CLUS_2               4                58
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        2      0      2      0
  ATP6V1A WILD-TYPE     31     31     25     19
D439V11, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               2                25
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1A MUTATED        2      0      2      0
  ATP6V1A WILD-TYPE     52     10     22     22
D439V12, multiclass
        clus
vv       ATP6V1A MUTATED ATP6V1A WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(440) Variable = DUSP19 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP19 MUTATED        0      0      0      2
  DUSP19 WILD-TYPE     46     58     64     41
D440V1, multiclass
[1] "Remove cluster labels:" "DUSP19 MUTATED"        
clus
  DUSP19 MUTATED DUSP19 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AY-4071 
"DUSP19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP19 MUTATED        1      0      1
  DUSP19 WILD-TYPE     50     83     76
D440V2, multiclass
[1] "Remove cluster labels:" "DUSP19 MUTATED"        
clus
  DUSP19 MUTATED DUSP19 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AY-4071 
"DUSP19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP19 MUTATED        8      2      2      0
  DUSP19 WILD-TYPE    170    181     99     20
D440V3, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP19 MUTATED        4      2      4
  DUSP19 WILD-TYPE     83     78     96
D440V4, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP19 MUTATED        0      6      6
  DUSP19 WILD-TYPE     89    154    132
D440V5, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP19 MUTATED        6      5      1
  DUSP19 WILD-TYPE    176    128     71
D440V6, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP19 MUTATED        1      4      4      3
  DUSP19 WILD-TYPE    111     92     88    183
D440V7, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DUSP19 MUTATED        3      2      2      1      2      1      1
  DUSP19 WILD-TYPE     57     48     47     39     61    124     98
D440V8, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP19 MUTATED        6      2      0      3
  DUSP19 WILD-TYPE    124     76     68    193
D440V9, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DUSP19 MUTATED        3      2      0      2      1      1      1      0
  DUSP19 WILD-TYPE     37     60     28     78     68     47     42     28
                  vv
clus               CLUS_9
  DUSP19 MUTATED        1
  DUSP19 WILD-TYPE     73
D440V10, multiclass
        clus
vv       DUSP19 MUTATED DUSP19 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP19 MUTATED        0      1      1      0
  DUSP19 WILD-TYPE     33     30     26     19
D440V11, multiclass
[1] "Remove cluster labels:" "DUSP19 MUTATED"        
clus
  DUSP19 MUTATED DUSP19 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP19 MUTATED        0      1      1      0
  DUSP19 WILD-TYPE     54      9     23     22
D440V12, multiclass
[1] "Remove cluster labels:" "DUSP19 MUTATED"        
clus
  DUSP19 MUTATED DUSP19 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" "DUSP19 WILD-TYPE" 

Clustering(441) Variable = MRPS5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        1      0      0      1
  MRPS5 WILD-TYPE     45     58     64     42
D441V1, multiclass
[1] "Remove cluster labels:" "MRPS5 MUTATED"         
clus
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AY-4071 
"MRPS5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        2      0      0
  MRPS5 WILD-TYPE     49     83     77
D441V2, multiclass
[1] "Remove cluster labels:" "MRPS5 MUTATED"         
clus
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AY-4071 
"MRPS5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED       10      1      0      1
  MRPS5 WILD-TYPE    168    182    101     19
D441V3, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        3      4      3
  MRPS5 WILD-TYPE     84     76     97
D441V4, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4              76
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        1      4      6
  MRPS5 WILD-TYPE     88    156    132
D441V5, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        6      5      0
  MRPS5 WILD-TYPE    176    128     72
D441V6, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        3      5      2      2
  MRPS5 WILD-TYPE    109     91     90    184
D441V7, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPS5 MUTATED        2      3      2      2      1      0      2
  MRPS5 WILD-TYPE     58     47     47     38     62    125     97
D441V8, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        9      0      0      2
  MRPS5 WILD-TYPE    121     78     68    194
D441V9, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRPS5 MUTATED        6      0      1      1      1      0      1      1
  MRPS5 WILD-TYPE     34     62     27     79     68     48     42     27
                 vv
clus              CLUS_9
  MRPS5 MUTATED        0
  MRPS5 WILD-TYPE     74
D441V10, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             6              34
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        0      1      0      1
  MRPS5 WILD-TYPE     33     30     27     18
D441V11, multiclass
[1] "Remove cluster labels:" "MRPS5 MUTATED"         
clus
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        1      0      1      0
  MRPS5 WILD-TYPE     53     10     23     22
D441V12, multiclass
[1] "Remove cluster labels:" "MRPS5 MUTATED"         
clus
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 

Clustering(442) Variable = UIMC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        0      1      0      1
  UIMC1 WILD-TYPE     46     57     64     42
D442V1, multiclass
[1] "Remove cluster labels:" "UIMC1 MUTATED"         
clus
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AY-4070 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AY-4071 
"UIMC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        0      1      1
  UIMC1 WILD-TYPE     51     82     76
D442V2, multiclass
[1] "Remove cluster labels:" "UIMC1 MUTATED"         
clus
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AY-4070 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AY-4071 
"UIMC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        5      2      2      0
  UIMC1 WILD-TYPE    173    181     99     20
D442V3, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        3      2      1
  UIMC1 WILD-TYPE     84     78     99
D442V4, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        2      1      4
  UIMC1 WILD-TYPE     87    159    134
D442V5, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UIMC1 MUTATED        5      2      0
  UIMC1 WILD-TYPE    177    131     72
D442V6, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        3      1      4      1
  UIMC1 WILD-TYPE    109     95     88    185
D442V7, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             4              88
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UIMC1 MUTATED        4      1      2      0      1      1      0
  UIMC1 WILD-TYPE     56     49     47     40     62    124     99
D442V8, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        3      1      1      3
  UIMC1 WILD-TYPE    127     77     67    193
D442V9, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UIMC1 MUTATED        0      2      0      3      1      0      1      1
  UIMC1 WILD-TYPE     40     60     28     77     68     48     42     27
                 vv
clus              CLUS_9
  UIMC1 MUTATED        0
  UIMC1 WILD-TYPE     74
D442V10, multiclass
        clus
vv       UIMC1 MUTATED UIMC1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        0      0      1      0
  UIMC1 WILD-TYPE     33     31     26     19
D442V11, multiclass
[1] "Remove cluster labels:" "UIMC1 MUTATED"         
clus
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G5-6641 
"UIMC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UIMC1 MUTATED        0      0      0      1
  UIMC1 WILD-TYPE     54     10     24     21
D442V12, multiclass
[1] "Remove cluster labels:" "UIMC1 MUTATED"         
clus
  UIMC1 MUTATED UIMC1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" "UIMC1 WILD-TYPE" 
     TCGA-G5-6641 
"UIMC1 WILD-TYPE" 

Clustering(443) Variable = LRP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP2 MUTATED       12      6      3      9
  LRP2 WILD-TYPE     34     52     61     34
D443V1, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           12             34
  CLUS_2            6             52
  CLUS_3            3             61
  CLUS_4            9             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP2 MUTATED       15     11      4
  LRP2 WILD-TYPE     36     72     73
D443V2, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           15             36
  CLUS_2           11             72
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP2 MUTATED       47     30     10      0
  LRP2 WILD-TYPE    131    153     91     20
D443V3, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           47            131
  CLUS_2           30            153
  CLUS_3           10             91
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP2 MUTATED       20      9     24
  LRP2 WILD-TYPE     67     71     76
D443V4, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           20             67
  CLUS_2            9             71
  CLUS_3           24             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP2 MUTATED        9     25     34
  LRP2 WILD-TYPE     80    135    104
D443V5, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1            9             80
  CLUS_2           25            135
  CLUS_3           34            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP2 MUTATED       33     24     11
  LRP2 WILD-TYPE    149    109     61
D443V6, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           33            149
  CLUS_2           24            109
  CLUS_3           11             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP2 MUTATED       18     20     20     29
  LRP2 WILD-TYPE     94     76     72    157
D443V7, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           18             94
  CLUS_2           20             76
  CLUS_3           20             72
  CLUS_4           29            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRP2 MUTATED       12      8     20      5      9     14     19
  LRP2 WILD-TYPE     48     42     29     35     54    111     80
D443V8, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           12             48
  CLUS_2            8             42
  CLUS_3           20             29
  CLUS_4            5             35
  CLUS_5            9             54
  CLUS_6           14            111
  CLUS_7           19             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP2 MUTATED       32     16      4     31
  LRP2 WILD-TYPE     98     62     64    165
D443V9, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           32             98
  CLUS_2           16             62
  CLUS_3            4             64
  CLUS_4           31            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LRP2 MUTATED        9     14      8     11     18      4      4      8      7
  LRP2 WILD-TYPE     31     48     20     69     51     44     39     20     67
D443V10, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1            9             31
  CLUS_2           14             48
  CLUS_3            8             20
  CLUS_4           11             69
  CLUS_5           18             51
  CLUS_6            4             44
  CLUS_7            4             39
  CLUS_8            8             20
  CLUS_9            7             67
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP2 MUTATED        6      5      3      7
  LRP2 WILD-TYPE     27     26     24     12
D443V11, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1            6             27
  CLUS_2            5             26
  CLUS_3            3             24
  CLUS_4            7             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP2 MUTATED       11      3      5      2
  LRP2 WILD-TYPE     43      7     19     20
D443V12, multiclass
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  CLUS_1           11             43
  CLUS_2            3              7
  CLUS_3            5             19
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(444) Variable = FUT10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT10 MUTATED        1      0      0      1
  FUT10 WILD-TYPE     45     58     64     42
D444V1, multiclass
[1] "Remove cluster labels:" "FUT10 MUTATED"         
clus
  FUT10 MUTATED FUT10 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AY-4071 
"FUT10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUT10 MUTATED        0      1      1
  FUT10 WILD-TYPE     51     82     76
D444V2, multiclass
[1] "Remove cluster labels:" "FUT10 MUTATED"         
clus
  FUT10 MUTATED FUT10 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AY-4071 
"FUT10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT10 MUTATED        4      2      1      0
  FUT10 WILD-TYPE    174    181    100     20
D444V3, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUT10 MUTATED        2      1      2
  FUT10 WILD-TYPE     85     79     98
D444V4, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUT10 MUTATED        2      1      2
  FUT10 WILD-TYPE     87    159    136
D444V5, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUT10 MUTATED        3      1      1
  FUT10 WILD-TYPE    179    132     71
D444V6, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT10 MUTATED        2      3      0      2
  FUT10 WILD-TYPE    110     93     92    184
D444V7, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FUT10 MUTATED        1      1      2      1      1      1      0
  FUT10 WILD-TYPE     59     49     47     39     62    124     99
D444V8, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT10 MUTATED        3      2      0      2
  FUT10 WILD-TYPE    127     76     68    194
D444V9, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FUT10 MUTATED        0      2      0      1      2      0      2      0
  FUT10 WILD-TYPE     40     60     28     79     67     48     41     28
                 vv
clus              CLUS_9
  FUT10 MUTATED        0
  FUT10 WILD-TYPE     74
D444V10, multiclass
        clus
vv       FUT10 MUTATED FUT10 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT10 MUTATED        1      1      0      0
  FUT10 WILD-TYPE     32     30     27     19
D444V11, multiclass
[1] "Remove cluster labels:" "FUT10 MUTATED"         
clus
  FUT10 MUTATED FUT10 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUT10 MUTATED        2      0      0      0
  FUT10 WILD-TYPE     52     10     24     22
D444V12, multiclass
[1] "Remove cluster labels:" "FUT10 MUTATED"         
clus
  FUT10 MUTATED FUT10 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" "FUT10 WILD-TYPE" 

Clustering(445) Variable = GAB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        0      0      0      2
  GAB2 WILD-TYPE     46     58     64     41
D445V1, multiclass
[1] "Remove cluster labels:" "GAB2 MUTATED"          
clus
  GAB2 MUTATED GAB2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864     TCGA-AA-3866 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AY-4071 
"GAB2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        1      0      1
  GAB2 WILD-TYPE     50     83     76
D445V2, multiclass
[1] "Remove cluster labels:" "GAB2 MUTATED"          
clus
  GAB2 MUTATED GAB2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864     TCGA-AA-3866 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" "GAB2 WILD-TYPE" 
    TCGA-AY-4071 
"GAB2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        6      1      2      0
  GAB2 WILD-TYPE    172    182     99     20
D445V3, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        3      1      4
  GAB2 WILD-TYPE     84     79     96
D445V4, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        1      3      6
  GAB2 WILD-TYPE     88    157    132
D445V5, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        8      2      0
  GAB2 WILD-TYPE    174    131     72
D445V6, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        2      4      2      2
  GAB2 WILD-TYPE    110     92     90    184
D445V7, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAB2 MUTATED        1      1      3      0      2      1      2
  GAB2 WILD-TYPE     59     49     46     40     61    124     97
D445V8, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        3      2      2      2
  GAB2 WILD-TYPE    127     76     66    194
D445V9, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GAB2 MUTATED        0      3      2      1      1      1      1      0      0
  GAB2 WILD-TYPE     40     59     26     79     68     47     42     28     74
D445V10, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        2      1      1      0
  GAB2 WILD-TYPE     31     30     26     19
D445V11, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        1      1      1      1
  GAB2 WILD-TYPE     53      9     23     21
D445V12, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(446) Variable = DSG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG1 MUTATED        3      0      0      4
  DSG1 WILD-TYPE     43     58     64     39
D446V1, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG1 MUTATED        4      1      2
  DSG1 WILD-TYPE     47     82     75
D446V2, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG1 MUTATED       14      1      5      1
  DSG1 WILD-TYPE    164    182     96     19
D446V3, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            1            182
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG1 MUTATED        6      3      4
  DSG1 WILD-TYPE     81     77     96
D446V4, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG1 MUTATED        0      7     12
  DSG1 WILD-TYPE     89    153    126
D446V5, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            7            153
  CLUS_3           12            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG1 MUTATED       11      8      0
  DSG1 WILD-TYPE    171    125     72
D446V6, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            8            125
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG1 MUTATED        2      4      6      9
  DSG1 WILD-TYPE    110     92     86    177
D446V7, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            6             86
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DSG1 MUTATED        3      2      3      3      2      1      7
  DSG1 WILD-TYPE     57     48     46     37     61    124     92
D446V8, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            3             37
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG1 MUTATED        7      2      2      9
  DSG1 WILD-TYPE    123     76     66    187
D446V9, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DSG1 MUTATED        3      3      2      1      5      0      2      1      3
  DSG1 WILD-TYPE     37     59     26     79     64     48     41     27     71
D446V10, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG1 MUTATED        0      0      1      2
  DSG1 WILD-TYPE     33     31     26     17
D446V11, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG1 MUTATED        2      0      1      0
  DSG1 WILD-TYPE     52     10     23     22
D446V12, multiclass
        clus
vv       DSG1 MUTATED DSG1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(447) Variable = DKK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DKK2 MUTATED        4      0      2      0
  DKK2 WILD-TYPE     42     58     62     43
D447V1, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DKK2 MUTATED        4      2      0
  DKK2 WILD-TYPE     47     81     77
D447V2, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DKK2 MUTATED       10     10      5      1
  DKK2 WILD-TYPE    168    173     96     19
D447V3, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1           10            168
  CLUS_2           10            173
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DKK2 MUTATED        8      7      5
  DKK2 WILD-TYPE     79     73     95
D447V4, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            7             73
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DKK2 MUTATED        6      5     13
  DKK2 WILD-TYPE     83    155    125
D447V5, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            6             83
  CLUS_2            5            155
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DKK2 MUTATED       14      5      5
  DKK2 WILD-TYPE    168    128     67
D447V6, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1           14            168
  CLUS_2            5            128
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DKK2 MUTATED        4      7      9      6
  DKK2 WILD-TYPE    108     89     83    180
D447V7, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            7             89
  CLUS_3            9             83
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DKK2 MUTATED        1      4      7      2      6      2      4
  DKK2 WILD-TYPE     59     46     42     38     57    123     95
D447V8, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            4             46
  CLUS_3            7             42
  CLUS_4            2             38
  CLUS_5            6             57
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DKK2 MUTATED        8      7      3      8
  DKK2 WILD-TYPE    122     71     65    188
D447V9, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            7             71
  CLUS_3            3             65
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DKK2 MUTATED        4      5      1      1      7      1      3      2      2
  DKK2 WILD-TYPE     36     57     27     79     62     47     40     26     72
D447V10, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            7             62
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            2             26
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DKK2 MUTATED        3      1      2      1
  DKK2 WILD-TYPE     30     30     25     18
D447V11, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DKK2 MUTATED        4      1      2      0
  DKK2 WILD-TYPE     50      9     22     22
D447V12, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(448) Variable = COX15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX15 MUTATED        1      0      0      2
  COX15 WILD-TYPE     45     58     64     41
D448V1, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX15 MUTATED        2      0      1
  COX15 WILD-TYPE     49     83     76
D448V2, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX15 MUTATED        6      1      0      0
  COX15 WILD-TYPE    172    182    101     20
D448V3, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX15 MUTATED        0      1      3
  COX15 WILD-TYPE     87     79     97
D448V4, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX15 MUTATED        1      2      4
  COX15 WILD-TYPE     88    158    134
D448V5, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX15 MUTATED        4      2      1
  COX15 WILD-TYPE    178    131     71
D448V6, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX15 MUTATED        1      2      1      3
  COX15 WILD-TYPE    111     94     91    183
D448V7, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COX15 MUTATED        2      0      2      0      1      0      2
  COX15 WILD-TYPE     58     50     47     40     62    125     97
D448V8, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX15 MUTATED        1      1      1      3
  COX15 WILD-TYPE    129     77     67    193
D448V9, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COX15 MUTATED        1      1      0      1      3      0      0      0
  COX15 WILD-TYPE     39     61     28     79     66     48     43     28
                 vv
clus              CLUS_9
  COX15 MUTATED        0
  COX15 WILD-TYPE     74
D448V10, multiclass
        clus
vv       COX15 MUTATED COX15 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX15 MUTATED        0      0      1      0
  COX15 WILD-TYPE     33     31     26     19
D448V11, multiclass
[1] "Remove cluster labels:" "COX15 MUTATED"         
clus
  COX15 MUTATED COX15 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-G5-6641 
"COX15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX15 MUTATED        0      0      1      0
  COX15 WILD-TYPE     54     10     23     22
D448V12, multiclass
[1] "Remove cluster labels:" "COX15 MUTATED"         
clus
  COX15 MUTATED COX15 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" "COX15 WILD-TYPE" 
     TCGA-G5-6641 
"COX15 WILD-TYPE" 

Clustering(449) Variable = JAK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED        4      0      0      3
  JAK2 WILD-TYPE     42     58     64     40
D449V1, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        4      2      1
  JAK2 WILD-TYPE     47     81     76
D449V2, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED       19     12     11      2
  JAK2 WILD-TYPE    159    171     90     18
D449V3, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1           19            159
  CLUS_2           12            171
  CLUS_3           11             90
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED       13     11     14
  JAK2 WILD-TYPE     74     69     86
D449V4, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1           13             74
  CLUS_2           11             69
  CLUS_3           14             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED        6     16     18
  JAK2 WILD-TYPE     83    144    120
D449V5, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            6             83
  CLUS_2           16            144
  CLUS_3           18            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK2 MUTATED       25     11      4
  JAK2 WILD-TYPE    157    122     68
D449V6, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1           25            157
  CLUS_2           11            122
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED       15      9     15      7
  JAK2 WILD-TYPE     97     87     77    179
D449V7, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1           15             97
  CLUS_2            9             87
  CLUS_3           15             77
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JAK2 MUTATED       10      8      9      3      9      1      6
  JAK2 WILD-TYPE     50     42     40     37     54    124     93
D449V8, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1           10             50
  CLUS_2            8             42
  CLUS_3            9             40
  CLUS_4            3             37
  CLUS_5            9             54
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED       26      8      2      9
  JAK2 WILD-TYPE    104     70     66    187
D449V9, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1           26            104
  CLUS_2            8             70
  CLUS_3            2             66
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  JAK2 MUTATED        6      9      6      7      8      5      4      0      0
  JAK2 WILD-TYPE     34     53     22     73     61     43     39     28     74
D449V10, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            9             53
  CLUS_3            6             22
  CLUS_4            7             73
  CLUS_5            8             61
  CLUS_6            5             43
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED        7      3      2      4
  JAK2 WILD-TYPE     26     28     25     15
D449V11, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            7             26
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK2 MUTATED        8      2      4      2
  JAK2 WILD-TYPE     46      8     20     20
D449V12, multiclass
        clus
vv       JAK2 MUTATED JAK2 WILD-TYPE
  CLUS_1            8             46
  CLUS_2            2              8
  CLUS_3            4             20
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(450) Variable = HIVEP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        4      1      0      4
  HIVEP2 WILD-TYPE     42     57     64     39
D450V1, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP2 MUTATED        4      2      3
  HIVEP2 WILD-TYPE     47     81     74
D450V2, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED       15      3      3      3
  HIVEP2 WILD-TYPE    163    180     98     17
D450V3, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP2 MUTATED        7      2      6
  HIVEP2 WILD-TYPE     80     78     94
D450V4, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP2 MUTATED        0      8     11
  HIVEP2 WILD-TYPE     89    152    127
D450V5, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              8              152
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP2 MUTATED        9      7      3
  HIVEP2 WILD-TYPE    173    126     69
D450V6, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              7              126
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        5      4      5     10
  HIVEP2 WILD-TYPE    107     92     87    176
D450V7, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIVEP2 MUTATED        4      1      4      0      5      2      8
  HIVEP2 WILD-TYPE     56     49     45     40     58    123     91
D450V8, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              5               58
  CLUS_6              2              123
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        6      4      3     11
  HIVEP2 WILD-TYPE    124     74     65    185
D450V9, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              4               74
  CLUS_3              3               65
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIVEP2 MUTATED        1      3      3      3      9      0      2      1
  HIVEP2 WILD-TYPE     39     59     25     77     60     48     41     27
                  vv
clus               CLUS_9
  HIVEP2 MUTATED        2
  HIVEP2 WILD-TYPE     72
D450V10, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        2      2      0      1
  HIVEP2 WILD-TYPE     31     29     27     18
D450V11, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        3      0      1      1
  HIVEP2 WILD-TYPE     51     10     23     21
D450V12, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(451) Variable = RELN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELN MUTATED        9      3      1      9
  RELN WILD-TYPE     37     55     63     34
D451V1, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1            9             37
  CLUS_2            3             55
  CLUS_3            1             63
  CLUS_4            9             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELN MUTATED       11      5      6
  RELN WILD-TYPE     40     78     71
D451V2, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           11             40
  CLUS_2            5             78
  CLUS_3            6             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELN MUTATED       43     13     10      5
  RELN WILD-TYPE    135    170     91     15
D451V3, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           43            135
  CLUS_2           13            170
  CLUS_3           10             91
  CLUS_4            5             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELN MUTATED       19     12     18
  RELN WILD-TYPE     68     68     82
D451V4, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           19             68
  CLUS_2           12             68
  CLUS_3           18             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELN MUTATED       12     22     28
  RELN WILD-TYPE     77    138    110
D451V5, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           12             77
  CLUS_2           22            138
  CLUS_3           28            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELN MUTATED       30     21     11
  RELN WILD-TYPE    152    112     61
D451V6, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           30            152
  CLUS_2           21            112
  CLUS_3           11             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELN MUTATED       15     19     16     20
  RELN WILD-TYPE     97     77     76    166
D451V7, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           15             97
  CLUS_2           19             77
  CLUS_3           16             76
  CLUS_4           20            166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RELN MUTATED       13      5     20      3      8      5     16
  RELN WILD-TYPE     47     45     29     37     55    120     83
D451V8, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           13             47
  CLUS_2            5             45
  CLUS_3           20             29
  CLUS_4            3             37
  CLUS_5            8             55
  CLUS_6            5            120
  CLUS_7           16             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELN MUTATED       25     14      6     25
  RELN WILD-TYPE    105     64     62    171
D451V9, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           25            105
  CLUS_2           14             64
  CLUS_3            6             62
  CLUS_4           25            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RELN MUTATED       12      9      5     10     18      3      7      3      3
  RELN WILD-TYPE     28     53     23     70     51     45     36     25     71
D451V10, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1           12             28
  CLUS_2            9             53
  CLUS_3            5             23
  CLUS_4           10             70
  CLUS_5           18             51
  CLUS_6            3             45
  CLUS_7            7             36
  CLUS_8            3             25
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELN MUTATED        6      1      1      7
  RELN WILD-TYPE     27     30     26     12
D451V11, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1            6             27
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            7             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELN MUTATED        8      1      4      2
  RELN WILD-TYPE     46      9     20     20
D451V12, multiclass
        clus
vv       RELN MUTATED RELN WILD-TYPE
  CLUS_1            8             46
  CLUS_2            1              9
  CLUS_3            4             20
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(452) Variable = FLG2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG2 MUTATED        5      2      2      3
  FLG2 WILD-TYPE     41     56     62     40
D452V1, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            2             56
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLG2 MUTATED        6      3      3
  FLG2 WILD-TYPE     45     80     74
D452V2, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            3             80
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG2 MUTATED       23      6      3      0
  FLG2 WILD-TYPE    155    177     98     20
D452V3, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1           23            155
  CLUS_2            6            177
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLG2 MUTATED        9      2     10
  FLG2 WILD-TYPE     78     78     90
D452V4, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            2             78
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLG2 MUTATED        5     12     12
  FLG2 WILD-TYPE     84    148    126
D452V5, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           12            148
  CLUS_3           12            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLG2 MUTATED       13     12      4
  FLG2 WILD-TYPE    169    121     68
D452V6, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1           13            169
  CLUS_2           12            121
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG2 MUTATED        4      9      8     12
  FLG2 WILD-TYPE    108     87     84    174
D452V7, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            9             87
  CLUS_3            8             84
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLG2 MUTATED        4      5      8      1      3      5      7
  FLG2 WILD-TYPE     56     45     41     39     60    120     92
D452V8, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            5             45
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            5            120
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG2 MUTATED       12      5      2     13
  FLG2 WILD-TYPE    118     73     66    183
D452V9, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1           12            118
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FLG2 MUTATED        1      4      1      7     10      1      3      3      2
  FLG2 WILD-TYPE     39     58     27     73     59     47     40     25     72
D452V10, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            7             73
  CLUS_5           10             59
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            3             25
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG2 MUTATED        0      2      2      4
  FLG2 WILD-TYPE     33     29     25     15
D452V11, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            2             25
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG2 MUTATED        3      0      3      2
  FLG2 WILD-TYPE     51     10     21     20
D452V12, multiclass
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(453) Variable = HMCN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMCN1 MUTATED       14      1      4     10
  HMCN1 WILD-TYPE     32     57     60     33
D453V1, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            14              32
  CLUS_2             1              57
  CLUS_3             4              60
  CLUS_4            10              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMCN1 MUTATED       16      4      9
  HMCN1 WILD-TYPE     35     79     68
D453V2, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            16              35
  CLUS_2             4              79
  CLUS_3             9              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMCN1 MUTATED       54     12     15      0
  HMCN1 WILD-TYPE    124    171     86     20
D453V3, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            54             124
  CLUS_2            12             171
  CLUS_3            15              86
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMCN1 MUTATED       18     13     22
  HMCN1 WILD-TYPE     69     67     78
D453V4, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            18              69
  CLUS_2            13              67
  CLUS_3            22              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMCN1 MUTATED        8     26     36
  HMCN1 WILD-TYPE     81    134    102
D453V5, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1             8              81
  CLUS_2            26             134
  CLUS_3            36             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMCN1 MUTATED       37     24      9
  HMCN1 WILD-TYPE    145    109     63
D453V6, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            37             145
  CLUS_2            24             109
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMCN1 MUTATED       11     20     23     28
  HMCN1 WILD-TYPE    101     76     69    158
D453V7, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            11             101
  CLUS_2            20              76
  CLUS_3            23              69
  CLUS_4            28             158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMCN1 MUTATED        9      9     19      4     10      8     23
  HMCN1 WILD-TYPE     51     41     30     36     53    117     76
D453V8, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1             9              51
  CLUS_2             9              41
  CLUS_3            19              30
  CLUS_4             4              36
  CLUS_5            10              53
  CLUS_6             8             117
  CLUS_7            23              76
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMCN1 MUTATED       28     14      5     31
  HMCN1 WILD-TYPE    102     64     63    165
D453V9, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            28             102
  CLUS_2            14              64
  CLUS_3             5              63
  CLUS_4            31             165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HMCN1 MUTATED       10     14      5     10     19      4      5      4
  HMCN1 WILD-TYPE     30     48     23     70     50     44     38     24
                 vv
clus              CLUS_9
  HMCN1 MUTATED        7
  HMCN1 WILD-TYPE     67
D453V10, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            10              30
  CLUS_2            14              48
  CLUS_3             5              23
  CLUS_4            10              70
  CLUS_5            19              50
  CLUS_6             4              44
  CLUS_7             5              38
  CLUS_8             4              24
  CLUS_9             7              67
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMCN1 MUTATED        5      4      2      4
  HMCN1 WILD-TYPE     28     27     25     15
D453V11, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             4              27
  CLUS_3             2              25
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMCN1 MUTATED       10      2      1      2
  HMCN1 WILD-TYPE     44      8     23     20
D453V12, multiclass
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  CLUS_1            10              44
  CLUS_2             2               8
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(454) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       11      4      5     10
  PIK3CA WILD-TYPE     35     54     59     33
D454V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             11               35
  CLUS_2              4               54
  CLUS_3              5               59
  CLUS_4             10               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       12      7     11
  PIK3CA WILD-TYPE     39     76     66
D454V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             12               39
  CLUS_2              7               76
  CLUS_3             11               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       89     68     46      5
  PIK3CA WILD-TYPE     89    115     55     15
D454V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             89               89
  CLUS_2             68              115
  CLUS_3             46               55
  CLUS_4              5               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       56     49     72
  PIK3CA WILD-TYPE     31     31     28
D454V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             56               31
  CLUS_2             49               31
  CLUS_3             72               28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       32     73     75
  PIK3CA WILD-TYPE     57     87     63
D454V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             32               57
  CLUS_2             73               87
  CLUS_3             75               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       99     56     25
  PIK3CA WILD-TYPE     83     77     47
D454V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             99               83
  CLUS_2             56               77
  CLUS_3             25               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       66     54     59     32
  PIK3CA WILD-TYPE     46     42     33    154
D454V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             66               46
  CLUS_2             54               42
  CLUS_3             59               33
  CLUS_4             32              154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CA MUTATED       44     35     34     22     37     11     28
  PIK3CA WILD-TYPE     16     15     15     18     26    114     71
D454V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             44               16
  CLUS_2             35               15
  CLUS_3             34               15
  CLUS_4             22               18
  CLUS_5             37               26
  CLUS_6             11              114
  CLUS_7             28               71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       93     42     29     43
  PIK3CA WILD-TYPE     37     36     39    153
D454V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             93               37
  CLUS_2             42               36
  CLUS_3             29               39
  CLUS_4             43              153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3CA MUTATED       27     40     21     35     25     13     28      8
  PIK3CA WILD-TYPE     13     22      7     45     44     35     15     20
                  vv
clus               CLUS_9
  PIK3CA MUTATED       10
  PIK3CA WILD-TYPE     64
D454V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             27               13
  CLUS_2             40               22
  CLUS_3             21                7
  CLUS_4             35               45
  CLUS_5             25               44
  CLUS_6             13               35
  CLUS_7             28               15
  CLUS_8              8               20
  CLUS_9             10               64
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       21     17     16     12
  PIK3CA WILD-TYPE     12     14     11      7
D454V11, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             21               12
  CLUS_2             17               14
  CLUS_3             16               11
  CLUS_4             12                7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       33      5     15     13
  PIK3CA WILD-TYPE     21      5      9      9
D454V12, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             33               21
  CLUS_2              5                5
  CLUS_3             15                9
  CLUS_4             13                9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(455) Variable = PRKD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKD1 MUTATED        4      2      2      3
  PRKD1 WILD-TYPE     42     56     62     40
D455V1, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKD1 MUTATED        4      5      2
  PRKD1 WILD-TYPE     47     78     75
D455V2, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             5              78
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKD1 MUTATED       18      7      2      1
  PRKD1 WILD-TYPE    160    176     99     19
D455V3, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             7             176
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKD1 MUTATED        6      2     10
  PRKD1 WILD-TYPE     81     78     90
D455V4, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKD1 MUTATED        4     10     12
  PRKD1 WILD-TYPE     85    150    126
D455V5, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            10             150
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKD1 MUTATED       14      8      4
  PRKD1 WILD-TYPE    168    125     68
D455V6, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKD1 MUTATED        4      7      6     12
  PRKD1 WILD-TYPE    108     89     86    174
D455V7, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4            12             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKD1 MUTATED        5      4      3      3      2      6      6
  PRKD1 WILD-TYPE     55     46     46     37     61    119     93
D455V8, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             6             119
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKD1 MUTATED       11      3      2     13
  PRKD1 WILD-TYPE    119     75     66    183
D455V9, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKD1 MUTATED        3      5      3      3      5      3      2      1
  PRKD1 WILD-TYPE     37     57     25     77     64     45     41     27
                 vv
clus              CLUS_9
  PRKD1 MUTATED        4
  PRKD1 WILD-TYPE     70
D455V10, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             3              45
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKD1 MUTATED        1      1      1      3
  PRKD1 WILD-TYPE     32     30     26     16
D455V11, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKD1 MUTATED        4      0      1      1
  PRKD1 WILD-TYPE     50     10     23     21
D455V12, multiclass
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(456) Variable = ADAMTS19 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS19 MUTATED        1      0      1      4
  ADAMTS19 WILD-TYPE     45     58     63     39
D456V1, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS19 MUTATED        3      1      2
  ADAMTS19 WILD-TYPE     48     82     75
D456V2, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS19 MUTATED       18      5      2      0
  ADAMTS19 WILD-TYPE    160    178     99     20
D456V3, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1               18                160
  CLUS_2                5                178
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS19 MUTATED        9      1      8
  ADAMTS19 WILD-TYPE     78     79     92
D456V4, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                9                 78
  CLUS_2                1                 79
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS19 MUTATED        3     10     11
  ADAMTS19 WILD-TYPE     86    150    127
D456V5, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2               10                150
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS19 MUTATED       12      9      3
  ADAMTS19 WILD-TYPE    170    124     69
D456V6, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1               12                170
  CLUS_2                9                124
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS19 MUTATED        5      9      6      5
  ADAMTS19 WILD-TYPE    107     87     86    181
D456V7, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                5                107
  CLUS_2                9                 87
  CLUS_3                6                 86
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAMTS19 MUTATED        5      6      5      2      2      0      5
  ADAMTS19 WILD-TYPE     55     44     44     38     61    125     94
D456V8, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                5                 55
  CLUS_2                6                 44
  CLUS_3                5                 44
  CLUS_4                2                 38
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS19 MUTATED       10      2      4      8
  ADAMTS19 WILD-TYPE    120     76     64    188
D456V9, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1               10                120
  CLUS_2                2                 76
  CLUS_3                4                 64
  CLUS_4                8                188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAMTS19 MUTATED        3      3      3      4      5      0      3      1
  ADAMTS19 WILD-TYPE     37     59     25     76     64     48     40     27
                    vv
clus                 CLUS_9
  ADAMTS19 MUTATED        2
  ADAMTS19 WILD-TYPE     72
D456V10, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                3                 59
  CLUS_3                3                 25
  CLUS_4                4                 76
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS19 MUTATED        3      1      3      0
  ADAMTS19 WILD-TYPE     30     30     24     19
D456V11, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 30
  CLUS_3                3                 24
  CLUS_4                0                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS19 MUTATED        3      0      3      1
  ADAMTS19 WILD-TYPE     51     10     21     21
D456V12, multiclass
        clus
vv       ADAMTS19 MUTATED ADAMTS19 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                3                 21
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(457) Variable = CLVS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS2 MUTATED        0      0      0      3
  CLVS2 WILD-TYPE     46     58     64     40
D457V1, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS2 MUTATED        2      0      1
  CLVS2 WILD-TYPE     49     83     76
D457V2, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS2 MUTATED        6      2      1      1
  CLVS2 WILD-TYPE    172    181    100     19
D457V3, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS2 MUTATED        1      3      3
  CLVS2 WILD-TYPE     86     77     97
D457V4, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS2 MUTATED        3      3      3
  CLVS2 WILD-TYPE     86    157    135
D457V5, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS2 MUTATED        3      3      3
  CLVS2 WILD-TYPE    179    130     69
D457V6, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS2 MUTATED        3      2      2      3
  CLVS2 WILD-TYPE    109     94     90    183
D457V7, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLVS2 MUTATED        4      0      2      1      1      0      2
  CLVS2 WILD-TYPE     56     50     47     39     62    125     97
D457V8, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS2 MUTATED        7      0      0      2
  CLVS2 WILD-TYPE    123     78     68    194
D457V9, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLVS2 MUTATED        2      0      0      1      4      2      0      0
  CLVS2 WILD-TYPE     38     62     28     79     65     46     43     28
                 vv
clus              CLUS_9
  CLVS2 MUTATED        0
  CLVS2 WILD-TYPE     74
D457V10, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS2 MUTATED        0      0      0      2
  CLVS2 WILD-TYPE     33     31     27     17
D457V11, multiclass
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS2 MUTATED        0      0      1      1
  CLVS2 WILD-TYPE     54     10     23     21
D457V12, multiclass
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 

Clustering(458) Variable = GTF3C3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        1      1      0      3
  GTF3C3 WILD-TYPE     45     57     64     40
D458V1, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C3 MUTATED        1      2      2
  GTF3C3 WILD-TYPE     50     81     75
D458V2, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED       12      5      1      0
  GTF3C3 WILD-TYPE    166    178    100     20
D458V3, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C3 MUTATED        7      1      5
  GTF3C3 WILD-TYPE     80     79     95
D458V4, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C3 MUTATED        0      7      7
  GTF3C3 WILD-TYPE     89    153    131
D458V5, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C3 MUTATED        7      7      0
  GTF3C3 WILD-TYPE    175    126     72
D458V6, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              7              126
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        2      4      7      5
  GTF3C3 WILD-TYPE    110     92     85    181
D458V7, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              7               85
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF3C3 MUTATED        2      3      6      1      2      1      3
  GTF3C3 WILD-TYPE     58     47     43     39     61    124     96
D458V8, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        6      6      0      6
  GTF3C3 WILD-TYPE    124     72     68    190
D458V9, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              6               72
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GTF3C3 MUTATED        1      2      3      4      4      1      2      0
  GTF3C3 WILD-TYPE     39     60     25     76     65     47     41     28
                  vv
clus               CLUS_9
  GTF3C3 MUTATED        1
  GTF3C3 WILD-TYPE     73
D458V10, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              3               25
  CLUS_4              4               76
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        3      1      0      2
  GTF3C3 WILD-TYPE     30     30     27     17
D458V11, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C3 MUTATED        4      0      2      0
  GTF3C3 WILD-TYPE     50     10     22     22
D458V12, multiclass
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(459) Variable = BAI3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAI3 MUTATED        6      2      3      7
  BAI3 WILD-TYPE     40     56     61     36
D459V1, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            2             56
  CLUS_3            3             61
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAI3 MUTATED        9      6      3
  BAI3 WILD-TYPE     42     77     74
D459V2, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            9             42
  CLUS_2            6             77
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAI3 MUTATED       27     16      8      2
  BAI3 WILD-TYPE    151    167     93     18
D459V3, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           27            151
  CLUS_2           16            167
  CLUS_3            8             93
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAI3 MUTATED       10      7     19
  BAI3 WILD-TYPE     77     73     81
D459V4, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           10             77
  CLUS_2            7             73
  CLUS_3           19             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAI3 MUTATED        5     20     18
  BAI3 WILD-TYPE     84    140    120
D459V5, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           20            140
  CLUS_3           18            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAI3 MUTATED       25     14      4
  BAI3 WILD-TYPE    157    119     68
D459V6, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           25            157
  CLUS_2           14            119
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAI3 MUTATED       12     12     13     17
  BAI3 WILD-TYPE    100     84     79    169
D459V7, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           12            100
  CLUS_2           12             84
  CLUS_3           13             79
  CLUS_4           17            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAI3 MUTATED       11      6      9      4      6      6     12
  BAI3 WILD-TYPE     49     44     40     36     57    119     87
D459V8, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           11             49
  CLUS_2            6             44
  CLUS_3            9             40
  CLUS_4            4             36
  CLUS_5            6             57
  CLUS_6            6            119
  CLUS_7           12             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAI3 MUTATED       19      7     10     16
  BAI3 WILD-TYPE    111     71     58    180
D459V9, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1           19            111
  CLUS_2            7             71
  CLUS_3           10             58
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BAI3 MUTATED        4     10      2      2     13      6      8      2      5
  BAI3 WILD-TYPE     36     52     26     78     56     42     35     26     69
D459V10, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            4             36
  CLUS_2           10             52
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5           13             56
  CLUS_6            6             42
  CLUS_7            8             35
  CLUS_8            2             26
  CLUS_9            5             69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAI3 MUTATED        3      1      5      5
  BAI3 WILD-TYPE     30     30     22     14
D459V11, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            5             22
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAI3 MUTATED        6      0      5      3
  BAI3 WILD-TYPE     48     10     19     19
D459V12, multiclass
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            5             19
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(460) Variable = AURKA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AURKA MUTATED        0      0      0      2
  AURKA WILD-TYPE     46     58     64     41
D460V1, multiclass
[1] "Remove cluster labels:" "AURKA MUTATED"         
clus
  AURKA MUTATED AURKA WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AY-4071 
"AURKA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AURKA MUTATED        2      0      0
  AURKA WILD-TYPE     49     83     77
D460V2, multiclass
[1] "Remove cluster labels:" "AURKA MUTATED"         
clus
  AURKA MUTATED AURKA WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" "AURKA WILD-TYPE" 
     TCGA-AY-4071 
"AURKA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AURKA MUTATED        3      4      0      0
  AURKA WILD-TYPE    175    179    101     20
D460V3, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             3             175
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AURKA MUTATED        2      2      1
  AURKA WILD-TYPE     85     78     99
D460V4, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AURKA MUTATED        2      1      4
  AURKA WILD-TYPE     87    159    134
D460V5, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AURKA MUTATED        4      2      1
  AURKA WILD-TYPE    178    131     71
D460V6, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AURKA MUTATED        2      0      3      2
  AURKA WILD-TYPE    110     96     89    184
D460V7, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              96
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AURKA MUTATED        2      1      1      1      0      0      2
  AURKA WILD-TYPE     58     49     48     39     63    125     97
D460V8, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AURKA MUTATED        1      2      2      2
  AURKA WILD-TYPE    129     76     66    194
D460V9, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AURKA MUTATED        0      2      0      0      2      0      3      0
  AURKA WILD-TYPE     40     60     28     80     67     48     40     28
                 vv
clus              CLUS_9
  AURKA MUTATED        0
  AURKA WILD-TYPE     74
D460V10, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AURKA MUTATED        3      0      0      0
  AURKA WILD-TYPE     30     31     27     19
D460V11, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AURKA MUTATED        3      0      0      0
  AURKA WILD-TYPE     51     10     24     22
D460V12, multiclass
        clus
vv       AURKA MUTATED AURKA WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(461) Variable = RBM7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM7 MUTATED        0      1      0      1
  RBM7 WILD-TYPE     46     57     64     42
D461V1, multiclass
[1] "Remove cluster labels:" "RBM7 MUTATED"          
clus
  RBM7 MUTATED RBM7 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AY-4071 
"RBM7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM7 MUTATED        1      0      1
  RBM7 WILD-TYPE     50     83     76
D461V2, multiclass
[1] "Remove cluster labels:" "RBM7 MUTATED"          
clus
  RBM7 MUTATED RBM7 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" "RBM7 WILD-TYPE" 
    TCGA-AY-4071 
"RBM7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM7 MUTATED        6      4      1      0
  RBM7 WILD-TYPE    172    179    100     20
D461V3, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM7 MUTATED        3      3      3
  RBM7 WILD-TYPE     84     77     97
D461V4, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            3             77
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM7 MUTATED        0      3      6
  RBM7 WILD-TYPE     89    157    132
D461V5, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM7 MUTATED        5      4      0
  RBM7 WILD-TYPE    177    129     72
D461V6, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM7 MUTATED        4      4      1      2
  RBM7 WILD-TYPE    108     92     91    184
D461V7, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM7 MUTATED        1      3      1      1      3      1      1
  RBM7 WILD-TYPE     59     47     48     39     60    124     98
D461V8, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM7 MUTATED        3      3      2      2
  RBM7 WILD-TYPE    127     75     66    194
D461V9, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBM7 MUTATED        1      3      0      2      1      0      2      0      1
  RBM7 WILD-TYPE     39     59     28     78     68     48     41     28     73
D461V10, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM7 MUTATED        2      1      0      0
  RBM7 WILD-TYPE     31     30     27     19
D461V11, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM7 MUTATED        2      1      0      0
  RBM7 WILD-TYPE     52      9     24     22
D461V12, multiclass
        clus
vv       RBM7 MUTATED RBM7 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(462) Variable = CNTNAP5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP5 MUTATED        3      0      1      3
  CNTNAP5 WILD-TYPE     43     58     63     40
D462V1, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP5 MUTATED        3      3      1
  CNTNAP5 WILD-TYPE     48     80     76
D462V2, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP5 MUTATED       28     12      6      1
  CNTNAP5 WILD-TYPE    150    171     95     19
D462V3, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1              28               150
  CLUS_2              12               171
  CLUS_3               6                95
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP5 MUTATED       13     11     14
  CNTNAP5 WILD-TYPE     74     69     86
D462V4, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1              13                74
  CLUS_2              11                69
  CLUS_3              14                86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP5 MUTATED        6     17     16
  CNTNAP5 WILD-TYPE     83    143    122
D462V5, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               6                83
  CLUS_2              17               143
  CLUS_3              16               122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP5 MUTATED       17     16      6
  CNTNAP5 WILD-TYPE    165    117     66
D462V6, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1              17               165
  CLUS_2              16               117
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP5 MUTATED       10     14     13     10
  CNTNAP5 WILD-TYPE    102     82     79    176
D462V7, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1              10               102
  CLUS_2              14                82
  CLUS_3              13                79
  CLUS_4              10               176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNTNAP5 MUTATED        7      9     13      3      5      4      6
  CNTNAP5 WILD-TYPE     53     41     36     37     58    121     93
D462V8, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               7                53
  CLUS_2               9                41
  CLUS_3              13                36
  CLUS_4               3                37
  CLUS_5               5                58
  CLUS_6               4               121
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP5 MUTATED       16     14      5     11
  CNTNAP5 WILD-TYPE    114     64     63    185
D462V9, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1              16               114
  CLUS_2              14                64
  CLUS_3               5                63
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNTNAP5 MUTATED        5     10      2      6     10      4      4      1
  CNTNAP5 WILD-TYPE     35     52     26     74     59     44     39     27
                   vv
clus                CLUS_9
  CNTNAP5 MUTATED        4
  CNTNAP5 WILD-TYPE     70
D462V10, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               5                35
  CLUS_2              10                52
  CLUS_3               2                26
  CLUS_4               6                74
  CLUS_5              10                59
  CLUS_6               4                44
  CLUS_7               4                39
  CLUS_8               1                27
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP5 MUTATED        3      4      3      7
  CNTNAP5 WILD-TYPE     30     27     24     12
D462V11, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               4                27
  CLUS_3               3                24
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP5 MUTATED       11      1      5      0
  CNTNAP5 WILD-TYPE     43      9     19     22
D462V12, multiclass
        clus
vv       CNTNAP5 MUTATED CNTNAP5 WILD-TYPE
  CLUS_1              11                43
  CLUS_2               1                 9
  CLUS_3               5                19
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(463) Variable = TMPRSS15 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS15 MUTATED        2      0      0      6
  TMPRSS15 WILD-TYPE     44     58     64     37
D463V1, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                6                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMPRSS15 MUTATED        5      1      2
  TMPRSS15 WILD-TYPE     46     82     75
D463V2, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS15 MUTATED       17      6      3      0
  TMPRSS15 WILD-TYPE    161    177     98     20
D463V3, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1               17                161
  CLUS_2                6                177
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMPRSS15 MUTATED        5      6      7
  TMPRSS15 WILD-TYPE     82     74     93
D463V4, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                6                 74
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMPRSS15 MUTATED        4     13      6
  TMPRSS15 WILD-TYPE     85    147    132
D463V5, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2               13                147
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMPRSS15 MUTATED       10     10      3
  TMPRSS15 WILD-TYPE    172    123     69
D463V6, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1               10                172
  CLUS_2               10                123
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS15 MUTATED        4      8      5      8
  TMPRSS15 WILD-TYPE    108     88     87    178
D463V7, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                4                108
  CLUS_2                8                 88
  CLUS_3                5                 87
  CLUS_4                8                178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMPRSS15 MUTATED        3      4      3      3      3      1      8
  TMPRSS15 WILD-TYPE     57     46     46     37     60    124     91
D463V8, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                4                 46
  CLUS_3                3                 46
  CLUS_4                3                 37
  CLUS_5                3                 60
  CLUS_6                1                124
  CLUS_7                8                 91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS15 MUTATED        7      3      4     12
  TMPRSS15 WILD-TYPE    123     75     64    184
D463V9, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                3                 75
  CLUS_3                4                 64
  CLUS_4               12                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMPRSS15 MUTATED        1      4      3      4     10      1      2      0
  TMPRSS15 WILD-TYPE     39     58     25     76     59     47     41     28
                    vv
clus                 CLUS_9
  TMPRSS15 MUTATED        1
  TMPRSS15 WILD-TYPE     73
D463V10, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                4                 58
  CLUS_3                3                 25
  CLUS_4                4                 76
  CLUS_5               10                 59
  CLUS_6                1                 47
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS15 MUTATED        1      1      3      4
  TMPRSS15 WILD-TYPE     32     30     24     15
D463V11, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                3                 24
  CLUS_4                4                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS15 MUTATED        3      1      4      1
  TMPRSS15 WILD-TYPE     51      9     20     21
D463V12, multiclass
        clus
vv       TMPRSS15 MUTATED TMPRSS15 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                1                  9
  CLUS_3                4                 20
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(464) Variable = EGFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED        5      1      2      3
  EGFR WILD-TYPE     41     57     62     40
D464V1, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        7      3      1
  EGFR WILD-TYPE     44     80     76
D464V2, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            7             44
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       27     32     17      7
  EGFR WILD-TYPE    151    151     84     13
D464V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           27            151
  CLUS_2           32            151
  CLUS_3           17             84
  CLUS_4            7             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       20     26     26
  EGFR WILD-TYPE     67     54     74
D464V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           20             67
  CLUS_2           26             54
  CLUS_3           26             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        8     32     32
  EGFR WILD-TYPE     81    128    106
D464V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            8             81
  CLUS_2           32            128
  CLUS_3           32            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       38     24     10
  EGFR WILD-TYPE    144    109     62
D464V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           38            144
  CLUS_2           24            109
  CLUS_3           10             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       34     16     22     12
  EGFR WILD-TYPE     78     80     70    174
D464V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           34             78
  CLUS_2           16             80
  CLUS_3           22             70
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EGFR MUTATED       24     13     12      6     18      3      8
  EGFR WILD-TYPE     36     37     37     34     45    122     91
D464V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           24             36
  CLUS_2           13             37
  CLUS_3           12             37
  CLUS_4            6             34
  CLUS_5           18             45
  CLUS_6            3            122
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       41     17     11     12
  EGFR WILD-TYPE     89     61     57    184
D464V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           41             89
  CLUS_2           17             61
  CLUS_3           11             57
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EGFR MUTATED       11     18      8     13     10      8     11      0      2
  EGFR WILD-TYPE     29     44     20     67     59     40     32     28     72
D464V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           11             29
  CLUS_2           18             44
  CLUS_3            8             20
  CLUS_4           13             67
  CLUS_5           10             59
  CLUS_6            8             40
  CLUS_7           11             32
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       12      9      4      5
  EGFR WILD-TYPE     21     22     23     14
D464V11, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           12             21
  CLUS_2            9             22
  CLUS_3            4             23
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       18      2      5      5
  EGFR WILD-TYPE     36      8     19     17
D464V12, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           18             36
  CLUS_2            2              8
  CLUS_3            5             19
  CLUS_4            5             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(465) Variable = CTBP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        0      0      0      0
  CTBP2 WILD-TYPE     46     58     64     43
D465V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTBP2 MUTATED        0      0      0
  CTBP2 WILD-TYPE     51     83     77
D465V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        6      1      0      0
  CTBP2 WILD-TYPE    172    182    101     20
D465V3, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTBP2 MUTATED        2      1      4
  CTBP2 WILD-TYPE     85     79     96
D465V4, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTBP2 MUTATED        1      3      2
  CTBP2 WILD-TYPE     88    157    136
D465V5, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTBP2 MUTATED        3      2      1
  CTBP2 WILD-TYPE    179    131     71
D465V6, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        1      3      3      0
  CTBP2 WILD-TYPE    111     93     89    186
D465V7, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTBP2 MUTATED        1      0      3      2      1      0      0
  CTBP2 WILD-TYPE     59     50     46     38     62    125     99
D465V8, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        3      2      0      2
  CTBP2 WILD-TYPE    127     76     68    194
D465V9, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CTBP2 MUTATED        1      1      0      1      3      1      0      0
  CTBP2 WILD-TYPE     39     61     28     79     66     47     43     28
                 vv
clus              CLUS_9
  CTBP2 MUTATED        0
  CTBP2 WILD-TYPE     74
D465V10, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        2      0      0      0
  CTBP2 WILD-TYPE     31     31     27     19
D465V11, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-6157 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        1      0      0      1
  CTBP2 WILD-TYPE     53     10     24     21
D465V12, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-6157 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 

Clustering(466) Variable = APOB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOB MUTATED        5      3      1     10
  APOB WILD-TYPE     41     55     63     33
D466V1, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1            5             41
  CLUS_2            3             55
  CLUS_3            1             63
  CLUS_4           10             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  APOB MUTATED       10      6      3
  APOB WILD-TYPE     41     77     74
D466V2, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           10             41
  CLUS_2            6             77
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOB MUTATED       39     17      7      4
  APOB WILD-TYPE    139    166     94     16
D466V3, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           39            139
  CLUS_2           17            166
  CLUS_3            7             94
  CLUS_4            4             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  APOB MUTATED       15      8     23
  APOB WILD-TYPE     72     72     77
D466V4, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           15             72
  CLUS_2            8             72
  CLUS_3           23             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  APOB MUTATED        9     27     22
  APOB WILD-TYPE     80    133    116
D466V5, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1            9             80
  CLUS_2           27            133
  CLUS_3           22            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  APOB MUTATED       27     19     12
  APOB WILD-TYPE    155    114     60
D466V6, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           27            155
  CLUS_2           19            114
  CLUS_3           12             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOB MUTATED       16     17     17     17
  APOB WILD-TYPE     96     79     75    169
D466V7, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           16             96
  CLUS_2           17             79
  CLUS_3           17             75
  CLUS_4           17            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APOB MUTATED       11      6     13      5     12      5     15
  APOB WILD-TYPE     49     44     36     35     51    120     84
D466V8, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           11             49
  CLUS_2            6             44
  CLUS_3           13             36
  CLUS_4            5             35
  CLUS_5           12             51
  CLUS_6            5            120
  CLUS_7           15             84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOB MUTATED       25     11      6     23
  APOB WILD-TYPE    105     67     62    173
D466V9, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1           25            105
  CLUS_2           11             67
  CLUS_3            6             62
  CLUS_4           23            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  APOB MUTATED        7     11      4     13     15      6      4      2      3
  APOB WILD-TYPE     33     51     24     67     54     42     39     26     71
D466V10, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1            7             33
  CLUS_2           11             51
  CLUS_3            4             24
  CLUS_4           13             67
  CLUS_5           15             54
  CLUS_6            6             42
  CLUS_7            4             39
  CLUS_8            2             26
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOB MUTATED        3      5      5      2
  APOB WILD-TYPE     30     26     22     17
D466V11, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1            3             30
  CLUS_2            5             26
  CLUS_3            5             22
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOB MUTATED        7      2      4      2
  APOB WILD-TYPE     47      8     20     20
D466V12, multiclass
        clus
vv       APOB MUTATED APOB WILD-TYPE
  CLUS_1            7             47
  CLUS_2            2              8
  CLUS_3            4             20
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(467) Variable = EPHA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED       11      2      1      4
  EPHA3 WILD-TYPE     35     56     63     39
D467V1, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            11              35
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA3 MUTATED        9      5      4
  EPHA3 WILD-TYPE     42     78     73
D467V2, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             5              78
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED       34     17     10      3
  EPHA3 WILD-TYPE    144    166     91     17
D467V3, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            34             144
  CLUS_2            17             166
  CLUS_3            10              91
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA3 MUTATED       15      9     23
  EPHA3 WILD-TYPE     72     71     77
D467V4, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            15              72
  CLUS_2             9              71
  CLUS_3            23              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA3 MUTATED        5     22     28
  EPHA3 WILD-TYPE     84    138    110
D467V5, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            22             138
  CLUS_3            28             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA3 MUTATED       27     17     11
  EPHA3 WILD-TYPE    155    116     61
D467V6, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            27             155
  CLUS_2            17             116
  CLUS_3            11              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED       14     18     15     18
  EPHA3 WILD-TYPE     98     78     77    168
D467V7, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            14              98
  CLUS_2            18              78
  CLUS_3            15              77
  CLUS_4            18             168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA3 MUTATED        9      9     17      4      7      4     15
  EPHA3 WILD-TYPE     51     41     32     36     56    121     84
D467V8, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             9              51
  CLUS_2             9              41
  CLUS_3            17              32
  CLUS_4             4              36
  CLUS_5             7              56
  CLUS_6             4             121
  CLUS_7            15              84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED       25     10      6     23
  EPHA3 WILD-TYPE    105     68     62    173
D467V9, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            25             105
  CLUS_2            10              68
  CLUS_3             6              62
  CLUS_4            23             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHA3 MUTATED        5     11      4      6     19      5      8      2
  EPHA3 WILD-TYPE     35     51     24     74     50     43     35     26
                 vv
clus              CLUS_9
  EPHA3 MUTATED        4
  EPHA3 WILD-TYPE     70
D467V10, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             5              35
  CLUS_2            11              51
  CLUS_3             4              24
  CLUS_4             6              74
  CLUS_5            19              50
  CLUS_6             5              43
  CLUS_7             8              35
  CLUS_8             2              26
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED        3      5      5      5
  EPHA3 WILD-TYPE     30     26     22     14
D467V11, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             5              26
  CLUS_3             5              22
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED        5      1      7      5
  EPHA3 WILD-TYPE     49      9     17     17
D467V12, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             7              17
  CLUS_4             5              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(468) Variable = PTPN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      1      0      2
  PTPN11 WILD-TYPE     45     57     64     41
D468V1, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        2      1      1
  PTPN11 WILD-TYPE     49     82     76
D468V2, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED       16     16      6      1
  PTPN11 WILD-TYPE    162    167     95     19
D468V3, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1             16              162
  CLUS_2             16              167
  CLUS_3              6               95
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        6     16     14
  PTPN11 WILD-TYPE     81     64     86
D468V4, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              6               81
  CLUS_2             16               64
  CLUS_3             14               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        4     19     11
  PTPN11 WILD-TYPE     85    141    127
D468V5, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             19              141
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED       15     16      3
  PTPN11 WILD-TYPE    167    117     69
D468V6, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1             15              167
  CLUS_2             16              117
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED       17     11      7      5
  PTPN11 WILD-TYPE     95     85     85    181
D468V7, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1             17               95
  CLUS_2             11               85
  CLUS_3              7               85
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN11 MUTATED       11     10      7      3      5      2      2
  PTPN11 WILD-TYPE     49     40     42     37     58    123     97
D468V8, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1             11               49
  CLUS_2             10               40
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              5               58
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED       17      7     10      6
  PTPN11 WILD-TYPE    113     71     58    190
D468V9, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1             17              113
  CLUS_2              7               71
  CLUS_3             10               58
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPN11 MUTATED        4      6      3     10      6      3      8      0
  PTPN11 WILD-TYPE     36     56     25     70     63     45     35     28
                  vv
clus               CLUS_9
  PTPN11 MUTATED        0
  PTPN11 WILD-TYPE     74
D468V10, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              6               56
  CLUS_3              3               25
  CLUS_4             10               70
  CLUS_5              6               63
  CLUS_6              3               45
  CLUS_7              8               35
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        3      2      7      4
  PTPN11 WILD-TYPE     30     29     20     15
D468V11, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               29
  CLUS_3              7               20
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        5      3      6      2
  PTPN11 WILD-TYPE     49      7     18     20
D468V12, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              3                7
  CLUS_3              6               18
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(469) Variable = KIAA1409 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1409 MUTATED        6      0      0      8
  KIAA1409 WILD-TYPE     40     58     64     35
D469V1, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                6                 40
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                8                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1409 MUTATED       11      1      2
  KIAA1409 WILD-TYPE     40     82     75
D469V2, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1               11                 40
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1409 MUTATED       28      6      5      3
  KIAA1409 WILD-TYPE    150    177     96     17
D469V3, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1               28                150
  CLUS_2                6                177
  CLUS_3                5                 96
  CLUS_4                3                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1409 MUTATED       14      5      9
  KIAA1409 WILD-TYPE     73     75     91
D469V4, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1               14                 73
  CLUS_2                5                 75
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1409 MUTATED        8     11     18
  KIAA1409 WILD-TYPE     81    149    120
D469V5, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                8                 81
  CLUS_2               11                149
  CLUS_3               18                120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1409 MUTATED       20      8      9
  KIAA1409 WILD-TYPE    162    125     63
D469V6, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1               20                162
  CLUS_2                8                125
  CLUS_3                9                 63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1409 MUTATED        6     13     11     12
  KIAA1409 WILD-TYPE    106     83     81    174
D469V7, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                6                106
  CLUS_2               13                 83
  CLUS_3               11                 81
  CLUS_4               12                174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1409 MUTATED        2      8      8      4      6      0     14
  KIAA1409 WILD-TYPE     58     42     41     36     57    125     85
D469V8, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                8                 42
  CLUS_3                8                 41
  CLUS_4                4                 36
  CLUS_5                6                 57
  CLUS_6                0                125
  CLUS_7               14                 85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1409 MUTATED       14      7      2     19
  KIAA1409 WILD-TYPE    116     71     66    177
D469V9, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1               14                116
  CLUS_2                7                 71
  CLUS_3                2                 66
  CLUS_4               19                177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1409 MUTATED        1     11      4      4     13      1      5      1
  KIAA1409 WILD-TYPE     39     51     24     76     56     47     38     27
                    vv
clus                 CLUS_9
  KIAA1409 MUTATED        2
  KIAA1409 WILD-TYPE     72
D469V10, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2               11                 51
  CLUS_3                4                 24
  CLUS_4                4                 76
  CLUS_5               13                 56
  CLUS_6                1                 47
  CLUS_7                5                 38
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1409 MUTATED        3      1      1      4
  KIAA1409 WILD-TYPE     30     30     26     15
D469V11, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                4                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1409 MUTATED        5      1      1      2
  KIAA1409 WILD-TYPE     49      9     23     20
D469V12, multiclass
        clus
vv       KIAA1409 MUTATED KIAA1409 WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                1                  9
  CLUS_3                1                 23
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(470) Variable = DOCK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK1 MUTATED        3      0      0      4
  DOCK1 WILD-TYPE     43     58     64     39
D470V1, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK1 MUTATED        2      2      3
  DOCK1 WILD-TYPE     49     81     74
D470V2, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK1 MUTATED       20      1      4      1
  DOCK1 WILD-TYPE    158    182     97     19
D470V3, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1            20             158
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK1 MUTATED        6      4     10
  DOCK1 WILD-TYPE     81     76     90
D470V4, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK1 MUTATED        4      8     10
  DOCK1 WILD-TYPE     85    152    128
D470V5, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             8             152
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK1 MUTATED        9     10      3
  DOCK1 WILD-TYPE    173    123     69
D470V6, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2            10             123
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK1 MUTATED        6      8      6      7
  DOCK1 WILD-TYPE    106     88     86    179
D470V7, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             8              88
  CLUS_3             6              86
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK1 MUTATED        7      3      9      0      1      2      5
  DOCK1 WILD-TYPE     53     47     40     40     62    123     94
D470V8, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK1 MUTATED       15      2      0      9
  DOCK1 WILD-TYPE    115     76     68    187
D470V9, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1            15             115
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DOCK1 MUTATED        3      2      3      4     11      1      1      0
  DOCK1 WILD-TYPE     37     60     25     76     58     47     42     28
                 vv
clus              CLUS_9
  DOCK1 MUTATED        1
  DOCK1 WILD-TYPE     73
D470V10, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5            11              58
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK1 MUTATED        2      0      1      3
  DOCK1 WILD-TYPE     31     31     26     16
D470V11, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK1 MUTATED        3      0      2      1
  DOCK1 WILD-TYPE     51     10     22     21
D470V12, multiclass
        clus
vv       DOCK1 MUTATED DOCK1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(471) Variable = GRM8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM8 MUTATED        2      0      0      3
  GRM8 WILD-TYPE     44     58     64     40
D471V1, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM8 MUTATED        3      1      1
  GRM8 WILD-TYPE     48     82     76
D471V2, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM8 MUTATED       16      3      2      1
  GRM8 WILD-TYPE    162    180     99     19
D471V3, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM8 MUTATED       10      1      6
  GRM8 WILD-TYPE     77     79     94
D471V4, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1           10             77
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM8 MUTATED        3      6     11
  GRM8 WILD-TYPE     86    154    127
D471V5, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM8 MUTATED       11      6      3
  GRM8 WILD-TYPE    171    127     69
D471V6, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            6            127
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM8 MUTATED        2      6      9      5
  GRM8 WILD-TYPE    110     90     83    181
D471V7, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            9             83
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRM8 MUTATED        2      2      9      1      4      0      4
  GRM8 WILD-TYPE     58     48     40     39     59    125     95
D471V8, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            9             40
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM8 MUTATED        8      6      0      7
  GRM8 WILD-TYPE    122     72     68    189
D471V9, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            6             72
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GRM8 MUTATED        4      7      1      0      7      0      1      0      1
  GRM8 WILD-TYPE     36     55     27     80     62     48     42     28     73
D471V10, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            7             55
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM8 MUTATED        3      4      0      3
  GRM8 WILD-TYPE     30     27     27     16
D471V11, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            4             27
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM8 MUTATED        7      1      2      0
  GRM8 WILD-TYPE     47      9     22     22
D471V12, multiclass
        clus
vv       GRM8 MUTATED GRM8 WILD-TYPE
  CLUS_1            7             47
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(472) Variable = NTRK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK3 MUTATED        4      0      1      4
  NTRK3 WILD-TYPE     42     58     63     39
D472V1, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK3 MUTATED        4      3      2
  NTRK3 WILD-TYPE     47     80     75
D472V2, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK3 MUTATED       16      9      5      0
  NTRK3 WILD-TYPE    162    174     96     20
D472V3, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             9             174
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK3 MUTATED        5      5     11
  NTRK3 WILD-TYPE     82     75     89
D472V4, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             5              75
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK3 MUTATED        4     13     11
  NTRK3 WILD-TYPE     85    147    127
D472V5, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            13             147
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK3 MUTATED       13     11      4
  NTRK3 WILD-TYPE    169    122     68
D472V6, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1            13             169
  CLUS_2            11             122
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK3 MUTATED        8      7      6     10
  NTRK3 WILD-TYPE    104     89     86    176
D472V7, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NTRK3 MUTATED        5      2      5      7      3      2      7
  NTRK3 WILD-TYPE     55     48     44     33     60    123     92
D472V8, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             7              33
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK3 MUTATED       11      5      5     10
  NTRK3 WILD-TYPE    119     73     63    186
D472V9, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             5              73
  CLUS_3             5              63
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NTRK3 MUTATED        3      6      1      2      5      4      4      3
  NTRK3 WILD-TYPE     37     56     27     78     64     44     39     25
                 vv
clus              CLUS_9
  NTRK3 MUTATED        3
  NTRK3 WILD-TYPE     71
D472V10, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             4              44
  CLUS_7             4              39
  CLUS_8             3              25
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK3 MUTATED        2      2      2      2
  NTRK3 WILD-TYPE     31     29     25     17
D472V11, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK3 MUTATED        5      1      1      1
  NTRK3 WILD-TYPE     49      9     23     21
D472V12, multiclass
        clus
vv       NTRK3 MUTATED NTRK3 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(473) Variable = ANKRD30A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        1      0      0      2
  ANKRD30A WILD-TYPE     45     58     64     41
D473V1, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        1      1      1
  ANKRD30A WILD-TYPE     50     82     76
D473V2, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED       15     12      6      0
  ANKRD30A WILD-TYPE    163    171     95     20
D473V3, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1               15                163
  CLUS_2               12                171
  CLUS_3                6                 95
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED       10      9     10
  ANKRD30A WILD-TYPE     77     71     90
D473V4, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1               10                 77
  CLUS_2                9                 71
  CLUS_3               10                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED        2     10     15
  ANKRD30A WILD-TYPE     87    150    123
D473V5, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                2                 87
  CLUS_2               10                150
  CLUS_3               15                123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD30A MUTATED       14     12      1
  ANKRD30A WILD-TYPE    168    121     71
D473V6, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1               14                168
  CLUS_2               12                121
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED       12      9      8      4
  ANKRD30A WILD-TYPE    100     87     84    182
D473V7, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1               12                100
  CLUS_2                9                 87
  CLUS_3                8                 84
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD30A MUTATED        8      9      4      1      7      1      3
  ANKRD30A WILD-TYPE     52     41     45     39     56    124     96
D473V8, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                8                 52
  CLUS_2                9                 41
  CLUS_3                4                 45
  CLUS_4                1                 39
  CLUS_5                7                 56
  CLUS_6                1                124
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED       12      8      5      8
  ANKRD30A WILD-TYPE    118     70     63    188
D473V9, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1               12                118
  CLUS_2                8                 70
  CLUS_3                5                 63
  CLUS_4                8                188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD30A MUTATED        4      9      3      5      5      1      3      0
  ANKRD30A WILD-TYPE     36     53     25     75     64     47     40     28
                    vv
clus                 CLUS_9
  ANKRD30A MUTATED        3
  ANKRD30A WILD-TYPE     71
D473V10, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                9                 53
  CLUS_3                3                 25
  CLUS_4                5                 75
  CLUS_5                5                 64
  CLUS_6                1                 47
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        1      2      4      3
  ANKRD30A WILD-TYPE     32     29     23     16
D473V11, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 29
  CLUS_3                4                 23
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD30A MUTATED        5      2      2      1
  ANKRD30A WILD-TYPE     49      8     22     21
D473V12, multiclass
        clus
vv       ANKRD30A MUTATED ANKRD30A WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                2                  8
  CLUS_3                2                 22
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(474) Variable = MYH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH1 MUTATED        3      0      2      4
  MYH1 WILD-TYPE     43     58     62     39
D474V1, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH1 MUTATED        3      3      3
  MYH1 WILD-TYPE     48     80     74
D474V2, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            3             80
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH1 MUTATED       18      9      9      0
  MYH1 WILD-TYPE    160    174     92     20
D474V3, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            9            174
  CLUS_3            9             92
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH1 MUTATED       10      7     10
  MYH1 WILD-TYPE     77     73     90
D474V4, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1           10             77
  CLUS_2            7             73
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH1 MUTATED        5     10     14
  MYH1 WILD-TYPE     84    150    124
D474V5, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           10            150
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH1 MUTATED       16      9      4
  MYH1 WILD-TYPE    166    124     68
D474V6, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1           16            166
  CLUS_2            9            124
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH1 MUTATED        8     11      8      9
  MYH1 WILD-TYPE    104     85     84    177
D474V7, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            8            104
  CLUS_2           11             85
  CLUS_3            8             84
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH1 MUTATED        5      8      7      2      6      3      5
  MYH1 WILD-TYPE     55     42     42     38     57    122     94
D474V8, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            8             42
  CLUS_3            7             42
  CLUS_4            2             38
  CLUS_5            6             57
  CLUS_6            3            122
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH1 MUTATED       15      6      5     10
  MYH1 WILD-TYPE    115     72     63    186
D474V9, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1           15            115
  CLUS_2            6             72
  CLUS_3            5             63
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MYH1 MUTATED        4      6      2      6      9      1      5      1      2
  MYH1 WILD-TYPE     36     56     26     74     60     47     38     27     72
D474V10, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            6             74
  CLUS_5            9             60
  CLUS_6            1             47
  CLUS_7            5             38
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH1 MUTATED        3      2      3      2
  MYH1 WILD-TYPE     30     29     24     17
D474V11, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            3             24
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH1 MUTATED        3      1      4      2
  MYH1 WILD-TYPE     51      9     20     20
D474V12, multiclass
        clus
vv       MYH1 MUTATED MYH1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            4             20
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(475) Variable = PHF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        4      0      0      3
  PHF3 WILD-TYPE     42     58     64     40
D475V1, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        5      1      1
  PHF3 WILD-TYPE     46     82     76
D475V2, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED       14      5      5      1
  PHF3 WILD-TYPE    164    178     96     19
D475V3, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            5            178
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        8      3      6
  PHF3 WILD-TYPE     79     77     94
D475V4, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            3             77
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED        3      7     14
  PHF3 WILD-TYPE     86    153    124
D475V5, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF3 MUTATED       13      8      3
  PHF3 WILD-TYPE    169    125     69
D475V6, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1           13            169
  CLUS_2            8            125
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        5      1     10      9
  PHF3 WILD-TYPE    107     95     82    177
D475V7, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            1             95
  CLUS_3           10             82
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF3 MUTATED        4      3      5      0      5      0      8
  PHF3 WILD-TYPE     56     47     44     40     58    125     91
D475V8, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            3             47
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            5             58
  CLUS_6            0            125
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED       12      4      0      8
  PHF3 WILD-TYPE    118     74     68    188
D475V9, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1           12            118
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PHF3 MUTATED        2      6      3      6      5      1      0      0      1
  PHF3 WILD-TYPE     38     56     25     74     64     47     43     28     73
D475V10, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            3             25
  CLUS_4            6             74
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        1      1      2      2
  PHF3 WILD-TYPE     32     30     25     17
D475V11, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF3 MUTATED        4      0      1      1
  PHF3 WILD-TYPE     50     10     23     21
D475V12, multiclass
        clus
vv       PHF3 MUTATED PHF3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(476) Variable = PLCB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCB2 MUTATED        3      0      0      0
  PLCB2 WILD-TYPE     43     58     64     43
D476V1, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCB2 MUTATED        3      0      0
  PLCB2 WILD-TYPE     48     83     77
D476V2, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCB2 MUTATED        6      3      1      0
  PLCB2 WILD-TYPE    172    180    100     20
D476V3, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCB2 MUTATED        3      3      0
  PLCB2 WILD-TYPE     84     77    100
D476V4, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCB2 MUTATED        0      5      3
  PLCB2 WILD-TYPE     89    155    135
D476V5, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCB2 MUTATED        1      7      0
  PLCB2 WILD-TYPE    181    126     72
D476V6, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             7             126
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCB2 MUTATED        4      2      1      3
  PLCB2 WILD-TYPE    108     94     91    183
D476V7, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLCB2 MUTATED        4      3      0      0      0      0      3
  PLCB2 WILD-TYPE     56     47     49     40     63    125     96
D476V8, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCB2 MUTATED        3      1      2      4
  PLCB2 WILD-TYPE    127     77     66    192
D476V9, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLCB2 MUTATED        0      1      1      1      1      1      2      2
  PLCB2 WILD-TYPE     40     61     27     79     68     47     41     26
                 vv
clus              CLUS_9
  PLCB2 MUTATED        1
  PLCB2 WILD-TYPE     73
D476V10, multiclass
        clus
vv       PLCB2 MUTATED PLCB2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCB2 MUTATED        0      0      0      1
  PLCB2 WILD-TYPE     33     31     27     18
D476V11, multiclass
[1] "Remove cluster labels:" "PLCB2 MUTATED"         
clus
  PLCB2 MUTATED PLCB2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-G5-6641 
"PLCB2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCB2 MUTATED        1      0      0      0
  PLCB2 WILD-TYPE     53     10     24     22
D476V12, multiclass
[1] "Remove cluster labels:" "PLCB2 MUTATED"         
clus
  PLCB2 MUTATED PLCB2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" "PLCB2 WILD-TYPE" 
     TCGA-G5-6641 
"PLCB2 WILD-TYPE" 

Clustering(477) Variable = PTPRD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRD MUTATED        6      1      0      3
  PTPRD WILD-TYPE     40     57     64     40
D477V1, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             6              40
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRD MUTATED        6      3      1
  PTPRD WILD-TYPE     45     80     76
D477V2, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             6              45
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRD MUTATED       17     11      8      2
  PTPRD WILD-TYPE    161    172     93     18
D477V3, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1            17             161
  CLUS_2            11             172
  CLUS_3             8              93
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRD MUTATED       10      7     11
  PTPRD WILD-TYPE     77     73     89
D477V4, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1            10              77
  CLUS_2             7              73
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRD MUTATED        5      9     16
  PTPRD WILD-TYPE     84    151    122
D477V5, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             5              84
  CLUS_2             9             151
  CLUS_3            16             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRD MUTATED       16      8      6
  PTPRD WILD-TYPE    166    125     66
D477V6, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1            16             166
  CLUS_2             8             125
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRD MUTATED       13      9      6     10
  PTPRD WILD-TYPE     99     87     86    176
D477V7, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1            13              99
  CLUS_2             9              87
  CLUS_3             6              86
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRD MUTATED        6      7      8      4      3      3      7
  PTPRD WILD-TYPE     54     43     41     36     60    122     92
D477V8, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             6              54
  CLUS_2             7              43
  CLUS_3             8              41
  CLUS_4             4              36
  CLUS_5             3              60
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRD MUTATED       17      5      3     12
  PTPRD WILD-TYPE    113     73     65    184
D477V9, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1            17             113
  CLUS_2             5              73
  CLUS_3             3              65
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRD MUTATED        4      5      7      6      9      1      3      2
  PTPRD WILD-TYPE     36     57     21     74     60     47     40     26
                 vv
clus              CLUS_9
  PTPRD MUTATED        0
  PTPRD WILD-TYPE     74
D477V10, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             4              36
  CLUS_2             5              57
  CLUS_3             7              21
  CLUS_4             6              74
  CLUS_5             9              60
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRD MUTATED        4      1      1      0
  PTPRD WILD-TYPE     29     30     26     19
D477V11, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRD MUTATED        4      0      1      1
  PTPRD WILD-TYPE     50     10     23     21
D477V12, multiclass
        clus
vv       PTPRD MUTATED PTPRD WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(478) Variable = CSMD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       10      4      4     10
  CSMD3 WILD-TYPE     36     54     60     33
D478V1, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            10              36
  CLUS_2             4              54
  CLUS_3             4              60
  CLUS_4            10              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       15      9      4
  CSMD3 WILD-TYPE     36     74     73
D478V2, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            15              36
  CLUS_2             9              74
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       51     26     26      3
  CSMD3 WILD-TYPE    127    157     75     17
D478V3, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            51             127
  CLUS_2            26             157
  CLUS_3            26              75
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       26     19     34
  CSMD3 WILD-TYPE     61     61     66
D478V4, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            26              61
  CLUS_2            19              61
  CLUS_3            34              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       14     31     43
  CSMD3 WILD-TYPE     75    129     95
D478V5, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            14              75
  CLUS_2            31             129
  CLUS_3            43              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSMD3 MUTATED       44     29     15
  CSMD3 WILD-TYPE    138    104     57
D478V6, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            44             138
  CLUS_2            29             104
  CLUS_3            15              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       26     31     22     29
  CSMD3 WILD-TYPE     86     65     70    157
D478V7, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            26              86
  CLUS_2            31              65
  CLUS_3            22              70
  CLUS_4            29             157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSMD3 MUTATED       18     15     21     10     12     10     22
  CSMD3 WILD-TYPE     42     35     28     30     51    115     77
D478V8, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            18              42
  CLUS_2            15              35
  CLUS_3            21              28
  CLUS_4            10              30
  CLUS_5            12              51
  CLUS_6            10             115
  CLUS_7            22              77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       34     20     18     33
  CSMD3 WILD-TYPE     96     58     50    163
D478V9, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            34              96
  CLUS_2            20              58
  CLUS_3            18              50
  CLUS_4            33             163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSMD3 MUTATED        7     18     10     21     22      6     11      1
  CSMD3 WILD-TYPE     33     44     18     59     47     42     32     27
                 vv
clus              CLUS_9
  CSMD3 MUTATED        9
  CSMD3 WILD-TYPE     65
D478V10, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             7              33
  CLUS_2            18              44
  CLUS_3            10              18
  CLUS_4            21              59
  CLUS_5            22              47
  CLUS_6             6              42
  CLUS_7            11              32
  CLUS_8             1              27
  CLUS_9             9              65
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       10      8      8      8
  CSMD3 WILD-TYPE     23     23     19     11
D478V11, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            10              23
  CLUS_2             8              23
  CLUS_3             8              19
  CLUS_4             8              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSMD3 MUTATED       15      3      8      8
  CSMD3 WILD-TYPE     39      7     16     14
D478V12, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            15              39
  CLUS_2             3               7
  CLUS_3             8              16
  CLUS_4             8              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(479) Variable = USH2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USH2A MUTATED        8      4      3     12
  USH2A WILD-TYPE     38     54     61     31
D479V1, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1             8              38
  CLUS_2             4              54
  CLUS_3             3              61
  CLUS_4            12              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USH2A MUTATED       13      8      6
  USH2A WILD-TYPE     38     75     71
D479V2, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            13              38
  CLUS_2             8              75
  CLUS_3             6              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USH2A MUTATED       46     24     12      5
  USH2A WILD-TYPE    132    159     89     15
D479V3, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            46             132
  CLUS_2            24             159
  CLUS_3            12              89
  CLUS_4             5              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USH2A MUTATED       24     11     26
  USH2A WILD-TYPE     63     69     74
D479V4, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            24              63
  CLUS_2            11              69
  CLUS_3            26              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USH2A MUTATED       11     27     31
  USH2A WILD-TYPE     78    133    107
D479V5, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            11              78
  CLUS_2            27             133
  CLUS_3            31             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USH2A MUTATED       35     21     13
  USH2A WILD-TYPE    147    112     59
D479V6, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            35             147
  CLUS_2            21             112
  CLUS_3            13              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USH2A MUTATED       17     28     19     24
  USH2A WILD-TYPE     95     68     73    162
D479V7, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            17              95
  CLUS_2            28              68
  CLUS_3            19              73
  CLUS_4            24             162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USH2A MUTATED       15     12     15     11      8      8     19
  USH2A WILD-TYPE     45     38     34     29     55    117     80
D479V8, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            15              45
  CLUS_2            12              38
  CLUS_3            15              34
  CLUS_4            11              29
  CLUS_5             8              55
  CLUS_6             8             117
  CLUS_7            19              80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USH2A MUTATED       33     15     11     25
  USH2A WILD-TYPE     97     63     57    171
D479V9, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            33              97
  CLUS_2            15              63
  CLUS_3            11              57
  CLUS_4            25             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USH2A MUTATED       10     13      8     10     17      7     11      2
  USH2A WILD-TYPE     30     49     20     70     52     41     32     26
                 vv
clus              CLUS_9
  USH2A MUTATED        6
  USH2A WILD-TYPE     68
D479V10, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            10              30
  CLUS_2            13              49
  CLUS_3             8              20
  CLUS_4            10              70
  CLUS_5            17              52
  CLUS_6             7              41
  CLUS_7            11              32
  CLUS_8             2              26
  CLUS_9             6              68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USH2A MUTATED        9      6      6      5
  USH2A WILD-TYPE     24     25     21     14
D479V11, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1             9              24
  CLUS_2             6              25
  CLUS_3             6              21
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USH2A MUTATED       17      1      4      4
  USH2A WILD-TYPE     37      9     20     18
D479V12, multiclass
        clus
vv       USH2A MUTATED USH2A WILD-TYPE
  CLUS_1            17              37
  CLUS_2             1               9
  CLUS_3             4              20
  CLUS_4             4              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(480) Variable = MYEOV MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        1      0      0      0
  MYEOV WILD-TYPE     45     58     64     43
D480V1, multiclass
[1] "Remove cluster labels:" "MYEOV MUTATED"         
clus
  MYEOV MUTATED MYEOV WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00F      TCGA-AA-A00J 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        1      0      0
  MYEOV WILD-TYPE     50     83     77
D480V2, multiclass
[1] "Remove cluster labels:" "MYEOV MUTATED"         
clus
  MYEOV MUTATED MYEOV WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00F      TCGA-AA-A00J 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        5      1      1      0
  MYEOV WILD-TYPE    173    182    100     20
D480V3, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        1      1      4
  MYEOV WILD-TYPE     86     79     96
D480V4, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        0      4      3
  MYEOV WILD-TYPE     89    156    135
D480V5, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        3      4      0
  MYEOV WILD-TYPE    179    129     72
D480V6, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        1      3      2      1
  MYEOV WILD-TYPE    111     93     90    185
D480V7, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYEOV MUTATED        1      0      4      0      1      0      1
  MYEOV WILD-TYPE     59     50     45     40     62    125     98
D480V8, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        5      0      0      1
  MYEOV WILD-TYPE    125     78     68    195
D480V9, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYEOV MUTATED        1      1      0      0      3      1      0      0
  MYEOV WILD-TYPE     39     61     28     80     66     47     43     28
                 vv
clus              CLUS_9
  MYEOV MUTATED        0
  MYEOV WILD-TYPE     74
D480V10, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        0      0      0      1
  MYEOV WILD-TYPE     33     31     27     18
D480V11, multiclass
[1] "Remove cluster labels:" "MYEOV MUTATED"         
clus
  MYEOV MUTATED MYEOV WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-G5-6641 
"MYEOV WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        0      0      1      0
  MYEOV WILD-TYPE     54     10     23     22
D480V12, multiclass
[1] "Remove cluster labels:" "MYEOV MUTATED"         
clus
  MYEOV MUTATED MYEOV WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" "MYEOV WILD-TYPE" 
     TCGA-G5-6641 
"MYEOV WILD-TYPE" 

Clustering(481) Variable = BRE MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRE MUTATED        2      0      1      0
  BRE WILD-TYPE     44     58     63     43
D481V1, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           0            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BRE MUTATED        2      0      1
  BRE WILD-TYPE     49     83     76
D481V2, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           2            49
  CLUS_2           0            83
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRE MUTATED        8      3      0      0
  BRE WILD-TYPE    170    180    101     20
D481V3, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           8           170
  CLUS_2           3           180
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BRE MUTATED        1      1      7
  BRE WILD-TYPE     86     79     93
D481V4, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           1            86
  CLUS_2           1            79
  CLUS_3           7            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BRE MUTATED        1      7      3
  BRE WILD-TYPE     88    153    135
D481V5, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           1            88
  CLUS_2           7           153
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BRE MUTATED        5      5      1
  BRE WILD-TYPE    177    128     71
D481V6, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           5           177
  CLUS_2           5           128
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRE MUTATED        1      6      1      4
  BRE WILD-TYPE    111     90     91    182
D481V7, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           1           111
  CLUS_2           6            90
  CLUS_3           1            91
  CLUS_4           4           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRE MUTATED        2      2      3      0      0      2      3
  BRE WILD-TYPE     58     48     46     40     63    123     96
D481V8, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           2            58
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           2           123
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRE MUTATED        6      0      0      6
  BRE WILD-TYPE    124     78     68    190
D481V9, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           6           124
  CLUS_2           0            78
  CLUS_3           0            68
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BRE MUTATED        1      0      2      2      5      1      1      0      0
  BRE WILD-TYPE     39     62     26     78     64     47     42     28     74
D481V10, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           1            39
  CLUS_2           0            62
  CLUS_3           2            26
  CLUS_4           2            78
  CLUS_5           5            64
  CLUS_6           1            47
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRE MUTATED        2      0      0      1
  BRE WILD-TYPE     31     31     27     18
D481V11, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRE MUTATED        1      0      1      1
  BRE WILD-TYPE     53     10     23     21
D481V12, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           1            53
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(482) Variable = SCN3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN3A MUTATED        7      1      0      5
  SCN3A WILD-TYPE     39     57     64     38
D482V1, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             7              39
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN3A MUTATED        9      3      1
  SCN3A WILD-TYPE     42     80     76
D482V2, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             9              42
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN3A MUTATED       31     10      8      0
  SCN3A WILD-TYPE    147    173     93     20
D482V3, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1            31             147
  CLUS_2            10             173
  CLUS_3             8              93
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN3A MUTATED       12      9     15
  SCN3A WILD-TYPE     75     71     85
D482V4, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1            12              75
  CLUS_2             9              71
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN3A MUTATED        7     19     17
  SCN3A WILD-TYPE     82    141    121
D482V5, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             7              82
  CLUS_2            19             141
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN3A MUTATED       19     19      5
  SCN3A WILD-TYPE    163    114     67
D482V6, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1            19             163
  CLUS_2            19             114
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN3A MUTATED       13     15      7     14
  SCN3A WILD-TYPE     99     81     85    172
D482V7, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1            13              99
  CLUS_2            15              81
  CLUS_3             7              85
  CLUS_4            14             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCN3A MUTATED        7      7      7      5      8      3     12
  SCN3A WILD-TYPE     53     43     42     35     55    122     87
D482V8, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             7              53
  CLUS_2             7              43
  CLUS_3             7              42
  CLUS_4             5              35
  CLUS_5             8              55
  CLUS_6             3             122
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN3A MUTATED       18     10      6     14
  SCN3A WILD-TYPE    112     68     62    182
D482V9, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1            18             112
  CLUS_2            10              68
  CLUS_3             6              62
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SCN3A MUTATED        8      9      2      8     10      1      4      2
  SCN3A WILD-TYPE     32     53     26     72     59     47     39     26
                 vv
clus              CLUS_9
  SCN3A MUTATED        4
  SCN3A WILD-TYPE     70
D482V10, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             8              32
  CLUS_2             9              53
  CLUS_3             2              26
  CLUS_4             8              72
  CLUS_5            10              59
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             2              26
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN3A MUTATED        4      3      3      2
  SCN3A WILD-TYPE     29     28     24     17
D482V11, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             4              29
  CLUS_2             3              28
  CLUS_3             3              24
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN3A MUTATED        6      1      1      4
  SCN3A WILD-TYPE     48      9     23     18
D482V12, multiclass
        clus
vv       SCN3A MUTATED SCN3A WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             4              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(483) Variable = FKTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKTN MUTATED        2      0      0      2
  FKTN WILD-TYPE     44     58     64     41
D483V1, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FKTN MUTATED        2      1      1
  FKTN WILD-TYPE     49     82     76
D483V2, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKTN MUTATED        7      1      0      1
  FKTN WILD-TYPE    171    182    101     19
D483V3, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FKTN MUTATED        1      1      3
  FKTN WILD-TYPE     86     79     97
D483V4, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FKTN MUTATED        0      5      4
  FKTN WILD-TYPE     89    155    134
D483V5, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FKTN MUTATED        3      4      2
  FKTN WILD-TYPE    179    129     70
D483V6, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKTN MUTATED        1      4      0      4
  FKTN WILD-TYPE    111     92     92    182
D483V7, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            0             92
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FKTN MUTATED        2      2      2      0      0      0      3
  FKTN WILD-TYPE     58     48     47     40     63    125     96
D483V8, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKTN MUTATED        4      0      0      5
  FKTN WILD-TYPE    126     78     68    191
D483V9, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FKTN MUTATED        0      0      1      1      4      0      2      0      1
  FKTN WILD-TYPE     40     62     27     79     65     48     41     28     73
D483V10, multiclass
        clus
vv       FKTN MUTATED FKTN WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKTN MUTATED        0      0      0      0
  FKTN WILD-TYPE     33     31     27     19
D483V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKTN MUTATED        0      0      0      0
  FKTN WILD-TYPE     54     10     24     22
D483V12, multiclass

Clustering(484) Variable = MIER1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER1 MUTATED        0      0      0      2
  MIER1 WILD-TYPE     46     58     64     41
D484V1, multiclass
[1] "Remove cluster labels:" "MIER1 MUTATED"         
clus
  MIER1 MUTATED MIER1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AY-4071 
"MIER1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER1 MUTATED        0      1      1
  MIER1 WILD-TYPE     51     82     76
D484V2, multiclass
[1] "Remove cluster labels:" "MIER1 MUTATED"         
clus
  MIER1 MUTATED MIER1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AY-4071 
"MIER1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER1 MUTATED        4      3      0      0
  MIER1 WILD-TYPE    174    180    101     20
D484V3, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER1 MUTATED        1      1      4
  MIER1 WILD-TYPE     86     79     96
D484V4, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER1 MUTATED        2      4      2
  MIER1 WILD-TYPE     87    156    136
D484V5, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIER1 MUTATED        3      5      0
  MIER1 WILD-TYPE    179    128     72
D484V6, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER1 MUTATED        4      1      1      2
  MIER1 WILD-TYPE    108     95     91    184
D484V7, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIER1 MUTATED        3      1      1      0      2      0      1
  MIER1 WILD-TYPE     57     49     48     40     61    125     98
D484V8, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER1 MUTATED        3      1      1      3
  MIER1 WILD-TYPE    127     77     67    193
D484V9, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MIER1 MUTATED        0      1      2      2      2      0      1      0
  MIER1 WILD-TYPE     40     61     26     78     67     48     42     28
                 vv
clus              CLUS_9
  MIER1 MUTATED        0
  MIER1 WILD-TYPE     74
D484V10, multiclass
        clus
vv       MIER1 MUTATED MIER1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER1 MUTATED        0      0      2      0
  MIER1 WILD-TYPE     33     31     25     19
D484V11, multiclass
[1] "Remove cluster labels:" "MIER1 MUTATED"         
clus
  MIER1 MUTATED MIER1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DY-A1DC 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIER1 MUTATED        0      0      1      1
  MIER1 WILD-TYPE     54     10     23     21
D484V12, multiclass
[1] "Remove cluster labels:" "MIER1 MUTATED"         
clus
  MIER1 MUTATED MIER1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DY-A1DC 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" "MIER1 WILD-TYPE" 

Clustering(485) Variable = KIRREL2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        1      1      1      2
  KIRREL2 WILD-TYPE     45     57     63     41
D485V1, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED        2      2      1
  KIRREL2 WILD-TYPE     49     81     76
D485V2, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED       12      3      0      0
  KIRREL2 WILD-TYPE    166    180    101     20
D485V3, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED        2      2      6
  KIRREL2 WILD-TYPE     85     78     94
D485V4, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED        2      4      8
  KIRREL2 WILD-TYPE     87    156    130
D485V5, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED        9      3      2
  KIRREL2 WILD-TYPE    173    130     70
D485V6, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        1      5      4      5
  KIRREL2 WILD-TYPE    111     91     88    181
D485V7, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIRREL2 MUTATED        1      0      8      0      1      2      3
  KIRREL2 WILD-TYPE     59     50     41     40     62    123     96
D485V8, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               8                41
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        8      1      1      5
  KIRREL2 WILD-TYPE    122     77     67    191
D485V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIRREL2 MUTATED        1      3      1      0      7      2      0      0
  KIRREL2 WILD-TYPE     39     59     27     80     62     46     43     28
                   vv
clus                CLUS_9
  KIRREL2 MUTATED        1
  KIRREL2 WILD-TYPE     73
D485V10, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               7                62
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        2      1      0      1
  KIRREL2 WILD-TYPE     31     30     27     18
D485V11, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        3      0      0      1
  KIRREL2 WILD-TYPE     51     10     24     21
D485V12, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(486) Variable = PAK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED        2      1      0      2
  PAK3 WILD-TYPE     44     57     64     41
D486V1, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK3 MUTATED        2      1      2
  PAK3 WILD-TYPE     49     82     75
D486V2, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED       12      4      4      0
  PAK3 WILD-TYPE    166    179     97     20
D486V3, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            4            179
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK3 MUTATED        6      1      8
  PAK3 WILD-TYPE     81     79     92
D486V4, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK3 MUTATED        4      4      9
  PAK3 WILD-TYPE     85    156    129
D486V5, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            4            156
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK3 MUTATED        9      5      3
  PAK3 WILD-TYPE    173    128     69
D486V6, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED        2      7      6      5
  PAK3 WILD-TYPE    110     89     86    181
D486V7, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            7             89
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK3 MUTATED        2      2      7      1      3      1      4
  PAK3 WILD-TYPE     58     48     42     39     60    124     95
D486V8, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            7             42
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED       10      2      2      6
  PAK3 WILD-TYPE    120     76     66    190
D486V9, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAK3 MUTATED        2      4      1      1      7      0      3      0      2
  PAK3 WILD-TYPE     38     58     27     79     62     48     40     28     72
D486V10, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED        2      1      0      2
  PAK3 WILD-TYPE     31     30     27     17
D486V11, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK3 MUTATED        4      0      0      1
  PAK3 WILD-TYPE     50     10     24     21
D486V12, multiclass
        clus
vv       PAK3 MUTATED PAK3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(487) Variable = RAF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAF1 MUTATED        1      0      1      2
  RAF1 WILD-TYPE     45     58     63     41
D487V1, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAF1 MUTATED        2      1      1
  RAF1 WILD-TYPE     49     82     76
D487V2, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAF1 MUTATED       10      1      4      0
  RAF1 WILD-TYPE    168    182     97     20
D487V3, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            1            182
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAF1 MUTATED        5      1      4
  RAF1 WILD-TYPE     82     79     96
D487V4, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAF1 MUTATED        1      6      6
  RAF1 WILD-TYPE     88    154    132
D487V5, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAF1 MUTATED        6      6      1
  RAF1 WILD-TYPE    176    127     71
D487V6, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAF1 MUTATED        2      5      2      6
  RAF1 WILD-TYPE    110     91     90    180
D487V7, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAF1 MUTATED        2      5      1      0      1      1      5
  RAF1 WILD-TYPE     58     45     48     40     62    124     94
D487V8, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            5             45
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAF1 MUTATED        5      1      1      7
  RAF1 WILD-TYPE    125     77     67    189
D487V9, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RAF1 MUTATED        0      3      1      3      3      1      1      0      2
  RAF1 WILD-TYPE     40     59     27     77     66     47     42     28     72
D487V10, multiclass
        clus
vv       RAF1 MUTATED RAF1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAF1 MUTATED        0      0      1      0
  RAF1 WILD-TYPE     33     31     26     19
D487V11, multiclass
[1] "Remove cluster labels:" "RAF1 MUTATED"          
clus
  RAF1 MUTATED RAF1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-G5-6641 
"RAF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAF1 MUTATED        0      0      1      0
  RAF1 WILD-TYPE     54     10     23     22
D487V12, multiclass
[1] "Remove cluster labels:" "RAF1 MUTATED"          
clus
  RAF1 MUTATED RAF1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" "RAF1 WILD-TYPE" 
    TCGA-G5-6641 
"RAF1 WILD-TYPE" 

Clustering(488) Variable = ASNSD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASNSD1 MUTATED        3      0      0      1
  ASNSD1 WILD-TYPE     43     58     64     42
D488V1, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ASNSD1 MUTATED        3      1      0
  ASNSD1 WILD-TYPE     48     82     77
D488V2, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASNSD1 MUTATED        8      1      0      1
  ASNSD1 WILD-TYPE    170    182    101     19
D488V3, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ASNSD1 MUTATED        5      0      1
  ASNSD1 WILD-TYPE     82     80     99
D488V4, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ASNSD1 MUTATED        3      2      3
  ASNSD1 WILD-TYPE     86    158    135
D488V5, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ASNSD1 MUTATED        2      3      3
  ASNSD1 WILD-TYPE    180    130     69
D488V6, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASNSD1 MUTATED        0      1      4      5
  ASNSD1 WILD-TYPE    112     95     88    181
D488V7, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASNSD1 MUTATED        0      1      2      0      2      1      4
  ASNSD1 WILD-TYPE     60     49     47     40     61    124     95
D488V8, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASNSD1 MUTATED        1      3      0      6
  ASNSD1 WILD-TYPE    129     75     68    190
D488V9, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ASNSD1 MUTATED        1      2      0      3      3      0      0      0
  ASNSD1 WILD-TYPE     39     60     28     77     66     48     43     28
                  vv
clus               CLUS_9
  ASNSD1 MUTATED        1
  ASNSD1 WILD-TYPE     73
D488V10, multiclass
        clus
vv       ASNSD1 MUTATED ASNSD1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASNSD1 MUTATED        2      0      0      0
  ASNSD1 WILD-TYPE     31     31     27     19
D488V11, multiclass
[1] "Remove cluster labels:" "ASNSD1 MUTATED"        
clus
  ASNSD1 MUTATED ASNSD1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASNSD1 MUTATED        2      0      0      0
  ASNSD1 WILD-TYPE     52     10     24     22
D488V12, multiclass
[1] "Remove cluster labels:" "ASNSD1 MUTATED"        
clus
  ASNSD1 MUTATED ASNSD1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" "ASNSD1 WILD-TYPE" 

Clustering(489) Variable = ABCC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        2      1      1      2
  ABCC4 WILD-TYPE     44     57     63     41
D489V1, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED        2      3      1
  ABCC4 WILD-TYPE     49     80     76
D489V2, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED       14      3      3      0
  ABCC4 WILD-TYPE    164    180     98     20
D489V3, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED        5      2      5
  ABCC4 WILD-TYPE     82     78     95
D489V4, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED        3      5      9
  ABCC4 WILD-TYPE     86    155    129
D489V5, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED        9      7      1
  ABCC4 WILD-TYPE    173    126     71
D489V6, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        5      5      4      6
  ABCC4 WILD-TYPE    107     91     88    180
D489V7, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCC4 MUTATED        2      4      4      0      2      3      5
  ABCC4 WILD-TYPE     58     46     45     40     61    122     94
D489V8, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        6      3      1      9
  ABCC4 WILD-TYPE    124     75     67    187
D489V9, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABCC4 MUTATED        1      4      1      5      5      0      1      0
  ABCC4 WILD-TYPE     39     58     27     75     64     48     42     28
                 vv
clus              CLUS_9
  ABCC4 MUTATED        2
  ABCC4 WILD-TYPE     72
D489V10, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             5              75
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        1      1      1      1
  ABCC4 WILD-TYPE     32     30     26     18
D489V11, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        3      0      1      0
  ABCC4 WILD-TYPE     51     10     23     22
D489V12, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(490) Variable = CYLC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLC1 MUTATED        2      0      1      3
  CYLC1 WILD-TYPE     44     58     63     40
D490V1, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYLC1 MUTATED        2      1      3
  CYLC1 WILD-TYPE     49     82     74
D490V2, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLC1 MUTATED       20     10      4      0
  CYLC1 WILD-TYPE    158    173     97     20
D490V3, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1            20             158
  CLUS_2            10             173
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYLC1 MUTATED        7      6     15
  CYLC1 WILD-TYPE     80     74     85
D490V4, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             6              74
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYLC1 MUTATED        3     14     13
  CYLC1 WILD-TYPE     86    146    125
D490V5, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            14             146
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYLC1 MUTATED       15     12      3
  CYLC1 WILD-TYPE    167    121     69
D490V6, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1            15             167
  CLUS_2            12             121
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLC1 MUTATED        7      9     13      5
  CYLC1 WILD-TYPE    105     87     79    181
D490V7, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             7             105
  CLUS_2             9              87
  CLUS_3            13              79
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYLC1 MUTATED        6      3     10      5      5      0      5
  CYLC1 WILD-TYPE     54     47     39     35     58    125     94
D490V8, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             3              47
  CLUS_3            10              39
  CLUS_4             5              35
  CLUS_5             5              58
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLC1 MUTATED       14      5      5     10
  CYLC1 WILD-TYPE    116     73     63    186
D490V9, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1            14             116
  CLUS_2             5              73
  CLUS_3             5              63
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYLC1 MUTATED        2      5      3      3      8      4      6      2
  CYLC1 WILD-TYPE     38     57     25     77     61     44     37     26
                 vv
clus              CLUS_9
  CYLC1 MUTATED        1
  CYLC1 WILD-TYPE     73
D490V10, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             8              61
  CLUS_6             4              44
  CLUS_7             6              37
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLC1 MUTATED        4      3      2      5
  CYLC1 WILD-TYPE     29     28     25     14
D490V11, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYLC1 MUTATED        8      0      4      2
  CYLC1 WILD-TYPE     46     10     20     20
D490V12, multiclass
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  CLUS_1             8              46
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(491) Variable = RNF111 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        4      0      0      3
  RNF111 WILD-TYPE     42     58     64     40
D491V1, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        5      0      2
  RNF111 WILD-TYPE     46     83     75
D491V2, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED       11      3      1      0
  RNF111 WILD-TYPE    167    180    100     20
D491V3, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        4      3      3
  RNF111 WILD-TYPE     83     77     97
D491V4, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        1      5      9
  RNF111 WILD-TYPE     88    155    129
D491V5, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        6      6      3
  RNF111 WILD-TYPE    176    127     69
D491V6, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        3      3      3      7
  RNF111 WILD-TYPE    109     93     89    179
D491V7, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF111 MUTATED        2      4      3      0      1      0      6
  RNF111 WILD-TYPE     58     46     46     40     62    125     93
D491V8, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        3      3      1      8
  RNF111 WILD-TYPE    127     75     67    188
D491V9, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF111 MUTATED        1      4      2      3      3      0      1      0
  RNF111 WILD-TYPE     39     58     26     77     66     48     42     28
                  vv
clus               CLUS_9
  RNF111 MUTATED        1
  RNF111 WILD-TYPE     73
D491V10, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        1      0      0      1
  RNF111 WILD-TYPE     32     31     27     18
D491V11, multiclass
[1] "Remove cluster labels:" "RNF111 MUTATED"        
clus
  RNF111 MUTATED RNF111 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        2      0      0      0
  RNF111 WILD-TYPE     52     10     24     22
D491V12, multiclass
[1] "Remove cluster labels:" "RNF111 MUTATED"        
clus
  RNF111 MUTATED RNF111 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" "RNF111 WILD-TYPE" 

Clustering(492) Variable = CLIP4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP4 MUTATED        3      0      0      2
  CLIP4 WILD-TYPE     43     58     64     41
D492V1, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP4 MUTATED        4      1      0
  CLIP4 WILD-TYPE     47     82     77
D492V2, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP4 MUTATED        9      3      1      0
  CLIP4 WILD-TYPE    169    180    100     20
D492V3, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP4 MUTATED        2      0      5
  CLIP4 WILD-TYPE     85     80     95
D492V4, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP4 MUTATED        1      5      4
  CLIP4 WILD-TYPE     88    155    134
D492V5, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP4 MUTATED        6      4      0
  CLIP4 WILD-TYPE    176    129     72
D492V6, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP4 MUTATED        0      5      2      7
  CLIP4 WILD-TYPE    112     91     90    179
D492V7, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLIP4 MUTATED        1      3      2      0      0      2      6
  CLIP4 WILD-TYPE     59     47     47     40     63    123     93
D492V8, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP4 MUTATED        4      1      1      7
  CLIP4 WILD-TYPE    126     77     67    189
D492V9, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLIP4 MUTATED        1      0      0      3      5      0      2      0
  CLIP4 WILD-TYPE     39     62     28     77     64     48     41     28
                 vv
clus              CLUS_9
  CLIP4 MUTATED        2
  CLIP4 WILD-TYPE     72
D492V10, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP4 MUTATED        2      0      0      1
  CLIP4 WILD-TYPE     31     31     27     18
D492V11, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP4 MUTATED        2      0      1      0
  CLIP4 WILD-TYPE     52     10     23     22
D492V12, multiclass
        clus
vv       CLIP4 MUTATED CLIP4 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(493) Variable = SULT6B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT6B1 MUTATED        1      0      0      2
  SULT6B1 WILD-TYPE     45     58     64     41
D493V1, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT6B1 MUTATED        0      2      1
  SULT6B1 WILD-TYPE     51     81     76
D493V2, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT6B1 MUTATED        6      2      2      2
  SULT6B1 WILD-TYPE    172    181     99     18
D493V3, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT6B1 MUTATED        6      2      1
  SULT6B1 WILD-TYPE     81     78     99
D493V4, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT6B1 MUTATED        3      5      3
  SULT6B1 WILD-TYPE     86    155    135
D493V5, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               5               155
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT6B1 MUTATED        4      6      1
  SULT6B1 WILD-TYPE    178    127     71
D493V6, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               6               127
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT6B1 MUTATED        3      3      2      4
  SULT6B1 WILD-TYPE    109     93     90    182
D493V7, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SULT6B1 MUTATED        3      1      2      2      1      1      2
  SULT6B1 WILD-TYPE     57     49     47     38     62    124     97
D493V8, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT6B1 MUTATED        4      2      1      5
  SULT6B1 WILD-TYPE    126     76     67    191
D493V9, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SULT6B1 MUTATED        2      1      2      2      2      1      0      0
  SULT6B1 WILD-TYPE     38     61     26     78     67     47     43     28
                   vv
clus                CLUS_9
  SULT6B1 MUTATED        2
  SULT6B1 WILD-TYPE     72
D493V10, multiclass
        clus
vv       SULT6B1 MUTATED SULT6B1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT6B1 MUTATED        1      1      0      0
  SULT6B1 WILD-TYPE     32     30     27     19
D493V11, multiclass
[1] "Remove cluster labels:" "SULT6B1 MUTATED"       
clus
  SULT6B1 MUTATED SULT6B1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-5403 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT6B1 MUTATED        1      0      0      1
  SULT6B1 WILD-TYPE     53     10     24     21
D493V12, multiclass
[1] "Remove cluster labels:" "SULT6B1 MUTATED"       
clus
  SULT6B1 MUTATED SULT6B1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-5403 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" "SULT6B1 WILD-TYPE" 

Clustering(494) Variable = PLA2G4E MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G4E MUTATED        0      0      0      1
  PLA2G4E WILD-TYPE     46     58     64     42
D494V1, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G4E MUTATED        0      0      1
  PLA2G4E WILD-TYPE     51     83     76
D494V2, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G4E MUTATED        8      2      1      0
  PLA2G4E WILD-TYPE    170    181    100     20
D494V3, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               8               170
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G4E MUTATED        2      2      6
  PLA2G4E WILD-TYPE     85     78     94
D494V4, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G4E MUTATED        1      4      5
  PLA2G4E WILD-TYPE     88    156    133
D494V5, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G4E MUTATED        4      4      2
  PLA2G4E WILD-TYPE    178    129     70
D494V6, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G4E MUTATED        2      5      3      1
  PLA2G4E WILD-TYPE    110     91     89    185
D494V7, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               2               110
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLA2G4E MUTATED        1      4      4      1      1      0      0
  PLA2G4E WILD-TYPE     59     46     45     39     62    125     99
D494V8, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               1                59
  CLUS_2               4                46
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G4E MUTATED        7      1      0      3
  PLA2G4E WILD-TYPE    123     77     68    193
D494V9, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               7               123
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLA2G4E MUTATED        2      3      1      2      3      0      0      0
  PLA2G4E WILD-TYPE     38     59     27     78     66     48     43     28
                   vv
clus                CLUS_9
  PLA2G4E MUTATED        0
  PLA2G4E WILD-TYPE     74
D494V10, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G4E MUTATED        0      0      0      2
  PLA2G4E WILD-TYPE     33     31     27     17
D494V11, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G4E MUTATED        1      0      1      0
  PLA2G4E WILD-TYPE     53     10     23     22
D494V12, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 

Clustering(495) Variable = CLCNKA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKA MUTATED        1      0      0      0
  CLCNKA WILD-TYPE     45     58     64     43
D495V1, multiclass
[1] "Remove cluster labels:" "CLCNKA MUTATED"        
clus
  CLCNKA MUTATED CLCNKA WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKA MUTATED        1      0      0
  CLCNKA WILD-TYPE     50     83     77
D495V2, multiclass
[1] "Remove cluster labels:" "CLCNKA MUTATED"        
clus
  CLCNKA MUTATED CLCNKA WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CLCNKA WILD-TYPE" "CLCNKA WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKA MUTATED        7      1      1      1
  CLCNKA WILD-TYPE    171    182    100     19
D495V3, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKA MUTATED        2      1      6
  CLCNKA WILD-TYPE     85     79     94
D495V4, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKA MUTATED        1      4      3
  CLCNKA WILD-TYPE     88    156    135
D495V5, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKA MUTATED        3      4      1
  CLCNKA WILD-TYPE    179    129     71
D495V6, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              3              179
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKA MUTATED        2      6      1      1
  CLCNKA WILD-TYPE    110     90     91    185
D495V7, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLCNKA MUTATED        2      1      6      0      0      0      1
  CLCNKA WILD-TYPE     58     49     43     40     63    125     98
D495V8, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKA MUTATED        6      1      1      2
  CLCNKA WILD-TYPE    124     77     67    194
D495V9, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLCNKA MUTATED        1      1      0      0      3      1      3      1
  CLCNKA WILD-TYPE     39     61     28     80     66     47     40     27
                  vv
clus               CLUS_9
  CLCNKA MUTATED        0
  CLCNKA WILD-TYPE     74
D495V10, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKA MUTATED        0      0      1      2
  CLCNKA WILD-TYPE     33     31     26     17
D495V11, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKA MUTATED        1      0      1      1
  CLCNKA WILD-TYPE     53     10     23     21
D495V12, multiclass
        clus
vv       CLCNKA MUTATED CLCNKA WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(496) Variable = ERCC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6 MUTATED        3      2      0      4
  ERCC6 WILD-TYPE     43     56     64     39
D496V1, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC6 MUTATED        5      2      2
  ERCC6 WILD-TYPE     46     81     75
D496V2, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6 MUTATED       22      9      2      0
  ERCC6 WILD-TYPE    156    174     99     20
D496V3, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             9             174
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC6 MUTATED        9      4     10
  ERCC6 WILD-TYPE     78     76     90
D496V4, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             4              76
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC6 MUTATED        3     13     11
  ERCC6 WILD-TYPE     86    147    127
D496V5, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            13             147
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC6 MUTATED       15     10      2
  ERCC6 WILD-TYPE    167    123     70
D496V6, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1            15             167
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6 MUTATED        6     11      6     10
  ERCC6 WILD-TYPE    106     85     86    176
D496V7, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             6             106
  CLUS_2            11              85
  CLUS_3             6              86
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERCC6 MUTATED        5      4      9      3      2      1      9
  ERCC6 WILD-TYPE     55     46     40     37     61    124     90
D496V8, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             9              40
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6 MUTATED       12      6      3     11
  ERCC6 WILD-TYPE    118     72     65    185
D496V9, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             6              72
  CLUS_3             3              65
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERCC6 MUTATED        4      4      1      4     11      1      5      0
  ERCC6 WILD-TYPE     36     58     27     76     58     47     38     28
                 vv
clus              CLUS_9
  ERCC6 MUTATED        2
  ERCC6 WILD-TYPE     72
D496V10, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5            11              58
  CLUS_6             1              47
  CLUS_7             5              38
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6 MUTATED        2      1      2      1
  ERCC6 WILD-TYPE     31     30     25     18
D496V11, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6 MUTATED        2      1      3      0
  ERCC6 WILD-TYPE     52      9     21     22
D496V12, multiclass
        clus
vv       ERCC6 MUTATED ERCC6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(497) Variable = ALG2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG2 MUTATED        0      0      0      3
  ALG2 WILD-TYPE     46     58     64     40
D497V1, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG2 MUTATED        2      1      0
  ALG2 WILD-TYPE     49     82     77
D497V2, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG2 MUTATED        5      0      3      0
  ALG2 WILD-TYPE    173    183     98     20
D497V3, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG2 MUTATED        2      1      2
  ALG2 WILD-TYPE     85     79     98
D497V4, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG2 MUTATED        0      3      3
  ALG2 WILD-TYPE     89    157    135
D497V5, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG2 MUTATED        3      2      1
  ALG2 WILD-TYPE    179    131     71
D497V6, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG2 MUTATED        2      2      1      3
  ALG2 WILD-TYPE    110     94     91    183
D497V7, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALG2 MUTATED        1      1      1      1      1      0      3
  ALG2 WILD-TYPE     59     49     48     39     62    125     96
D497V8, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG2 MUTATED        3      1      0      3
  ALG2 WILD-TYPE    127     77     68    193
D497V9, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ALG2 MUTATED        2      1      3      0      1      0      0      0      0
  ALG2 WILD-TYPE     38     61     25     80     68     48     43     28     74
D497V10, multiclass
        clus
vv       ALG2 MUTATED ALG2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG2 MUTATED        0      1      0      0
  ALG2 WILD-TYPE     33     30     27     19
D497V11, multiclass
[1] "Remove cluster labels:" "ALG2 MUTATED"          
clus
  ALG2 MUTATED ALG2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-G5-6641 
"ALG2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG2 MUTATED        1      0      0      0
  ALG2 WILD-TYPE     53     10     24     22
D497V12, multiclass
[1] "Remove cluster labels:" "ALG2 MUTATED"          
clus
  ALG2 MUTATED ALG2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" "ALG2 WILD-TYPE" 
    TCGA-G5-6641 
"ALG2 WILD-TYPE" 

Clustering(498) Variable = C9ORF131 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        1      0      0      3
  C9ORF131 WILD-TYPE     45     58     64     40
D498V1, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED        2      2      0
  C9ORF131 WILD-TYPE     49     81     77
D498V2, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED       13      0      0      0
  C9ORF131 WILD-TYPE    165    183    101     20
D498V3, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1               13                165
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED        2      0      7
  C9ORF131 WILD-TYPE     85     80     93
D498V4, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED        0      5      5
  C9ORF131 WILD-TYPE     89    155    133
D498V5, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                5                155
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED        6      4      0
  C9ORF131 WILD-TYPE    176    129     72
D498V6, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                4                129
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        0      3      6      4
  C9ORF131 WILD-TYPE    112     93     86    182
D498V7, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                6                 86
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C9ORF131 MUTATED        0      0      8      0      1      1      3
  C9ORF131 WILD-TYPE     60     50     41     40     62    124     96
D498V8, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                8                 41
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        6      2      0      4
  C9ORF131 WILD-TYPE    124     76     68    192
D498V9, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C9ORF131 MUTATED        1      3      1      1      5      0      1      0
  C9ORF131 WILD-TYPE     39     59     27     79     64     48     42     28
                    vv
clus                 CLUS_9
  C9ORF131 MUTATED        0
  C9ORF131 WILD-TYPE     74
D498V10, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        0      0      0      2
  C9ORF131 WILD-TYPE     33     31     27     17
D498V11, multiclass
[1] "Remove cluster labels:" "C9ORF131 MUTATED"      
clus
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G5-6235         TCGA-G5-6641 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        1      0      1      0
  C9ORF131 WILD-TYPE     53     10     23     22
D498V12, multiclass
[1] "Remove cluster labels:" "C9ORF131 MUTATED"      
clus
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G5-6235         TCGA-G5-6641 
"C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" "C9ORF131 WILD-TYPE" 

Clustering(499) Variable = EXT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXT1 MUTATED        3      2      1      3
  EXT1 WILD-TYPE     43     56     63     40
D499V1, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            2             56
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXT1 MUTATED        5      3      1
  EXT1 WILD-TYPE     46     80     76
D499V2, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXT1 MUTATED       13      5      2      0
  EXT1 WILD-TYPE    165    178     99     20
D499V3, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            5            178
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXT1 MUTATED        3      3      4
  EXT1 WILD-TYPE     84     77     96
D499V4, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXT1 MUTATED        5      5      6
  EXT1 WILD-TYPE     84    155    132
D499V5, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXT1 MUTATED        8      6      2
  EXT1 WILD-TYPE    174    127     70
D499V6, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXT1 MUTATED        5      4      2      9
  EXT1 WILD-TYPE    107     92     90    177
D499V7, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXT1 MUTATED        3      3      2      1      1      2      8
  EXT1 WILD-TYPE     57     47     47     39     62    123     91
D499V8, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXT1 MUTATED        8      1      1      8
  EXT1 WILD-TYPE    122     77     67    188
D499V9, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EXT1 MUTATED        4      3      2      1      5      0      2      0      1
  EXT1 WILD-TYPE     36     59     26     79     64     48     41     28     73
D499V10, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXT1 MUTATED        2      0      0      2
  EXT1 WILD-TYPE     31     31     27     17
D499V11, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXT1 MUTATED        3      0      0      1
  EXT1 WILD-TYPE     51     10     24     21
D499V12, multiclass
        clus
vv       EXT1 MUTATED EXT1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(500) Variable = IGFBP7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        1      0      0      0
  IGFBP7 WILD-TYPE     45     58     64     43
D500V1, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        1      0      0
  IGFBP7 WILD-TYPE     50     83     77
D500V2, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        0      3      1      0
  IGFBP7 WILD-TYPE    178    180    100     20
D500V3, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0              178
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        1      2      1
  IGFBP7 WILD-TYPE     86     78     99
D500V4, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        0      2      3
  IGFBP7 WILD-TYPE     89    158    135
D500V5, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        3      2      0
  IGFBP7 WILD-TYPE    179    131     72
D500V6, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        3      0      1      1
  IGFBP7 WILD-TYPE    109     96     91    185
D500V7, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGFBP7 MUTATED        2      0      0      0      2      0      1
  IGFBP7 WILD-TYPE     58     50     49     40     61    125     98
D500V8, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        3      1      0      1
  IGFBP7 WILD-TYPE    127     77     68    195
D500V9, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IGFBP7 MUTATED        0      1      1      1      1      1      0      0
  IGFBP7 WILD-TYPE     40     61     27     79     68     47     43     28
                  vv
clus               CLUS_9
  IGFBP7 MUTATED        0
  IGFBP7 WILD-TYPE     74
D500V10, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        1      1      0      0
  IGFBP7 WILD-TYPE     32     30     27     19
D500V11, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               2              108 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        1      0      1      0
  IGFBP7 WILD-TYPE     53     10     23     22
D500V12, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               2              108 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 

Clustering(501) Variable = C6ORF89 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        3      0      0      1
  C6ORF89 WILD-TYPE     43     58     64     42
D501V1, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        2      1      1
  C6ORF89 WILD-TYPE     49     82     76
D501V2, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        4      1      0      2
  C6ORF89 WILD-TYPE    174    182    101     18
D501V3, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        3      0      0
  C6ORF89 WILD-TYPE     84     80    100
D501V4, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        2      2      1
  C6ORF89 WILD-TYPE     87    158    137
D501V5, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        3      1      1
  C6ORF89 WILD-TYPE    179    132     71
D501V6, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        1      0      2      4
  C6ORF89 WILD-TYPE    111     96     90    182
D501V7, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               0                96
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF89 MUTATED        2      0      1      0      1      1      2
  C6ORF89 WILD-TYPE     58     50     48     40     62    124     97
D501V8, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        1      1      1      4
  C6ORF89 WILD-TYPE    129     77     67    192
D501V9, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF89 MUTATED        1      1      0      1      3      0      1      0
  C6ORF89 WILD-TYPE     39     61     28     79     66     48     42     28
                   vv
clus                CLUS_9
  C6ORF89 MUTATED        0
  C6ORF89 WILD-TYPE     74
D501V10, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        2      1      0      0
  C6ORF89 WILD-TYPE     31     30     27     19
D501V11, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        3      0      0      0
  C6ORF89 WILD-TYPE     51     10     24     22
D501V12, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(502) Variable = ART5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        0      1      0      1
  ART5 WILD-TYPE     46     57     64     42
D502V1, multiclass
[1] "Remove cluster labels:" "ART5 MUTATED"          
clus
  ART5 MUTATED ART5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3878 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AY-4071 
"ART5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART5 MUTATED        1      0      1
  ART5 WILD-TYPE     50     83     76
D502V2, multiclass
[1] "Remove cluster labels:" "ART5 MUTATED"          
clus
  ART5 MUTATED ART5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3878 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" "ART5 WILD-TYPE" 
    TCGA-AY-4071 
"ART5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        8      1      1      0
  ART5 WILD-TYPE    170    182    100     20
D502V3, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART5 MUTATED        4      0      4
  ART5 WILD-TYPE     83     80     96
D502V4, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART5 MUTATED        1      3      4
  ART5 WILD-TYPE     88    157    134
D502V5, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART5 MUTATED        3      4      1
  ART5 WILD-TYPE    179    129     71
D502V6, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        0      5      2      3
  ART5 WILD-TYPE    112     91     90    183
D502V7, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ART5 MUTATED        0      2      5      0      0      2      1
  ART5 WILD-TYPE     60     48     44     40     63    123     98
D502V8, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        3      2      0      5
  ART5 WILD-TYPE    127     76     68    191
D502V9, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ART5 MUTATED        1      1      1      3      3      0      0      0      1
  ART5 WILD-TYPE     39     61     27     77     66     48     43     28     73
D502V10, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        1      0      0      2
  ART5 WILD-TYPE     32     31     27     17
D502V11, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        1      0      2      0
  ART5 WILD-TYPE     53     10     22     22
D502V12, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(503) Variable = CUL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        1      0      0      4
  CUL2 WILD-TYPE     45     58     64     39
D503V1, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL2 MUTATED        3      1      1
  CUL2 WILD-TYPE     48     82     76
D503V2, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED       12      2      1      0
  CUL2 WILD-TYPE    166    181    100     20
D503V3, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL2 MUTATED        4      1      5
  CUL2 WILD-TYPE     83     79     95
D503V4, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL2 MUTATED        0      8      6
  CUL2 WILD-TYPE     89    152    132
D503V5, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            8            152
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL2 MUTATED        6      8      0
  CUL2 WILD-TYPE    176    125     72
D503V6, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            8            125
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        2      4      4      5
  CUL2 WILD-TYPE    110     92     88    181
D503V7, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            4             88
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUL2 MUTATED        3      1      6      0      1      0      4
  CUL2 WILD-TYPE     57     49     43     40     62    125     95
D503V8, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        6      2      0      6
  CUL2 WILD-TYPE    124     76     68    190
D503V9, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CUL2 MUTATED        1      2      1      0      7      1      1      0      1
  CUL2 WILD-TYPE     39     60     27     80     62     47     42     28     73
D503V10, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            7             62
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        0      0      0      3
  CUL2 WILD-TYPE     33     31     27     16
D503V11, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        1      0      2      0
  CUL2 WILD-TYPE     53     10     22     22
D503V12, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(504) Variable = CDC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        0      0      0      1
  CDC6 WILD-TYPE     46     58     64     42
D504V1, multiclass
[1] "Remove cluster labels:" "CDC6 MUTATED"          
clus
  CDC6 MUTATED CDC6 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        0      0      1
  CDC6 WILD-TYPE     51     83     76
D504V2, multiclass
[1] "Remove cluster labels:" "CDC6 MUTATED"          
clus
  CDC6 MUTATED CDC6 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CDC6 WILD-TYPE" "CDC6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        6      3      1      0
  CDC6 WILD-TYPE    172    180    100     20
D504V3, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        5      2      2
  CDC6 WILD-TYPE     82     78     98
D504V4, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        3      3      2
  CDC6 WILD-TYPE     86    157    136
D504V5, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            3            157
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        4      4      0
  CDC6 WILD-TYPE    178    129     72
D504V6, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        1      4      3      2
  CDC6 WILD-TYPE    111     92     89    184
D504V7, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC6 MUTATED        3      1      1      3      1      0      1
  CDC6 WILD-TYPE     57     49     48     37     62    125     98
D504V8, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        5      2      1      2
  CDC6 WILD-TYPE    125     76     67    194
D504V9, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CDC6 MUTATED        4      2      0      1      1      0      1      0      1
  CDC6 WILD-TYPE     36     60     28     79     68     48     42     28     73
D504V10, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        0      1      1      2
  CDC6 WILD-TYPE     33     30     26     17
D504V11, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        3      0      1      0
  CDC6 WILD-TYPE     51     10     23     22
D504V12, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(505) Variable = SOX7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        3      0      0      1
  SOX7 WILD-TYPE     43     58     64     42
D505V1, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED        3      1      0
  SOX7 WILD-TYPE     48     82     77
D505V2, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        9      2      0      0
  SOX7 WILD-TYPE    169    181    101     20
D505V3, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED        2      2      4
  SOX7 WILD-TYPE     85     78     96
D505V4, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED        0      5      7
  SOX7 WILD-TYPE     89    155    131
D505V5, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED        3      8      1
  SOX7 WILD-TYPE    179    125     71
D505V6, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            8            125
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        2      5      1      4
  SOX7 WILD-TYPE    110     91     91    182
D505V7, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SOX7 MUTATED        1      3      3      0      1      0      4
  SOX7 WILD-TYPE     59     47     46     40     62    125     95
D505V8, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        3      1      2      6
  SOX7 WILD-TYPE    127     77     66    190
D505V9, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SOX7 MUTATED        1      1      1      1      4      0      2      1      1
  SOX7 WILD-TYPE     39     61     27     79     65     48     41     27     73
D505V10, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        1      0      1      1
  SOX7 WILD-TYPE     32     31     26     18
D505V11, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        0      0      2      1
  SOX7 WILD-TYPE     54     10     22     21
D505V12, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(506) Variable = ZNF644 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        3      0      0      2
  ZNF644 WILD-TYPE     43     58     64     41
D506V1, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF644 MUTATED        4      0      1
  ZNF644 WILD-TYPE     47     83     76
D506V2, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED       14      2      4      1
  ZNF644 WILD-TYPE    164    181     97     19
D506V3, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              2              181
  CLUS_3              4               97
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF644 MUTATED        7      0      9
  ZNF644 WILD-TYPE     80     80     91
D506V4, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              0               80
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF644 MUTATED        1      6      9
  ZNF644 WILD-TYPE     88    154    129
D506V5, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF644 MUTATED        8      4      4
  ZNF644 WILD-TYPE    174    129     68
D506V6, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        2      8      5      6
  ZNF644 WILD-TYPE    110     88     87    180
D506V7, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF644 MUTATED        3      2      5      2      4      0      5
  ZNF644 WILD-TYPE     57     48     44     38     59    125     94
D506V8, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              4               59
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        5      5      2      9
  ZNF644 WILD-TYPE    125     73     66    187
D506V9, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF644 MUTATED        0      5      0      2      9      0      2      1
  ZNF644 WILD-TYPE     40     57     28     78     60     48     41     27
                  vv
clus               CLUS_9
  ZNF644 MUTATED        2
  ZNF644 WILD-TYPE     72
D506V10, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              5               57
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        0      2      1      2
  ZNF644 WILD-TYPE     33     29     26     17
D506V11, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF644 MUTATED        3      1      1      0
  ZNF644 WILD-TYPE     51      9     23     22
D506V12, multiclass
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(507) Variable = XPOT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPOT MUTATED        2      0      0      1
  XPOT WILD-TYPE     44     58     64     42
D507V1, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPOT MUTATED        2      1      0
  XPOT WILD-TYPE     49     82     77
D507V2, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPOT MUTATED       10      0      1      0
  XPOT WILD-TYPE    168    183    100     20
D507V3, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1           10            168
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPOT MUTATED        3      0      5
  XPOT WILD-TYPE     84     80     95
D507V4, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPOT MUTATED        1      2      5
  XPOT WILD-TYPE     88    158    133
D507V5, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPOT MUTATED        6      1      1
  XPOT WILD-TYPE    176    132     71
D507V6, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPOT MUTATED        0      7      1      3
  XPOT WILD-TYPE    112     89     91    183
D507V7, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            0            112
  CLUS_2            7             89
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XPOT MUTATED        0      1      3      3      1      1      2
  XPOT WILD-TYPE     60     49     46     37     62    124     97
D507V8, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPOT MUTATED        4      1      2      2
  XPOT WILD-TYPE    126     77     66    194
D507V9, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  XPOT MUTATED        1      1      0      2      2      0      3      0      0
  XPOT WILD-TYPE     39     61     28     78     67     48     40     28     74
D507V10, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPOT MUTATED        0      0      2      1
  XPOT WILD-TYPE     33     31     25     18
D507V11, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPOT MUTATED        0      0      3      0
  XPOT WILD-TYPE     54     10     21     22
D507V12, multiclass
        clus
vv       XPOT MUTATED XPOT WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(508) Variable = TIFA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIFA MUTATED        1      0      0      0
  TIFA WILD-TYPE     45     58     64     43
D508V1, multiclass
[1] "Remove cluster labels:" "TIFA MUTATED"          
clus
  TIFA MUTATED TIFA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TIFA MUTATED        0      1      0
  TIFA WILD-TYPE     51     82     77
D508V2, multiclass
[1] "Remove cluster labels:" "TIFA MUTATED"          
clus
  TIFA MUTATED TIFA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" "TIFA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TIFA WILD-TYPE" "TIFA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIFA MUTATED        2      2      2      0
  TIFA WILD-TYPE    176    181     99     20
D508V3, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            2            176
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TIFA MUTATED        1      3      1
  TIFA WILD-TYPE     86     77     99
D508V4, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TIFA MUTATED        1      2      1
  TIFA WILD-TYPE     88    158    137
D508V5, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TIFA MUTATED        1      2      1
  TIFA WILD-TYPE    181    131     71
D508V6, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIFA MUTATED        3      1      1      1
  TIFA WILD-TYPE    109     95     91    185
D508V7, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TIFA MUTATED        2      0      1      0      2      1      0
  TIFA WILD-TYPE     58     50     48     40     61    124     99
D508V8, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIFA MUTATED        4      0      1      1
  TIFA WILD-TYPE    126     78     67    195
D508V9, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TIFA MUTATED        0      0      0      3      1      1      1      0      0
  TIFA WILD-TYPE     40     62     28     77     68     47     42     28     74
D508V10, multiclass
        clus
vv       TIFA MUTATED TIFA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIFA MUTATED        0      0      0      0
  TIFA WILD-TYPE     33     31     27     19
D508V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIFA MUTATED        0      0      0      0
  TIFA WILD-TYPE     54     10     24     22
D508V12, multiclass

Clustering(509) Variable = STK38L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38L MUTATED        0      0      0      3
  STK38L WILD-TYPE     46     58     64     40
D509V1, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STK38L MUTATED        1      1      1
  STK38L WILD-TYPE     50     82     76
D509V2, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38L MUTATED        5      2      1      1
  STK38L WILD-TYPE    173    181    100     19
D509V3, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STK38L MUTATED        3      1      3
  STK38L WILD-TYPE     84     79     97
D509V4, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STK38L MUTATED        4      2      3
  STK38L WILD-TYPE     85    158    135
D509V5, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              4               85
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STK38L MUTATED        5      3      1
  STK38L WILD-TYPE    177    130     71
D509V6, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38L MUTATED        2      3      2      3
  STK38L WILD-TYPE    110     93     90    183
D509V7, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK38L MUTATED        2      3      0      1      2      0      2
  STK38L WILD-TYPE     58     47     49     39     61    125     97
D509V8, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38L MUTATED        7      0      0      2
  STK38L WILD-TYPE    123     78     68    194
D509V9, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              7              123
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STK38L MUTATED        2      1      1      3      1      0      1      0
  STK38L WILD-TYPE     38     61     27     77     68     48     42     28
                  vv
clus               CLUS_9
  STK38L MUTATED        0
  STK38L WILD-TYPE     74
D509V10, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38L MUTATED        1      1      1      0
  STK38L WILD-TYPE     32     30     26     19
D509V11, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38L MUTATED        2      0      0      1
  STK38L WILD-TYPE     52     10     24     21
D509V12, multiclass
        clus
vv       STK38L MUTATED STK38L WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(510) Variable = SMARCA4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        2      1      2      3
  SMARCA4 WILD-TYPE     44     57     62     40
D510V1, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               2                62
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        3      2      3
  SMARCA4 WILD-TYPE     48     81     74
D510V2, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                81
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED       23      6      3      0
  SMARCA4 WILD-TYPE    155    177     98     20
D510V3, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              23               155
  CLUS_2               6               177
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       11      4     10
  SMARCA4 WILD-TYPE     76     76     90
D510V4, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              11                76
  CLUS_2               4                76
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED        5     10     11
  SMARCA4 WILD-TYPE     84    150    127
D510V5, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               5                84
  CLUS_2              10               150
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA4 MUTATED       14      7      5
  SMARCA4 WILD-TYPE    168    126     67
D510V6, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              14               168
  CLUS_2               7               126
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        5     10      9      8
  SMARCA4 WILD-TYPE    107     86     83    178
D510V7, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               5               107
  CLUS_2              10                86
  CLUS_3               9                83
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA4 MUTATED        3      2     12      1      5      4      5
  SMARCA4 WILD-TYPE     57     48     37     39     58    121     94
D510V8, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               2                48
  CLUS_3              12                37
  CLUS_4               1                39
  CLUS_5               5                58
  CLUS_6               4               121
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED       11      8      1     13
  SMARCA4 WILD-TYPE    119     70     67    183
D510V9, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1              11               119
  CLUS_2               8                70
  CLUS_3               1                67
  CLUS_4              13               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMARCA4 MUTATED        3      8      3      5     10      1      1      0
  SMARCA4 WILD-TYPE     37     54     25     75     59     47     42     28
                   vv
clus                CLUS_9
  SMARCA4 MUTATED        2
  SMARCA4 WILD-TYPE     72
D510V10, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               8                54
  CLUS_3               3                25
  CLUS_4               5                75
  CLUS_5              10                59
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        3      1      2      5
  SMARCA4 WILD-TYPE     30     30     25     14
D510V11, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                30
  CLUS_3               2                25
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA4 MUTATED        6      0      4      1
  SMARCA4 WILD-TYPE     48     10     20     21
D510V12, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               6                48
  CLUS_2               0                10
  CLUS_3               4                20
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(511) Variable = ZNF691 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF691 MUTATED        1      0      1      0
  ZNF691 WILD-TYPE     45     58     63     43
D511V1, multiclass
[1] "Remove cluster labels:" "ZNF691 MUTATED"        
clus
  ZNF691 MUTATED ZNF691 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3517 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609       TCGA-AG-3611 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF691 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF691 MUTATED        1      1      0
  ZNF691 WILD-TYPE     50     82     77
D511V2, multiclass
[1] "Remove cluster labels:" "ZNF691 MUTATED"        
clus
  ZNF691 MUTATED ZNF691 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3517 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609       TCGA-AG-3611 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" "ZNF691 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF691 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF691 MUTATED        5      2      1      0
  ZNF691 WILD-TYPE    173    181    100     20
D511V3, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF691 MUTATED        2      2      2
  ZNF691 WILD-TYPE     85     78     98
D511V4, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF691 MUTATED        0      3      2
  ZNF691 WILD-TYPE     89    157    136
D511V5, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF691 MUTATED        2      3      0
  ZNF691 WILD-TYPE    180    130     72
D511V6, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF691 MUTATED        2      3      1      2
  ZNF691 WILD-TYPE    110     93     91    184
D511V7, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF691 MUTATED        2      0      3      1      0      1      1
  ZNF691 WILD-TYPE     58     50     46     39     63    124     98
D511V8, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF691 MUTATED        5      0      1      2
  ZNF691 WILD-TYPE    125     78     67    194
D511V9, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF691 MUTATED        0      1      0      0      4      2      0      0
  ZNF691 WILD-TYPE     40     61     28     80     65     46     43     28
                  vv
clus               CLUS_9
  ZNF691 MUTATED        1
  ZNF691 WILD-TYPE     73
D511V10, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF691 MUTATED        1      0      0      2
  ZNF691 WILD-TYPE     32     31     27     17
D511V11, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF691 MUTATED        1      0      1      1
  ZNF691 WILD-TYPE     53     10     23     21
D511V12, multiclass
        clus
vv       ZNF691 MUTATED ZNF691 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(512) Variable = UBR4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR4 MUTATED        6      1      1      3
  UBR4 WILD-TYPE     40     57     63     40
D512V1, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR4 MUTATED        6      3      2
  UBR4 WILD-TYPE     45     80     75
D512V2, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR4 MUTATED       33      9      3      1
  UBR4 WILD-TYPE    145    174     98     19
D512V3, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1           33            145
  CLUS_2            9            174
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR4 MUTATED       14      6     15
  UBR4 WILD-TYPE     73     74     85
D512V4, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1           14             73
  CLUS_2            6             74
  CLUS_3           15             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR4 MUTATED        6     11     22
  UBR4 WILD-TYPE     83    149    116
D512V5, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            6             83
  CLUS_2           11            149
  CLUS_3           22            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR4 MUTATED       20     13      6
  UBR4 WILD-TYPE    162    120     66
D512V6, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1           20            162
  CLUS_2           13            120
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR4 MUTATED        8     14     13     12
  UBR4 WILD-TYPE    104     82     79    174
D512V7, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            8            104
  CLUS_2           14             82
  CLUS_3           13             79
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBR4 MUTATED        6      8     16      2      3      3      9
  UBR4 WILD-TYPE     54     42     33     38     60    122     90
D512V8, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            8             42
  CLUS_3           16             33
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            3            122
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR4 MUTATED       19      7      1     20
  UBR4 WILD-TYPE    111     71     67    176
D512V9, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1           19            111
  CLUS_2            7             71
  CLUS_3            1             67
  CLUS_4           20            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UBR4 MUTATED        6      8      2      7     17      2      3      0      2
  UBR4 WILD-TYPE     34     54     26     73     52     46     40     28     72
D512V10, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            8             54
  CLUS_3            2             26
  CLUS_4            7             73
  CLUS_5           17             52
  CLUS_6            2             46
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR4 MUTATED        5      1      0      4
  UBR4 WILD-TYPE     28     30     27     15
D512V11, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR4 MUTATED        6      0      1      3
  UBR4 WILD-TYPE     48     10     23     19
D512V12, multiclass
        clus
vv       UBR4 MUTATED UBR4 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(513) Variable = LPCAT3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPCAT3 MUTATED        0      1      0      1
  LPCAT3 WILD-TYPE     46     57     64     42
D513V1, multiclass
[1] "Remove cluster labels:" "LPCAT3 MUTATED"        
clus
  LPCAT3 MUTATED LPCAT3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AY-4071 
"LPCAT3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPCAT3 MUTATED        1      1      0
  LPCAT3 WILD-TYPE     50     82     77
D513V2, multiclass
[1] "Remove cluster labels:" "LPCAT3 MUTATED"        
clus
  LPCAT3 MUTATED LPCAT3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" "LPCAT3 WILD-TYPE" 
      TCGA-AY-4071 
"LPCAT3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPCAT3 MUTATED        4      1      0      0
  LPCAT3 WILD-TYPE    174    182    101     20
D513V3, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPCAT3 MUTATED        1      0      2
  LPCAT3 WILD-TYPE     86     80     98
D513V4, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPCAT3 MUTATED        0      1      3
  LPCAT3 WILD-TYPE     89    159    135
D513V5, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPCAT3 MUTATED        3      1      0
  LPCAT3 WILD-TYPE    179    132     72
D513V6, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPCAT3 MUTATED        0      1      2      2
  LPCAT3 WILD-TYPE    112     95     90    184
D513V7, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LPCAT3 MUTATED        1      0      2      0      0      1      1
  LPCAT3 WILD-TYPE     59     50     47     40     63    124     98
D513V8, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPCAT3 MUTATED        3      0      0      1
  LPCAT3 WILD-TYPE    127     78     68    195
D513V9, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LPCAT3 MUTATED        0      1      0      1      1      0      1      0
  LPCAT3 WILD-TYPE     40     61     28     79     68     48     42     28
                  vv
clus               CLUS_9
  LPCAT3 MUTATED        0
  LPCAT3 WILD-TYPE     74
D513V10, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPCAT3 MUTATED        0      0      0      3
  LPCAT3 WILD-TYPE     33     31     27     16
D513V11, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPCAT3 MUTATED        2      0      1      0
  LPCAT3 WILD-TYPE     52     10     23     22
D513V12, multiclass
        clus
vv       LPCAT3 MUTATED LPCAT3 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(514) Variable = STX7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX7 MUTATED        2      0      0      2
  STX7 WILD-TYPE     44     58     64     41
D514V1, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX7 MUTATED        2      1      1
  STX7 WILD-TYPE     49     82     76
D514V2, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX7 MUTATED        4      0      0      0
  STX7 WILD-TYPE    174    183    101     20
D514V3, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX7 MUTATED        1      0      0
  STX7 WILD-TYPE     86     80    100
D514V4, multiclass
[1] "Remove cluster labels:" "STX7 MUTATED"          
clus
  STX7 MUTATED STX7 WILD-TYPE 
             1            266 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AD-6890     TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AF-2693     TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AZ-4681     TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6718 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DM-A28H     TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-G4-6588     TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" "STX7 WILD-TYPE" 
    TCGA-G5-6235     TCGA-G5-6641 
"STX7 WILD-TYPE" "STX7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX7 MUTATED        0      0      3
  STX7 WILD-TYPE     89    160    135
D514V5, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            0            160
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX7 MUTATED        3      0      0
  STX7 WILD-TYPE    179    133     72
D514V6, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX7 MUTATED        0      0      1      4
  STX7 WILD-TYPE    112     96     91    182
D514V7, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STX7 MUTATED        0      0      0      0      1      1      3
  STX7 WILD-TYPE     60     50     49     40     62    124     96
D514V8, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX7 MUTATED        0      1      0      3
  STX7 WILD-TYPE    130     77     68    193
D514V9, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  STX7 MUTATED        0      1      1      1      1      0      0      0      0
  STX7 WILD-TYPE     40     61     27     79     68     48     43     28     74
D514V10, multiclass
        clus
vv       STX7 MUTATED STX7 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX7 MUTATED        0      0      0      0
  STX7 WILD-TYPE     33     31     27     19
D514V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX7 MUTATED        0      0      0      0
  STX7 WILD-TYPE     54     10     24     22
D514V12, multiclass

Clustering(515) Variable = SLC2A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A3 MUTATED        1      0      0      0
  SLC2A3 WILD-TYPE     45     58     64     43
D515V1, multiclass
[1] "Remove cluster labels:" "SLC2A3 MUTATED"        
clus
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC2A3 MUTATED        1      0      0
  SLC2A3 WILD-TYPE     50     83     77
D515V2, multiclass
[1] "Remove cluster labels:" "SLC2A3 MUTATED"        
clus
  SLC2A3 MUTATED SLC2A3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"SLC2A3 WILD-TYPE" "SLC2A3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A3 MUTATED        8      3      1      0
  SLC2A3 WILD-TYPE    170    180    100     20
D515V3, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC2A3 MUTATED        5      1      5
  SLC2A3 WILD-TYPE     82     79     95
D515V4, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC2A3 MUTATED        3      3      5
  SLC2A3 WILD-TYPE     86    157    133
D515V5, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC2A3 MUTATED        5      4      2
  SLC2A3 WILD-TYPE    177    129     70
D515V6, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A3 MUTATED        2      6      3      1
  SLC2A3 WILD-TYPE    110     90     89    185
D515V7, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC2A3 MUTATED        1      3      4      2      1      0      1
  SLC2A3 WILD-TYPE     59     47     45     38     62    125     98
D515V8, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A3 MUTATED        5      2      2      3
  SLC2A3 WILD-TYPE    125     76     66    193
D515V9, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC2A3 MUTATED        3      1      0      1      2      1      3      0
  SLC2A3 WILD-TYPE     37     61     28     79     67     47     40     28
                  vv
clus               CLUS_9
  SLC2A3 MUTATED        1
  SLC2A3 WILD-TYPE     73
D515V10, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A3 MUTATED        3      0      1      2
  SLC2A3 WILD-TYPE     30     31     26     17
D515V11, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A3 MUTATED        3      0      1      2
  SLC2A3 WILD-TYPE     51     10     23     20
D515V12, multiclass
        clus
vv       SLC2A3 MUTATED SLC2A3 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(516) Variable = HDAC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC1 MUTATED        0      0      0      1
  HDAC1 WILD-TYPE     46     58     64     42
D516V1, multiclass
[1] "Remove cluster labels:" "HDAC1 MUTATED"         
clus
  HDAC1 MUTATED HDAC1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC1 MUTATED        1      0      0
  HDAC1 WILD-TYPE     50     83     77
D516V2, multiclass
[1] "Remove cluster labels:" "HDAC1 MUTATED"         
clus
  HDAC1 MUTATED HDAC1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"HDAC1 WILD-TYPE" "HDAC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC1 MUTATED        3      1      0      0
  HDAC1 WILD-TYPE    175    182    101     20
D516V3, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC1 MUTATED        0      0      3
  HDAC1 WILD-TYPE     87     80     97
D516V4, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC1 MUTATED        1      1      3
  HDAC1 WILD-TYPE     88    159    135
D516V5, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC1 MUTATED        3      2      0
  HDAC1 WILD-TYPE    179    131     72
D516V6, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC1 MUTATED        1      3      0      1
  HDAC1 WILD-TYPE    111     93     92    185
D516V7, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HDAC1 MUTATED        1      2      1      0      0      0      1
  HDAC1 WILD-TYPE     59     48     48     40     63    125     98
D516V8, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC1 MUTATED        2      0      0      2
  HDAC1 WILD-TYPE    128     78     68    194
D516V9, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HDAC1 MUTATED        1      0      0      2      1      0      0      0
  HDAC1 WILD-TYPE     39     62     28     78     68     48     43     28
                 vv
clus              CLUS_9
  HDAC1 MUTATED        0
  HDAC1 WILD-TYPE     74
D516V10, multiclass
        clus
vv       HDAC1 MUTATED HDAC1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC1 MUTATED        0      0      0      0
  HDAC1 WILD-TYPE     33     31     27     19
D516V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC1 MUTATED        0      0      0      0
  HDAC1 WILD-TYPE     54     10     24     22
D516V12, multiclass

Clustering(517) Variable = RUFY1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY1 MUTATED        0      1      0      0
  RUFY1 WILD-TYPE     46     57     64     43
D517V1, multiclass
[1] "Remove cluster labels:" "RUFY1 MUTATED"         
clus
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY1 MUTATED        0      1      0
  RUFY1 WILD-TYPE     51     82     77
D517V2, multiclass
[1] "Remove cluster labels:" "RUFY1 MUTATED"         
clus
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY1 MUTATED        8      2      3      1
  RUFY1 WILD-TYPE    170    181     98     19
D517V3, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY1 MUTATED        3      3      7
  RUFY1 WILD-TYPE     84     77     93
D517V4, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY1 MUTATED        2      6      4
  RUFY1 WILD-TYPE     87    154    134
D517V5, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUFY1 MUTATED        4      6      2
  RUFY1 WILD-TYPE    178    127     70
D517V6, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY1 MUTATED        3      9      1      1
  RUFY1 WILD-TYPE    109     87     91    185
D517V7, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             9              87
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUFY1 MUTATED        2      4      5      2      0      1      0
  RUFY1 WILD-TYPE     58     46     44     38     63    124     99
D517V8, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY1 MUTATED       10      0      2      2
  RUFY1 WILD-TYPE    120     78     66    194
D517V9, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RUFY1 MUTATED        4      1      2      1      4      0      0      0
  RUFY1 WILD-TYPE     36     61     26     79     65     48     43     28
                 vv
clus              CLUS_9
  RUFY1 MUTATED        2
  RUFY1 WILD-TYPE     72
D517V10, multiclass
        clus
vv       RUFY1 MUTATED RUFY1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY1 MUTATED        0      0      0      1
  RUFY1 WILD-TYPE     33     31     27     18
D517V11, multiclass
[1] "Remove cluster labels:" "RUFY1 MUTATED"         
clus
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-G5-6641 
"RUFY1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUFY1 MUTATED        0      0      1      0
  RUFY1 WILD-TYPE     54     10     23     22
D517V12, multiclass
[1] "Remove cluster labels:" "RUFY1 MUTATED"         
clus
  RUFY1 MUTATED RUFY1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" "RUFY1 WILD-TYPE" 
     TCGA-G5-6641 
"RUFY1 WILD-TYPE" 

Clustering(518) Variable = PSD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        3      1      0      0
  PSD WILD-TYPE     43     57     64     43
D518V1, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           3            43
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           0            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PSD MUTATED        3      1      0
  PSD WILD-TYPE     48     82     77
D518V2, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           3            48
  CLUS_2           1            82
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED       11      3      2      0
  PSD WILD-TYPE    167    180     99     20
D518V3, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1          11           167
  CLUS_2           3           180
  CLUS_3           2            99
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PSD MUTATED        3      2      7
  PSD WILD-TYPE     84     78     93
D518V4, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           3            84
  CLUS_2           2            78
  CLUS_3           7            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PSD MUTATED        1      5      7
  PSD WILD-TYPE     88    155    131
D518V5, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           1            88
  CLUS_2           5           155
  CLUS_3           7           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PSD MUTATED        7      4      2
  PSD WILD-TYPE    175    129     70
D518V6, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           7           175
  CLUS_2           4           129
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        2      5      4      6
  PSD WILD-TYPE    110     91     88    180
D518V7, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           2           110
  CLUS_2           5            91
  CLUS_3           4            88
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSD MUTATED        2      2      6      0      1      1      5
  PSD WILD-TYPE     58     48     43     40     62    124     94
D518V8, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           2            58
  CLUS_2           2            48
  CLUS_3           6            43
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        8      1      1      6
  PSD WILD-TYPE    122     77     67    190
D518V9, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           8           122
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PSD MUTATED        2      2      1      1      7      0      1      0      2
  PSD WILD-TYPE     38     60     27     79     62     48     42     28     72
D518V10, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           1            27
  CLUS_4           1            79
  CLUS_5           7            62
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        2      0      1      2
  PSD WILD-TYPE     31     31     26     17
D518V11, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            31
  CLUS_3           1            26
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        2      0      2      1
  PSD WILD-TYPE     52     10     22     21
D518V12, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(519) Variable = CDC5L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        1      0      0      1
  CDC5L WILD-TYPE     45     58     64     42
D519V1, multiclass
[1] "Remove cluster labels:" "CDC5L MUTATED"         
clus
  CDC5L MUTATED CDC5L WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AY-4071 
"CDC5L WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED        1      1      0
  CDC5L WILD-TYPE     50     82     77
D519V2, multiclass
[1] "Remove cluster labels:" "CDC5L MUTATED"         
clus
  CDC5L MUTATED CDC5L WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" "CDC5L WILD-TYPE" 
     TCGA-AY-4071 
"CDC5L WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED       11      1      1      0
  CDC5L WILD-TYPE    167    182    100     20
D519V3, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED        5      3      3
  CDC5L WILD-TYPE     82     77     97
D519V4, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED        2      4      5
  CDC5L WILD-TYPE     87    156    133
D519V5, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED        5      4      2
  CDC5L WILD-TYPE    177    129     70
D519V6, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        1      3      6      3
  CDC5L WILD-TYPE    111     93     86    183
D519V7, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC5L MUTATED        1      1      3      1      4      1      2
  CDC5L WILD-TYPE     59     49     46     39     59    124     97
D519V8, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        2      4      2      5
  CDC5L WILD-TYPE    128     74     66    191
D519V9, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2             128
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDC5L MUTATED        3      4      0      1      2      0      1      0
  CDC5L WILD-TYPE     37     58     28     79     67     48     42     28
                 vv
clus              CLUS_9
  CDC5L MUTATED        2
  CDC5L WILD-TYPE     72
D519V10, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        0      1      2      1
  CDC5L WILD-TYPE     33     30     25     18
D519V11, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        2      1      1      0
  CDC5L WILD-TYPE     52      9     23     22
D519V12, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(520) Variable = ARID2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        5      2      2      4
  ARID2 WILD-TYPE     41     56     62     39
D520V1, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             2              56
  CLUS_3             2              62
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        7      5      1
  ARID2 WILD-TYPE     44     78     76
D520V2, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             5              78
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED       22      6      6      3
  ARID2 WILD-TYPE    156    177     95     17
D520V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             6             177
  CLUS_3             6              95
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED       10      4      8
  ARID2 WILD-TYPE     77     76     92
D520V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             4              76
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED        8      7     15
  ARID2 WILD-TYPE     81    153    123
D520V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             8              81
  CLUS_2             7             153
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED       14      9      7
  ARID2 WILD-TYPE    168    124     65
D520V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             9             124
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        5      7     11     13
  ARID2 WILD-TYPE    107     89     81    173
D520V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             7              89
  CLUS_3            11              81
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID2 MUTATED        2      2      9      4      6      4      9
  ARID2 WILD-TYPE     58     48     40     36     57    121     90
D520V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             9              40
  CLUS_4             4              36
  CLUS_5             6              57
  CLUS_6             4             121
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED       11      8      3     12
  ARID2 WILD-TYPE    119     70     65    184
D520V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             8              70
  CLUS_3             3              65
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARID2 MUTATED        2      7      2      5      9      3      3      1
  ARID2 WILD-TYPE     38     55     26     75     60     45     40     27
                 vv
clus              CLUS_9
  ARID2 MUTATED        2
  ARID2 WILD-TYPE     72
D520V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5             9              60
  CLUS_6             3              45
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        1      2      3      4
  ARID2 WILD-TYPE     32     29     24     15
D520V11, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             3              24
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        7      0      1      2
  ARID2 WILD-TYPE     47     10     23     20
D520V12, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(521) Variable = SCLT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        2      0      0      4
  SCLT1 WILD-TYPE     44     58     64     39
D521V1, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        4      1      1
  SCLT1 WILD-TYPE     47     82     76
D521V2, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED       14      3      2      0
  SCLT1 WILD-TYPE    164    180     99     20
D521V3, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        3      2      8
  SCLT1 WILD-TYPE     84     78     92
D521V4, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        2      5      9
  SCLT1 WILD-TYPE     87    155    129
D521V5, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        9      6      1
  SCLT1 WILD-TYPE    173    127     71
D521V6, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        2      4      7      6
  SCLT1 WILD-TYPE    110     92     85    180
D521V7, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             7              85
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCLT1 MUTATED        1      3      7      0      2      0      6
  SCLT1 WILD-TYPE     59     47     42     40     61    125     93
D521V8, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        7      3      0      8
  SCLT1 WILD-TYPE    123     75     68    188
D521V9, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SCLT1 MUTATED        1      2      3      3      7      0      0      1
  SCLT1 WILD-TYPE     39     60     25     77     62     48     43     27
                 vv
clus              CLUS_9
  SCLT1 MUTATED        1
  SCLT1 WILD-TYPE     73
D521V10, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        3      0      1      2
  SCLT1 WILD-TYPE     30     31     26     17
D521V11, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        3      0      3      0
  SCLT1 WILD-TYPE     51     10     21     22
D521V12, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(522) Variable = ZFC3H1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        3      1      1      3
  ZFC3H1 WILD-TYPE     43     57     63     40
D522V1, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED        4      2      2
  ZFC3H1 WILD-TYPE     47     81     75
D522V2, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED       17      2      0      1
  ZFC3H1 WILD-TYPE    161    181    101     19
D522V3, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED        4      1      8
  ZFC3H1 WILD-TYPE     83     79     92
D522V4, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED        3      7      8
  ZFC3H1 WILD-TYPE     86    153    130
D522V5, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              7              153
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED        9      6      3
  ZFC3H1 WILD-TYPE    173    127     69
D522V6, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        1      7      5      8
  ZFC3H1 WILD-TYPE    111     89     87    178
D522V7, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              7               89
  CLUS_3              5               87
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFC3H1 MUTATED        2      1      8      1      1      2      6
  ZFC3H1 WILD-TYPE     58     49     41     39     62    123     93
D522V8, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              8               41
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        8      2      1     10
  ZFC3H1 WILD-TYPE    122     76     67    186
D522V9, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZFC3H1 MUTATED        2      4      2      0     10      1      1      0
  ZFC3H1 WILD-TYPE     38     58     26     80     59     47     42     28
                  vv
clus               CLUS_9
  ZFC3H1 MUTATED        1
  ZFC3H1 WILD-TYPE     73
D522V10, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5             10               59
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        0      1      0      3
  ZFC3H1 WILD-TYPE     33     30     27     16
D522V11, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        3      0      1      0
  ZFC3H1 WILD-TYPE     51     10     23     22
D522V12, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(523) Variable = OR2M3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M3 MUTATED        1      0      0      1
  OR2M3 WILD-TYPE     45     58     64     42
D523V1, multiclass
[1] "Remove cluster labels:" "OR2M3 MUTATED"         
clus
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AY-4071 
"OR2M3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M3 MUTATED        1      0      1
  OR2M3 WILD-TYPE     50     83     76
D523V2, multiclass
[1] "Remove cluster labels:" "OR2M3 MUTATED"         
clus
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-AY-4071 
"OR2M3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M3 MUTATED        9      4      2      2
  OR2M3 WILD-TYPE    169    179     99     18
D523V3, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M3 MUTATED        8      2      4
  OR2M3 WILD-TYPE     79     78     96
D523V4, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M3 MUTATED        1      2     11
  OR2M3 WILD-TYPE     88    158    127
D523V5, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M3 MUTATED        9      5      0
  OR2M3 WILD-TYPE    173    128     72
D523V6, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M3 MUTATED        3      3      8      3
  OR2M3 WILD-TYPE    109     93     84    183
D523V7, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             8              84
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2M3 MUTATED        3      2      4      2      4      0      2
  OR2M3 WILD-TYPE     57     48     45     38     59    125     97
D523V8, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M3 MUTATED        5      5      2      5
  OR2M3 WILD-TYPE    125     73     66    191
D523V9, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             5              73
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2M3 MUTATED        3      4      1      0      4      0      3      1
  OR2M3 WILD-TYPE     37     58     27     80     65     48     40     27
                 vv
clus              CLUS_9
  OR2M3 MUTATED        1
  OR2M3 WILD-TYPE     73
D523V10, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M3 MUTATED        1      1      0      2
  OR2M3 WILD-TYPE     32     30     27     17
D523V11, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M3 MUTATED        3      0      0      1
  OR2M3 WILD-TYPE     51     10     24     21
D523V12, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(524) Variable = RNF145 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF145 MUTATED        1      0      0      1
  RNF145 WILD-TYPE     45     58     64     42
D524V1, multiclass
[1] "Remove cluster labels:" "RNF145 MUTATED"        
clus
  RNF145 MUTATED RNF145 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AY-4071 
"RNF145 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF145 MUTATED        1      0      1
  RNF145 WILD-TYPE     50     83     76
D524V2, multiclass
[1] "Remove cluster labels:" "RNF145 MUTATED"        
clus
  RNF145 MUTATED RNF145 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" "RNF145 WILD-TYPE" 
      TCGA-AY-4071 
"RNF145 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF145 MUTATED       12      2      3      0
  RNF145 WILD-TYPE    166    181     98     20
D524V3, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF145 MUTATED        9      1      4
  RNF145 WILD-TYPE     78     79     96
D524V4, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF145 MUTATED        3      5      8
  RNF145 WILD-TYPE     86    155    130
D524V5, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF145 MUTATED        9      6      1
  RNF145 WILD-TYPE    173    127     71
D524V6, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF145 MUTATED        2      3      8      4
  RNF145 WILD-TYPE    110     93     84    182
D524V7, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              8               84
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF145 MUTATED        3      2      6      0      3      0      3
  RNF145 WILD-TYPE     57     48     43     40     60    125     96
D524V8, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF145 MUTATED        7      4      1      5
  RNF145 WILD-TYPE    123     74     67    191
D524V9, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF145 MUTATED        0      6      0      3      4      0      2      0
  RNF145 WILD-TYPE     40     56     28     77     65     48     41     28
                  vv
clus               CLUS_9
  RNF145 MUTATED        2
  RNF145 WILD-TYPE     72
D524V10, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              6               56
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF145 MUTATED        1      3      1      4
  RNF145 WILD-TYPE     32     28     26     15
D524V11, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               28
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF145 MUTATED        5      1      2      1
  RNF145 WILD-TYPE     49      9     22     21
D524V12, multiclass
        clus
vv       RNF145 MUTATED RNF145 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(525) Variable = TMEM169 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM169 MUTATED        0      1      0      0
  TMEM169 WILD-TYPE     46     57     64     43
D525V1, multiclass
[1] "Remove cluster labels:" "TMEM169 MUTATED"       
clus
  TMEM169 MUTATED TMEM169 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4008 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM169 MUTATED        0      1      0
  TMEM169 WILD-TYPE     51     82     77
D525V2, multiclass
[1] "Remove cluster labels:" "TMEM169 MUTATED"       
clus
  TMEM169 MUTATED TMEM169 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4008 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"TMEM169 WILD-TYPE" "TMEM169 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM169 MUTATED        8      5      0      1
  TMEM169 WILD-TYPE    170    178    101     19
D525V3, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               5               178
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM169 MUTATED        4      2      7
  TMEM169 WILD-TYPE     83     78     93
D525V4, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM169 MUTATED        4      4      5
  TMEM169 WILD-TYPE     85    156    133
D525V5, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               4               156
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM169 MUTATED        5      5      3
  TMEM169 WILD-TYPE    177    128     69
D525V6, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               5               128
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM169 MUTATED        3      5      4      2
  TMEM169 WILD-TYPE    109     91     88    184
D525V7, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM169 MUTATED        0      5      3      2      2      1      1
  TMEM169 WILD-TYPE     60     45     46     38     61    124     98
D525V8, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               5                45
  CLUS_3               3                46
  CLUS_4               2                38
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM169 MUTATED        9      2      1      2
  TMEM169 WILD-TYPE    121     76     67    194
D525V9, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM169 MUTATED        6      2      0      1      2      0      1      0
  TMEM169 WILD-TYPE     34     60     28     79     67     48     42     28
                   vv
clus                CLUS_9
  TMEM169 MUTATED        2
  TMEM169 WILD-TYPE     72
D525V10, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               6                34
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM169 MUTATED        1      2      1      3
  TMEM169 WILD-TYPE     32     29     26     16
D525V11, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM169 MUTATED        3      1      2      1
  TMEM169 WILD-TYPE     51      9     22     21
D525V12, multiclass
        clus
vv       TMEM169 MUTATED TMEM169 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(526) Variable = NOX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        1      0      0      0
  NOX5 WILD-TYPE     45     58     64     43
D526V1, multiclass
[1] "Remove cluster labels:" "NOX5 MUTATED"          
clus
  NOX5 MUTATED NOX5 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        1      0      0
  NOX5 WILD-TYPE     50     83     77
D526V2, multiclass
[1] "Remove cluster labels:" "NOX5 MUTATED"          
clus
  NOX5 MUTATED NOX5 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        4      0      1      0
  NOX5 WILD-TYPE    174    183    100     20
D526V3, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        3      0      1
  NOX5 WILD-TYPE     84     80     99
D526V4, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        1      0      3
  NOX5 WILD-TYPE     88    160    135
D526V5, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            0            160
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        3      0      1
  NOX5 WILD-TYPE    179    133     71
D526V6, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        0      1      3      1
  NOX5 WILD-TYPE    112     95     89    185
D526V7, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOX5 MUTATED        0      0      2      1      1      0      1
  NOX5 WILD-TYPE     60     50     47     39     62    125     98
D526V8, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        1      3      0      1
  NOX5 WILD-TYPE    129     75     68    195
D526V9, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NOX5 MUTATED        1      3      0      0      1      0      0      0      0
  NOX5 WILD-TYPE     39     59     28     80     68     48     43     28     74
D526V10, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        1      0      0      0
  NOX5 WILD-TYPE     32     31     27     19
D526V11, multiclass
[1] "Remove cluster labels:" "NOX5 MUTATED"          
clus
  NOX5 MUTATED NOX5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-G5-6641 
"NOX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        1      0      0      0
  NOX5 WILD-TYPE     53     10     24     22
D526V12, multiclass
[1] "Remove cluster labels:" "NOX5 MUTATED"          
clus
  NOX5 MUTATED NOX5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" "NOX5 WILD-TYPE" 
    TCGA-G5-6641 
"NOX5 WILD-TYPE" 

Clustering(527) Variable = HAS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAS2 MUTATED        0      0      0      3
  HAS2 WILD-TYPE     46     58     64     40
D527V1, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAS2 MUTATED        2      0      1
  HAS2 WILD-TYPE     49     83     76
D527V2, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAS2 MUTATED        9      0      1      0
  HAS2 WILD-TYPE    169    183    100     20
D527V3, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAS2 MUTATED        0      0      7
  HAS2 WILD-TYPE     87     80     93
D527V4, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAS2 MUTATED        2      4      3
  HAS2 WILD-TYPE     87    156    135
D527V5, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAS2 MUTATED        4      3      2
  HAS2 WILD-TYPE    178    130     70
D527V6, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAS2 MUTATED        1      6      0      3
  HAS2 WILD-TYPE    111     90     92    183
D527V7, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            0             92
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HAS2 MUTATED        2      3      3      0      0      0      2
  HAS2 WILD-TYPE     58     47     46     40     63    125     97
D527V8, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAS2 MUTATED        3      1      1      4
  HAS2 WILD-TYPE    127     77     67    192
D527V9, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HAS2 MUTATED        2      0      0      1      4      1      1      0      0
  HAS2 WILD-TYPE     38     62     28     79     65     47     42     28     74
D527V10, multiclass
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAS2 MUTATED        0      0      1      1
  HAS2 WILD-TYPE     33     31     26     18
D527V11, multiclass
[1] "Remove cluster labels:" "HAS2 MUTATED"          
clus
  HAS2 MUTATED HAS2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAS2 MUTATED        0      0      2      0
  HAS2 WILD-TYPE     54     10     22     22
D527V12, multiclass
[1] "Remove cluster labels:" "HAS2 MUTATED"          
clus
  HAS2 MUTATED HAS2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 

Clustering(528) Variable = INSM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        0      0      0      1
  INSM2 WILD-TYPE     46     58     64     42
D528V1, multiclass
[1] "Remove cluster labels:" "INSM2 MUTATED"         
clus
  INSM2 MUTATED INSM2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSM2 MUTATED        0      0      1
  INSM2 WILD-TYPE     51     83     76
D528V2, multiclass
[1] "Remove cluster labels:" "INSM2 MUTATED"         
clus
  INSM2 MUTATED INSM2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"INSM2 WILD-TYPE" "INSM2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        8      0      2      1
  INSM2 WILD-TYPE    170    183     99     19
D528V3, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSM2 MUTATED        3      0      7
  INSM2 WILD-TYPE     84     80     93
D528V4, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSM2 MUTATED        1      2      6
  INSM2 WILD-TYPE     88    158    132
D528V5, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSM2 MUTATED        6      3      0
  INSM2 WILD-TYPE    176    130     72
D528V6, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        0      5      5      1
  INSM2 WILD-TYPE    112     91     87    185
D528V7, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             5              87
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INSM2 MUTATED        1      1      8      0      1      0      0
  INSM2 WILD-TYPE     59     49     41     40     62    125     99
D528V8, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        6      3      0      2
  INSM2 WILD-TYPE    124     75     68    194
D528V9, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INSM2 MUTATED        1      3      0      0      6      0      1      0
  INSM2 WILD-TYPE     39     59     28     80     63     48     42     28
                 vv
clus              CLUS_9
  INSM2 MUTATED        0
  INSM2 WILD-TYPE     74
D528V10, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        2      0      0      2
  INSM2 WILD-TYPE     31     31     27     17
D528V11, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        3      0      1      0
  INSM2 WILD-TYPE     51     10     23     22
D528V12, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(529) Variable = SCLY MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLY MUTATED        2      0      1      0
  SCLY WILD-TYPE     44     58     63     43
D529V1, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCLY MUTATED        2      0      1
  SCLY WILD-TYPE     49     83     76
D529V2, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLY MUTATED        7      3      2      0
  SCLY WILD-TYPE    171    180     99     20
D529V3, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            7            171
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCLY MUTATED        3      1      6
  SCLY WILD-TYPE     84     79     94
D529V4, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCLY MUTATED        1      6      4
  SCLY WILD-TYPE     88    154    134
D529V5, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SCLY MUTATED        5      4      2
  SCLY WILD-TYPE    177    129     70
D529V6, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            5            177
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLY MUTATED        3      2      4      3
  SCLY WILD-TYPE    109     94     88    183
D529V7, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCLY MUTATED        2      1      5      0      1      1      2
  SCLY WILD-TYPE     58     49     44     40     62    124     97
D529V8, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLY MUTATED        6      2      1      3
  SCLY WILD-TYPE    124     76     67    193
D529V9, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SCLY MUTATED        1      4      1      2      1      1      1      1      0
  SCLY WILD-TYPE     39     58     27     78     68     47     42     27     74
D529V10, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLY MUTATED        0      0      1      2
  SCLY WILD-TYPE     33     31     26     17
D529V11, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLY MUTATED        1      0      2      0
  SCLY WILD-TYPE     53     10     22     22
D529V12, multiclass
        clus
vv       SCLY MUTATED SCLY WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(530) Variable = CDK17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK17 MUTATED        0      0      0      4
  CDK17 WILD-TYPE     46     58     64     39
D530V1, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK17 MUTATED        2      1      1
  CDK17 WILD-TYPE     49     82     76
D530V2, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK17 MUTATED        9      2      0      0
  CDK17 WILD-TYPE    169    181    101     20
D530V3, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK17 MUTATED        2      1      4
  CDK17 WILD-TYPE     85     79     96
D530V4, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK17 MUTATED        1      3      4
  CDK17 WILD-TYPE     88    157    134
D530V5, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK17 MUTATED        4      4      0
  CDK17 WILD-TYPE    178    129     72
D530V6, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK17 MUTATED        2      4      1      3
  CDK17 WILD-TYPE    110     92     91    183
D530V7, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDK17 MUTATED        0      3      3      1      0      0      3
  CDK17 WILD-TYPE     60     47     46     39     63    125     96
D530V8, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK17 MUTATED        4      2      1      3
  CDK17 WILD-TYPE    126     76     67    193
D530V9, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDK17 MUTATED        1      1      1      1      2      0      2      1
  CDK17 WILD-TYPE     39     61     27     79     67     48     41     27
                 vv
clus              CLUS_9
  CDK17 MUTATED        1
  CDK17 WILD-TYPE     73
D530V10, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK17 MUTATED        1      0      0      2
  CDK17 WILD-TYPE     32     31     27     17
D530V11, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK17 MUTATED        2      0      1      0
  CDK17 WILD-TYPE     52     10     23     22
D530V12, multiclass
        clus
vv       CDK17 MUTATED CDK17 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(531) Variable = GOLPH3L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLPH3L MUTATED        0      0      1      1
  GOLPH3L WILD-TYPE     46     58     63     42
D531V1, multiclass
[1] "Remove cluster labels:" "GOLPH3L MUTATED"       
clus
  GOLPH3L MUTATED GOLPH3L WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3530        TCGA-AA-3531 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AY-4071 
"GOLPH3L WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GOLPH3L MUTATED        0      0      2
  GOLPH3L WILD-TYPE     51     83     75
D531V2, multiclass
[1] "Remove cluster labels:" "GOLPH3L MUTATED"       
clus
  GOLPH3L MUTATED GOLPH3L WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3530        TCGA-AA-3531 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AY-4071 
"GOLPH3L WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLPH3L MUTATED        3      2      1      0
  GOLPH3L WILD-TYPE    175    181    100     20
D531V3, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               3               175
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GOLPH3L MUTATED        1      1      2
  GOLPH3L WILD-TYPE     86     79     98
D531V4, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GOLPH3L MUTATED        2      2      2
  GOLPH3L WILD-TYPE     87    158    136
D531V5, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GOLPH3L MUTATED        3      3      0
  GOLPH3L WILD-TYPE    179    130     72
D531V6, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLPH3L MUTATED        1      3      0      2
  GOLPH3L WILD-TYPE    111     93     92    184
D531V7, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GOLPH3L MUTATED        1      3      0      0      1      1      0
  GOLPH3L WILD-TYPE     59     47     49     40     62    124     99
D531V8, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLPH3L MUTATED        1      1      1      3
  GOLPH3L WILD-TYPE    129     77     67    193
D531V9, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GOLPH3L MUTATED        1      1      0      1      1      0      1      0
  GOLPH3L WILD-TYPE     39     61     28     79     68     48     42     28
                   vv
clus                CLUS_9
  GOLPH3L MUTATED        1
  GOLPH3L WILD-TYPE     73
D531V10, multiclass
        clus
vv       GOLPH3L MUTATED GOLPH3L WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLPH3L MUTATED        0      1      0      0
  GOLPH3L WILD-TYPE     33     30     27     19
D531V11, multiclass
[1] "Remove cluster labels:" "GOLPH3L MUTATED"       
clus
  GOLPH3L MUTATED GOLPH3L WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6306 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-G5-6641 
"GOLPH3L WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLPH3L MUTATED        0      1      0      0
  GOLPH3L WILD-TYPE     54      9     24     22
D531V12, multiclass
[1] "Remove cluster labels:" "GOLPH3L MUTATED"       
clus
  GOLPH3L MUTATED GOLPH3L WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6306 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" "GOLPH3L WILD-TYPE" 
       TCGA-G5-6641 
"GOLPH3L WILD-TYPE" 

Clustering(532) Variable = GGTLC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGTLC2 MUTATED        0      0      0      0
  GGTLC2 WILD-TYPE     46     58     64     43
D532V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGTLC2 MUTATED        0      0      0
  GGTLC2 WILD-TYPE     51     83     77
D532V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGTLC2 MUTATED        4      2      1      0
  GGTLC2 WILD-TYPE    174    181    100     20
D532V3, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGTLC2 MUTATED        1      0      6
  GGTLC2 WILD-TYPE     86     80     94
D532V4, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGTLC2 MUTATED        0      2      4
  GGTLC2 WILD-TYPE     89    158    134
D532V5, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGTLC2 MUTATED        3      3      0
  GGTLC2 WILD-TYPE    179    130     72
D532V6, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGTLC2 MUTATED        1      5      1      0
  GGTLC2 WILD-TYPE    111     91     91    186
D532V7, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GGTLC2 MUTATED        1      2      3      1      0      0      0
  GGTLC2 WILD-TYPE     59     48     46     39     63    125     99
D532V8, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGTLC2 MUTATED        4      0      1      2
  GGTLC2 WILD-TYPE    126     78     67    194
D532V9, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GGTLC2 MUTATED        3      0      0      0      2      0      2      0
  GGTLC2 WILD-TYPE     37     62     28     80     67     48     41     28
                  vv
clus               CLUS_9
  GGTLC2 MUTATED        0
  GGTLC2 WILD-TYPE     74
D532V10, multiclass
        clus
vv       GGTLC2 MUTATED GGTLC2 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGTLC2 MUTATED        0      0      1      0
  GGTLC2 WILD-TYPE     33     31     26     19
D532V11, multiclass
[1] "Remove cluster labels:" "GGTLC2 MUTATED"        
clus
  GGTLC2 MUTATED GGTLC2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-G5-6641 
"GGTLC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGTLC2 MUTATED        0      0      1      0
  GGTLC2 WILD-TYPE     54     10     23     22
D532V12, multiclass
[1] "Remove cluster labels:" "GGTLC2 MUTATED"        
clus
  GGTLC2 MUTATED GGTLC2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" "GGTLC2 WILD-TYPE" 
      TCGA-G5-6641 
"GGTLC2 WILD-TYPE" 

Clustering(533) Variable = SYNCRIP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        0      1      0      3
  SYNCRIP WILD-TYPE     46     57     64     40
D533V1, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        0      2      2
  SYNCRIP WILD-TYPE     51     81     75
D533V2, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        8      3      1      0
  SYNCRIP WILD-TYPE    170    180    100     20
D533V3, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               8               170
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        5      0      3
  SYNCRIP WILD-TYPE     82     80     97
D533V4, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        1      6      4
  SYNCRIP WILD-TYPE     88    154    134
D533V5, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        3      6      2
  SYNCRIP WILD-TYPE    179    127     70
D533V6, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               3               179
  CLUS_2               6               127
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        1      3      4      4
  SYNCRIP WILD-TYPE    111     93     88    182
D533V7, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               4                88
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNCRIP MUTATED        2      2      2      0      3      1      2
  SYNCRIP WILD-TYPE     58     48     47     40     60    124     97
D533V8, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        5      3      0      3
  SYNCRIP WILD-TYPE    125     75     68    193
D533V9, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               5               125
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SYNCRIP MUTATED        1      3      2      2      2      1      0      0
  SYNCRIP WILD-TYPE     39     59     26     78     67     47     43     28
                   vv
clus                CLUS_9
  SYNCRIP MUTATED        0
  SYNCRIP WILD-TYPE     74
D533V10, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        0      1      0      2
  SYNCRIP WILD-TYPE     33     30     27     17
D533V11, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        2      0      0      1
  SYNCRIP WILD-TYPE     52     10     24     21
D533V12, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(534) Variable = IFITM3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM3 MUTATED        0      0      0      0
  IFITM3 WILD-TYPE     46     58     64     43
D534V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM3 MUTATED        0      0      0
  IFITM3 WILD-TYPE     51     83     77
D534V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM3 MUTATED        4      2      2      0
  IFITM3 WILD-TYPE    174    181     99     20
D534V3, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM3 MUTATED        4      3      1
  IFITM3 WILD-TYPE     83     77     99
D534V4, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM3 MUTATED        0      2      5
  IFITM3 WILD-TYPE     89    158    133
D534V5, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM3 MUTATED        6      1      0
  IFITM3 WILD-TYPE    176    132     72
D534V6, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM3 MUTATED        2      3      3      0
  IFITM3 WILD-TYPE    110     93     89    186
D534V7, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFITM3 MUTATED        2      1      1      2      2      0      0
  IFITM3 WILD-TYPE     58     49     48     38     61    125     99
D534V8, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM3 MUTATED        6      1      1      0
  IFITM3 WILD-TYPE    124     77     67    196
D534V9, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFITM3 MUTATED        4      1      0      1      0      1      1      0
  IFITM3 WILD-TYPE     36     61     28     79     69     47     42     28
                  vv
clus               CLUS_9
  IFITM3 MUTATED        0
  IFITM3 WILD-TYPE     74
D534V10, multiclass
        clus
vv       IFITM3 MUTATED IFITM3 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM3 MUTATED        0      0      2      0
  IFITM3 WILD-TYPE     33     31     25     19
D534V11, multiclass
[1] "Remove cluster labels:" "IFITM3 MUTATED"        
clus
  IFITM3 MUTATED IFITM3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM3 MUTATED        0      1      1      0
  IFITM3 WILD-TYPE     54      9     23     22
D534V12, multiclass
[1] "Remove cluster labels:" "IFITM3 MUTATED"        
clus
  IFITM3 MUTATED IFITM3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" "IFITM3 WILD-TYPE" 

Clustering(535) Variable = SMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED        2      0      0      5
  SMG1 WILD-TYPE     44     58     64     38
D535V1, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG1 MUTATED        4      1      2
  SMG1 WILD-TYPE     47     82     75
D535V2, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED       19      5      3      0
  SMG1 WILD-TYPE    159    178     98     20
D535V3, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1           19            159
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG1 MUTATED       10      1      8
  SMG1 WILD-TYPE     77     79     92
D535V4, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1           10             77
  CLUS_2            1             79
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG1 MUTATED        3     10     10
  SMG1 WILD-TYPE     86    150    128
D535V5, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           10            150
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG1 MUTATED        7     10      6
  SMG1 WILD-TYPE    175    123     66
D535V6, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2           10            123
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED        5      7      7      8
  SMG1 WILD-TYPE    107     89     85    178
D535V7, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            7             89
  CLUS_3            7             85
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMG1 MUTATED        5      2      6      2      4      0      8
  SMG1 WILD-TYPE     55     48     43     38     59    125     91
D535V8, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED       10      4      2      9
  SMG1 WILD-TYPE    120     74     66    187
D535V9, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            4             74
  CLUS_3            2             66
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMG1 MUTATED        3      3      1      3      9      3      2      1      0
  SMG1 WILD-TYPE     37     59     27     77     60     45     41     27     74
D535V10, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            9             60
  CLUS_6            3             45
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED        2      1      0      3
  SMG1 WILD-TYPE     31     30     27     16
D535V11, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED        2      0      2      2
  SMG1 WILD-TYPE     52     10     22     20
D535V12, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(536) Variable = RBL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        4      0      0      4
  RBL2 WILD-TYPE     42     58     64     39
D536V1, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        6      1      1
  RBL2 WILD-TYPE     45     82     76
D536V2, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED       16      5      1      1
  RBL2 WILD-TYPE    162    178    100     19
D536V3, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        5      0     10
  RBL2 WILD-TYPE     82     80     90
D536V4, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED        2      8     10
  RBL2 WILD-TYPE     87    152    128
D536V5, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            8            152
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL2 MUTATED       10      6      4
  RBL2 WILD-TYPE    172    127     68
D536V6, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            6            127
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        2      5      7      8
  RBL2 WILD-TYPE    110     91     85    178
D536V7, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            7             85
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBL2 MUTATED        3      1      6      2      2      0      8
  RBL2 WILD-TYPE     57     49     43     38     61    125     91
D536V8, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        7      5      0     10
  RBL2 WILD-TYPE    123     73     68    186
D536V9, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            5             73
  CLUS_3            0             68
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBL2 MUTATED        1      7      4      2      6      0      0      0      2
  RBL2 WILD-TYPE     39     55     24     78     63     48     43     28     72
D536V10, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            7             55
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        1      0      1      2
  RBL2 WILD-TYPE     32     31     26     17
D536V11, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL2 MUTATED        3      1      0      0
  RBL2 WILD-TYPE     51      9     24     22
D536V12, multiclass
        clus
vv       RBL2 MUTATED RBL2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(537) Variable = CASC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC1 MUTATED        3      0      0      3
  CASC1 WILD-TYPE     43     58     64     40
D537V1, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC1 MUTATED        2      1      3
  CASC1 WILD-TYPE     49     82     74
D537V2, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC1 MUTATED        9      1      3      1
  CASC1 WILD-TYPE    169    182     98     19
D537V3, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC1 MUTATED        3      2      3
  CASC1 WILD-TYPE     84     78     97
D537V4, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC1 MUTATED        2      5      3
  CASC1 WILD-TYPE     87    155    135
D537V5, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC1 MUTATED        4      4      2
  CASC1 WILD-TYPE    178    129     70
D537V6, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC1 MUTATED        3      4      1      6
  CASC1 WILD-TYPE    109     92     91    180
D537V7, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASC1 MUTATED        2      1      2      1      3      0      5
  CASC1 WILD-TYPE     58     49     47     39     60    125     94
D537V8, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC1 MUTATED        4      3      1      6
  CASC1 WILD-TYPE    126     75     67    190
D537V9, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASC1 MUTATED        1      3      2      1      4      2      1      0
  CASC1 WILD-TYPE     39     59     26     79     65     46     42     28
                 vv
clus              CLUS_9
  CASC1 MUTATED        0
  CASC1 WILD-TYPE     74
D537V10, multiclass
        clus
vv       CASC1 MUTATED CASC1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC1 MUTATED        2      0      0      0
  CASC1 WILD-TYPE     31     31     27     19
D537V11, multiclass
[1] "Remove cluster labels:" "CASC1 MUTATED"         
clus
  CASC1 MUTATED CASC1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6677 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC1 MUTATED        1      0      0      1
  CASC1 WILD-TYPE     53     10     24     21
D537V12, multiclass
[1] "Remove cluster labels:" "CASC1 MUTATED"         
clus
  CASC1 MUTATED CASC1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6677 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" "CASC1 WILD-TYPE" 

Clustering(538) Variable = LNX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNX2 MUTATED        3      0      0      4
  LNX2 WILD-TYPE     43     58     64     39
D538V1, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LNX2 MUTATED        5      0      2
  LNX2 WILD-TYPE     46     83     75
D538V2, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNX2 MUTATED       11      4      2      1
  LNX2 WILD-TYPE    167    179     99     19
D538V3, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LNX2 MUTATED        4      4      2
  LNX2 WILD-TYPE     83     76     98
D538V4, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LNX2 MUTATED        2      8      6
  LNX2 WILD-TYPE     87    152    132
D538V5, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            8            152
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LNX2 MUTATED        7      7      2
  LNX2 WILD-TYPE    175    126     70
D538V6, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            7            126
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNX2 MUTATED        4      2      4      8
  LNX2 WILD-TYPE    108     94     88    178
D538V7, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LNX2 MUTATED        4      1      4      0      2      0      7
  LNX2 WILD-TYPE     56     49     45     40     61    125     92
D538V8, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNX2 MUTATED        5      4      2      5
  LNX2 WILD-TYPE    125     74     66    191
D538V9, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            4             74
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LNX2 MUTATED        1      3      0      2      4      2      2      2      0
  LNX2 WILD-TYPE     39     59     28     78     65     46     41     26     74
D538V10, multiclass
        clus
vv       LNX2 MUTATED LNX2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            4             65
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            2             26
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNX2 MUTATED        0      0      0      2
  LNX2 WILD-TYPE     33     31     27     17
D538V11, multiclass
[1] "Remove cluster labels:" "LNX2 MUTATED"          
clus
  LNX2 MUTATED LNX2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNX2 MUTATED        1      0      0      1
  LNX2 WILD-TYPE     53     10     24     21
D538V12, multiclass
[1] "Remove cluster labels:" "LNX2 MUTATED"          
clus
  LNX2 MUTATED LNX2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" "LNX2 WILD-TYPE" 

Clustering(539) Variable = N4BP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED        4      0      1      2
  N4BP2 WILD-TYPE     42     58     63     41
D539V1, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  N4BP2 MUTATED        3      2      2
  N4BP2 WILD-TYPE     48     81     75
D539V2, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED       21      4      1      1
  N4BP2 WILD-TYPE    157    179    100     19
D539V3, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  N4BP2 MUTATED        7      3     11
  N4BP2 WILD-TYPE     80     77     89
D539V4, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             3              77
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  N4BP2 MUTATED        1     12     12
  N4BP2 WILD-TYPE     88    148    126
D539V5, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2            12             148
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  N4BP2 MUTATED       11     12      2
  N4BP2 WILD-TYPE    171    121     70
D539V6, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1            11             171
  CLUS_2            12             121
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED        6      6      8      7
  N4BP2 WILD-TYPE    106     90     84    179
D539V7, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             6              90
  CLUS_3             8              84
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  N4BP2 MUTATED        6      3      8      1      3      2      4
  N4BP2 WILD-TYPE     54     47     41     39     60    123     95
D539V8, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED       11      4      2      9
  N4BP2 WILD-TYPE    119     74     66    187
D539V9, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  N4BP2 MUTATED        1      6      2      4      6      2      4      0
  N4BP2 WILD-TYPE     39     56     26     76     63     46     39     28
                 vv
clus              CLUS_9
  N4BP2 MUTATED        1
  N4BP2 WILD-TYPE     73
D539V10, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             6              63
  CLUS_6             2              46
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED        1      1      1      5
  N4BP2 WILD-TYPE     32     30     26     14
D539V11, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  N4BP2 MUTATED        5      0      2      1
  N4BP2 WILD-TYPE     49     10     22     21
D539V12, multiclass
        clus
vv       N4BP2 MUTATED N4BP2 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(540) Variable = KRT14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT14 MUTATED        0      0      0      1
  KRT14 WILD-TYPE     46     58     64     42
D540V1, multiclass
[1] "Remove cluster labels:" "KRT14 MUTATED"         
clus
  KRT14 MUTATED KRT14 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT14 MUTATED        0      0      1
  KRT14 WILD-TYPE     51     83     76
D540V2, multiclass
[1] "Remove cluster labels:" "KRT14 MUTATED"         
clus
  KRT14 MUTATED KRT14 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT14 MUTATED        6      2      1      0
  KRT14 WILD-TYPE    172    181    100     20
D540V3, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT14 MUTATED        2      2      4
  KRT14 WILD-TYPE     85     78     96
D540V4, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT14 MUTATED        1      4      2
  KRT14 WILD-TYPE     88    156    136
D540V5, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT14 MUTATED        2      5      0
  KRT14 WILD-TYPE    180    128     72
D540V6, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT14 MUTATED        2      4      2      1
  KRT14 WILD-TYPE    110     92     90    185
D540V7, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT14 MUTATED        2      2      4      1      0      0      0
  KRT14 WILD-TYPE     58     48     45     39     63    125     99
D540V8, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT14 MUTATED        3      2      2      2
  KRT14 WILD-TYPE    127     76     66    194
D540V9, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRT14 MUTATED        1      1      0      3      2      0      1      0
  KRT14 WILD-TYPE     39     61     28     77     67     48     42     28
                 vv
clus              CLUS_9
  KRT14 MUTATED        1
  KRT14 WILD-TYPE     73
D540V10, multiclass
        clus
vv       KRT14 MUTATED KRT14 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT14 MUTATED        2      0      0      0
  KRT14 WILD-TYPE     31     31     27     19
D540V11, multiclass
[1] "Remove cluster labels:" "KRT14 MUTATED"         
clus
  KRT14 MUTATED KRT14 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT14 MUTATED        2      0      0      0
  KRT14 WILD-TYPE     52     10     24     22
D540V12, multiclass
[1] "Remove cluster labels:" "KRT14 MUTATED"         
clus
  KRT14 MUTATED KRT14 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" "KRT14 WILD-TYPE" 

Clustering(541) Variable = LNPEP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNPEP MUTATED        4      0      0      3
  LNPEP WILD-TYPE     42     58     64     40
D541V1, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LNPEP MUTATED        4      2      1
  LNPEP WILD-TYPE     47     81     76
D541V2, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNPEP MUTATED       15      2      2      0
  LNPEP WILD-TYPE    163    181     99     20
D541V3, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1            15             163
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LNPEP MUTATED        4      2      6
  LNPEP WILD-TYPE     83     78     94
D541V4, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LNPEP MUTATED        5      6      5
  LNPEP WILD-TYPE     84    154    133
D541V5, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             5              84
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LNPEP MUTATED        5      6      5
  LNPEP WILD-TYPE    177    127     67
D541V6, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNPEP MUTATED        2      8      2      7
  LNPEP WILD-TYPE    110     88     90    179
D541V7, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LNPEP MUTATED        2      4      5      1      1      1      5
  LNPEP WILD-TYPE     58     46     44     39     62    124     94
D541V8, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNPEP MUTATED        7      2      1      8
  LNPEP WILD-TYPE    123     76     67    188
D541V9, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LNPEP MUTATED        2      3      2      1      8      0      1      0
  LNPEP WILD-TYPE     38     59     26     79     61     48     42     28
                 vv
clus              CLUS_9
  LNPEP MUTATED        1
  LNPEP WILD-TYPE     73
D541V10, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNPEP MUTATED        0      0      0      4
  LNPEP WILD-TYPE     33     31     27     15
D541V11, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LNPEP MUTATED        2      0      2      0
  LNPEP WILD-TYPE     52     10     22     22
D541V12, multiclass
        clus
vv       LNPEP MUTATED LNPEP WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(542) Variable = SP110 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP110 MUTATED        1      0      0      0
  SP110 WILD-TYPE     45     58     64     43
D542V1, multiclass
[1] "Remove cluster labels:" "SP110 MUTATED"         
clus
  SP110 MUTATED SP110 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP110 MUTATED        1      0      0
  SP110 WILD-TYPE     50     83     77
D542V2, multiclass
[1] "Remove cluster labels:" "SP110 MUTATED"         
clus
  SP110 MUTATED SP110 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP110 MUTATED        3      4      2      1
  SP110 WILD-TYPE    175    179     99     19
D542V3, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP110 MUTATED        4      2      3
  SP110 WILD-TYPE     83     78     97
D542V4, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP110 MUTATED        1      5      3
  SP110 WILD-TYPE     88    155    135
D542V5, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP110 MUTATED        3      3      3
  SP110 WILD-TYPE    179    130     69
D542V6, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP110 MUTATED        3      4      2      1
  SP110 WILD-TYPE    109     92     90    185
D542V7, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP110 MUTATED        2      1      3      1      2      0      1
  SP110 WILD-TYPE     58     49     46     39     61    125     98
D542V8, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP110 MUTATED        5      3      1      1
  SP110 WILD-TYPE    125     75     67    195
D542V9, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SP110 MUTATED        2      3      1      0      2      1      1      0
  SP110 WILD-TYPE     38     59     27     80     67     47     42     28
                 vv
clus              CLUS_9
  SP110 MUTATED        0
  SP110 WILD-TYPE     74
D542V10, multiclass
        clus
vv       SP110 MUTATED SP110 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP110 MUTATED        1      0      0      1
  SP110 WILD-TYPE     32     31     27     18
D542V11, multiclass
[1] "Remove cluster labels:" "SP110 MUTATED"         
clus
  SP110 MUTATED SP110 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1HA 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP110 MUTATED        0      0      1      1
  SP110 WILD-TYPE     54     10     23     21
D542V12, multiclass
[1] "Remove cluster labels:" "SP110 MUTATED"         
clus
  SP110 MUTATED SP110 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1HA 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" "SP110 WILD-TYPE" 

Clustering(543) Variable = C5ORF34 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF34 MUTATED        1      0      0      2
  C5ORF34 WILD-TYPE     45     58     64     41
D543V1, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF34 MUTATED        2      0      1
  C5ORF34 WILD-TYPE     49     83     76
D543V2, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF34 MUTATED        8      2      1      0
  C5ORF34 WILD-TYPE    170    181    100     20
D543V3, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF34 MUTATED        3      1      5
  C5ORF34 WILD-TYPE     84     79     95
D543V4, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF34 MUTATED        0      3      9
  C5ORF34 WILD-TYPE     89    157    129
D543V5, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF34 MUTATED        9      3      0
  C5ORF34 WILD-TYPE    173    130     72
D543V6, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF34 MUTATED        1      4      4      3
  C5ORF34 WILD-TYPE    111     92     88    183
D543V7, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               4                88
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C5ORF34 MUTATED        1      2      5      1      1      0      2
  C5ORF34 WILD-TYPE     59     48     44     39     62    125     97
D543V8, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF34 MUTATED        4      3      1      3
  C5ORF34 WILD-TYPE    126     75     67    193
D543V9, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C5ORF34 MUTATED        0      4      1      0      5      1      0      0
  C5ORF34 WILD-TYPE     40     58     27     80     64     47     43     28
                   vv
clus                CLUS_9
  C5ORF34 MUTATED        0
  C5ORF34 WILD-TYPE     74
D543V10, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF34 MUTATED        1      0      1      1
  C5ORF34 WILD-TYPE     32     31     26     18
D543V11, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF34 MUTATED        0      0      2      1
  C5ORF34 WILD-TYPE     54     10     22     21
D543V12, multiclass
        clus
vv       C5ORF34 MUTATED C5ORF34 WILD-TYPE
  CLUS_1               0                54
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(544) Variable = ADORA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        0      1      1      1
  ADORA3 WILD-TYPE     46     57     63     42
D544V1, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        1      2      0
  ADORA3 WILD-TYPE     50     81     77
D544V2, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        6      6      2      1
  ADORA3 WILD-TYPE    172    177     99     19
D544V3, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              6              177
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        4      2      6
  ADORA3 WILD-TYPE     83     78     94
D544V4, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        6      2      6
  ADORA3 WILD-TYPE     83    158    132
D544V5, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              2              158
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADORA3 MUTATED        8      2      4
  ADORA3 WILD-TYPE    174    131     68
D544V6, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              2              131
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        5      2      6      2
  ADORA3 WILD-TYPE    107     94     86    184
D544V7, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              2               94
  CLUS_3              6               86
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADORA3 MUTATED        4      1      4      0      3      2      1
  ADORA3 WILD-TYPE     56     49     45     40     60    123     98
D544V8, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        6      2      4      3
  ADORA3 WILD-TYPE    124     76     64    193
D544V9, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              4               64
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADORA3 MUTATED        3      3      0      1      3      0      3      0
  ADORA3 WILD-TYPE     37     59     28     79     66     48     40     28
                  vv
clus               CLUS_9
  ADORA3 MUTATED        2
  ADORA3 WILD-TYPE     72
D544V10, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        2      1      1      3
  ADORA3 WILD-TYPE     31     30     26     16
D544V11, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADORA3 MUTATED        4      0      1      2
  ADORA3 WILD-TYPE     50     10     23     20
D544V12, multiclass
        clus
vv       ADORA3 MUTATED ADORA3 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(545) Variable = MAP2K4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K4 MUTATED        4      1      3      4
  MAP2K4 WILD-TYPE     42     57     61     39
D545V1, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              3               61
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K4 MUTATED        5      3      4
  MAP2K4 WILD-TYPE     46     80     73
D545V2, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              3               80
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K4 MUTATED       18      9      3      3
  MAP2K4 WILD-TYPE    160    174     98     17
D545V3, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              9              174
  CLUS_3              3               98
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K4 MUTATED        7      1     14
  MAP2K4 WILD-TYPE     80     79     86
D545V4, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3             14               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K4 MUTATED        4     13     11
  MAP2K4 WILD-TYPE     85    147    127
D545V5, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             13              147
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K4 MUTATED       10     12      6
  MAP2K4 WILD-TYPE    172    121     66
D545V6, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1             10              172
  CLUS_2             12              121
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K4 MUTATED        3     11      9     11
  MAP2K4 WILD-TYPE    109     85     83    175
D545V7, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2             11               85
  CLUS_3              9               83
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP2K4 MUTATED        3      4      9      3      3      5      7
  MAP2K4 WILD-TYPE     57     46     40     37     60    120     92
D545V8, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              4               46
  CLUS_3              9               40
  CLUS_4              3               37
  CLUS_5              3               60
  CLUS_6              5              120
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K4 MUTATED       14      6      0     12
  MAP2K4 WILD-TYPE    116     72     68    184
D545V9, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              6               72
  CLUS_3              0               68
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP2K4 MUTATED        6      3      3      3      9      4      1      2
  MAP2K4 WILD-TYPE     34     59     25     77     60     44     42     26
                  vv
clus               CLUS_9
  MAP2K4 MUTATED        1
  MAP2K4 WILD-TYPE     73
D545V10, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              6               34
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              4               44
  CLUS_7              1               42
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K4 MUTATED        4      1      0      5
  MAP2K4 WILD-TYPE     29     30     27     14
D545V11, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K4 MUTATED        6      1      2      1
  MAP2K4 WILD-TYPE     48      9     22     21
D545V12, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(546) Variable = OVGP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVGP1 MUTATED        1      0      0      2
  OVGP1 WILD-TYPE     45     58     64     41
D546V1, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVGP1 MUTATED        2      0      1
  OVGP1 WILD-TYPE     49     83     76
D546V2, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVGP1 MUTATED       10      6      1      0
  OVGP1 WILD-TYPE    168    177    100     20
D546V3, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             6             177
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVGP1 MUTATED        5      3      6
  OVGP1 WILD-TYPE     82     77     94
D546V4, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVGP1 MUTATED        3      7      4
  OVGP1 WILD-TYPE     86    153    134
D546V5, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OVGP1 MUTATED        6      6      2
  OVGP1 WILD-TYPE    176    127     70
D546V6, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVGP1 MUTATED        5      3      4      5
  OVGP1 WILD-TYPE    107     93     88    181
D546V7, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OVGP1 MUTATED        5      1      3      1      3      1      3
  OVGP1 WILD-TYPE     55     49     46     39     60    124     96
D546V8, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVGP1 MUTATED        8      4      0      4
  OVGP1 WILD-TYPE    122     74     68    192
D546V9, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OVGP1 MUTATED        3      5      1      1      4      0      0      0
  OVGP1 WILD-TYPE     37     57     27     79     65     48     43     28
                 vv
clus              CLUS_9
  OVGP1 MUTATED        2
  OVGP1 WILD-TYPE     72
D546V10, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVGP1 MUTATED        1      1      0      3
  OVGP1 WILD-TYPE     32     30     27     16
D546V11, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OVGP1 MUTATED        3      1      1      0
  OVGP1 WILD-TYPE     51      9     23     22
D546V12, multiclass
        clus
vv       OVGP1 MUTATED OVGP1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(547) Variable = GOLGB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGB1 MUTATED        3      0      1      7
  GOLGB1 WILD-TYPE     43     58     63     36
D547V1, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              7               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGB1 MUTATED        6      2      3
  GOLGB1 WILD-TYPE     45     81     74
D547V2, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              6               45
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGB1 MUTATED       27      7      7      1
  GOLGB1 WILD-TYPE    151    176     94     19
D547V3, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1             27              151
  CLUS_2              7              176
  CLUS_3              7               94
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGB1 MUTATED       12      5     14
  GOLGB1 WILD-TYPE     75     75     86
D547V4, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1             12               75
  CLUS_2              5               75
  CLUS_3             14               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGB1 MUTATED        7     12     18
  GOLGB1 WILD-TYPE     82    148    120
D547V5, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              7               82
  CLUS_2             12              148
  CLUS_3             18              120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGB1 MUTATED       20     12      5
  GOLGB1 WILD-TYPE    162    121     67
D547V6, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1             20              162
  CLUS_2             12              121
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGB1 MUTATED        8     10     12     12
  GOLGB1 WILD-TYPE    104     86     80    174
D547V7, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              8              104
  CLUS_2             10               86
  CLUS_3             12               80
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GOLGB1 MUTATED        8      8      6      1      7      2     10
  GOLGB1 WILD-TYPE     52     42     43     39     56    123     89
D547V8, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              8               52
  CLUS_2              8               42
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              7               56
  CLUS_6              2              123
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGB1 MUTATED       13      8      3     17
  GOLGB1 WILD-TYPE    117     70     65    179
D547V9, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1             13              117
  CLUS_2              8               70
  CLUS_3              3               65
  CLUS_4             17              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GOLGB1 MUTATED        5      8      4      3     11      6      2      0
  GOLGB1 WILD-TYPE     35     54     24     77     58     42     41     28
                  vv
clus               CLUS_9
  GOLGB1 MUTATED        2
  GOLGB1 WILD-TYPE     72
D547V10, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              5               35
  CLUS_2              8               54
  CLUS_3              4               24
  CLUS_4              3               77
  CLUS_5             11               58
  CLUS_6              6               42
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGB1 MUTATED        5      2      0      5
  GOLGB1 WILD-TYPE     28     29     27     14
D547V11, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGB1 MUTATED        9      0      1      2
  GOLGB1 WILD-TYPE     45     10     23     20
D547V12, multiclass
        clus
vv       GOLGB1 MUTATED GOLGB1 WILD-TYPE
  CLUS_1              9               45
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(548) Variable = SYT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT1 MUTATED        0      0      0      1
  SYT1 WILD-TYPE     46     58     64     42
D548V1, multiclass
[1] "Remove cluster labels:" "SYT1 MUTATED"          
clus
  SYT1 MUTATED SYT1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT1 MUTATED        0      1      0
  SYT1 WILD-TYPE     51     82     77
D548V2, multiclass
[1] "Remove cluster labels:" "SYT1 MUTATED"          
clus
  SYT1 MUTATED SYT1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT1 MUTATED       10      3      0      0
  SYT1 WILD-TYPE    168    180    101     20
D548V3, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT1 MUTATED        4      3      5
  SYT1 WILD-TYPE     83     77     95
D548V4, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT1 MUTATED        1      5      7
  SYT1 WILD-TYPE     88    155    131
D548V5, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT1 MUTATED        7      5      1
  SYT1 WILD-TYPE    175    128     71
D548V6, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT1 MUTATED        3      6      2      2
  SYT1 WILD-TYPE    109     90     90    184
D548V7, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYT1 MUTATED        1      5      3      1      1      0      2
  SYT1 WILD-TYPE     59     45     46     39     62    125     97
D548V8, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            5             45
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT1 MUTATED        9      1      1      2
  SYT1 WILD-TYPE    121     77     67    194
D548V9, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SYT1 MUTATED        3      2      1      2      1      0      3      0      1
  SYT1 WILD-TYPE     37     60     27     78     68     48     40     28     73
D548V10, multiclass
        clus
vv       SYT1 MUTATED SYT1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT1 MUTATED        1      0      0      0
  SYT1 WILD-TYPE     32     31     27     19
D548V11, multiclass
[1] "Remove cluster labels:" "SYT1 MUTATED"          
clus
  SYT1 MUTATED SYT1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-G5-6641 
"SYT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT1 MUTATED        1      0      0      0
  SYT1 WILD-TYPE     53     10     24     22
D548V12, multiclass
[1] "Remove cluster labels:" "SYT1 MUTATED"          
clus
  SYT1 MUTATED SYT1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" "SYT1 WILD-TYPE" 
    TCGA-G5-6641 
"SYT1 WILD-TYPE" 

Clustering(549) Variable = UVRAG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        1      0      0      1
  UVRAG WILD-TYPE     45     58     64     42
D549V1, multiclass
[1] "Remove cluster labels:" "UVRAG MUTATED"         
clus
  UVRAG MUTATED UVRAG WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AY-4071 
"UVRAG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UVRAG MUTATED        0      1      1
  UVRAG WILD-TYPE     51     82     76
D549V2, multiclass
[1] "Remove cluster labels:" "UVRAG MUTATED"         
clus
  UVRAG MUTATED UVRAG WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" "UVRAG WILD-TYPE" 
     TCGA-AY-4071 
"UVRAG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        6      2      2      1
  UVRAG WILD-TYPE    172    181     99     19
D549V3, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UVRAG MUTATED        6      1      2
  UVRAG WILD-TYPE     81     79     98
D549V4, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UVRAG MUTATED        1      5      2
  UVRAG WILD-TYPE     88    155    136
D549V5, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UVRAG MUTATED        4      3      1
  UVRAG WILD-TYPE    178    130     71
D549V6, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        3      0      5      3
  UVRAG WILD-TYPE    109     96     87    183
D549V7, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             3             109
  CLUS_2             0              96
  CLUS_3             5              87
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UVRAG MUTATED        2      0      1      2      4      1      1
  UVRAG WILD-TYPE     58     50     48     38     59    124     98
D549V8, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        3      5      0      3
  UVRAG WILD-TYPE    127     73     68    193
D549V9, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             3             127
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UVRAG MUTATED        1      4      0      3      1      1      0      0
  UVRAG WILD-TYPE     39     58     28     77     68     47     43     28
                 vv
clus              CLUS_9
  UVRAG MUTATED        1
  UVRAG WILD-TYPE     73
D549V10, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        0      2      0      1
  UVRAG WILD-TYPE     33     29     27     18
D549V11, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        1      1      0      1
  UVRAG WILD-TYPE     53      9     24     21
D549V12, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(550) Variable = CLVS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS1 MUTATED        1      0      0      2
  CLVS1 WILD-TYPE     45     58     64     41
D550V1, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS1 MUTATED        2      0      1
  CLVS1 WILD-TYPE     49     83     76
D550V2, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS1 MUTATED        5      4      3      0
  CLVS1 WILD-TYPE    173    179     98     20
D550V3, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS1 MUTATED        4      3      1
  CLVS1 WILD-TYPE     83     77     99
D550V4, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS1 MUTATED        3      4      3
  CLVS1 WILD-TYPE     86    156    135
D550V5, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLVS1 MUTATED        4      3      3
  CLVS1 WILD-TYPE    178    130     69
D550V6, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS1 MUTATED        5      1      2      4
  CLVS1 WILD-TYPE    107     95     90    182
D550V7, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLVS1 MUTATED        3      1      0      0      4      1      3
  CLVS1 WILD-TYPE     57     49     49     40     59    124     96
D550V8, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS1 MUTATED        2      2      4      4
  CLVS1 WILD-TYPE    128     76     64    192
D550V9, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             4              64
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLVS1 MUTATED        1      2      0      1      2      0      3      0
  CLVS1 WILD-TYPE     39     60     28     79     67     48     40     28
                 vv
clus              CLUS_9
  CLVS1 MUTATED        3
  CLVS1 WILD-TYPE     71
D550V10, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS1 MUTATED        2      0      1      0
  CLVS1 WILD-TYPE     31     31     26     19
D550V11, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLVS1 MUTATED        0      0      0      3
  CLVS1 WILD-TYPE     54     10     24     19
D550V12, multiclass
        clus
vv       CLVS1 MUTATED CLVS1 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(551) Variable = TTF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        0      0      0      2
  TTF1 WILD-TYPE     46     58     64     41
D551V1, multiclass
[1] "Remove cluster labels:" "TTF1 MUTATED"          
clus
  TTF1 MUTATED TTF1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AY-4071 
"TTF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        0      0      2
  TTF1 WILD-TYPE     51     83     75
D551V2, multiclass
[1] "Remove cluster labels:" "TTF1 MUTATED"          
clus
  TTF1 MUTATED TTF1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-AY-4071 
"TTF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED       10      1      0      0
  TTF1 WILD-TYPE    168    182    101     20
D551V3, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        3      0      6
  TTF1 WILD-TYPE     84     80     94
D551V4, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        3      4      3
  TTF1 WILD-TYPE     86    156    135
D551V5, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            4            156
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        5      3      2
  TTF1 WILD-TYPE    177    130     70
D551V6, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        1      5      3      2
  TTF1 WILD-TYPE    111     91     89    184
D551V7, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTF1 MUTATED        1      2      5      0      2      0      1
  TTF1 WILD-TYPE     59     48     44     40     61    125     98
D551V8, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        4      3      0      4
  TTF1 WILD-TYPE    126     75     68    192
D551V9, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TTF1 MUTATED        1      3      2      0      4      0      1      0      0
  TTF1 WILD-TYPE     39     59     26     80     65     48     42     28     74
D551V10, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        2      0      0      1
  TTF1 WILD-TYPE     31     31     27     18
D551V11, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        3      0      0      0
  TTF1 WILD-TYPE     51     10     24     22
D551V12, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(552) Variable = FGFR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR1 MUTATED        2      0      0      1
  FGFR1 WILD-TYPE     44     58     64     42
D552V1, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR1 MUTATED        1      1      1
  FGFR1 WILD-TYPE     50     82     76
D552V2, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR1 MUTATED       12      4      2      1
  FGFR1 WILD-TYPE    166    179     99     19
D552V3, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR1 MUTATED        3      5      8
  FGFR1 WILD-TYPE     84     75     92
D552V4, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5              75
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR1 MUTATED        1      9      5
  FGFR1 WILD-TYPE     88    151    133
D552V5, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR1 MUTATED        3     10      2
  FGFR1 WILD-TYPE    179    123     70
D552V6, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR1 MUTATED        4      9      1      5
  FGFR1 WILD-TYPE    108     87     91    181
D552V7, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             9              87
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGFR1 MUTATED        2      3      5      3      2      2      2
  FGFR1 WILD-TYPE     58     47     44     37     61    123     97
D552V8, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR1 MUTATED        8      3      1      7
  FGFR1 WILD-TYPE    122     75     67    189
D552V9, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FGFR1 MUTATED        1      2      2      1      7      1      3      0
  FGFR1 WILD-TYPE     39     60     26     79     62     47     40     28
                 vv
clus              CLUS_9
  FGFR1 MUTATED        2
  FGFR1 WILD-TYPE     72
D552V10, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR1 MUTATED        1      1      0      1
  FGFR1 WILD-TYPE     32     30     27     18
D552V11, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR1 MUTATED        1      1      1      0
  FGFR1 WILD-TYPE     53      9     23     22
D552V12, multiclass
        clus
vv       FGFR1 MUTATED FGFR1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(553) Variable = OSMR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSMR MUTATED        0      1      2      3
  OSMR WILD-TYPE     46     57     62     40
D553V1, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSMR MUTATED        2      1      3
  OSMR WILD-TYPE     49     82     74
D553V2, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSMR MUTATED       14      5      1      2
  OSMR WILD-TYPE    164    178    100     18
D553V3, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1           14            164
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSMR MUTATED        6      1      9
  OSMR WILD-TYPE     81     79     91
D553V4, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSMR MUTATED        3      8      9
  OSMR WILD-TYPE     86    152    129
D553V5, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            3             86
  CLUS_2            8            152
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSMR MUTATED       10      7      3
  OSMR WILD-TYPE    172    126     69
D553V6, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1           10            172
  CLUS_2            7            126
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSMR MUTATED        3      6      6      7
  OSMR WILD-TYPE    109     90     86    179
D553V7, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            6             86
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSMR MUTATED        3      1      8      0      3      2      5
  OSMR WILD-TYPE     57     49     41     40     60    123     94
D553V8, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            8             41
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSMR MUTATED        8      6      1      6
  OSMR WILD-TYPE    122     72     67    190
D553V9, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            8            122
  CLUS_2            6             72
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  OSMR MUTATED        2      6      0      3      5      1      0      1      3
  OSMR WILD-TYPE     38     56     28     77     64     47     43     27     71
D553V10, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSMR MUTATED        1      2      0      2
  OSMR WILD-TYPE     32     29     27     17
D553V11, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSMR MUTATED        4      1      0      0
  OSMR WILD-TYPE     50      9     24     22
D553V12, multiclass
        clus
vv       OSMR MUTATED OSMR WILD-TYPE
  CLUS_1            4             50
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(554) Variable = LASS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LASS3 MUTATED        3      1      0      5
  LASS3 WILD-TYPE     43     57     64     38
D554V1, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LASS3 MUTATED        3      2      4
  LASS3 WILD-TYPE     48     81     73
D554V2, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LASS3 MUTATED       11      4      2      0
  LASS3 WILD-TYPE    167    179     99     20
D554V3, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LASS3 MUTATED        2      3      4
  LASS3 WILD-TYPE     85     77     96
D554V4, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LASS3 MUTATED        4      8      3
  LASS3 WILD-TYPE     85    152    135
D554V5, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             8             152
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LASS3 MUTATED        3      8      4
  LASS3 WILD-TYPE    179    125     68
D554V6, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LASS3 MUTATED        4      3      1      9
  LASS3 WILD-TYPE    108     93     91    177
D554V7, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LASS3 MUTATED        3      2      0      1      2      1      8
  LASS3 WILD-TYPE     57     48     49     39     61    124     91
D554V8, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LASS3 MUTATED        6      1      1      8
  LASS3 WILD-TYPE    124     77     67    188
D554V9, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LASS3 MUTATED        3      1      2      1      4      2      0      1
  LASS3 WILD-TYPE     37     61     26     79     65     46     43     27
                 vv
clus              CLUS_9
  LASS3 MUTATED        2
  LASS3 WILD-TYPE     72
D554V10, multiclass
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LASS3 MUTATED        0      1      0      1
  LASS3 WILD-TYPE     33     30     27     18
D554V11, multiclass
[1] "Remove cluster labels:" "LASS3 MUTATED"         
clus
  LASS3 MUTATED LASS3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6460      TCGA-F4-6569 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LASS3 MUTATED        0      1      0      1
  LASS3 WILD-TYPE     54      9     24     21
D554V12, multiclass
[1] "Remove cluster labels:" "LASS3 MUTATED"         
clus
  LASS3 MUTATED LASS3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6460      TCGA-F4-6569 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 

Clustering(555) Variable = HGS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGS MUTATED        0      0      0      0
  HGS WILD-TYPE     46     58     64     43
D555V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HGS MUTATED        0      0      0
  HGS WILD-TYPE     51     83     77
D555V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGS MUTATED        8      2      0      0
  HGS WILD-TYPE    170    181    101     20
D555V3, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           8           170
  CLUS_2           2           181
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HGS MUTATED        1      1      8
  HGS WILD-TYPE     86     79     92
D555V4, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           1            86
  CLUS_2           1            79
  CLUS_3           8            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HGS MUTATED        1      5      3
  HGS WILD-TYPE     88    155    135
D555V5, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           1            88
  CLUS_2           5           155
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HGS MUTATED        6      3      0
  HGS WILD-TYPE    176    130     72
D555V6, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           6           176
  CLUS_2           3           130
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGS MUTATED        1      5      4      0
  HGS WILD-TYPE    111     91     88    186
D555V7, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           1           111
  CLUS_2           5            91
  CLUS_3           4            88
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HGS MUTATED        1      2      7      0      0      0      0
  HGS WILD-TYPE     59     48     42     40     63    125     99
D555V8, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           7            42
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGS MUTATED        9      1      0      0
  HGS WILD-TYPE    121     77     68    196
D555V9, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           9           121
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HGS MUTATED        2      2      0      2      4      0      0      0      0
  HGS WILD-TYPE     38     60     28     78     65     48     43     28     74
D555V10, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           2            78
  CLUS_5           4            65
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGS MUTATED        0      0      0      3
  HGS WILD-TYPE     33     31     27     16
D555V11, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGS MUTATED        2      0      1      0
  HGS WILD-TYPE     52     10     23     22
D555V12, multiclass
        clus
vv       HGS MUTATED HGS WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(556) Variable = PLEKHA6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        5      1      0      1
  PLEKHA6 WILD-TYPE     41     57     64     42
D556V1, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED        6      1      0
  PLEKHA6 WILD-TYPE     45     82     77
D556V2, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED       18      0      1      0
  PLEKHA6 WILD-TYPE    160    183    100     20
D556V3, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1              18               160
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED        4      0      9
  PLEKHA6 WILD-TYPE     83     80     91
D556V4, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED        2      5      9
  PLEKHA6 WILD-TYPE     87    155    129
D556V5, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               5               155
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED       10      4      2
  PLEKHA6 WILD-TYPE    172    129     70
D556V6, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1              10               172
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        0      9      4      7
  PLEKHA6 WILD-TYPE    112     87     88    179
D556V7, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               9                87
  CLUS_3               4                88
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEKHA6 MUTATED        0      0     11      1      0      1      7
  PLEKHA6 WILD-TYPE     60     50     38     39     63    124     92
D556V8, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3              11                38
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               7                92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        9      2      0      8
  PLEKHA6 WILD-TYPE    121     76     68    188
D556V9, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLEKHA6 MUTATED        2      5      0      0     10      0      0      2
  PLEKHA6 WILD-TYPE     38     57     28     80     59     48     43     26
                   vv
clus                CLUS_9
  PLEKHA6 MUTATED        0
  PLEKHA6 WILD-TYPE     74
D556V10, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5              10                59
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               2                26
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        1      0      0      3
  PLEKHA6 WILD-TYPE     32     31     27     16
D556V11, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        1      0      3      0
  PLEKHA6 WILD-TYPE     53     10     21     22
D556V12, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(557) Variable = MAP7D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        0      0      0      1
  MAP7D1 WILD-TYPE     46     58     64     42
D557V1, multiclass
[1] "Remove cluster labels:" "MAP7D1 MUTATED"        
clus
  MAP7D1 MUTATED MAP7D1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED        1      0      0
  MAP7D1 WILD-TYPE     50     83     77
D557V2, multiclass
[1] "Remove cluster labels:" "MAP7D1 MUTATED"        
clus
  MAP7D1 MUTATED MAP7D1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MAP7D1 WILD-TYPE" "MAP7D1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED       12      1      2      0
  MAP7D1 WILD-TYPE    166    182     99     20
D557V3, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED        6      0      8
  MAP7D1 WILD-TYPE     81     80     92
D557V4, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED        0      5      9
  MAP7D1 WILD-TYPE     89    155    129
D557V5, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED       12      1      1
  MAP7D1 WILD-TYPE    170    132     71
D557V6, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        1      4      9      1
  MAP7D1 WILD-TYPE    111     92     83    185
D557V7, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              9               83
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP7D1 MUTATED        1      1     10      0      2      0      1
  MAP7D1 WILD-TYPE     59     49     39     40     61    125     98
D557V8, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3             10               39
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        9      3      1      1
  MAP7D1 WILD-TYPE    121     75     67    195
D557V9, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP7D1 MUTATED        1      7      0      0      3      0      3      0
  MAP7D1 WILD-TYPE     39     55     28     80     66     48     40     28
                  vv
clus               CLUS_9
  MAP7D1 MUTATED        0
  MAP7D1 WILD-TYPE     74
D557V10, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              7               55
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        2      1      0      3
  MAP7D1 WILD-TYPE     31     30     27     16
D557V11, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        3      1      1      1
  MAP7D1 WILD-TYPE     51      9     23     21
D557V12, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(558) Variable = MPO MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPO MUTATED        3      0      0      2
  MPO WILD-TYPE     43     58     64     41
D558V1, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MPO MUTATED        2      1      2
  MPO WILD-TYPE     49     82     75
D558V2, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPO MUTATED       10      4      1      0
  MPO WILD-TYPE    168    179    100     20
D558V3, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1          10           168
  CLUS_2           4           179
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MPO MUTATED        6      1      3
  MPO WILD-TYPE     81     79     97
D558V4, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           6            81
  CLUS_2           1            79
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MPO MUTATED        2      3      7
  MPO WILD-TYPE     87    157    131
D558V5, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           2            87
  CLUS_2           3           157
  CLUS_3           7           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MPO MUTATED        7      4      1
  MPO WILD-TYPE    175    129     71
D558V6, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           7           175
  CLUS_2           4           129
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPO MUTATED        3      4      4      5
  MPO WILD-TYPE    109     92     88    181
D558V7, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           3           109
  CLUS_2           4            92
  CLUS_3           4            88
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MPO MUTATED        3      2      1      1      5      1      3
  MPO WILD-TYPE     57     48     48     39     58    124     96
D558V8, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           3            57
  CLUS_2           2            48
  CLUS_3           1            48
  CLUS_4           1            39
  CLUS_5           5            58
  CLUS_6           1           124
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPO MUTATED        2      4      2      8
  MPO WILD-TYPE    128     74     66    188
D558V9, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           2           128
  CLUS_2           4            74
  CLUS_3           2            66
  CLUS_4           8           188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MPO MUTATED        0      3      1      5      3      0      2      1      1
  MPO WILD-TYPE     40     59     27     75     66     48     41     27     73
D558V10, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           0            40
  CLUS_2           3            59
  CLUS_3           1            27
  CLUS_4           5            75
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           2            41
  CLUS_8           1            27
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPO MUTATED        0      3      1      0
  MPO WILD-TYPE     33     28     26     19
D558V11, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           0            33
  CLUS_2           3            28
  CLUS_3           1            26
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPO MUTATED        3      0      1      0
  MPO WILD-TYPE     51     10     23     22
D558V12, multiclass
        clus
vv       MPO MUTATED MPO WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(559) Variable = WBP11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        1      0      0      0
  WBP11 WILD-TYPE     45     58     64     43
D559V1, multiclass
[1] "Remove cluster labels:" "WBP11 MUTATED"         
clus
  WBP11 MUTATED WBP11 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WBP11 MUTATED        0      1      0
  WBP11 WILD-TYPE     51     82     77
D559V2, multiclass
[1] "Remove cluster labels:" "WBP11 MUTATED"         
clus
  WBP11 MUTATED WBP11 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        7      0      1      0
  WBP11 WILD-TYPE    171    183    100     20
D559V3, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WBP11 MUTATED        1      0      6
  WBP11 WILD-TYPE     86     80     94
D559V4, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WBP11 MUTATED        1      3      2
  WBP11 WILD-TYPE     88    157    136
D559V5, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WBP11 MUTATED        2      2      2
  WBP11 WILD-TYPE    180    131     70
D559V6, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        1      4      2      1
  WBP11 WILD-TYPE    111     92     90    185
D559V7, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WBP11 MUTATED        1      1      3      2      0      1      0
  WBP11 WILD-TYPE     59     49     46     38     63    124     99
D559V8, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        7      0      0      1
  WBP11 WILD-TYPE    123     78     68    195
D559V9, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WBP11 MUTATED        4      0      0      1      2      1      0      0
  WBP11 WILD-TYPE     36     62     28     79     67     47     43     28
                 vv
clus              CLUS_9
  WBP11 MUTATED        0
  WBP11 WILD-TYPE     74
D559V10, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        0      0      0      1
  WBP11 WILD-TYPE     33     31     27     18
D559V11, multiclass
[1] "Remove cluster labels:" "WBP11 MUTATED"         
clus
  WBP11 MUTATED WBP11 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-G5-6641 
"WBP11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        0      0      1      0
  WBP11 WILD-TYPE     54     10     23     22
D559V12, multiclass
[1] "Remove cluster labels:" "WBP11 MUTATED"         
clus
  WBP11 MUTATED WBP11 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" "WBP11 WILD-TYPE" 
     TCGA-G5-6641 
"WBP11 WILD-TYPE" 

Clustering(560) Variable = RASA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA2 MUTATED        0      1      0      2
  RASA2 WILD-TYPE     46     57     64     41
D560V1, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA2 MUTATED        0      2      1
  RASA2 WILD-TYPE     51     81     76
D560V2, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA2 MUTATED       12      3      2      0
  RASA2 WILD-TYPE    166    180     99     20
D560V3, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA2 MUTATED        7      2      5
  RASA2 WILD-TYPE     80     78     95
D560V4, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA2 MUTATED        2      8      6
  RASA2 WILD-TYPE     87    152    132
D560V5, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA2 MUTATED        3      9      4
  RASA2 WILD-TYPE    179    124     68
D560V6, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA2 MUTATED        2      7      4      4
  RASA2 WILD-TYPE    110     89     88    182
D560V7, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASA2 MUTATED        1      5      4      2      2      1      2
  RASA2 WILD-TYPE     59     45     45     38     61    124     97
D560V8, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             5              45
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA2 MUTATED        7      5      0      5
  RASA2 WILD-TYPE    123     73     68    191
D560V9, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RASA2 MUTATED        6      3      1      2      2      0      1      0
  RASA2 WILD-TYPE     34     59     27     78     67     48     42     28
                 vv
clus              CLUS_9
  RASA2 MUTATED        2
  RASA2 WILD-TYPE     72
D560V10, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             6              34
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA2 MUTATED        2      0      0      2
  RASA2 WILD-TYPE     31     31     27     17
D560V11, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA2 MUTATED        3      0      1      0
  RASA2 WILD-TYPE     51     10     23     22
D560V12, multiclass
        clus
vv       RASA2 MUTATED RASA2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(561) Variable = PLCH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCH2 MUTATED        0      0      0      1
  PLCH2 WILD-TYPE     46     58     64     42
D561V1, multiclass
[1] "Remove cluster labels:" "PLCH2 MUTATED"         
clus
  PLCH2 MUTATED PLCH2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCH2 MUTATED        1      0      0
  PLCH2 WILD-TYPE     50     83     77
D561V2, multiclass
[1] "Remove cluster labels:" "PLCH2 MUTATED"         
clus
  PLCH2 MUTATED PLCH2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PLCH2 WILD-TYPE" "PLCH2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCH2 MUTATED        8      7      2      2
  PLCH2 WILD-TYPE    170    176     99     18
D561V3, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             7             176
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCH2 MUTATED        4      5      9
  PLCH2 WILD-TYPE     83     75     91
D561V4, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             5              75
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCH2 MUTATED        2      5      9
  PLCH2 WILD-TYPE     87    155    129
D561V5, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCH2 MUTATED       12      3      1
  PLCH2 WILD-TYPE    170    130     71
D561V6, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1            12             170
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCH2 MUTATED        5      7      6      1
  PLCH2 WILD-TYPE    107     89     86    185
D561V7, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLCH2 MUTATED        3      3      5      3      4      0      1
  PLCH2 WILD-TYPE     57     47     44     37     59    125     98
D561V8, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCH2 MUTATED       10      6      2      1
  PLCH2 WILD-TYPE    120     72     66    195
D561V9, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             6              72
  CLUS_3             2              66
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLCH2 MUTATED        3      5      1      4      2      0      3      1
  PLCH2 WILD-TYPE     37     57     27     76     67     48     40     27
                 vv
clus              CLUS_9
  PLCH2 MUTATED        0
  PLCH2 WILD-TYPE     74
D561V10, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCH2 MUTATED        3      3      2      2
  PLCH2 WILD-TYPE     30     28     25     17
D561V11, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCH2 MUTATED        5      1      3      1
  PLCH2 WILD-TYPE     49      9     21     21
D561V12, multiclass
        clus
vv       PLCH2 MUTATED PLCH2 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(562) Variable = C1ORF59 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF59 MUTATED        0      0      0      1
  C1ORF59 WILD-TYPE     46     58     64     42
D562V1, multiclass
[1] "Remove cluster labels:" "C1ORF59 MUTATED"       
clus
  C1ORF59 MUTATED C1ORF59 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF59 MUTATED        1      0      0
  C1ORF59 WILD-TYPE     50     83     77
D562V2, multiclass
[1] "Remove cluster labels:" "C1ORF59 MUTATED"       
clus
  C1ORF59 MUTATED C1ORF59 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C1ORF59 WILD-TYPE" "C1ORF59 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF59 MUTATED        4      3      3      0
  C1ORF59 WILD-TYPE    174    180     98     20
D562V3, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               3               180
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF59 MUTATED        5      2      2
  C1ORF59 WILD-TYPE     82     78     98
D562V4, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF59 MUTATED        1      2      5
  C1ORF59 WILD-TYPE     88    158    133
D562V5, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF59 MUTATED        5      2      1
  C1ORF59 WILD-TYPE    177    131     71
D562V6, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF59 MUTATED        3      1      4      2
  C1ORF59 WILD-TYPE    109     95     88    184
D562V7, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               1                95
  CLUS_3               4                88
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF59 MUTATED        2      1      2      1      2      1      1
  C1ORF59 WILD-TYPE     58     49     47     39     61    124     98
D562V8, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF59 MUTATED        4      3      0      2
  C1ORF59 WILD-TYPE    126     75     68    194
D562V9, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1ORF59 MUTATED        0      3      1      4      0      0      0      0
  C1ORF59 WILD-TYPE     40     59     27     76     69     48     43     28
                   vv
clus                CLUS_9
  C1ORF59 MUTATED        1
  C1ORF59 WILD-TYPE     73
D562V10, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               4                76
  CLUS_5               0                69
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF59 MUTATED        2      2      0      0
  C1ORF59 WILD-TYPE     31     29     27     19
D562V11, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF59 MUTATED        2      1      1      0
  C1ORF59 WILD-TYPE     52      9     23     22
D562V12, multiclass
        clus
vv       C1ORF59 MUTATED C1ORF59 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(563) Variable = MEPE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPE MUTATED        0      1      0      4
  MEPE WILD-TYPE     46     57     64     39
D563V1, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEPE MUTATED        2      1      2
  MEPE WILD-TYPE     49     82     75
D563V2, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPE MUTATED       13      5      0      0
  MEPE WILD-TYPE    165    178    101     20
D563V3, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1           13            165
  CLUS_2            5            178
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEPE MUTATED        7      3      2
  MEPE WILD-TYPE     80     77     98
D563V4, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            7             80
  CLUS_2            3             77
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEPE MUTATED        4      5      9
  MEPE WILD-TYPE     85    155    129
D563V5, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            4             85
  CLUS_2            5            155
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEPE MUTATED       10      4      4
  MEPE WILD-TYPE    172    129     68
D563V6, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1           10            172
  CLUS_2            4            129
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPE MUTATED        3      3      7      5
  MEPE WILD-TYPE    109     93     85    181
D563V7, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            7             85
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEPE MUTATED        1      1      7      2      3      2      2
  MEPE WILD-TYPE     59     49     42     38     60    123     97
D563V8, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPE MUTATED        4      8      1      4
  MEPE WILD-TYPE    126     70     67    192
D563V9, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            4            126
  CLUS_2            8             70
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MEPE MUTATED        3      7      0      0      3      1      0      1      2
  MEPE WILD-TYPE     37     55     28     80     66     47     43     27     72
D563V10, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            3             37
  CLUS_2            7             55
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPE MUTATED        2      1      0      2
  MEPE WILD-TYPE     31     30     27     17
D563V11, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPE MUTATED        3      0      1      1
  MEPE WILD-TYPE     51     10     23     21
D563V12, multiclass
        clus
vv       MEPE MUTATED MEPE WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(564) Variable = RNASEL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        1      1      0      2
  RNASEL WILD-TYPE     45     57     64     41
D564V1, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASEL MUTATED        2      1      1
  RNASEL WILD-TYPE     49     82     76
D564V2, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED       10      2      1      1
  RNASEL WILD-TYPE    168    181    100     19
D564V3, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1             10              168
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASEL MUTATED        5      2      4
  RNASEL WILD-TYPE     82     78     96
D564V4, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASEL MUTATED        1      2      9
  RNASEL WILD-TYPE     88    158    129
D564V5, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASEL MUTATED        9      2      1
  RNASEL WILD-TYPE    173    131     71
D564V6, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              9              173
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        2      3      6      3
  RNASEL WILD-TYPE    110     93     86    183
D564V7, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              6               86
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNASEL MUTATED        1      1      4      2      2      1      3
  RNASEL WILD-TYPE     59     49     45     38     61    124     96
D564V8, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        4      4      1      4
  RNASEL WILD-TYPE    126     74     67    192
D564V9, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              4              126
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNASEL MUTATED        0      6      2      2      0      0      2      0
  RNASEL WILD-TYPE     40     56     26     78     69     48     41     28
                  vv
clus               CLUS_9
  RNASEL MUTATED        1
  RNASEL WILD-TYPE     73
D564V10, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              0               40
  CLUS_2              6               56
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        1      2      1      3
  RNASEL WILD-TYPE     32     29     26     16
D564V11, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        4      1      2      0
  RNASEL WILD-TYPE     50      9     22     22
D564V12, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(565) Variable = ESCO2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        1      1      0      2
  ESCO2 WILD-TYPE     45     57     64     41
D565V1, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO2 MUTATED        2      2      0
  ESCO2 WILD-TYPE     49     81     77
D565V2, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        9      3      1      1
  ESCO2 WILD-TYPE    169    180    100     19
D565V3, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO2 MUTATED        6      1      3
  ESCO2 WILD-TYPE     81     79     97
D565V4, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO2 MUTATED        1      3      9
  ESCO2 WILD-TYPE     88    157    129
D565V5, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO2 MUTATED        8      3      2
  ESCO2 WILD-TYPE    174    130     70
D565V6, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        2      4      4      4
  ESCO2 WILD-TYPE    110     92     88    182
D565V7, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESCO2 MUTATED        1      2      4      0      3      1      3
  ESCO2 WILD-TYPE     59     48     45     40     60    124     96
D565V8, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        6      3      0      4
  ESCO2 WILD-TYPE    124     75     68    192
D565V9, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ESCO2 MUTATED        2      3      2      0      3      1      0      0
  ESCO2 WILD-TYPE     38     59     26     80     66     47     43     28
                 vv
clus              CLUS_9
  ESCO2 MUTATED        2
  ESCO2 WILD-TYPE     72
D565V10, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        1      1      1      1
  ESCO2 WILD-TYPE     32     30     26     18
D565V11, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO2 MUTATED        1      1      1      1
  ESCO2 WILD-TYPE     53      9     23     21
D565V12, multiclass
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(566) Variable = CCDC88A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        5      0      2      5
  CCDC88A WILD-TYPE     41     58     62     38
D566V1, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               5                41
  CLUS_2               0                58
  CLUS_3               2                62
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED        6      2      4
  CCDC88A WILD-TYPE     45     81     73
D566V2, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               6                45
  CLUS_2               2                81
  CLUS_3               4                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED       24      6      4      2
  CCDC88A WILD-TYPE    154    177     97     18
D566V3, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              24               154
  CLUS_2               6               177
  CLUS_3               4                97
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED       11      2     11
  CCDC88A WILD-TYPE     76     78     89
D566V4, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              11                76
  CLUS_2               2                78
  CLUS_3              11                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED        2     14     10
  CCDC88A WILD-TYPE     87    146    128
D566V5, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                87
  CLUS_2              14               146
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED       11     11      4
  CCDC88A WILD-TYPE    171    122     68
D566V6, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              11               171
  CLUS_2              11               122
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        3      8     12     12
  CCDC88A WILD-TYPE    109     88     80    174
D566V7, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3               109
  CLUS_2               8                88
  CLUS_3              12                80
  CLUS_4              12               174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC88A MUTATED        3      1     11      1      6      3     10
  CCDC88A WILD-TYPE     57     49     38     39     57    122     89
D566V8, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3              11                38
  CLUS_4               1                39
  CLUS_5               6                57
  CLUS_6               3               122
  CLUS_7              10                89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        9      7      1     19
  CCDC88A WILD-TYPE    121     71     67    177
D566V9, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               9               121
  CLUS_2               7                71
  CLUS_3               1                67
  CLUS_4              19               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC88A MUTATED        1      5      4      8     11      3      2      0
  CCDC88A WILD-TYPE     39     57     24     72     58     45     41     28
                   vv
clus                CLUS_9
  CCDC88A MUTATED        2
  CCDC88A WILD-TYPE     72
D566V10, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               5                57
  CLUS_3               4                24
  CLUS_4               8                72
  CLUS_5              11                58
  CLUS_6               3                45
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        3      3      1      5
  CCDC88A WILD-TYPE     30     28     26     14
D566V11, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3                30
  CLUS_2               3                28
  CLUS_3               1                26
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        5      1      5      1
  CCDC88A WILD-TYPE     49      9     19     21
D566V12, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               5                49
  CLUS_2               1                 9
  CLUS_3               5                19
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(567) Variable = ATP8B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        4      1      1      3
  ATP8B1 WILD-TYPE     42     57     63     40
D567V1, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED        3      4      2
  ATP8B1 WILD-TYPE     48     79     75
D567V2, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              4               79
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED       20      5      3      0
  ATP8B1 WILD-TYPE    158    178     98     20
D567V3, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1             20              158
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED       10      2      7
  ATP8B1 WILD-TYPE     77     78     93
D567V4, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1             10               77
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED        1      6     17
  ATP8B1 WILD-TYPE     88    154    121
D567V5, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3             17              121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED       16      7      1
  ATP8B1 WILD-TYPE    166    126     71
D567V6, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1             16              166
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        2      4     12     10
  ATP8B1 WILD-TYPE    110     92     80    176
D567V7, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3             12               80
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP8B1 MUTATED        3      3      7      1      5      3      6
  ATP8B1 WILD-TYPE     57     47     42     39     58    122     93
D567V8, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              5               58
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        9      6      2     10
  ATP8B1 WILD-TYPE    121     72     66    186
D567V9, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              6               72
  CLUS_3              2               66
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP8B1 MUTATED        5      7      2      5      3      0      2      2
  ATP8B1 WILD-TYPE     35     55     26     75     66     48     41     26
                  vv
clus               CLUS_9
  ATP8B1 MUTATED        1
  ATP8B1 WILD-TYPE     73
D567V10, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              5               35
  CLUS_2              7               55
  CLUS_3              2               26
  CLUS_4              5               75
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        2      2      1      4
  ATP8B1 WILD-TYPE     31     29     26     15
D567V11, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        6      1      2      0
  ATP8B1 WILD-TYPE     48      9     22     22
D567V12, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(568) Variable = LAMC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMC1 MUTATED        3      1      0      4
  LAMC1 WILD-TYPE     43     57     64     39
D568V1, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMC1 MUTATED        4      2      2
  LAMC1 WILD-TYPE     47     81     75
D568V2, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMC1 MUTATED       13      6      4      0
  LAMC1 WILD-TYPE    165    177     97     20
D568V3, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             6             177
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMC1 MUTATED        8      3      4
  LAMC1 WILD-TYPE     79     77     96
D568V4, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMC1 MUTATED        4     12      5
  LAMC1 WILD-TYPE     85    148    133
D568V5, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            12             148
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMC1 MUTATED        6     11      4
  LAMC1 WILD-TYPE    176    122     68
D568V6, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2            11             122
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMC1 MUTATED        5      4      5      9
  LAMC1 WILD-TYPE    107     92     87    177
D568V7, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAMC1 MUTATED        3      4      3      2      3      1      7
  LAMC1 WILD-TYPE     57     46     46     38     60    124     92
D568V8, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMC1 MUTATED        8      3      1      9
  LAMC1 WILD-TYPE    122     75     67    187
D568V9, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LAMC1 MUTATED        5      3      2      2      5      1      1      0
  LAMC1 WILD-TYPE     35     59     26     78     64     47     42     28
                 vv
clus              CLUS_9
  LAMC1 MUTATED        2
  LAMC1 WILD-TYPE     72
D568V10, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMC1 MUTATED        2      1      0      1
  LAMC1 WILD-TYPE     31     30     27     18
D568V11, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMC1 MUTATED        2      0      0      2
  LAMC1 WILD-TYPE     52     10     24     20
D568V12, multiclass
        clus
vv       LAMC1 MUTATED LAMC1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(569) Variable = SLFN12L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12L MUTATED        2      0      0      1
  SLFN12L WILD-TYPE     44     58     64     42
D569V1, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLFN12L MUTATED        2      0      1
  SLFN12L WILD-TYPE     49     83     76
D569V2, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12L MUTATED        4      1      1      1
  SLFN12L WILD-TYPE    174    182    100     19
D569V3, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLFN12L MUTATED        4      1      0
  SLFN12L WILD-TYPE     83     79    100
D569V4, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               4                83
  CLUS_2               1                79
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLFN12L MUTATED        0      2      5
  SLFN12L WILD-TYPE     89    158    133
D569V5, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLFN12L MUTATED        3      3      1
  SLFN12L WILD-TYPE    179    130     71
D569V6, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12L MUTATED        1      2      3      2
  SLFN12L WILD-TYPE    111     94     89    184
D569V7, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLFN12L MUTATED        1      1      1      1      1      0      3
  SLFN12L WILD-TYPE     59     49     48     39     62    125     96
D569V8, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12L MUTATED        2      2      0      4
  SLFN12L WILD-TYPE    128     76     68    192
D569V9, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLFN12L MUTATED        0      2      0      1      3      1      0      0
  SLFN12L WILD-TYPE     40     60     28     79     66     47     43     28
                   vv
clus                CLUS_9
  SLFN12L MUTATED        1
  SLFN12L WILD-TYPE     73
D569V10, multiclass
        clus
vv       SLFN12L MUTATED SLFN12L WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12L MUTATED        0      0      0      1
  SLFN12L WILD-TYPE     33     31     27     18
D569V11, multiclass
[1] "Remove cluster labels:" "SLFN12L MUTATED"       
clus
  SLFN12L MUTATED SLFN12L WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-G5-6641 
"SLFN12L WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12L MUTATED        1      0      0      0
  SLFN12L WILD-TYPE     53     10     24     22
D569V12, multiclass
[1] "Remove cluster labels:" "SLFN12L MUTATED"       
clus
  SLFN12L MUTATED SLFN12L WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" "SLFN12L WILD-TYPE" 
       TCGA-G5-6641 
"SLFN12L WILD-TYPE" 

Clustering(570) Variable = PLXNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        1      0      0      1
  PLXNA3 WILD-TYPE     45     58     64     42
D570V1, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AY-4071 
"PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        1      1      0
  PLXNA3 WILD-TYPE     50     82     77
D570V2, multiclass
[1] "Remove cluster labels:" "PLXNA3 MUTATED"        
clus
  PLXNA3 MUTATED PLXNA3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" "PLXNA3 WILD-TYPE" 
      TCGA-AY-4071 
"PLXNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED       15      2      2      0
  PLXNA3 WILD-TYPE    163    181     99     20
D570V3, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        3      2     12
  PLXNA3 WILD-TYPE     84     78     88
D570V4, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        2      7      8
  PLXNA3 WILD-TYPE     87    153    130
D570V5, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA3 MUTATED        9      4      4
  PLXNA3 WILD-TYPE    173    129     68
D570V6, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              4              129
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        3     10      4      2
  PLXNA3 WILD-TYPE    109     86     88    184
D570V7, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3              109
  CLUS_2             10               86
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLXNA3 MUTATED        1      1     11      1      2      0      3
  PLXNA3 WILD-TYPE     59     49     38     39     61    125     96
D570V8, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3             11               38
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED       14      1      2      2
  PLXNA3 WILD-TYPE    116     77     66    194
D570V9, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLXNA3 MUTATED        4      4      0      1      6      1      2      0
  PLXNA3 WILD-TYPE     36     58     28     79     63     47     41     28
                  vv
clus               CLUS_9
  PLXNA3 MUTATED        1
  PLXNA3 WILD-TYPE     73
D570V10, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        0      1      0      4
  PLXNA3 WILD-TYPE     33     30     27     15
D570V11, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA3 MUTATED        3      0      1      1
  PLXNA3 WILD-TYPE     51     10     23     21
D570V12, multiclass
        clus
vv       PLXNA3 MUTATED PLXNA3 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(571) Variable = ITGAV MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        1      2      0      1
  ITGAV WILD-TYPE     45     56     64     42
D571V1, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        1      2      1
  ITGAV WILD-TYPE     50     81     76
D571V2, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED       12      1      4      0
  ITGAV WILD-TYPE    166    182     97     20
D571V3, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        6      1      6
  ITGAV WILD-TYPE     81     79     94
D571V4, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        1      5      8
  ITGAV WILD-TYPE     88    155    130
D571V5, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        9      4      1
  ITGAV WILD-TYPE    173    129     71
D571V6, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             9             173
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        1      7      6      3
  ITGAV WILD-TYPE    111     89     86    183
D571V7, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGAV MUTATED        2      3      7      0      2      2      1
  ITGAV WILD-TYPE     58     47     42     40     61    123     98
D571V8, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        8      3      1      5
  ITGAV WILD-TYPE    122     75     67    191
D571V9, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITGAV MUTATED        3      5      0      2      4      0      2      0
  ITGAV WILD-TYPE     37     57     28     78     65     48     41     28
                 vv
clus              CLUS_9
  ITGAV MUTATED        1
  ITGAV WILD-TYPE     73
D571V10, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        1      0      1      2
  ITGAV WILD-TYPE     32     31     26     17
D571V11, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        3      0      1      0
  ITGAV WILD-TYPE     51     10     23     22
D571V12, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(572) Variable = TAF12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF12 MUTATED        0      0      0      0
  TAF12 WILD-TYPE     46     58     64     43
D572V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF12 MUTATED        0      0      0
  TAF12 WILD-TYPE     51     83     77
D572V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF12 MUTATED        2      0      2      0
  TAF12 WILD-TYPE    176    183     99     20
D572V3, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF12 MUTATED        2      1      1
  TAF12 WILD-TYPE     85     79     99
D572V4, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF12 MUTATED        0      0      3
  TAF12 WILD-TYPE     89    160    135
D572V5, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             0             160
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF12 MUTATED        3      0      0
  TAF12 WILD-TYPE    179    133     72
D572V6, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF12 MUTATED        0      2      2      0
  TAF12 WILD-TYPE    112     94     90    186
D572V7, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAF12 MUTATED        0      1      0      1      2      0      0
  TAF12 WILD-TYPE     60     49     49     39     61    125     99
D572V8, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF12 MUTATED        4      0      0      0
  TAF12 WILD-TYPE    126     78     68    196
D572V9, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TAF12 MUTATED        2      0      0      1      0      1      0      0
  TAF12 WILD-TYPE     38     62     28     79     69     47     43     28
                 vv
clus              CLUS_9
  TAF12 MUTATED        0
  TAF12 WILD-TYPE     74
D572V10, multiclass
        clus
vv       TAF12 MUTATED TAF12 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF12 MUTATED        0      0      1      0
  TAF12 WILD-TYPE     33     31     26     19
D572V11, multiclass
[1] "Remove cluster labels:" "TAF12 MUTATED"         
clus
  TAF12 MUTATED TAF12 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-G5-6641 
"TAF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF12 MUTATED        0      0      1      0
  TAF12 WILD-TYPE     54     10     23     22
D572V12, multiclass
[1] "Remove cluster labels:" "TAF12 MUTATED"         
clus
  TAF12 MUTATED TAF12 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" "TAF12 WILD-TYPE" 
     TCGA-G5-6641 
"TAF12 WILD-TYPE" 

Clustering(573) Variable = ZNF473 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF473 MUTATED        3      0      1      2
  ZNF473 WILD-TYPE     43     58     63     41
D573V1, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF473 MUTATED        3      2      1
  ZNF473 WILD-TYPE     48     81     76
D573V2, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF473 MUTATED       10      5      1      0
  ZNF473 WILD-TYPE    168    178    100     20
D573V3, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF473 MUTATED        4      1      5
  ZNF473 WILD-TYPE     83     79     95
D573V4, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF473 MUTATED        1      5      7
  ZNF473 WILD-TYPE     88    155    131
D573V5, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF473 MUTATED        7      4      2
  ZNF473 WILD-TYPE    175    129     70
D573V6, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF473 MUTATED        3      3      4      6
  ZNF473 WILD-TYPE    109     93     88    180
D573V7, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF473 MUTATED        4      2      2      1      2      2      3
  ZNF473 WILD-TYPE     56     48     47     39     61    123     96
D573V8, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF473 MUTATED        5      3      2      5
  ZNF473 WILD-TYPE    125     75     66    191
D573V9, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF473 MUTATED        4      2      1      2      3      0      1      1
  ZNF473 WILD-TYPE     36     60     27     78     66     48     42     27
                  vv
clus               CLUS_9
  ZNF473 MUTATED        1
  ZNF473 WILD-TYPE     73
D573V10, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF473 MUTATED        3      0      0      1
  ZNF473 WILD-TYPE     30     31     27     18
D573V11, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF473 MUTATED        4      0      0      0
  ZNF473 WILD-TYPE     50     10     24     22
D573V12, multiclass
        clus
vv       ZNF473 MUTATED ZNF473 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(574) Variable = ENPP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP3 MUTATED        0      0      0      3
  ENPP3 WILD-TYPE     46     58     64     40
D574V1, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP3 MUTATED        2      0      1
  ENPP3 WILD-TYPE     49     83     76
D574V2, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP3 MUTATED       10      0      1      0
  ENPP3 WILD-TYPE    168    183    100     20
D574V3, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP3 MUTATED        5      0      3
  ENPP3 WILD-TYPE     82     80     97
D574V4, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP3 MUTATED        1      4      5
  ENPP3 WILD-TYPE     88    156    133
D574V5, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP3 MUTATED        6      2      2
  ENPP3 WILD-TYPE    176    131     70
D574V6, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP3 MUTATED        1      3      4      3
  ENPP3 WILD-TYPE    111     93     88    183
D574V7, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENPP3 MUTATED        1      0      5      1      2      0      2
  ENPP3 WILD-TYPE     59     50     44     39     61    125     97
D574V8, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP3 MUTATED        4      3      0      3
  ENPP3 WILD-TYPE    126     75     68    193
D574V9, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ENPP3 MUTATED        2      2      0      1      5      0      0      0
  ENPP3 WILD-TYPE     38     60     28     79     64     48     43     28
                 vv
clus              CLUS_9
  ENPP3 MUTATED        0
  ENPP3 WILD-TYPE     74
D574V10, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP3 MUTATED        1      0      0      2
  ENPP3 WILD-TYPE     32     31     27     17
D574V11, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP3 MUTATED        1      0      2      0
  ENPP3 WILD-TYPE     53     10     22     22
D574V12, multiclass
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(575) Variable = OR4N4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N4 MUTATED        1      0      0      4
  OR4N4 WILD-TYPE     45     58     64     39
D575V1, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N4 MUTATED        2      1      2
  OR4N4 WILD-TYPE     49     82     75
D575V2, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N4 MUTATED       11      5      2      0
  OR4N4 WILD-TYPE    167    178     99     20
D575V3, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N4 MUTATED        4      4      5
  OR4N4 WILD-TYPE     83     76     95
D575V4, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             4              76
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N4 MUTATED        4      4      8
  OR4N4 WILD-TYPE     85    156    130
D575V5, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             156
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N4 MUTATED        9      3      4
  OR4N4 WILD-TYPE    173    130     68
D575V6, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N4 MUTATED        5      5      3      5
  OR4N4 WILD-TYPE    107     91     89    181
D575V7, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4N4 MUTATED        3      2      2      3      4      0      4
  OR4N4 WILD-TYPE     57     48     47     37     59    125     95
D575V8, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             3              37
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N4 MUTATED        6      2      5      4
  OR4N4 WILD-TYPE    124     76     63    192
D575V9, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             5              63
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4N4 MUTATED        1      3      3      2      3      2      3      0
  OR4N4 WILD-TYPE     39     59     25     78     66     46     40     28
                 vv
clus              CLUS_9
  OR4N4 MUTATED        0
  OR4N4 WILD-TYPE     74
D575V10, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N4 MUTATED        2      3      2      0
  OR4N4 WILD-TYPE     31     28     25     19
D575V11, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N4 MUTATED        1      1      2      3
  OR4N4 WILD-TYPE     53      9     22     19
D575V12, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(576) Variable = CHEK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHEK2 MUTATED        1      0      0      1
  CHEK2 WILD-TYPE     45     58     64     42
D576V1, multiclass
[1] "Remove cluster labels:" "CHEK2 MUTATED"         
clus
  CHEK2 MUTATED CHEK2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AY-4071 
"CHEK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHEK2 MUTATED        2      0      0
  CHEK2 WILD-TYPE     49     83     77
D576V2, multiclass
[1] "Remove cluster labels:" "CHEK2 MUTATED"         
clus
  CHEK2 MUTATED CHEK2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AY-4071 
"CHEK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHEK2 MUTATED        7      1      1      0
  CHEK2 WILD-TYPE    171    182    100     20
D576V3, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHEK2 MUTATED        5      2      1
  CHEK2 WILD-TYPE     82     78     99
D576V4, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHEK2 MUTATED        0      1      9
  CHEK2 WILD-TYPE     89    159    129
D576V5, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHEK2 MUTATED        9      1      0
  CHEK2 WILD-TYPE    173    132     72
D576V6, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHEK2 MUTATED        2      2      4      2
  CHEK2 WILD-TYPE    110     94     88    184
D576V7, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHEK2 MUTATED        2      1      4      0      1      0      2
  CHEK2 WILD-TYPE     58     49     45     40     62    125     97
D576V8, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHEK2 MUTATED        2      3      2      2
  CHEK2 WILD-TYPE    128     75     66    194
D576V9, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHEK2 MUTATED        1      3      0      0      3      0      2      0
  CHEK2 WILD-TYPE     39     59     28     80     66     48     41     28
                 vv
clus              CLUS_9
  CHEK2 MUTATED        0
  CHEK2 WILD-TYPE     74
D576V10, multiclass
        clus
vv       CHEK2 MUTATED CHEK2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHEK2 MUTATED        0      0      0      2
  CHEK2 WILD-TYPE     33     31     27     17
D576V11, multiclass
[1] "Remove cluster labels:" "CHEK2 MUTATED"         
clus
  CHEK2 MUTATED CHEK2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHEK2 MUTATED        1      0      1      0
  CHEK2 WILD-TYPE     53     10     23     22
D576V12, multiclass
[1] "Remove cluster labels:" "CHEK2 MUTATED"         
clus
  CHEK2 MUTATED CHEK2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" "CHEK2 WILD-TYPE" 

Clustering(577) Variable = GTF2IRD2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2IRD2 MUTATED        0      0      0      0
  GTF2IRD2 WILD-TYPE     46     58     64     43
D577V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GTF2IRD2 MUTATED        0      0      0
  GTF2IRD2 WILD-TYPE     51     83     77
D577V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2IRD2 MUTATED        4      1      1      0
  GTF2IRD2 WILD-TYPE    174    182    100     20
D577V3, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GTF2IRD2 MUTATED        2      2      2
  GTF2IRD2 WILD-TYPE     85     78     98
D577V4, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                2                 78
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GTF2IRD2 MUTATED        0      0      6
  GTF2IRD2 WILD-TYPE     89    160    132
D577V5, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                0                160
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GTF2IRD2 MUTATED        6      0      0
  GTF2IRD2 WILD-TYPE    176    133     72
D577V6, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                0                133
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2IRD2 MUTATED        1      2      3      0
  GTF2IRD2 WILD-TYPE    111     94     89    186
D577V7, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                 94
  CLUS_3                3                 89
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF2IRD2 MUTATED        0      1      2      0      3      0      0
  GTF2IRD2 WILD-TYPE     60     49     47     40     60    125     99
D577V8, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                3                 60
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2IRD2 MUTATED        4      1      0      1
  GTF2IRD2 WILD-TYPE    126     77     68    195
D577V9, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GTF2IRD2 MUTATED        2      2      0      1      1      0      0      0
  GTF2IRD2 WILD-TYPE     38     60     28     79     68     48     43     28
                    vv
clus                 CLUS_9
  GTF2IRD2 MUTATED        0
  GTF2IRD2 WILD-TYPE     74
D577V10, multiclass
        clus
vv       GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2IRD2 MUTATED        1      0      0      0
  GTF2IRD2 WILD-TYPE     32     31     27     19
D577V11, multiclass
[1] "Remove cluster labels:" "GTF2IRD2 MUTATED"      
clus
  GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-6167         TCGA-CM-6674 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-G5-6641 
"GTF2IRD2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2IRD2 MUTATED        1      0      0      0
  GTF2IRD2 WILD-TYPE     53     10     24     22
D577V12, multiclass
[1] "Remove cluster labels:" "GTF2IRD2 MUTATED"      
clus
  GTF2IRD2 MUTATED GTF2IRD2 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-6167         TCGA-CM-6674 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" "GTF2IRD2 WILD-TYPE" 
        TCGA-G5-6641 
"GTF2IRD2 WILD-TYPE" 

Clustering(578) Variable = AKAP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP9 MUTATED        9      0      1      7
  AKAP9 WILD-TYPE     37     58     63     36
D578V1, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             9              37
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP9 MUTATED       11      3      3
  AKAP9 WILD-TYPE     40     80     74
D578V2, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1            11              40
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP9 MUTATED       37      7      5      1
  AKAP9 WILD-TYPE    141    176     96     19
D578V3, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1            37             141
  CLUS_2             7             176
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP9 MUTATED       12      7     14
  AKAP9 WILD-TYPE     75     73     86
D578V4, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1            12              75
  CLUS_2             7              73
  CLUS_3            14              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP9 MUTATED        7     16     17
  AKAP9 WILD-TYPE     82    144    121
D578V5, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             7              82
  CLUS_2            16             144
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP9 MUTATED       19     13      8
  AKAP9 WILD-TYPE    163    120     64
D578V6, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1            19             163
  CLUS_2            13             120
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP9 MUTATED        6     16     11     17
  AKAP9 WILD-TYPE    106     80     81    169
D578V7, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             6             106
  CLUS_2            16              80
  CLUS_3            11              81
  CLUS_4            17             169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKAP9 MUTATED        4      3     12      6      7      3     15
  AKAP9 WILD-TYPE     56     47     37     34     56    122     84
D578V8, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3            12              37
  CLUS_4             6              34
  CLUS_5             7              56
  CLUS_6             3             122
  CLUS_7            15              84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP9 MUTATED       16     10      2     21
  AKAP9 WILD-TYPE    114     68     66    175
D578V9, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1            16             114
  CLUS_2            10              68
  CLUS_3             2              66
  CLUS_4            21             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AKAP9 MUTATED        6      9      5      5     15      1      3      3
  AKAP9 WILD-TYPE     34     53     23     75     54     47     40     25
                 vv
clus              CLUS_9
  AKAP9 MUTATED        2
  AKAP9 WILD-TYPE     72
D578V10, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             6              34
  CLUS_2             9              53
  CLUS_3             5              23
  CLUS_4             5              75
  CLUS_5            15              54
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             3              25
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP9 MUTATED        1      3      2      5
  AKAP9 WILD-TYPE     32     28     25     14
D578V11, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP9 MUTATED        9      1      1      0
  AKAP9 WILD-TYPE     45      9     23     22
D578V12, multiclass
        clus
vv       AKAP9 MUTATED AKAP9 WILD-TYPE
  CLUS_1             9              45
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(579) Variable = ABI3BP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABI3BP MUTATED        2      0      1      2
  ABI3BP WILD-TYPE     44     58     63     41
D579V1, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABI3BP MUTATED        2      3      0
  ABI3BP WILD-TYPE     49     80     77
D579V2, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABI3BP MUTATED       13      5      5      0
  ABI3BP WILD-TYPE    165    178     96     20
D579V3, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1             13              165
  CLUS_2              5              178
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABI3BP MUTATED        9      3      5
  ABI3BP WILD-TYPE     78     77     95
D579V4, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              9               78
  CLUS_2              3               77
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABI3BP MUTATED        1      7     11
  ABI3BP WILD-TYPE     88    153    127
D579V5, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              1               88
  CLUS_2              7              153
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABI3BP MUTATED       11      6      2
  ABI3BP WILD-TYPE    171    127     70
D579V6, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1             11              171
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABI3BP MUTATED        6      4      6      7
  ABI3BP WILD-TYPE    106     92     86    179
D579V7, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              6              106
  CLUS_2              4               92
  CLUS_3              6               86
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABI3BP MUTATED        5      1      4      0      5      3      5
  ABI3BP WILD-TYPE     55     49     45     40     58    122     94
D579V8, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              5               55
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              5               58
  CLUS_6              3              122
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABI3BP MUTATED        9      4      3      6
  ABI3BP WILD-TYPE    121     74     65    190
D579V9, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              3               65
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABI3BP MUTATED        1      5      1      4      5      2      3      0
  ABI3BP WILD-TYPE     39     57     27     76     64     46     40     28
                  vv
clus               CLUS_9
  ABI3BP MUTATED        1
  ABI3BP WILD-TYPE     73
D579V10, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              1               39
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              5               64
  CLUS_6              2               46
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABI3BP MUTATED        1      1      0      4
  ABI3BP WILD-TYPE     32     30     27     15
D579V11, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABI3BP MUTATED        4      0      1      1
  ABI3BP WILD-TYPE     50     10     23     21
D579V12, multiclass
        clus
vv       ABI3BP MUTATED ABI3BP WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(580) Variable = ENTPD4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD4 MUTATED        2      0      0      1
  ENTPD4 WILD-TYPE     44     58     64     42
D580V1, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD4 MUTATED        2      1      0
  ENTPD4 WILD-TYPE     49     82     77
D580V2, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD4 MUTATED       14      2      2      0
  ENTPD4 WILD-TYPE    164    181     99     20
D580V3, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD4 MUTATED        6      2      5
  ENTPD4 WILD-TYPE     81     78     95
D580V4, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD4 MUTATED        5      3      7
  ENTPD4 WILD-TYPE     84    157    131
D580V5, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD4 MUTATED        7      6      2
  ENTPD4 WILD-TYPE    175    127     70
D580V6, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD4 MUTATED        3      6      5      4
  ENTPD4 WILD-TYPE    109     90     87    182
D580V7, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              6               90
  CLUS_3              5               87
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENTPD4 MUTATED        1      0      8      3      2      0      4
  ENTPD4 WILD-TYPE     59     50     41     37     61    125     95
D580V8, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD4 MUTATED        8      4      0      6
  ENTPD4 WILD-TYPE    122     74     68    190
D580V9, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ENTPD4 MUTATED        3      4      1      0      5      2      1      2
  ENTPD4 WILD-TYPE     37     58     27     80     64     46     42     26
                  vv
clus               CLUS_9
  ENTPD4 MUTATED        0
  ENTPD4 WILD-TYPE     74
D580V10, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD4 MUTATED        0      2      0      2
  ENTPD4 WILD-TYPE     33     29     27     17
D580V11, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD4 MUTATED        3      0      1      0
  ENTPD4 WILD-TYPE     51     10     23     22
D580V12, multiclass
        clus
vv       ENTPD4 MUTATED ENTPD4 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(581) Variable = HFE2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HFE2 MUTATED        1      0      0      1
  HFE2 WILD-TYPE     45     58     64     42
D581V1, multiclass
[1] "Remove cluster labels:" "HFE2 MUTATED"          
clus
  HFE2 MUTATED HFE2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AY-4071 
"HFE2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HFE2 MUTATED        1      0      1
  HFE2 WILD-TYPE     50     83     76
D581V2, multiclass
[1] "Remove cluster labels:" "HFE2 MUTATED"          
clus
  HFE2 MUTATED HFE2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AY-4071 
"HFE2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HFE2 MUTATED        4      3      1      1
  HFE2 WILD-TYPE    174    180    100     19
D581V3, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HFE2 MUTATED        1      3      1
  HFE2 WILD-TYPE     86     77     99
D581V4, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HFE2 MUTATED        1      5      3
  HFE2 WILD-TYPE     88    155    135
D581V5, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HFE2 MUTATED        3      6      0
  HFE2 WILD-TYPE    179    127     72
D581V6, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HFE2 MUTATED        4      1      1      4
  HFE2 WILD-TYPE    108     95     91    182
D581V7, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HFE2 MUTATED        3      2      1      1      0      1      2
  HFE2 WILD-TYPE     57     48     48     39     63    124     97
D581V8, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HFE2 MUTATED        4      1      1      4
  HFE2 WILD-TYPE    126     77     67    192
D581V9, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HFE2 MUTATED        0      1      0      1      3      3      1      0      1
  HFE2 WILD-TYPE     40     61     28     79     66     45     42     28     73
D581V10, multiclass
        clus
vv       HFE2 MUTATED HFE2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            3             45
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HFE2 MUTATED        0      0      1      1
  HFE2 WILD-TYPE     33     31     26     18
D581V11, multiclass
[1] "Remove cluster labels:" "HFE2 MUTATED"          
clus
  HFE2 MUTATED HFE2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HFE2 MUTATED        1      0      1      0
  HFE2 WILD-TYPE     53     10     23     22
D581V12, multiclass
[1] "Remove cluster labels:" "HFE2 MUTATED"          
clus
  HFE2 MUTATED HFE2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" "HFE2 WILD-TYPE" 

Clustering(582) Variable = SPCS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPCS2 MUTATED        0      0      0      0
  SPCS2 WILD-TYPE     46     58     64     43
D582V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPCS2 MUTATED        0      0      0
  SPCS2 WILD-TYPE     51     83     77
D582V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPCS2 MUTATED        2      2      1      0
  SPCS2 WILD-TYPE    176    181    100     20
D582V3, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPCS2 MUTATED        0      4      1
  SPCS2 WILD-TYPE     87     76     99
D582V4, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             4              76
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPCS2 MUTATED        0      4      1
  SPCS2 WILD-TYPE     89    156    137
D582V5, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPCS2 MUTATED        0      4      1
  SPCS2 WILD-TYPE    182    129     71
D582V6, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             0             182
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPCS2 MUTATED        3      1      1      0
  SPCS2 WILD-TYPE    109     95     91    186
D582V7, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPCS2 MUTATED        2      1      0      1      1      0      0
  SPCS2 WILD-TYPE     58     49     49     39     62    125     99
D582V8, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPCS2 MUTATED        3      0      2      0
  SPCS2 WILD-TYPE    127     78     66    196
D582V9, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPCS2 MUTATED        3      0      0      0      0      0      2      0
  SPCS2 WILD-TYPE     37     62     28     80     69     48     41     28
                 vv
clus              CLUS_9
  SPCS2 MUTATED        0
  SPCS2 WILD-TYPE     74
D582V10, multiclass
        clus
vv       SPCS2 MUTATED SPCS2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPCS2 MUTATED        0      0      0      0
  SPCS2 WILD-TYPE     33     31     27     19
D582V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPCS2 MUTATED        0      0      0      0
  SPCS2 WILD-TYPE     54     10     24     22
D582V12, multiclass

Clustering(583) Variable = RAD51AP2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        3      0      0      4
  RAD51AP2 WILD-TYPE     43     58     64     39
D583V1, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        3      2      2
  RAD51AP2 WILD-TYPE     48     81     75
D583V2, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED       17      0      1      0
  RAD51AP2 WILD-TYPE    161    183    100     20
D583V3, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1               17                161
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        4      0      9
  RAD51AP2 WILD-TYPE     83     80     91
D583V4, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                0                 80
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        1      4      9
  RAD51AP2 WILD-TYPE     88    156    129
D583V5, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3                9                129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        8      4      2
  RAD51AP2 WILD-TYPE    174    129     70
D583V6, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                8                174
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        1      8      3      7
  RAD51AP2 WILD-TYPE    111     88     89    179
D583V7, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                8                 88
  CLUS_3                3                 89
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAD51AP2 MUTATED        2      2      7      2      0      1      5
  RAD51AP2 WILD-TYPE     58     48     42     38     63    124     94
D583V8, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                2                 48
  CLUS_3                7                 42
  CLUS_4                2                 38
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        5      2      2      9
  RAD51AP2 WILD-TYPE    125     76     66    187
D583V9, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                2                 76
  CLUS_3                2                 66
  CLUS_4                9                187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAD51AP2 MUTATED        2      3      2      4      3      0      3      0
  RAD51AP2 WILD-TYPE     38     59     26     76     66     48     40     28
                    vv
clus                 CLUS_9
  RAD51AP2 MUTATED        1
  RAD51AP2 WILD-TYPE     73
D583V10, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                2                 26
  CLUS_4                4                 76
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        1      0      2      1
  RAD51AP2 WILD-TYPE     32     31     25     18
D583V11, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                2                 25
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        2      0      1      1
  RAD51AP2 WILD-TYPE     52     10     23     21
D583V12, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(584) Variable = BMPR1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1A MUTATED        3      0      0      2
  BMPR1A WILD-TYPE     43     58     64     41
D584V1, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1A MUTATED        4      0      1
  BMPR1A WILD-TYPE     47     83     76
D584V2, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1A MUTATED       11      0      5      2
  BMPR1A WILD-TYPE    167    183     96     18
D584V3, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              5               96
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1A MUTATED        8      1      4
  BMPR1A WILD-TYPE     79     79     96
D584V4, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              8               79
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1A MUTATED        2      4      8
  BMPR1A WILD-TYPE     87    156    130
D584V5, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1A MUTATED       10      2      2
  BMPR1A WILD-TYPE    172    131     70
D584V6, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1             10              172
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1A MUTATED        3      5      4      6
  BMPR1A WILD-TYPE    109     91     88    180
D584V7, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BMPR1A MUTATED        2      2      5      1      2      0      6
  BMPR1A WILD-TYPE     58     48     44     39     61    125     93
D584V8, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1A MUTATED        7      3      2      6
  BMPR1A WILD-TYPE    123     75     66    190
D584V9, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BMPR1A MUTATED        3      3      1      1      6      0      2      1
  BMPR1A WILD-TYPE     37     59     27     79     63     48     41     27
                  vv
clus               CLUS_9
  BMPR1A MUTATED        1
  BMPR1A WILD-TYPE     73
D584V10, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1A MUTATED        2      0      1      1
  BMPR1A WILD-TYPE     31     31     26     18
D584V11, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1A MUTATED        3      0      0      1
  BMPR1A WILD-TYPE     51     10     24     21
D584V12, multiclass
        clus
vv       BMPR1A MUTATED BMPR1A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(585) Variable = MLL4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        5      1      2      3
  MLL4 WILD-TYPE     41     57     62     40
D585V1, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        5      3      3
  MLL4 WILD-TYPE     46     80     74
D585V2, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            3             80
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED       30      1      6      2
  MLL4 WILD-TYPE    148    182     95     18
D585V3, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           30            148
  CLUS_2            1            182
  CLUS_3            6             95
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        6      2     20
  MLL4 WILD-TYPE     81     78     80
D585V4, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3           20             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        5     11     17
  MLL4 WILD-TYPE     84    149    121
D585V5, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           11            149
  CLUS_3           17            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       17      9      7
  MLL4 WILD-TYPE    165    124     65
D585V6, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           17            165
  CLUS_2            9            124
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        4     18      7     10
  MLL4 WILD-TYPE    108     78     85    176
D585V7, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            4            108
  CLUS_2           18             78
  CLUS_3            7             85
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLL4 MUTATED        4      4     19      2      0      3      7
  MLL4 WILD-TYPE     56     46     30     38     63    122     92
D585V8, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            4             46
  CLUS_3           19             30
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            3            122
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED       20      2      1     16
  MLL4 WILD-TYPE    110     76     67    180
D585V9, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           20            110
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MLL4 MUTATED        2      5      5      2     19      2      2      1      1
  MLL4 WILD-TYPE     38     57     23     78     50     46     41     27     73
D585V10, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            5             23
  CLUS_4            2             78
  CLUS_5           19             50
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        4      0      1      6
  MLL4 WILD-TYPE     29     31     26     13
D585V11, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            6             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        6      0      3      2
  MLL4 WILD-TYPE     48     10     21     20
D585V12, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(586) Variable = KIF21A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        4      0      1      3
  KIF21A WILD-TYPE     42     58     63     40
D586V1, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21A MUTATED        4      2      2
  KIF21A WILD-TYPE     47     81     75
D586V2, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED       20      0      8      0
  KIF21A WILD-TYPE    158    183     93     20
D586V3, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1             20              158
  CLUS_2              0              183
  CLUS_3              8               93
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21A MUTATED        8      3     10
  KIF21A WILD-TYPE     79     77     90
D586V4, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              8               79
  CLUS_2              3               77
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21A MUTATED        2      5     13
  KIF21A WILD-TYPE     87    155    125
D586V5, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21A MUTATED       13      5      2
  KIF21A WILD-TYPE    169    128     70
D586V6, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1             13              169
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        3     10      8      8
  KIF21A WILD-TYPE    109     86     84    178
D586V7, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              3              109
  CLUS_2             10               86
  CLUS_3              8               84
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF21A MUTATED        1      4     11      1      5      2      5
  KIF21A WILD-TYPE     59     46     38     39     58    123     94
D586V8, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3             11               38
  CLUS_4              1               39
  CLUS_5              5               58
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED       12      4      2     10
  KIF21A WILD-TYPE    118     74     66    186
D586V9, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1             12              118
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF21A MUTATED        3      5      2      5     11      0      1      0
  KIF21A WILD-TYPE     37     57     26     75     58     48     42     28
                  vv
clus               CLUS_9
  KIF21A MUTATED        1
  KIF21A WILD-TYPE     73
D586V10, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              5               75
  CLUS_5             11               58
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        2      0      2      3
  KIF21A WILD-TYPE     31     31     25     16
D586V11, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        3      0      3      1
  KIF21A WILD-TYPE     51     10     21     21
D586V12, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(587) Variable = ZNF286A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286A MUTATED        1      0      0      2
  ZNF286A WILD-TYPE     45     58     64     41
D587V1, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286A MUTATED        0      2      1
  ZNF286A WILD-TYPE     51     81     76
D587V2, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286A MUTATED        8      0      1      0
  ZNF286A WILD-TYPE    170    183    100     20
D587V3, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286A MUTATED        5      0      1
  ZNF286A WILD-TYPE     82     80     99
D587V4, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286A MUTATED        2      2      4
  ZNF286A WILD-TYPE     87    158    134
D587V5, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286A MUTATED        3      3      2
  ZNF286A WILD-TYPE    179    130     70
D587V6, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286A MUTATED        0      2      4      3
  ZNF286A WILD-TYPE    112     94     88    183
D587V7, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF286A MUTATED        1      2      2      1      1      1      1
  ZNF286A WILD-TYPE     59     48     47     39     62    124     98
D587V8, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286A MUTATED        1      4      0      4
  ZNF286A WILD-TYPE    129     74     68    192
D587V9, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               1               129
  CLUS_2               4                74
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF286A MUTATED        1      3      1      2      1      0      0      0
  ZNF286A WILD-TYPE     39     59     27     78     68     48     43     28
                   vv
clus                CLUS_9
  ZNF286A MUTATED        1
  ZNF286A WILD-TYPE     73
D587V10, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286A MUTATED        1      1      0      2
  ZNF286A WILD-TYPE     32     30     27     17
D587V11, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286A MUTATED        3      0      0      1
  ZNF286A WILD-TYPE     51     10     24     21
D587V12, multiclass
        clus
vv       ZNF286A MUTATED ZNF286A WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(588) Variable = AK3L1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK3L1 MUTATED        0      0      0      0
  AK3L1 WILD-TYPE     46     58     64     43
D588V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AK3L1 MUTATED        0      0      0
  AK3L1 WILD-TYPE     51     83     77
D588V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK3L1 MUTATED        4      0      0      0
  AK3L1 WILD-TYPE    174    183    101     20
D588V3, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AK3L1 MUTATED        2      0      2
  AK3L1 WILD-TYPE     85     80     98
D588V4, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AK3L1 MUTATED        0      0      4
  AK3L1 WILD-TYPE     89    160    134
D588V5, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             0             160
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AK3L1 MUTATED        2      2      0
  AK3L1 WILD-TYPE    180    131     72
D588V6, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK3L1 MUTATED        1      1      2      0
  AK3L1 WILD-TYPE    111     95     90    186
D588V7, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AK3L1 MUTATED        0      1      1      1      1      0      0
  AK3L1 WILD-TYPE     60     49     48     39     62    125     99
D588V8, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK3L1 MUTATED        2      2      0      0
  AK3L1 WILD-TYPE    128     76     68    196
D588V9, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AK3L1 MUTATED        1      2      0      0      0      1      0      0
  AK3L1 WILD-TYPE     39     60     28     80     69     47     43     28
                 vv
clus              CLUS_9
  AK3L1 MUTATED        0
  AK3L1 WILD-TYPE     74
D588V10, multiclass
        clus
vv       AK3L1 MUTATED AK3L1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK3L1 MUTATED        2      0      0      0
  AK3L1 WILD-TYPE     31     31     27     19
D588V11, multiclass
[1] "Remove cluster labels:" "AK3L1 MUTATED"         
clus
  AK3L1 MUTATED AK3L1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5869      TCGA-DC-6157 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AK3L1 MUTATED        1      0      0      1
  AK3L1 WILD-TYPE     53     10     24     21
D588V12, multiclass
[1] "Remove cluster labels:" "AK3L1 MUTATED"         
clus
  AK3L1 MUTATED AK3L1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5869      TCGA-DC-6157 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" "AK3L1 WILD-TYPE" 

Clustering(589) Variable = PIK3C3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C3 MUTATED        1      0      0      4
  PIK3C3 WILD-TYPE     45     58     64     39
D589V1, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3C3 MUTATED        4      0      1
  PIK3C3 WILD-TYPE     47     83     76
D589V2, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C3 MUTATED       18      7      1      0
  PIK3C3 WILD-TYPE    160    176    100     20
D589V3, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              7              176
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3C3 MUTATED        8      6      6
  PIK3C3 WILD-TYPE     79     74     94
D589V4, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              6               74
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3C3 MUTATED        5      6     12
  PIK3C3 WILD-TYPE     84    154    126
D589V5, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              6              154
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3C3 MUTATED       15      6      2
  PIK3C3 WILD-TYPE    167    127     70
D589V6, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1             15              167
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C3 MUTATED        5      6      8      7
  PIK3C3 WILD-TYPE    107     90     84    179
D589V7, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              6               90
  CLUS_3              8               84
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3C3 MUTATED        4      3      9      1      3      1      5
  PIK3C3 WILD-TYPE     56     47     40     39     60    124     94
D589V8, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              3               47
  CLUS_3              9               40
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C3 MUTATED        9      6      3      8
  PIK3C3 WILD-TYPE    121     72     65    188
D589V9, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              6               72
  CLUS_3              3               65
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3C3 MUTATED        2      8      1      1      9      1      4      0
  PIK3C3 WILD-TYPE     38     54     27     79     60     47     39     28
                  vv
clus               CLUS_9
  PIK3C3 MUTATED        0
  PIK3C3 WILD-TYPE     74
D589V10, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              8               54
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              9               60
  CLUS_6              1               47
  CLUS_7              4               39
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C3 MUTATED        0      1      1      4
  PIK3C3 WILD-TYPE     33     30     26     15
D589V11, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C3 MUTATED        3      1      1      1
  PIK3C3 WILD-TYPE     51      9     23     21
D589V12, multiclass
        clus
vv       PIK3C3 MUTATED PIK3C3 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(590) Variable = POLE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE MUTATED        5      0      1      9
  POLE WILD-TYPE     41     58     63     34
D590V1, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            9             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLE MUTATED       10      2      3
  POLE WILD-TYPE     41     81     74
D590V2, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1           10             41
  CLUS_2            2             81
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE MUTATED       26      2      4      1
  POLE WILD-TYPE    152    181     97     19
D590V3, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1           26            152
  CLUS_2            2            181
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLE MUTATED        9      3      7
  POLE WILD-TYPE     78     77     93
D590V4, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            9             78
  CLUS_2            3             77
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLE MUTATED        4      8     13
  POLE WILD-TYPE     85    152    125
D590V5, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            4             85
  CLUS_2            8            152
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLE MUTATED       14      7      4
  POLE WILD-TYPE    168    126     68
D590V6, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1           14            168
  CLUS_2            7            126
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE MUTATED        4      8      6     16
  POLE WILD-TYPE    108     88     86    170
D590V7, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            4            108
  CLUS_2            8             88
  CLUS_3            6             86
  CLUS_4           16            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POLE MUTATED        3      4      9      0      2      3     13
  POLE WILD-TYPE     57     46     40     40     61    122     86
D590V8, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3            9             40
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            3            122
  CLUS_7           13             86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE MUTATED        8      7      1     17
  POLE WILD-TYPE    122     71     67    179
D590V9, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            8            122
  CLUS_2            7             71
  CLUS_3            1             67
  CLUS_4           17            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  POLE MUTATED        2      6      5      2     10      2      2      1      3
  POLE WILD-TYPE     38     56     23     78     59     46     41     27     71
D590V10, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            5             23
  CLUS_4            2             78
  CLUS_5           10             59
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE MUTATED        4      1      0      3
  POLE WILD-TYPE     29     30     27     16
D590V11, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE MUTATED        6      1      1      0
  POLE WILD-TYPE     48      9     23     22
D590V12, multiclass
        clus
vv       POLE MUTATED POLE WILD-TYPE
  CLUS_1            6             48
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(591) Variable = PNP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNP MUTATED        1      0      0      0
  PNP WILD-TYPE     45     58     64     43
D591V1, multiclass
[1] "Remove cluster labels:" "PNP MUTATED"           
clus
  PNP MUTATED PNP WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PNP MUTATED        1      0      0
  PNP WILD-TYPE     50     83     77
D591V2, multiclass
[1] "Remove cluster labels:" "PNP MUTATED"           
clus
  PNP MUTATED PNP WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNP MUTATED        3      0      0      1
  PNP WILD-TYPE    175    183    101     19
D591V3, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           3           175
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PNP MUTATED        0      1      2
  PNP WILD-TYPE     87     79     98
D591V4, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           0            87
  CLUS_2           1            79
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PNP MUTATED        1      1      1
  PNP WILD-TYPE     88    159    137
D591V5, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           1            88
  CLUS_2           1           159
  CLUS_3           1           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PNP MUTATED        1      1      1
  PNP WILD-TYPE    181    132     71
D591V6, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           1           181
  CLUS_2           1           132
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNP MUTATED        1      2      0      1
  PNP WILD-TYPE    111     94     92    185
D591V7, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           1           111
  CLUS_2           2            94
  CLUS_3           0            92
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNP MUTATED        1      0      2      0      0      0      1
  PNP WILD-TYPE     59     50     47     40     63    125     98
D591V8, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNP MUTATED        2      0      0      2
  PNP WILD-TYPE    128     78     68    194
D591V9, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           2           128
  CLUS_2           0            78
  CLUS_3           0            68
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PNP MUTATED        0      0      0      0      3      1      0      0      0
  PNP WILD-TYPE     40     62     28     80     66     47     43     28     74
D591V10, multiclass
        clus
vv       PNP MUTATED PNP WILD-TYPE
  CLUS_1           0            40
  CLUS_2           0            62
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           3            66
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNP MUTATED        0      0      0      1
  PNP WILD-TYPE     33     31     27     18
D591V11, multiclass
[1] "Remove cluster labels:" "PNP MUTATED"           
clus
  PNP MUTATED PNP WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6600 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNP MUTATED        0      0      1      0
  PNP WILD-TYPE     54     10     23     22
D591V12, multiclass
[1] "Remove cluster labels:" "PNP MUTATED"           
clus
  PNP MUTATED PNP WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6600 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" "PNP WILD-TYPE" 

Clustering(592) Variable = ZNF570 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        3      0      0      1
  ZNF570 WILD-TYPE     43     58     64     42
D592V1, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF570 MUTATED        2      1      1
  ZNF570 WILD-TYPE     49     82     76
D592V2, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        7      2      1      0
  ZNF570 WILD-TYPE    171    181    100     20
D592V3, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF570 MUTATED        2      2      4
  ZNF570 WILD-TYPE     85     78     96
D592V4, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF570 MUTATED        1      3      6
  ZNF570 WILD-TYPE     88    157    132
D592V5, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF570 MUTATED        5      3      2
  ZNF570 WILD-TYPE    177    130     70
D592V6, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        1      3      4      3
  ZNF570 WILD-TYPE    111     93     88    183
D592V7, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF570 MUTATED        1      1      4      1      1      1      2
  ZNF570 WILD-TYPE     59     49     45     39     62    124     97
D592V8, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        4      1      1      5
  ZNF570 WILD-TYPE    126     77     67    191
D592V9, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF570 MUTATED        1      2      0      1      5      0      0      2
  ZNF570 WILD-TYPE     39     60     28     79     64     48     43     26
                  vv
clus               CLUS_9
  ZNF570 MUTATED        0
  ZNF570 WILD-TYPE     74
D592V10, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        0      0      1      2
  ZNF570 WILD-TYPE     33     31     26     17
D592V11, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        1      0      2      0
  ZNF570 WILD-TYPE     53     10     22     22
D592V12, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(593) Variable = TNPO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNPO1 MUTATED        4      0      1      2
  TNPO1 WILD-TYPE     42     58     63     41
D593V1, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNPO1 MUTATED        4      2      1
  TNPO1 WILD-TYPE     47     81     76
D593V2, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNPO1 MUTATED       13      1      3      0
  TNPO1 WILD-TYPE    165    182     98     20
D593V3, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNPO1 MUTATED        5      1      5
  TNPO1 WILD-TYPE     82     79     95
D593V4, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNPO1 MUTATED        2      6      4
  TNPO1 WILD-TYPE     87    154    134
D593V5, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNPO1 MUTATED        5      5      2
  TNPO1 WILD-TYPE    177    128     70
D593V6, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNPO1 MUTATED        3      4      2      8
  TNPO1 WILD-TYPE    109     92     90    178
D593V7, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNPO1 MUTATED        2      3      4      0      0      2      6
  TNPO1 WILD-TYPE     58     47     45     40     63    123     93
D593V8, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNPO1 MUTATED        7      1      1      8
  TNPO1 WILD-TYPE    123     77     67    188
D593V9, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNPO1 MUTATED        1      2      2      3      3      2      2      0
  TNPO1 WILD-TYPE     39     60     26     77     66     46     41     28
                 vv
clus              CLUS_9
  TNPO1 MUTATED        2
  TNPO1 WILD-TYPE     72
D593V10, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNPO1 MUTATED        2      0      0      2
  TNPO1 WILD-TYPE     31     31     27     17
D593V11, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNPO1 MUTATED        3      0      1      0
  TNPO1 WILD-TYPE     51     10     23     22
D593V12, multiclass
        clus
vv       TNPO1 MUTATED TNPO1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(594) Variable = MAP9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        2      1      0      0
  MAP9 WILD-TYPE     44     57     64     43
D594V1, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP9 MUTATED        2      0      1
  MAP9 WILD-TYPE     49     83     76
D594V2, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED       11      2      5      0
  MAP9 WILD-TYPE    167    181     96     20
D594V3, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            2            181
  CLUS_3            5             96
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP9 MUTATED        7      3      5
  MAP9 WILD-TYPE     80     77     95
D594V4, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            3             77
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP9 MUTATED        2      4      8
  MAP9 WILD-TYPE     87    156    130
D594V5, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP9 MUTATED        9      4      1
  MAP9 WILD-TYPE    173    129     71
D594V6, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        3      5      7      3
  MAP9 WILD-TYPE    109     91     85    183
D594V7, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            7             85
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP9 MUTATED        3      1      6      0      5      1      2
  MAP9 WILD-TYPE     57     49     43     40     58    124     97
D594V8, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            5             58
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED       11      4      0      3
  MAP9 WILD-TYPE    119     74     68    193
D594V9, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MAP9 MUTATED        2      5      0      4      5      2      0      0      0
  MAP9 WILD-TYPE     38     57     28     76     64     46     43     28     74
D594V10, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            0             28
  CLUS_4            4             76
  CLUS_5            5             64
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        0      3      0      2
  MAP9 WILD-TYPE     33     28     27     17
D594V11, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            3             28
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        3      1      1      0
  MAP9 WILD-TYPE     51      9     23     22
D594V12, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(595) Variable = ITPR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR1 MUTATED        4      0      0      7
  ITPR1 WILD-TYPE     42     58     64     36
D595V1, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR1 MUTATED        7      1      3
  ITPR1 WILD-TYPE     44     82     74
D595V2, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR1 MUTATED       30      6      2      1
  ITPR1 WILD-TYPE    148    177     99     19
D595V3, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1            30             148
  CLUS_2             6             177
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR1 MUTATED       11      6     11
  ITPR1 WILD-TYPE     76     74     89
D595V4, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             6              74
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR1 MUTATED        7     13     17
  ITPR1 WILD-TYPE     82    147    121
D595V5, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             7              82
  CLUS_2            13             147
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR1 MUTATED       17     14      6
  ITPR1 WILD-TYPE    165    119     66
D595V6, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1            17             165
  CLUS_2            14             119
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR1 MUTATED        8     10     10     12
  ITPR1 WILD-TYPE    104     86     82    174
D595V7, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             8             104
  CLUS_2            10              86
  CLUS_3            10              82
  CLUS_4            12             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITPR1 MUTATED        6      4     14      3      2      0     11
  ITPR1 WILD-TYPE     54     46     35     37     61    125     88
D595V8, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             4              46
  CLUS_3            14              35
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR1 MUTATED       16      9      2     13
  ITPR1 WILD-TYPE    114     69     66    183
D595V9, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1            16             114
  CLUS_2             9              69
  CLUS_3             2              66
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITPR1 MUTATED        3     10      4      2     12      2      1      2
  ITPR1 WILD-TYPE     37     52     24     78     57     46     42     26
                 vv
clus              CLUS_9
  ITPR1 MUTATED        4
  ITPR1 WILD-TYPE     70
D595V10, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2            10              52
  CLUS_3             4              24
  CLUS_4             2              78
  CLUS_5            12              57
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR1 MUTATED        1      1      2      8
  ITPR1 WILD-TYPE     32     30     25     11
D595V11, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             8              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR1 MUTATED        7      0      3      2
  ITPR1 WILD-TYPE     47     10     21     20
D595V12, multiclass
        clus
vv       ITPR1 MUTATED ITPR1 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(596) Variable = NME7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NME7 MUTATED        0      1      0      3
  NME7 WILD-TYPE     46     57     64     40
D596V1, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NME7 MUTATED        1      2      1
  NME7 WILD-TYPE     50     81     76
D596V2, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NME7 MUTATED        7      1      1      0
  NME7 WILD-TYPE    171    182    100     20
D596V3, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NME7 MUTATED        3      0      1
  NME7 WILD-TYPE     84     80     99
D596V4, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NME7 MUTATED        2      3      3
  NME7 WILD-TYPE     87    157    135
D596V5, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NME7 MUTATED        2      4      2
  NME7 WILD-TYPE    180    129     70
D596V6, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NME7 MUTATED        2      3      0      4
  NME7 WILD-TYPE    110     93     92    182
D596V7, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NME7 MUTATED        1      2      1      1      0      1      3
  NME7 WILD-TYPE     59     48     48     39     63    124     96
D596V8, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NME7 MUTATED        2      1      0      5
  NME7 WILD-TYPE    128     77     68    191
D596V9, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NME7 MUTATED        0      1      1      0      3      1      1      0      1
  NME7 WILD-TYPE     40     61     27     80     66     47     42     28     73
D596V10, multiclass
        clus
vv       NME7 MUTATED NME7 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NME7 MUTATED        0      1      0      0
  NME7 WILD-TYPE     33     30     27     19
D596V11, multiclass
[1] "Remove cluster labels:" "NME7 MUTATED"          
clus
  NME7 MUTATED NME7 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-G5-6641 
"NME7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NME7 MUTATED        1      0      0      0
  NME7 WILD-TYPE     53     10     24     22
D596V12, multiclass
[1] "Remove cluster labels:" "NME7 MUTATED"          
clus
  NME7 MUTATED NME7 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" "NME7 WILD-TYPE" 
    TCGA-G5-6641 
"NME7 WILD-TYPE" 

Clustering(597) Variable = TNFAIP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFAIP3 MUTATED        2      1      1      0
  TNFAIP3 WILD-TYPE     44     57     63     43
D597V1, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFAIP3 MUTATED        2      2      0
  TNFAIP3 WILD-TYPE     49     81     77
D597V2, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFAIP3 MUTATED       20      7      8      2
  TNFAIP3 WILD-TYPE    158    176     93     18
D597V3, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1              20               158
  CLUS_2               7               176
  CLUS_3               8                93
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFAIP3 MUTATED        9      3     21
  TNFAIP3 WILD-TYPE     78     77     79
D597V4, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               3                77
  CLUS_3              21                79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFAIP3 MUTATED        3     12     15
  TNFAIP3 WILD-TYPE     86    148    123
D597V5, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               3                86
  CLUS_2              12               148
  CLUS_3              15               123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFAIP3 MUTATED       16      9      5
  TNFAIP3 WILD-TYPE    166    124     67
D597V6, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1              16               166
  CLUS_2               9               124
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFAIP3 MUTATED        5     17     10      5
  TNFAIP3 WILD-TYPE    107     79     82    181
D597V7, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               5               107
  CLUS_2              17                79
  CLUS_3              10                82
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNFAIP3 MUTATED        4      8     12      4      4      2      3
  TNFAIP3 WILD-TYPE     56     42     37     36     59    123     96
D597V8, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               8                42
  CLUS_3              12                37
  CLUS_4               4                36
  CLUS_5               4                59
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFAIP3 MUTATED       25      5      1      6
  TNFAIP3 WILD-TYPE    105     73     67    190
D597V9, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1              25               105
  CLUS_2               5                73
  CLUS_3               1                67
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNFAIP3 MUTATED        8      6      4      2      8      3      2      0
  TNFAIP3 WILD-TYPE     32     56     24     78     61     45     41     28
                   vv
clus                CLUS_9
  TNFAIP3 MUTATED        4
  TNFAIP3 WILD-TYPE     70
D597V10, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               8                32
  CLUS_2               6                56
  CLUS_3               4                24
  CLUS_4               2                78
  CLUS_5               8                61
  CLUS_6               3                45
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFAIP3 MUTATED        1      0      0      5
  TNFAIP3 WILD-TYPE     32     31     27     14
D597V11, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFAIP3 MUTATED        6      0      0      0
  TNFAIP3 WILD-TYPE     48     10     24     22
D597V12, multiclass
        clus
vv       TNFAIP3 MUTATED TNFAIP3 WILD-TYPE
  CLUS_1               6                48
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(598) Variable = DDX3X MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        1      0      0      1
  DDX3X WILD-TYPE     45     58     64     42
D598V1, multiclass
[1] "Remove cluster labels:" "DDX3X MUTATED"         
clus
  DDX3X MUTATED DDX3X WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AY-4071 
"DDX3X WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        0      2      0
  DDX3X WILD-TYPE     51     81     77
D598V2, multiclass
[1] "Remove cluster labels:" "DDX3X MUTATED"         
clus
  DDX3X MUTATED DDX3X WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AY-4071 
"DDX3X WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        7      1      2      0
  DDX3X WILD-TYPE    171    182     99     20
D598V3, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        4      1      3
  DDX3X WILD-TYPE     83     79     97
D598V4, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        1      2      3
  DDX3X WILD-TYPE     88    158    135
D598V5, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX3X MUTATED        2      2      2
  DDX3X WILD-TYPE    180    131     70
D598V6, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        2      3      3      2
  DDX3X WILD-TYPE    110     93     89    184
D598V7, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX3X MUTATED        0      2      3      1      2      1      1
  DDX3X WILD-TYPE     60     48     46     39     61    124     98
D598V8, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        4      2      1      3
  DDX3X WILD-TYPE    126     76     67    193
D598V9, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX3X MUTATED        2      2      1      3      1      0      1      0
  DDX3X WILD-TYPE     38     60     27     77     68     48     42     28
                 vv
clus              CLUS_9
  DDX3X MUTATED        0
  DDX3X WILD-TYPE     74
D598V10, multiclass
        clus
vv       DDX3X MUTATED DDX3X WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        1      0      0      0
  DDX3X WILD-TYPE     32     31     27     19
D598V11, multiclass
[1] "Remove cluster labels:" "DDX3X MUTATED"         
clus
  DDX3X MUTATED DDX3X WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-G5-6641 
"DDX3X WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX3X MUTATED        1      0      0      0
  DDX3X WILD-TYPE     53     10     24     22
D598V12, multiclass
[1] "Remove cluster labels:" "DDX3X MUTATED"         
clus
  DDX3X MUTATED DDX3X WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" "DDX3X WILD-TYPE" 
     TCGA-G5-6641 
"DDX3X WILD-TYPE" 

Clustering(599) Variable = ETV1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        2      0      0      3
  ETV1 WILD-TYPE     44     58     64     40
D599V1, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETV1 MUTATED        2      2      1
  ETV1 WILD-TYPE     49     81     76
D599V2, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED       12      2      1      0
  ETV1 WILD-TYPE    166    181    100     20
D599V3, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETV1 MUTATED        4      1      5
  ETV1 WILD-TYPE     83     79     95
D599V4, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETV1 MUTATED        1      4      9
  ETV1 WILD-TYPE     88    156    129
D599V5, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETV1 MUTATED        8      5      1
  ETV1 WILD-TYPE    174    128     71
D599V6, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        1      3      6      5
  ETV1 WILD-TYPE    111     93     86    181
D599V7, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ETV1 MUTATED        3      2      3      0      3      1      3
  ETV1 WILD-TYPE     57     48     46     40     60    124     96
D599V8, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        7      3      0      4
  ETV1 WILD-TYPE    123     75     68    192
D599V9, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ETV1 MUTATED        0      4      2      1      4      1      2      0      0
  ETV1 WILD-TYPE     40     58     26     79     65     47     41     28     74
D599V10, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        2      1      0      3
  ETV1 WILD-TYPE     31     30     27     16
D599V11, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        4      0      1      1
  ETV1 WILD-TYPE     50     10     23     21
D599V12, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(600) Variable = ACVR2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        3      1      0      2
  ACVR2A WILD-TYPE     43     57     64     41
D600V1, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR2A MUTATED        2      3      1
  ACVR2A WILD-TYPE     49     80     76
D600V2, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED       13      3      1      1
  ACVR2A WILD-TYPE    165    180    100     19
D600V3, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1             13              165
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR2A MUTATED        3      0      8
  ACVR2A WILD-TYPE     84     80     92
D600V4, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR2A MUTATED        1     10      5
  ACVR2A WILD-TYPE     88    150    133
D600V5, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              1               88
  CLUS_2             10              150
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR2A MUTATED        3      9      4
  ACVR2A WILD-TYPE    179    124     68
D600V6, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              3              179
  CLUS_2              9              124
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        1      6      4      7
  ACVR2A WILD-TYPE    111     90     88    179
D600V7, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACVR2A MUTATED        2      2      5      0      2      2      5
  ACVR2A WILD-TYPE     58     48     44     40     61    123     94
D600V8, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        6      3      1      8
  ACVR2A WILD-TYPE    124     75     67    188
D600V9, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACVR2A MUTATED        3      2      2      1      6      1      1      0
  ACVR2A WILD-TYPE     37     60     26     79     63     47     42     28
                  vv
clus               CLUS_9
  ACVR2A MUTATED        2
  ACVR2A WILD-TYPE     72
D600V10, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        2      0      0      3
  ACVR2A WILD-TYPE     31     31     27     16
D600V11, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR2A MUTATED        3      0      2      0
  ACVR2A WILD-TYPE     51     10     22     22
D600V12, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(601) Variable = RNF20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF20 MUTATED        2      0      1      3
  RNF20 WILD-TYPE     44     58     63     40
D601V1, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF20 MUTATED        2      1      3
  RNF20 WILD-TYPE     49     82     74
D601V2, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF20 MUTATED       16      4      1      0
  RNF20 WILD-TYPE    162    179    100     20
D601V3, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF20 MUTATED        6      1      8
  RNF20 WILD-TYPE     81     79     92
D601V4, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF20 MUTATED        0      8      8
  RNF20 WILD-TYPE     89    152    130
D601V5, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF20 MUTATED        7      7      2
  RNF20 WILD-TYPE    175    126     70
D601V6, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF20 MUTATED        2      7      8      4
  RNF20 WILD-TYPE    110     89     84    182
D601V7, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             8              84
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF20 MUTATED        4      3      7      1      1      0      5
  RNF20 WILD-TYPE     56     47     42     39     62    125     94
D601V8, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF20 MUTATED        8      4      1      7
  RNF20 WILD-TYPE    122     74     67    189
D601V9, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF20 MUTATED        1      5      0      4      5      0      4      0
  RNF20 WILD-TYPE     39     57     28     76     64     48     39     28
                 vv
clus              CLUS_9
  RNF20 MUTATED        1
  RNF20 WILD-TYPE     73
D601V10, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF20 MUTATED        3      1      0      2
  RNF20 WILD-TYPE     30     30     27     17
D601V11, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF20 MUTATED        5      0      1      0
  RNF20 WILD-TYPE     49     10     23     22
D601V12, multiclass
        clus
vv       RNF20 MUTATED RNF20 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(602) Variable = ATG2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        2      0      1      5
  ATG2B WILD-TYPE     44     58     63     38
D602V1, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG2B MUTATED        3      2      3
  ATG2B WILD-TYPE     48     81     74
D602V2, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED       14      2      1      1
  ATG2B WILD-TYPE    164    181    100     19
D602V3, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1            14             164
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG2B MUTATED        3      1      6
  ATG2B WILD-TYPE     84     79     94
D602V4, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG2B MUTATED        3      5      8
  ATG2B WILD-TYPE     86    155    130
D602V5, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG2B MUTATED        8      6      2
  ATG2B WILD-TYPE    174    127     70
D602V6, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        1      7      3      7
  ATG2B WILD-TYPE    111     89     89    179
D602V7, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATG2B MUTATED        2      1      6      1      1      2      5
  ATG2B WILD-TYPE     58     49     43     39     62    123     94
D602V8, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        4      2      3      8
  ATG2B WILD-TYPE    126     76     65    188
D602V9, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             3              65
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATG2B MUTATED        0      3      1      2      6      1      3      0
  ATG2B WILD-TYPE     40     59     27     78     63     47     40     28
                 vv
clus              CLUS_9
  ATG2B MUTATED        1
  ATG2B WILD-TYPE     73
D602V10, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        0      0      1      2
  ATG2B WILD-TYPE     33     31     26     17
D602V11, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG2B MUTATED        2      0      1      0
  ATG2B WILD-TYPE     52     10     23     22
D602V12, multiclass
        clus
vv       ATG2B MUTATED ATG2B WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(603) Variable = FRY MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRY MUTATED        5      0      0      5
  FRY WILD-TYPE     41     58     64     38
D603V1, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           5            41
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           5            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FRY MUTATED        7      1      2
  FRY WILD-TYPE     44     82     75
D603V2, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           7            44
  CLUS_2           1            82
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRY MUTATED       31      5      3      1
  FRY WILD-TYPE    147    178     98     19
D603V3, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1          31           147
  CLUS_2           5           178
  CLUS_3           3            98
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FRY MUTATED        8      1     19
  FRY WILD-TYPE     79     79     81
D603V4, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           8            79
  CLUS_2           1            79
  CLUS_3          19            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FRY MUTATED        7     14     15
  FRY WILD-TYPE     82    146    123
D603V5, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           7            82
  CLUS_2          14           146
  CLUS_3          15           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FRY MUTATED       18     13      5
  FRY WILD-TYPE    164    120     67
D603V6, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1          18           164
  CLUS_2          13           120
  CLUS_3           5            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRY MUTATED        3     15     12     11
  FRY WILD-TYPE    109     81     80    175
D603V7, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           3           109
  CLUS_2          15            81
  CLUS_3          12            80
  CLUS_4          11           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FRY MUTATED        4      6     14      0      4      0     13
  FRY WILD-TYPE     56     44     35     40     59    125     86
D603V8, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           4            56
  CLUS_2           6            44
  CLUS_3          14            35
  CLUS_4           0            40
  CLUS_5           4            59
  CLUS_6           0           125
  CLUS_7          13            86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRY MUTATED       15      8      1     16
  FRY WILD-TYPE    115     70     67    180
D603V9, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1          15           115
  CLUS_2           8            70
  CLUS_3           1            67
  CLUS_4          16           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FRY MUTATED        6      7      3      3     12      1      2      4      2
  FRY WILD-TYPE     34     55     25     77     57     47     41     24     72
D603V10, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           6            34
  CLUS_2           7            55
  CLUS_3           3            25
  CLUS_4           3            77
  CLUS_5          12            57
  CLUS_6           1            47
  CLUS_7           2            41
  CLUS_8           4            24
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRY MUTATED        2      1      0      5
  FRY WILD-TYPE     31     30     27     14
D603V11, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           5            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRY MUTATED        6      0      2      0
  FRY WILD-TYPE     48     10     22     22
D603V12, multiclass
        clus
vv       FRY MUTATED FRY WILD-TYPE
  CLUS_1           6            48
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(604) Variable = SCN2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN2A MUTATED        6      2      0      4
  SCN2A WILD-TYPE     40     56     64     39
D604V1, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             6              40
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN2A MUTATED        8      2      2
  SCN2A WILD-TYPE     43     81     75
D604V2, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN2A MUTATED       30     11      8      0
  SCN2A WILD-TYPE    148    172     93     20
D604V3, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1            30             148
  CLUS_2            11             172
  CLUS_3             8              93
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN2A MUTATED       10     10     15
  SCN2A WILD-TYPE     77     70     85
D604V4, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1            10              77
  CLUS_2            10              70
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN2A MUTATED        8     15     17
  SCN2A WILD-TYPE     81    145    121
D604V5, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             8              81
  CLUS_2            15             145
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN2A MUTATED       23     11      6
  SCN2A WILD-TYPE    159    122     66
D604V6, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1            23             159
  CLUS_2            11             122
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN2A MUTATED       13     12     12     13
  SCN2A WILD-TYPE     99     84     80    173
D604V7, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1            13              99
  CLUS_2            12              84
  CLUS_3            12              80
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCN2A MUTATED        9      6     11      5      5      3     11
  SCN2A WILD-TYPE     51     44     38     35     58    122     88
D604V8, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             9              51
  CLUS_2             6              44
  CLUS_3            11              38
  CLUS_4             5              35
  CLUS_5             5              58
  CLUS_6             3             122
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN2A MUTATED       15     13      5     14
  SCN2A WILD-TYPE    115     65     63    182
D604V9, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1            15             115
  CLUS_2            13              65
  CLUS_3             5              63
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SCN2A MUTATED        5      8      3      4     11      7      4      3
  SCN2A WILD-TYPE     35     54     25     76     58     41     39     25
                 vv
clus              CLUS_9
  SCN2A MUTATED        2
  SCN2A WILD-TYPE     72
D604V10, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             5              35
  CLUS_2             8              54
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5            11              58
  CLUS_6             7              41
  CLUS_7             4              39
  CLUS_8             3              25
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN2A MUTATED        2      4      2      3
  SCN2A WILD-TYPE     31     27     25     16
D604V11, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             2              31
  CLUS_2             4              27
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN2A MUTATED        7      1      2      1
  SCN2A WILD-TYPE     47      9     22     21
D604V12, multiclass
        clus
vv       SCN2A MUTATED SCN2A WILD-TYPE
  CLUS_1             7              47
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(605) Variable = ALK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALK MUTATED        6      2      1      4
  ALK WILD-TYPE     40     56     63     39
D605V1, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           6            40
  CLUS_2           2            56
  CLUS_3           1            63
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ALK MUTATED        8      2      3
  ALK WILD-TYPE     43     81     74
D605V2, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           8            43
  CLUS_2           2            81
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALK MUTATED       23     16      1      0
  ALK WILD-TYPE    155    167    100     20
D605V3, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1          23           155
  CLUS_2          16           167
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ALK MUTATED        9      8      9
  ALK WILD-TYPE     78     72     91
D605V4, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           9            78
  CLUS_2           8            72
  CLUS_3           9            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ALK MUTATED        5     12     18
  ALK WILD-TYPE     84    148    120
D605V5, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           5            84
  CLUS_2          12           148
  CLUS_3          18           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ALK MUTATED       22      8      5
  ALK WILD-TYPE    160    125     67
D605V6, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1          22           160
  CLUS_2           8           125
  CLUS_3           5            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALK MUTATED        8      5     11     16
  ALK WILD-TYPE    104     91     81    170
D605V7, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           8           104
  CLUS_2           5            91
  CLUS_3          11            81
  CLUS_4          16           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALK MUTATED        7      6      5      3      4      4     11
  ALK WILD-TYPE     53     44     44     37     59    121     88
D605V8, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           7            53
  CLUS_2           6            44
  CLUS_3           5            44
  CLUS_4           3            37
  CLUS_5           4            59
  CLUS_6           4           121
  CLUS_7          11            88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALK MUTATED       14      6      5     14
  ALK WILD-TYPE    116     72     63    182
D605V9, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1          14           116
  CLUS_2           6            72
  CLUS_3           5            63
  CLUS_4          14           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ALK MUTATED        5      6      3      7     10      1      4      1      2
  ALK WILD-TYPE     35     56     25     73     59     47     39     27     72
D605V10, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           5            35
  CLUS_2           6            56
  CLUS_3           3            25
  CLUS_4           7            73
  CLUS_5          10            59
  CLUS_6           1            47
  CLUS_7           4            39
  CLUS_8           1            27
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALK MUTATED        2      1      1      2
  ALK WILD-TYPE     31     30     26     17
D605V11, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            30
  CLUS_3           1            26
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALK MUTATED        2      0      2      2
  ALK WILD-TYPE     52     10     22     20
D605V12, multiclass
        clus
vv       ALK MUTATED ALK WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           2            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(606) Variable = SP4 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        1      0      0      2
  SP4 WILD-TYPE     45     58     64     41
D606V1, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        2      1      0
  SP4 WILD-TYPE     49     82     77
D606V2, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        7      1      3      1
  SP4 WILD-TYPE    171    182     98     19
D606V3, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           7           171
  CLUS_2           1           182
  CLUS_3           3            98
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        3      2      4
  SP4 WILD-TYPE     84     78     96
D606V4, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           3            84
  CLUS_2           2            78
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        1      4      4
  SP4 WILD-TYPE     88    156    134
D606V5, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           1            88
  CLUS_2           4           156
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        5      4      0
  SP4 WILD-TYPE    177    129     72
D606V6, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           5           177
  CLUS_2           4           129
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        2      4      3      3
  SP4 WILD-TYPE    110     92     89    183
D606V7, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           2           110
  CLUS_2           4            92
  CLUS_3           3            89
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP4 MUTATED        2      2      3      2      0      0      3
  SP4 WILD-TYPE     58     48     46     38     63    125     96
D606V8, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           2            58
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           2            38
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        7      1      1      2
  SP4 WILD-TYPE    123     77     67    194
D606V9, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           7           123
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SP4 MUTATED        3      1      2      2      2      0      1      0      0
  SP4 WILD-TYPE     37     61     26     78     67     48     42     28     74
D606V10, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           3            37
  CLUS_2           1            61
  CLUS_3           2            26
  CLUS_4           2            78
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        1      1      0      1
  SP4 WILD-TYPE     32     30     27     18
D606V11, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        2      0      1      0
  SP4 WILD-TYPE     52     10     23     22
D606V12, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(607) Variable = IQSEC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQSEC2 MUTATED        2      1      0      1
  IQSEC2 WILD-TYPE     44     57     64     42
D607V1, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQSEC2 MUTATED        3      1      0
  IQSEC2 WILD-TYPE     48     82     77
D607V2, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQSEC2 MUTATED       13      3      1      0
  IQSEC2 WILD-TYPE    165    180    100     20
D607V3, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQSEC2 MUTATED        3      0     10
  IQSEC2 WILD-TYPE     84     80     90
D607V4, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQSEC2 MUTATED        1      6      6
  IQSEC2 WILD-TYPE     88    154    132
D607V5, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQSEC2 MUTATED        4      7      2
  IQSEC2 WILD-TYPE    178    126     70
D607V6, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQSEC2 MUTATED        0     12      1      4
  IQSEC2 WILD-TYPE    112     84     91    182
D607V7, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2             12               84
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IQSEC2 MUTATED        0      3      9      0      0      0      5
  IQSEC2 WILD-TYPE     60     47     40     40     63    125     94
D607V8, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              3               47
  CLUS_3              9               40
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQSEC2 MUTATED       10      0      0      7
  IQSEC2 WILD-TYPE    120     78     68    189
D607V9, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IQSEC2 MUTATED        2      1      0      1     11      0      1      1
  IQSEC2 WILD-TYPE     38     61     28     79     58     48     42     27
                  vv
clus               CLUS_9
  IQSEC2 MUTATED        0
  IQSEC2 WILD-TYPE     74
D607V10, multiclass
        clus
vv       IQSEC2 MUTATED IQSEC2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5             11               58
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQSEC2 MUTATED        0      0      0      1
  IQSEC2 WILD-TYPE     33     31     27     18
D607V11, multiclass
[1] "Remove cluster labels:" "IQSEC2 MUTATED"        
clus
  IQSEC2 MUTATED IQSEC2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-G5-6641 
"IQSEC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQSEC2 MUTATED        0      0      1      0
  IQSEC2 WILD-TYPE     54     10     23     22
D607V12, multiclass
[1] "Remove cluster labels:" "IQSEC2 MUTATED"        
clus
  IQSEC2 MUTATED IQSEC2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" "IQSEC2 WILD-TYPE" 
      TCGA-G5-6641 
"IQSEC2 WILD-TYPE" 

Clustering(608) Variable = PPP1R12B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12B MUTATED        1      1      1      3
  PPP1R12B WILD-TYPE     45     57     63     40
D608V1, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 57
  CLUS_3                1                 63
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12B MUTATED        2      2      2
  PPP1R12B WILD-TYPE     49     81     75
D608V2, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12B MUTATED        8      4      3      0
  PPP1R12B WILD-TYPE    170    179     98     20
D608V3, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                8                170
  CLUS_2                4                179
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12B MUTATED        6      1      2
  PPP1R12B WILD-TYPE     81     79     98
D608V4, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                6                 81
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12B MUTATED        3      3      6
  PPP1R12B WILD-TYPE     86    157    132
D608V5, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                3                157
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12B MUTATED        6      3      3
  PPP1R12B WILD-TYPE    176    130     69
D608V6, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                6                176
  CLUS_2                3                130
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12B MUTATED        2      3      4      6
  PPP1R12B WILD-TYPE    110     93     88    180
D608V7, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                4                 88
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP1R12B MUTATED        2      4      1      0      3      2      3
  PPP1R12B WILD-TYPE     58     46     48     40     60    123     96
D608V8, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                4                 46
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                3                 60
  CLUS_6                2                123
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12B MUTATED        5      1      2      6
  PPP1R12B WILD-TYPE    125     77     66    190
D608V9, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                5                125
  CLUS_2                1                 77
  CLUS_3                2                 66
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPP1R12B MUTATED        2      3      1      2      2      0      1      1
  PPP1R12B WILD-TYPE     38     59     27     78     67     48     42     27
                    vv
clus                 CLUS_9
  PPP1R12B MUTATED        2
  PPP1R12B WILD-TYPE     72
D608V10, multiclass
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12B MUTATED        0      0      0      1
  PPP1R12B WILD-TYPE     33     31     27     18
D608V11, multiclass
[1] "Remove cluster labels:" "PPP1R12B MUTATED"      
clus
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-G5-6641 
"PPP1R12B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12B MUTATED        1      0      0      0
  PPP1R12B WILD-TYPE     53     10     24     22
D608V12, multiclass
[1] "Remove cluster labels:" "PPP1R12B MUTATED"      
clus
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-G5-6641 
"PPP1R12B WILD-TYPE" 

Clustering(609) Variable = WWTR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        0      1      0      1
  WWTR1 WILD-TYPE     46     57     64     42
D609V1, multiclass
[1] "Remove cluster labels:" "WWTR1 MUTATED"         
clus
  WWTR1 MUTATED WWTR1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3542 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3556 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AY-4071 
"WWTR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WWTR1 MUTATED        1      1      0
  WWTR1 WILD-TYPE     50     82     77
D609V2, multiclass
[1] "Remove cluster labels:" "WWTR1 MUTATED"         
clus
  WWTR1 MUTATED WWTR1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3542 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3556 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-AY-4071 
"WWTR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        5      1      1      0
  WWTR1 WILD-TYPE    173    182    100     20
D609V3, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WWTR1 MUTATED        1      0      4
  WWTR1 WILD-TYPE     86     80     96
D609V4, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WWTR1 MUTATED        0      3      3
  WWTR1 WILD-TYPE     89    157    135
D609V5, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WWTR1 MUTATED        5      1      0
  WWTR1 WILD-TYPE    177    132     72
D609V6, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        1      2      3      1
  WWTR1 WILD-TYPE    111     94     89    185
D609V7, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WWTR1 MUTATED        0      1      3      0      1      1      1
  WWTR1 WILD-TYPE     60     49     46     40     62    124     98
D609V8, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        2      1      0      4
  WWTR1 WILD-TYPE    128     77     68    192
D609V9, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WWTR1 MUTATED        1      2      0      2      2      0      0      0
  WWTR1 WILD-TYPE     39     60     28     78     67     48     43     28
                 vv
clus              CLUS_9
  WWTR1 MUTATED        0
  WWTR1 WILD-TYPE     74
D609V10, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        0      0      0      3
  WWTR1 WILD-TYPE     33     31     27     16
D609V11, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWTR1 MUTATED        2      0      1      0
  WWTR1 WILD-TYPE     52     10     23     22
D609V12, multiclass
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(610) Variable = ABLIM3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM3 MUTATED        5      0      0      1
  ABLIM3 WILD-TYPE     41     58     64     42
D610V1, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM3 MUTATED        5      1      0
  ABLIM3 WILD-TYPE     46     82     77
D610V2, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM3 MUTATED       13      5      0      0
  ABLIM3 WILD-TYPE    165    178    101     20
D610V3, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              5              178
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM3 MUTATED        4      3      5
  ABLIM3 WILD-TYPE     83     77     95
D610V4, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM3 MUTATED        2      3      8
  ABLIM3 WILD-TYPE     87    157    130
D610V5, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM3 MUTATED        6      4      3
  ABLIM3 WILD-TYPE    176    129     69
D610V6, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM3 MUTATED        5      3      5      5
  ABLIM3 WILD-TYPE    107     93     87    181
D610V7, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              3               93
  CLUS_3              5               87
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABLIM3 MUTATED        1      3      4      3      2      1      4
  ABLIM3 WILD-TYPE     59     47     45     37     61    124     95
D610V8, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM3 MUTATED        7      3      2      6
  ABLIM3 WILD-TYPE    123     75     66    190
D610V9, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABLIM3 MUTATED        3      5      0      2      5      0      2      1
  ABLIM3 WILD-TYPE     37     57     28     78     64     48     41     27
                  vv
clus               CLUS_9
  ABLIM3 MUTATED        0
  ABLIM3 WILD-TYPE     74
D610V10, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM3 MUTATED        1      1      1      2
  ABLIM3 WILD-TYPE     32     30     26     17
D610V11, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM3 MUTATED        1      1      2      1
  ABLIM3 WILD-TYPE     53      9     22     21
D610V12, multiclass
        clus
vv       ABLIM3 MUTATED ABLIM3 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(611) Variable = SNTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNTN MUTATED        0      0      0      0
  SNTN WILD-TYPE     46     58     64     43
D611V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNTN MUTATED        0      0      0
  SNTN WILD-TYPE     51     83     77
D611V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNTN MUTATED        3      2      1      1
  SNTN WILD-TYPE    175    181    100     19
D611V3, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNTN MUTATED        0      2      5
  SNTN WILD-TYPE     87     78     95
D611V4, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            0             87
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNTN MUTATED        1      6      0
  SNTN WILD-TYPE     88    154    138
D611V5, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNTN MUTATED        2      3      2
  SNTN WILD-TYPE    180    130     70
D611V6, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            2            180
  CLUS_2            3            130
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNTN MUTATED        3      1      3      0
  SNTN WILD-TYPE    109     95     89    186
D611V7, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNTN MUTATED        3      2      1      0      1      0      0
  SNTN WILD-TYPE     57     48     48     40     62    125     99
D611V8, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNTN MUTATED        3      2      1      1
  SNTN WILD-TYPE    127     76     67    195
D611V9, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SNTN MUTATED        0      0      1      2      1      1      2      0      0
  SNTN WILD-TYPE     40     62     27     78     68     47     41     28     74
D611V10, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNTN MUTATED        2      0      0      1
  SNTN WILD-TYPE     31     31     27     18
D611V11, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNTN MUTATED        1      0      1      1
  SNTN WILD-TYPE     53     10     23     21
D611V12, multiclass
        clus
vv       SNTN MUTATED SNTN WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(612) Variable = DSG4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG4 MUTATED        2      0      0      5
  DSG4 WILD-TYPE     44     58     64     38
D612V1, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG4 MUTATED        5      0      2
  DSG4 WILD-TYPE     46     83     75
D612V2, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG4 MUTATED       20      1      2      1
  DSG4 WILD-TYPE    158    182     99     19
D612V3, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1           20            158
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG4 MUTATED        7      3      7
  DSG4 WILD-TYPE     80     77     93
D612V4, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            3             77
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG4 MUTATED        5      5     10
  DSG4 WILD-TYPE     84    155    128
D612V5, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            5            155
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSG4 MUTATED       11      8      1
  DSG4 WILD-TYPE    171    125     71
D612V6, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            8            125
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG4 MUTATED        5      5      6      8
  DSG4 WILD-TYPE    107     91     86    178
D612V7, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            5             91
  CLUS_3            6             86
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DSG4 MUTATED        4      4      6      3      0      0      7
  DSG4 WILD-TYPE     56     46     43     37     63    125     92
D612V8, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            4             46
  CLUS_3            6             43
  CLUS_4            3             37
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG4 MUTATED       10      3      1     10
  DSG4 WILD-TYPE    120     75     67    186
D612V9, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DSG4 MUTATED        5      3      2      1      7      4      0      1      1
  DSG4 WILD-TYPE     35     59     26     79     62     44     43     27     73
D612V10, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            7             62
  CLUS_6            4             44
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG4 MUTATED        4      0      0      3
  DSG4 WILD-TYPE     29     31     27     16
D612V11, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSG4 MUTATED        4      0      0      3
  DSG4 WILD-TYPE     50     10     24     19
D612V12, multiclass
        clus
vv       DSG4 MUTATED DSG4 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(613) Variable = PCDH12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH12 MUTATED        2      1      0      5
  PCDH12 WILD-TYPE     44     57     64     38
D613V1, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH12 MUTATED        4      2      2
  PCDH12 WILD-TYPE     47     81     75
D613V2, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH12 MUTATED       16      4      0      0
  PCDH12 WILD-TYPE    162    179    101     20
D613V3, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1             16              162
  CLUS_2              4              179
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH12 MUTATED        4      2      6
  PCDH12 WILD-TYPE     83     78     94
D613V4, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH12 MUTATED        5      5      6
  PCDH12 WILD-TYPE     84    155    132
D613V5, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH12 MUTATED        4      7      5
  PCDH12 WILD-TYPE    178    126     67
D613V6, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              7              126
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH12 MUTATED        2      6      4      8
  PCDH12 WILD-TYPE    110     90     88    178
D613V7, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDH12 MUTATED        2      0      8      1      2      2      5
  PCDH12 WILD-TYPE     58     50     41     39     61    123     94
D613V8, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH12 MUTATED        7      4      0      9
  PCDH12 WILD-TYPE    123     74     68    187
D613V9, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDH12 MUTATED        2      4      1      1      7      1      0      2
  PCDH12 WILD-TYPE     38     58     27     79     62     47     43     26
                  vv
clus               CLUS_9
  PCDH12 MUTATED        2
  PCDH12 WILD-TYPE     72
D613V10, multiclass
        clus
vv       PCDH12 MUTATED PCDH12 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH12 MUTATED        1      0      0      1
  PCDH12 WILD-TYPE     32     31     27     18
D613V11, multiclass
[1] "Remove cluster labels:" "PCDH12 MUTATED"        
clus
  PCDH12 MUTATED PCDH12 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH12 MUTATED        1      0      1      0
  PCDH12 WILD-TYPE     53     10     23     22
D613V12, multiclass
[1] "Remove cluster labels:" "PCDH12 MUTATED"        
clus
  PCDH12 MUTATED PCDH12 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" "PCDH12 WILD-TYPE" 

Clustering(614) Variable = EAPP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAPP MUTATED        0      1      0      1
  EAPP WILD-TYPE     46     57     64     42
D614V1, multiclass
[1] "Remove cluster labels:" "EAPP MUTATED"          
clus
  EAPP MUTATED EAPP WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4008 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AY-4071 
"EAPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAPP MUTATED        0      1      1
  EAPP WILD-TYPE     51     82     76
D614V2, multiclass
[1] "Remove cluster labels:" "EAPP MUTATED"          
clus
  EAPP MUTATED EAPP WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4008 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" "EAPP WILD-TYPE" 
    TCGA-AY-4071 
"EAPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAPP MUTATED        2      4      0      0
  EAPP WILD-TYPE    176    179    101     20
D614V3, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            2            176
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAPP MUTATED        0      1      2
  EAPP WILD-TYPE     87     79     98
D614V4, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAPP MUTATED        1      3      1
  EAPP WILD-TYPE     88    157    137
D614V5, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAPP MUTATED        1      3      1
  EAPP WILD-TYPE    181    130     71
D614V6, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAPP MUTATED        1      3      0      2
  EAPP WILD-TYPE    111     93     92    184
D614V7, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EAPP MUTATED        1      3      0      0      0      1      1
  EAPP WILD-TYPE     59     47     49     40     63    124     98
D614V8, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAPP MUTATED        3      0      0      3
  EAPP WILD-TYPE    127     78     68    193
D614V9, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EAPP MUTATED        2      0      1      0      2      0      0      0      1
  EAPP WILD-TYPE     38     62     27     80     67     48     43     28     73
D614V10, multiclass
        clus
vv       EAPP MUTATED EAPP WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAPP MUTATED        0      0      0      0
  EAPP WILD-TYPE     33     31     27     19
D614V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAPP MUTATED        0      0      0      0
  EAPP WILD-TYPE     54     10     24     22
D614V12, multiclass

Clustering(615) Variable = SLC7A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        1      0      0      1
  SLC7A10 WILD-TYPE     45     58     64     42
D615V1, multiclass
[1] "Remove cluster labels:" "SLC7A10 MUTATED"       
clus
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3667 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AY-4071 
"SLC7A10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        1      0      1
  SLC7A10 WILD-TYPE     50     83     76
D615V2, multiclass
[1] "Remove cluster labels:" "SLC7A10 MUTATED"       
clus
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3667 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" "SLC7A10 WILD-TYPE" 
       TCGA-AY-4071 
"SLC7A10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        8      0      0      0
  SLC7A10 WILD-TYPE    170    183    101     20
D615V3, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        3      0      3
  SLC7A10 WILD-TYPE     84     80     97
D615V4, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        1      4      3
  SLC7A10 WILD-TYPE     88    156    135
D615V5, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        3      3      2
  SLC7A10 WILD-TYPE    179    130     70
D615V6, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        0      2      4      2
  SLC7A10 WILD-TYPE    112     94     88    184
D615V7, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC7A10 MUTATED        0      0      6      0      0      0      2
  SLC7A10 WILD-TYPE     60     50     43     40     63    125     97
D615V8, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        3      2      0      3
  SLC7A10 WILD-TYPE    127     76     68    193
D615V9, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC7A10 MUTATED        0      3      0      0      5      0      0      0
  SLC7A10 WILD-TYPE     40     59     28     80     64     48     43     28
                   vv
clus                CLUS_9
  SLC7A10 MUTATED        0
  SLC7A10 WILD-TYPE     74
D615V10, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        1      0      0      2
  SLC7A10 WILD-TYPE     32     31     27     17
D615V11, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        1      0      2      0
  SLC7A10 WILD-TYPE     53     10     22     22
D615V12, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(616) Variable = ZNF711 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        1      0      0      1
  ZNF711 WILD-TYPE     45     58     64     42
D616V1, multiclass
[1] "Remove cluster labels:" "ZNF711 MUTATED"        
clus
  ZNF711 MUTATED ZNF711 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF711 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED        2      0      0
  ZNF711 WILD-TYPE     49     83     77
D616V2, multiclass
[1] "Remove cluster labels:" "ZNF711 MUTATED"        
clus
  ZNF711 MUTATED ZNF711 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF711 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        6      3      1      1
  ZNF711 WILD-TYPE    172    180    100     19
D616V3, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED        4      1      4
  ZNF711 WILD-TYPE     83     79     96
D616V4, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED        3      3      5
  ZNF711 WILD-TYPE     86    157    133
D616V5, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED        8      1      2
  ZNF711 WILD-TYPE    174    132     70
D616V6, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        2      2      6      1
  ZNF711 WILD-TYPE    110     94     86    185
D616V7, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              6               86
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF711 MUTATED        1      0      4      1      3      0      2
  ZNF711 WILD-TYPE     59     50     45     39     60    125     97
D616V8, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        5      3      0      2
  ZNF711 WILD-TYPE    125     75     68    194
D616V9, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF711 MUTATED        1      3      1      2      2      0      0      1
  ZNF711 WILD-TYPE     39     59     27     78     67     48     43     27
                  vv
clus               CLUS_9
  ZNF711 MUTATED        0
  ZNF711 WILD-TYPE     74
D616V10, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        0      1      0      2
  ZNF711 WILD-TYPE     33     30     27     17
D616V11, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        3      0      0      0
  ZNF711 WILD-TYPE     51     10     24     22
D616V12, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(617) Variable = REXO4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REXO4 MUTATED        1      0      0      1
  REXO4 WILD-TYPE     45     58     64     42
D617V1, multiclass
[1] "Remove cluster labels:" "REXO4 MUTATED"         
clus
  REXO4 MUTATED REXO4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AY-4071 
"REXO4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  REXO4 MUTATED        2      0      0
  REXO4 WILD-TYPE     49     83     77
D617V2, multiclass
[1] "Remove cluster labels:" "REXO4 MUTATED"         
clus
  REXO4 MUTATED REXO4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AY-4071 
"REXO4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REXO4 MUTATED        5      0      0      0
  REXO4 WILD-TYPE    173    183    101     20
D617V3, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  REXO4 MUTATED        0      0      3
  REXO4 WILD-TYPE     87     80     97
D617V4, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  REXO4 MUTATED        3      2      0
  REXO4 WILD-TYPE     86    158    138
D617V5, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             0             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  REXO4 MUTATED        3      1      1
  REXO4 WILD-TYPE    179    132     71
D617V6, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REXO4 MUTATED        0      2      1      2
  REXO4 WILD-TYPE    112     94     91    184
D617V7, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  REXO4 MUTATED        0      1      2      0      0      0      2
  REXO4 WILD-TYPE     60     49     47     40     63    125     97
D617V8, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REXO4 MUTATED        3      0      0      2
  REXO4 WILD-TYPE    127     78     68    194
D617V9, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  REXO4 MUTATED        1      1      0      0      3      0      0      0
  REXO4 WILD-TYPE     39     61     28     80     66     48     43     28
                 vv
clus              CLUS_9
  REXO4 MUTATED        0
  REXO4 WILD-TYPE     74
D617V10, multiclass
        clus
vv       REXO4 MUTATED REXO4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REXO4 MUTATED        0      0      0      1
  REXO4 WILD-TYPE     33     31     27     18
D617V11, multiclass
[1] "Remove cluster labels:" "REXO4 MUTATED"         
clus
  REXO4 MUTATED REXO4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-G5-6641 
"REXO4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REXO4 MUTATED        1      0      0      0
  REXO4 WILD-TYPE     53     10     24     22
D617V12, multiclass
[1] "Remove cluster labels:" "REXO4 MUTATED"         
clus
  REXO4 MUTATED REXO4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" "REXO4 WILD-TYPE" 
     TCGA-G5-6641 
"REXO4 WILD-TYPE" 

Clustering(618) Variable = ABCB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        2      0      0      6
  ABCB4 WILD-TYPE     44     58     64     37
D618V1, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED        3      1      4
  ABCB4 WILD-TYPE     48     82     73
D618V2, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED       21      3      1      1
  ABCB4 WILD-TYPE    157    180    100     19
D618V3, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED        8      3      7
  ABCB4 WILD-TYPE     79     77     93
D618V4, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED        2     11     11
  ABCB4 WILD-TYPE     87    149    127
D618V5, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            11             149
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED       11     11      2
  ABCB4 WILD-TYPE    171    122     70
D618V6, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1            11             171
  CLUS_2            11             122
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        3      7      8      9
  ABCB4 WILD-TYPE    109     89     84    177
D618V7, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             7              89
  CLUS_3             8              84
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCB4 MUTATED        3      3      8      0      2      2      9
  ABCB4 WILD-TYPE     57     47     41     40     61    123     90
D618V8, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        8      5      1     11
  ABCB4 WILD-TYPE    122     73     67    185
D618V9, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABCB4 MUTATED        2      6      2      4      8      0      1      0
  ABCB4 WILD-TYPE     38     56     26     76     61     48     42     28
                 vv
clus              CLUS_9
  ABCB4 MUTATED        2
  ABCB4 WILD-TYPE     72
D618V10, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        1      0      1      4
  ABCB4 WILD-TYPE     32     31     26     15
D618V11, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        3      1      2      0
  ABCB4 WILD-TYPE     51      9     22     22
D618V12, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(619) Variable = FAAH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH2 MUTATED        2      1      1      1
  FAAH2 WILD-TYPE     44     57     63     42
D619V1, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAAH2 MUTATED        3      2      0
  FAAH2 WILD-TYPE     48     81     77
D619V2, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH2 MUTATED        4      8      1      0
  FAAH2 WILD-TYPE    174    175    100     20
D619V3, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             8             175
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAAH2 MUTATED        1      5      3
  FAAH2 WILD-TYPE     86     75     97
D619V4, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             5              75
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAAH2 MUTATED        1      9      2
  FAAH2 WILD-TYPE     88    151    136
D619V5, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAAH2 MUTATED        3      8      1
  FAAH2 WILD-TYPE    179    125     71
D619V6, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             8             125
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH2 MUTATED        4      5      1      4
  FAAH2 WILD-TYPE    108     91     91    182
D619V7, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              91
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAAH2 MUTATED        2      3      0      2      2      2      3
  FAAH2 WILD-TYPE     58     47     49     38     61    123     96
D619V8, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             0              49
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH2 MUTATED        6      0      3      3
  FAAH2 WILD-TYPE    124     78     65    193
D619V9, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             3              65
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAAH2 MUTATED        2      1      0      1      3      1      4      0
  FAAH2 WILD-TYPE     38     61     28     79     66     47     39     28
                 vv
clus              CLUS_9
  FAAH2 MUTATED        0
  FAAH2 WILD-TYPE     74
D619V10, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH2 MUTATED        1      1      1      0
  FAAH2 WILD-TYPE     32     30     26     19
D619V11, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH2 MUTATED        1      0      1      1
  FAAH2 WILD-TYPE     53     10     23     21
D619V12, multiclass
        clus
vv       FAAH2 MUTATED FAAH2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(620) Variable = RASAL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        3      0      2      3
  RASAL2 WILD-TYPE     43     58     62     40
D620V1, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        5      2      1
  RASAL2 WILD-TYPE     46     81     76
D620V2, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED       10      2      3      0
  RASAL2 WILD-TYPE    168    181     98     20
D620V3, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        3      2      3
  RASAL2 WILD-TYPE     84     78     97
D620V4, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        2      3      9
  RASAL2 WILD-TYPE     87    157    129
D620V5, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        9      1      4
  RASAL2 WILD-TYPE    173    132     68
D620V6, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              1              132
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        3      2      5      6
  RASAL2 WILD-TYPE    109     94     87    180
D620V7, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              5               87
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASAL2 MUTATED        2      2      3      0      1      2      6
  RASAL2 WILD-TYPE     58     48     46     40     62    123     93
D620V8, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        6      2      1      5
  RASAL2 WILD-TYPE    124     76     67    191
D620V9, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RASAL2 MUTATED        1      4      2      1      2      2      0      1
  RASAL2 WILD-TYPE     39     58     26     79     67     46     43     27
                  vv
clus               CLUS_9
  RASAL2 MUTATED        1
  RASAL2 WILD-TYPE     73
D620V10, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        0      0      0      2
  RASAL2 WILD-TYPE     33     31     27     17
D620V11, multiclass
[1] "Remove cluster labels:" "RASAL2 MUTATED"        
clus
  RASAL2 MUTATED RASAL2 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        2      0      0      0
  RASAL2 WILD-TYPE     52     10     24     22
D620V12, multiclass
[1] "Remove cluster labels:" "RASAL2 MUTATED"        
clus
  RASAL2 MUTATED RASAL2 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" "RASAL2 WILD-TYPE" 

Clustering(621) Variable = ATAD5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD5 MUTATED        3      0      0      5
  ATAD5 WILD-TYPE     43     58     64     38
D621V1, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD5 MUTATED        4      2      2
  ATAD5 WILD-TYPE     47     81     75
D621V2, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD5 MUTATED       19      2      4      0
  ATAD5 WILD-TYPE    159    181     97     20
D621V3, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             2             181
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD5 MUTATED        6      2      8
  ATAD5 WILD-TYPE     81     78     92
D621V4, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD5 MUTATED        3      7      9
  ATAD5 WILD-TYPE     86    153    129
D621V5, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD5 MUTATED        9      6      4
  ATAD5 WILD-TYPE    173    127     68
D621V6, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             6             127
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD5 MUTATED        2     10      5      8
  ATAD5 WILD-TYPE    110     86     87    178
D621V7, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2            10              86
  CLUS_3             5              87
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATAD5 MUTATED        1      2     11      2      2      1      6
  ATAD5 WILD-TYPE     59     48     38     38     61    124     93
D621V8, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3            11              38
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD5 MUTATED       10      3      2     10
  ATAD5 WILD-TYPE    120     75     66    186
D621V9, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATAD5 MUTATED        1      4      3      2     12      0      2      1
  ATAD5 WILD-TYPE     39     58     25     78     57     48     41     27
                 vv
clus              CLUS_9
  ATAD5 MUTATED        0
  ATAD5 WILD-TYPE     74
D621V10, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5            12              57
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD5 MUTATED        0      0      1      7
  ATAD5 WILD-TYPE     33     31     26     12
D621V11, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             7              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD5 MUTATED        4      0      4      0
  ATAD5 WILD-TYPE     50     10     20     22
D621V12, multiclass
        clus
vv       ATAD5 MUTATED ATAD5 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(622) Variable = ZNF14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF14 MUTATED        1      0      0      3
  ZNF14 WILD-TYPE     45     58     64     40
D622V1, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF14 MUTATED        1      2      1
  ZNF14 WILD-TYPE     50     81     76
D622V2, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF14 MUTATED        9      1      1      3
  ZNF14 WILD-TYPE    169    182    100     17
D622V3, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF14 MUTATED        4      1      4
  ZNF14 WILD-TYPE     83     79     96
D622V4, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF14 MUTATED        1      5      6
  ZNF14 WILD-TYPE     88    155    132
D622V5, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF14 MUTATED        6      4      2
  ZNF14 WILD-TYPE    176    129     70
D622V6, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF14 MUTATED        2      4      4      4
  ZNF14 WILD-TYPE    110     92     88    182
D622V7, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF14 MUTATED        1      3      2      1      4      1      2
  ZNF14 WILD-TYPE     59     47     47     39     59    124     97
D622V8, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF14 MUTATED        4      6      0      3
  ZNF14 WILD-TYPE    126     72     68    193
D622V9, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             6              72
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF14 MUTATED        5      2      2      1      1      2      0      0
  ZNF14 WILD-TYPE     35     60     26     79     68     46     43     28
                 vv
clus              CLUS_9
  ZNF14 MUTATED        0
  ZNF14 WILD-TYPE     74
D622V10, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF14 MUTATED        3      1      0      1
  ZNF14 WILD-TYPE     30     30     27     18
D622V11, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF14 MUTATED        4      0      0      1
  ZNF14 WILD-TYPE     50     10     24     21
D622V12, multiclass
        clus
vv       ZNF14 MUTATED ZNF14 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(623) Variable = NAP1L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        1      0      0      0
  NAP1L1 WILD-TYPE     45     58     64     43
D623V1, multiclass
[1] "Remove cluster labels:" "NAP1L1 MUTATED"        
clus
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        1      0      0
  NAP1L1 WILD-TYPE     50     83     77
D623V2, multiclass
[1] "Remove cluster labels:" "NAP1L1 MUTATED"        
clus
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        6      3      0      0
  NAP1L1 WILD-TYPE    172    180    101     20
D623V3, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        2      3      3
  NAP1L1 WILD-TYPE     85     77     97
D623V4, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        0      1      4
  NAP1L1 WILD-TYPE     89    159    134
D623V5, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L1 MUTATED        3      2      0
  NAP1L1 WILD-TYPE    179    131     72
D623V6, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        3      3      2      1
  NAP1L1 WILD-TYPE    109     93     90    185
D623V7, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L1 MUTATED        2      3      1      1      1      0      1
  NAP1L1 WILD-TYPE     58     47     48     39     62    125     98
D623V8, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        4      1      2      2
  NAP1L1 WILD-TYPE    126     77     66    194
D623V9, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NAP1L1 MUTATED        2      1      0      2      2      0      1      0
  NAP1L1 WILD-TYPE     38     61     28     78     67     48     42     28
                  vv
clus               CLUS_9
  NAP1L1 MUTATED        1
  NAP1L1 WILD-TYPE     73
D623V10, multiclass
        clus
vv       NAP1L1 MUTATED NAP1L1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        0      0      1      0
  NAP1L1 WILD-TYPE     33     31     26     19
D623V11, multiclass
[1] "Remove cluster labels:" "NAP1L1 MUTATED"        
clus
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G5-6641 
"NAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L1 MUTATED        0      0      1      0
  NAP1L1 WILD-TYPE     54     10     23     22
D623V12, multiclass
[1] "Remove cluster labels:" "NAP1L1 MUTATED"        
clus
  NAP1L1 MUTATED NAP1L1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" "NAP1L1 WILD-TYPE" 
      TCGA-G5-6641 
"NAP1L1 WILD-TYPE" 

Clustering(624) Variable = CHRM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM3 MUTATED        0      0      0      2
  CHRM3 WILD-TYPE     46     58     64     41
D624V1, multiclass
[1] "Remove cluster labels:" "CHRM3 MUTATED"         
clus
  CHRM3 MUTATED CHRM3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AY-4071 
"CHRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM3 MUTATED        2      0      0
  CHRM3 WILD-TYPE     49     83     77
D624V2, multiclass
[1] "Remove cluster labels:" "CHRM3 MUTATED"         
clus
  CHRM3 MUTATED CHRM3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" "CHRM3 WILD-TYPE" 
     TCGA-AY-4071 
"CHRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM3 MUTATED        7      2      5      1
  CHRM3 WILD-TYPE    171    181     96     19
D624V3, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM3 MUTATED        6      2      4
  CHRM3 WILD-TYPE     81     78     96
D624V4, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM3 MUTATED        3      5      6
  CHRM3 WILD-TYPE     86    155    132
D624V5, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM3 MUTATED        7      4      3
  CHRM3 WILD-TYPE    175    129     69
D624V6, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM3 MUTATED        3      3      6      3
  CHRM3 WILD-TYPE    109     93     86    183
D624V7, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHRM3 MUTATED        1      2      2      2      5      0      3
  CHRM3 WILD-TYPE     59     48     47     38     58    125     96
D624V8, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             5              58
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM3 MUTATED        3      7      1      3
  CHRM3 WILD-TYPE    127     71     67    193
D624V9, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             7              71
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHRM3 MUTATED        2      3      1      1      4      1      2      0
  CHRM3 WILD-TYPE     38     59     27     79     65     47     41     28
                 vv
clus              CLUS_9
  CHRM3 MUTATED        0
  CHRM3 WILD-TYPE     74
D624V10, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM3 MUTATED        1      2      1      2
  CHRM3 WILD-TYPE     32     29     26     17
D624V11, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM3 MUTATED        3      1      0      2
  CHRM3 WILD-TYPE     51      9     24     20
D624V12, multiclass
        clus
vv       CHRM3 MUTATED CHRM3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(625) Variable = GPR87 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR87 MUTATED        2      0      0      2
  GPR87 WILD-TYPE     44     58     64     41
D625V1, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR87 MUTATED        3      0      1
  GPR87 WILD-TYPE     48     83     76
D625V2, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR87 MUTATED        9      0      2      0
  GPR87 WILD-TYPE    169    183     99     20
D625V3, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR87 MUTATED        3      1      2
  GPR87 WILD-TYPE     84     79     98
D625V4, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR87 MUTATED        0      2      5
  GPR87 WILD-TYPE     89    158    133
D625V5, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR87 MUTATED        6      1      0
  GPR87 WILD-TYPE    176    132     72
D625V6, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR87 MUTATED        1      2      4      4
  GPR87 WILD-TYPE    111     94     88    182
D625V7, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR87 MUTATED        1      2      3      0      1      1      3
  GPR87 WILD-TYPE     59     48     46     40     62    124     96
D625V8, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR87 MUTATED        3      3      1      4
  GPR87 WILD-TYPE    127     75     67    192
D625V9, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR87 MUTATED        0      3      1      1      3      0      1      1
  GPR87 WILD-TYPE     40     59     27     79     66     48     42     27
                 vv
clus              CLUS_9
  GPR87 MUTATED        1
  GPR87 WILD-TYPE     73
D625V10, multiclass
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR87 MUTATED        1      0      0      0
  GPR87 WILD-TYPE     32     31     27     19
D625V11, multiclass
[1] "Remove cluster labels:" "GPR87 MUTATED"         
clus
  GPR87 MUTATED GPR87 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-G5-6641 
"GPR87 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR87 MUTATED        1      0      0      0
  GPR87 WILD-TYPE     53     10     24     22
D625V12, multiclass
[1] "Remove cluster labels:" "GPR87 MUTATED"         
clus
  GPR87 MUTATED GPR87 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-G5-6641 
"GPR87 WILD-TYPE" 

Clustering(626) Variable = AKR1C4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR1C4 MUTATED        0      1      0      1
  AKR1C4 WILD-TYPE     46     57     64     42
D626V1, multiclass
[1] "Remove cluster labels:" "AKR1C4 MUTATED"        
clus
  AKR1C4 MUTATED AKR1C4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AY-4071 
"AKR1C4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR1C4 MUTATED        0      1      1
  AKR1C4 WILD-TYPE     51     82     76
D626V2, multiclass
[1] "Remove cluster labels:" "AKR1C4 MUTATED"        
clus
  AKR1C4 MUTATED AKR1C4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" "AKR1C4 WILD-TYPE" 
      TCGA-AY-4071 
"AKR1C4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR1C4 MUTATED        6      3      2      0
  AKR1C4 WILD-TYPE    172    180     99     20
D626V3, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR1C4 MUTATED        3      1      4
  AKR1C4 WILD-TYPE     84     79     96
D626V4, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR1C4 MUTATED        1      2      3
  AKR1C4 WILD-TYPE     88    158    135
D626V5, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR1C4 MUTATED        3      3      0
  AKR1C4 WILD-TYPE    179    130     72
D626V6, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR1C4 MUTATED        3      4      2      2
  AKR1C4 WILD-TYPE    109     92     90    184
D626V7, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKR1C4 MUTATED        1      4      1      1      1      1      2
  AKR1C4 WILD-TYPE     59     46     48     39     62    124     97
D626V8, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR1C4 MUTATED        4      3      2      2
  AKR1C4 WILD-TYPE    126     75     66    194
D626V9, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AKR1C4 MUTATED        2      2      2      1      1      1      1      1
  AKR1C4 WILD-TYPE     38     60     26     79     68     47     42     27
                  vv
clus               CLUS_9
  AKR1C4 MUTATED        0
  AKR1C4 WILD-TYPE     74
D626V10, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR1C4 MUTATED        1      1      2      1
  AKR1C4 WILD-TYPE     32     30     25     18
D626V11, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR1C4 MUTATED        2      0      1      2
  AKR1C4 WILD-TYPE     52     10     23     20
D626V12, multiclass
        clus
vv       AKR1C4 MUTATED AKR1C4 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(627) Variable = E2F6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F6 MUTATED        0      0      0      0
  E2F6 WILD-TYPE     46     58     64     43
D627V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F6 MUTATED        0      0      0
  E2F6 WILD-TYPE     51     83     77
D627V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F6 MUTATED        0      2      2      0
  E2F6 WILD-TYPE    178    181     99     20
D627V3, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            0            178
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F6 MUTATED        1      3      0
  E2F6 WILD-TYPE     86     77    100
D627V4, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F6 MUTATED        1      2      0
  E2F6 WILD-TYPE     88    158    138
D627V5, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F6 MUTATED        1      2      0
  E2F6 WILD-TYPE    181    131     72
D627V6, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F6 MUTATED        2      1      1      0
  E2F6 WILD-TYPE    110     95     91    186
D627V7, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  E2F6 MUTATED        1      1      0      1      1      0      0
  E2F6 WILD-TYPE     59     49     49     39     62    125     99
D627V8, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F6 MUTATED        2      1      1      0
  E2F6 WILD-TYPE    128     77     67    196
D627V9, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  E2F6 MUTATED        1      1      0      2      0      0      0      0      0
  E2F6 WILD-TYPE     39     61     28     78     69     48     43     28     74
D627V10, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F6 MUTATED        1      1      1      0
  E2F6 WILD-TYPE     32     30     26     19
D627V11, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F6 MUTATED        2      0      1      0
  E2F6 WILD-TYPE     52     10     23     22
D627V12, multiclass
        clus
vv       E2F6 MUTATED E2F6 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(628) Variable = PRKCI MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCI MUTATED        3      0      0      2
  PRKCI WILD-TYPE     43     58     64     41
D628V1, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCI MUTATED        3      2      0
  PRKCI WILD-TYPE     48     81     77
D628V2, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCI MUTATED       13      4      2      0
  PRKCI WILD-TYPE    165    179     99     20
D628V3, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1            13             165
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCI MUTATED        4      2      9
  PRKCI WILD-TYPE     83     78     91
D628V4, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCI MUTATED        2      8      7
  PRKCI WILD-TYPE     87    152    131
D628V5, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCI MUTATED        6     10      1
  PRKCI WILD-TYPE    176    123     71
D628V6, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             6             176
  CLUS_2            10             123
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCI MUTATED        2      9      3      6
  PRKCI WILD-TYPE    110     87     89    180
D628V7, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             2             110
  CLUS_2             9              87
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKCI MUTATED        1      6      4      0      3      1      5
  PRKCI WILD-TYPE     59     44     45     40     60    124     94
D628V8, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             1              59
  CLUS_2             6              44
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCI MUTATED        8      2      2      8
  PRKCI WILD-TYPE    122     76     66    188
D628V9, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKCI MUTATED        2      0      2      6      6      0      2      0
  PRKCI WILD-TYPE     38     62     26     74     63     48     41     28
                 vv
clus              CLUS_9
  PRKCI MUTATED        2
  PRKCI WILD-TYPE     72
D628V10, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             6              74
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCI MUTATED        1      1      1      0
  PRKCI WILD-TYPE     32     30     26     19
D628V11, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCI MUTATED        2      1      0      0
  PRKCI WILD-TYPE     52      9     24     22
D628V12, multiclass
        clus
vv       PRKCI MUTATED PRKCI WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(629) Variable = SEC31A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        2      0      1      0
  SEC31A WILD-TYPE     44     58     63     43
D629V1, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC31A MUTATED        2      0      1
  SEC31A WILD-TYPE     49     83     76
D629V2, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED       11      2      2      0
  SEC31A WILD-TYPE    167    181     99     20
D629V3, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1             11              167
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC31A MUTATED        6      1      5
  SEC31A WILD-TYPE     81     79     95
D629V4, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              6               81
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC31A MUTATED        2      3      7
  SEC31A WILD-TYPE     87    157    131
D629V5, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC31A MUTATED        7      3      2
  SEC31A WILD-TYPE    175    130     70
D629V6, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        1      6      5      3
  SEC31A WILD-TYPE    111     90     87    183
D629V7, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              5               87
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEC31A MUTATED        0      2      7      1      2      1      2
  SEC31A WILD-TYPE     60     48     42     39     61    124     97
D629V8, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        6      3      2      4
  SEC31A WILD-TYPE    124     75     66    192
D629V9, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SEC31A MUTATED        1      4      0      1      6      1      2      0
  SEC31A WILD-TYPE     39     58     28     79     63     47     41     28
                  vv
clus               CLUS_9
  SEC31A MUTATED        0
  SEC31A WILD-TYPE     74
D629V10, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        0      1      1      4
  SEC31A WILD-TYPE     33     30     26     15
D629V11, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC31A MUTATED        2      0      4      0
  SEC31A WILD-TYPE     52     10     20     22
D629V12, multiclass
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(630) Variable = KIAA0319L MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319L MUTATED        3      0      1      2
  KIAA0319L WILD-TYPE     43     58     63     41
D630V1, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 3                  43
  CLUS_2                 0                  58
  CLUS_3                 1                  63
  CLUS_4                 2                  41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIAA0319L MUTATED        4      1      1
  KIAA0319L WILD-TYPE     47     82     76
D630V2, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 4                  47
  CLUS_2                 1                  82
  CLUS_3                 1                  76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319L MUTATED       17      2      1      0
  KIAA0319L WILD-TYPE    161    181    100     20
D630V3, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                17                 161
  CLUS_2                 2                 181
  CLUS_3                 1                 100
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIAA0319L MUTATED        5      1      8
  KIAA0319L WILD-TYPE     82     79     92
D630V4, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 5                  82
  CLUS_2                 1                  79
  CLUS_3                 8                  92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIAA0319L MUTATED        4      4      9
  KIAA0319L WILD-TYPE     85    156    129
D630V5, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 4                  85
  CLUS_2                 4                 156
  CLUS_3                 9                 129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIAA0319L MUTATED       11      5      1
  KIAA0319L WILD-TYPE    171    128     71
D630V6, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                11                 171
  CLUS_2                 5                 128
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319L MUTATED        2      7      5      6
  KIAA0319L WILD-TYPE    110     89     87    180
D630V7, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 7                  89
  CLUS_3                 5                  87
  CLUS_4                 6                 180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0319L MUTATED        1      1      8      1      2      1      6
  KIAA0319L WILD-TYPE     59     49     41     39     61    124     93
D630V8, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 1                  49
  CLUS_3                 8                  41
  CLUS_4                 1                  39
  CLUS_5                 2                  61
  CLUS_6                 1                 124
  CLUS_7                 6                  93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319L MUTATED        6      2      0     11
  KIAA0319L WILD-TYPE    124     76     68    185
D630V9, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 6                 124
  CLUS_2                 2                  76
  CLUS_3                 0                  68
  CLUS_4                11                 185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0319L MUTATED        1      3      2      1      9      1      0      1
  KIAA0319L WILD-TYPE     39     59     26     79     60     47     43     27
                     vv
clus                  CLUS_9
  KIAA0319L MUTATED        1
  KIAA0319L WILD-TYPE     73
D630V10, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 3                  59
  CLUS_3                 2                  26
  CLUS_4                 1                  79
  CLUS_5                 9                  60
  CLUS_6                 1                  47
  CLUS_7                 0                  43
  CLUS_8                 1                  27
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319L MUTATED        1      0      0      3
  KIAA0319L WILD-TYPE     32     31     27     16
D630V11, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 0                  31
  CLUS_3                 0                  27
  CLUS_4                 3                  16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319L MUTATED        2      0      2      0
  KIAA0319L WILD-TYPE     52     10     22     22
D630V12, multiclass
        clus
vv       KIAA0319L MUTATED KIAA0319L WILD-TYPE
  CLUS_1                 2                  52
  CLUS_2                 0                  10
  CLUS_3                 2                  22
  CLUS_4                 0                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(631) Variable = BACE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BACE2 MUTATED        1      0      0      2
  BACE2 WILD-TYPE     45     58     64     41
D631V1, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BACE2 MUTATED        2      1      0
  BACE2 WILD-TYPE     49     82     77
D631V2, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BACE2 MUTATED        8      1      2      0
  BACE2 WILD-TYPE    170    182     99     20
D631V3, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BACE2 MUTATED        3      2      3
  BACE2 WILD-TYPE     84     78     97
D631V4, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BACE2 MUTATED        1      4      3
  BACE2 WILD-TYPE     88    156    135
D631V5, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BACE2 MUTATED        4      2      2
  BACE2 WILD-TYPE    178    131     70
D631V6, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BACE2 MUTATED        1      3      4      3
  BACE2 WILD-TYPE    111     93     88    183
D631V7, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BACE2 MUTATED        0      1      4      1      2      0      3
  BACE2 WILD-TYPE     60     49     45     39     61    125     96
D631V8, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BACE2 MUTATED        4      4      0      3
  BACE2 WILD-TYPE    126     74     68    193
D631V9, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BACE2 MUTATED        1      2      1      1      4      0      1      1
  BACE2 WILD-TYPE     39     60     27     79     65     48     42     27
                 vv
clus              CLUS_9
  BACE2 MUTATED        0
  BACE2 WILD-TYPE     74
D631V10, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BACE2 MUTATED        1      1      0      2
  BACE2 WILD-TYPE     32     30     27     17
D631V11, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BACE2 MUTATED        2      0      2      0
  BACE2 WILD-TYPE     52     10     22     22
D631V12, multiclass
        clus
vv       BACE2 MUTATED BACE2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(632) Variable = VAV2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV2 MUTATED        0      1      0      1
  VAV2 WILD-TYPE     46     57     64     42
D632V1, multiclass
[1] "Remove cluster labels:" "VAV2 MUTATED"          
clus
  VAV2 MUTATED VAV2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3538     TCGA-AA-3542 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AY-4071 
"VAV2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV2 MUTATED        0      0      2
  VAV2 WILD-TYPE     51     83     75
D632V2, multiclass
[1] "Remove cluster labels:" "VAV2 MUTATED"          
clus
  VAV2 MUTATED VAV2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3538     TCGA-AA-3542 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" "VAV2 WILD-TYPE" 
    TCGA-AY-4071 
"VAV2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV2 MUTATED       13      3      3      0
  VAV2 WILD-TYPE    165    180     98     20
D632V3, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV2 MUTATED        4      4      8
  VAV2 WILD-TYPE     83     76     92
D632V4, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV2 MUTATED        2      5      9
  VAV2 WILD-TYPE     87    155    129
D632V5, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV2 MUTATED       11      5      0
  VAV2 WILD-TYPE    171    128     72
D632V6, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV2 MUTATED        5      7      5      2
  VAV2 WILD-TYPE    107     89     87    184
D632V7, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            7             89
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VAV2 MUTATED        5      3      6      2      0      1      2
  VAV2 WILD-TYPE     55     47     43     38     63    124     97
D632V8, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            3             47
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV2 MUTATED       13      1      1      4
  VAV2 WILD-TYPE    117     77     67    192
D632V9, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VAV2 MUTATED        3      3      0      3      5      1      4      0      0
  VAV2 WILD-TYPE     37     59     28     77     64     47     39     28     74
D632V10, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV2 MUTATED        2      0      0      3
  VAV2 WILD-TYPE     31     31     27     16
D632V11, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV2 MUTATED        4      0      0      1
  VAV2 WILD-TYPE     50     10     24     21
D632V12, multiclass
        clus
vv       VAV2 MUTATED VAV2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(633) Variable = GAB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB1 MUTATED        3      0      0      3
  GAB1 WILD-TYPE     43     58     64     40
D633V1, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB1 MUTATED        4      2      0
  GAB1 WILD-TYPE     47     81     77
D633V2, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB1 MUTATED       10      3      2      0
  GAB1 WILD-TYPE    168    180     99     20
D633V3, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB1 MUTATED        2      2      5
  GAB1 WILD-TYPE     85     78     95
D633V4, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB1 MUTATED        3      6      5
  GAB1 WILD-TYPE     86    154    133
D633V5, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB1 MUTATED        5      7      2
  GAB1 WILD-TYPE    177    126     70
D633V6, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            7            126
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB1 MUTATED        1      5      4      5
  GAB1 WILD-TYPE    111     91     88    181
D633V7, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            4             88
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAB1 MUTATED        1      1      4      1      2      1      5
  GAB1 WILD-TYPE     59     49     45     39     61    124     94
D633V8, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB1 MUTATED        4      2      1      7
  GAB1 WILD-TYPE    126     76     67    189
D633V9, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GAB1 MUTATED        3      2      1      1      6      0      1      0      0
  GAB1 WILD-TYPE     37     60     27     79     63     48     42     28     74
D633V10, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB1 MUTATED        3      0      0      1
  GAB1 WILD-TYPE     30     31     27     18
D633V11, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB1 MUTATED        3      0      1      0
  GAB1 WILD-TYPE     51     10     23     22
D633V12, multiclass
        clus
vv       GAB1 MUTATED GAB1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(634) Variable = RPA3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPA3 MUTATED        0      0      0      0
  RPA3 WILD-TYPE     46     58     64     43
D634V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPA3 MUTATED        0      0      0
  RPA3 WILD-TYPE     51     83     77
D634V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPA3 MUTATED        1      2      1      0
  RPA3 WILD-TYPE    177    181    100     20
D634V3, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            1            177
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPA3 MUTATED        1      2      1
  RPA3 WILD-TYPE     86     78     99
D634V4, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPA3 MUTATED        1      3      0
  RPA3 WILD-TYPE     88    157    138
D634V5, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPA3 MUTATED        1      0      3
  RPA3 WILD-TYPE    181    133     69
D634V6, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            0            133
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPA3 MUTATED        2      1      1      0
  RPA3 WILD-TYPE    110     95     91    186
D634V7, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPA3 MUTATED        0      1      1      1      1      0      0
  RPA3 WILD-TYPE     60     49     48     39     62    125     99
D634V8, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPA3 MUTATED        2      0      2      0
  RPA3 WILD-TYPE    128     78     66    196
D634V9, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            2             66
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RPA3 MUTATED        0      0      0      1      1      0      2      0      0
  RPA3 WILD-TYPE     40     62     28     79     68     48     41     28     74
D634V10, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPA3 MUTATED        2      0      0      1
  RPA3 WILD-TYPE     31     31     27     18
D634V11, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPA3 MUTATED        0      0      1      2
  RPA3 WILD-TYPE     54     10     23     20
D634V12, multiclass
        clus
vv       RPA3 MUTATED RPA3 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(635) Variable = GPR61 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR61 MUTATED        2      0      2      0
  GPR61 WILD-TYPE     44     58     62     43
D635V1, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR61 MUTATED        1      2      1
  GPR61 WILD-TYPE     50     81     76
D635V2, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR61 MUTATED        6      3      2      0
  GPR61 WILD-TYPE    172    180     99     20
D635V3, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR61 MUTATED        4      1      3
  GPR61 WILD-TYPE     83     79     97
D635V4, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR61 MUTATED        2      1      6
  GPR61 WILD-TYPE     87    159    132
D635V5, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR61 MUTATED        5      2      2
  GPR61 WILD-TYPE    177    131     70
D635V6, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR61 MUTATED        1      3      4      4
  GPR61 WILD-TYPE    111     93     88    182
D635V7, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR61 MUTATED        2      3      3      0      0      2      2
  GPR61 WILD-TYPE     58     47     46     40     63    123     97
D635V8, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR61 MUTATED        4      0      1      7
  GPR61 WILD-TYPE    126     78     67    189
D635V9, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR61 MUTATED        1      1      1      1      4      0      1      0
  GPR61 WILD-TYPE     39     61     27     79     65     48     42     28
                 vv
clus              CLUS_9
  GPR61 MUTATED        3
  GPR61 WILD-TYPE     71
D635V10, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR61 MUTATED        2      0      2      2
  GPR61 WILD-TYPE     31     31     25     17
D635V11, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR61 MUTATED        3      0      3      0
  GPR61 WILD-TYPE     51     10     21     22
D635V12, multiclass
        clus
vv       GPR61 MUTATED GPR61 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(636) Variable = OAS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OAS1 MUTATED        3      0      0      0
  OAS1 WILD-TYPE     43     58     64     43
D636V1, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OAS1 MUTATED        2      1      0
  OAS1 WILD-TYPE     49     82     77
D636V2, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OAS1 MUTATED        5      1      3      0
  OAS1 WILD-TYPE    173    182     98     20
D636V3, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OAS1 MUTATED        2      3      1
  OAS1 WILD-TYPE     85     77     99
D636V4, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3             77
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OAS1 MUTATED        0      1      5
  OAS1 WILD-TYPE     89    159    133
D636V5, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OAS1 MUTATED        4      2      0
  OAS1 WILD-TYPE    178    131     72
D636V6, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OAS1 MUTATED        4      1      1      3
  OAS1 WILD-TYPE    108     95     91    183
D636V7, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OAS1 MUTATED        3      2      0      0      1      1      2
  OAS1 WILD-TYPE     57     48     49     40     62    124     97
D636V8, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OAS1 MUTATED        3      1      1      4
  OAS1 WILD-TYPE    127     77     67    192
D636V9, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  OAS1 MUTATED        0      1      1      3      2      0      1      0      1
  OAS1 WILD-TYPE     40     61     27     77     67     48     42     28     73
D636V10, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OAS1 MUTATED        1      1      1      0
  OAS1 WILD-TYPE     32     30     26     19
D636V11, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OAS1 MUTATED        2      0      1      0
  OAS1 WILD-TYPE     52     10     23     22
D636V12, multiclass
        clus
vv       OAS1 MUTATED OAS1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(637) Variable = OLR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLR1 MUTATED        0      0      0      1
  OLR1 WILD-TYPE     46     58     64     42
D637V1, multiclass
[1] "Remove cluster labels:" "OLR1 MUTATED"          
clus
  OLR1 MUTATED OLR1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OLR1 MUTATED        0      0      1
  OLR1 WILD-TYPE     51     83     76
D637V2, multiclass
[1] "Remove cluster labels:" "OLR1 MUTATED"          
clus
  OLR1 MUTATED OLR1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"OLR1 WILD-TYPE" "OLR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLR1 MUTATED        4      4      2      0
  OLR1 WILD-TYPE    174    179     99     20
D637V3, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OLR1 MUTATED        2      2      4
  OLR1 WILD-TYPE     85     78     96
D637V4, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OLR1 MUTATED        1      4      4
  OLR1 WILD-TYPE     88    156    134
D637V5, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OLR1 MUTATED        6      3      0
  OLR1 WILD-TYPE    176    130     72
D637V6, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLR1 MUTATED        2      3      2      3
  OLR1 WILD-TYPE    110     93     90    183
D637V7, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OLR1 MUTATED        2      2      2      1      0      1      2
  OLR1 WILD-TYPE     58     48     47     39     63    124     97
D637V8, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLR1 MUTATED        4      2      1      3
  OLR1 WILD-TYPE    126     76     67    193
D637V9, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  OLR1 MUTATED        1      3      1      3      1      0      1      0      0
  OLR1 WILD-TYPE     39     59     27     77     68     48     42     28     74
D637V10, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLR1 MUTATED        1      1      0      2
  OLR1 WILD-TYPE     32     30     27     17
D637V11, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLR1 MUTATED        2      0      1      1
  OLR1 WILD-TYPE     52     10     23     21
D637V12, multiclass
        clus
vv       OLR1 MUTATED OLR1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(638) Variable = ELFN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELFN2 MUTATED        0      0      1      0
  ELFN2 WILD-TYPE     46     58     63     43
D638V1, multiclass
[1] "Remove cluster labels:" "ELFN2 MUTATED"         
clus
  ELFN2 MUTATED ELFN2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELFN2 MUTATED        0      0      1
  ELFN2 WILD-TYPE     51     83     76
D638V2, multiclass
[1] "Remove cluster labels:" "ELFN2 MUTATED"         
clus
  ELFN2 MUTATED ELFN2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELFN2 MUTATED        4      5      0      0
  ELFN2 WILD-TYPE    174    178    101     20
D638V3, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELFN2 MUTATED        1      3      4
  ELFN2 WILD-TYPE     86     77     96
D638V4, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELFN2 MUTATED        0      3      3
  ELFN2 WILD-TYPE     89    157    135
D638V5, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELFN2 MUTATED        3      3      0
  ELFN2 WILD-TYPE    179    130     72
D638V6, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELFN2 MUTATED        3      2      3      1
  ELFN2 WILD-TYPE    109     94     89    185
D638V7, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ELFN2 MUTATED        2      2      2      2      0      0      1
  ELFN2 WILD-TYPE     58     48     47     38     63    125     98
D638V8, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELFN2 MUTATED        6      1      0      2
  ELFN2 WILD-TYPE    124     77     68    194
D638V9, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ELFN2 MUTATED        4      2      0      0      0      2      0      0
  ELFN2 WILD-TYPE     36     60     28     80     69     46     43     28
                 vv
clus              CLUS_9
  ELFN2 MUTATED        1
  ELFN2 WILD-TYPE     73
D638V10, multiclass
        clus
vv       ELFN2 MUTATED ELFN2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELFN2 MUTATED        1      0      0      1
  ELFN2 WILD-TYPE     32     31     27     18
D638V11, multiclass
[1] "Remove cluster labels:" "ELFN2 MUTATED"         
clus
  ELFN2 MUTATED ELFN2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELFN2 MUTATED        1      0      0      1
  ELFN2 WILD-TYPE     53     10     24     21
D638V12, multiclass
[1] "Remove cluster labels:" "ELFN2 MUTATED"         
clus
  ELFN2 MUTATED ELFN2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" "ELFN2 WILD-TYPE" 

Clustering(639) Variable = ANAPC4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC4 MUTATED        0      0      0      2
  ANAPC4 WILD-TYPE     46     58     64     41
D639V1, multiclass
[1] "Remove cluster labels:" "ANAPC4 MUTATED"        
clus
  ANAPC4 MUTATED ANAPC4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AY-4071 
"ANAPC4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC4 MUTATED        1      0      1
  ANAPC4 WILD-TYPE     50     83     76
D639V2, multiclass
[1] "Remove cluster labels:" "ANAPC4 MUTATED"        
clus
  ANAPC4 MUTATED ANAPC4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" "ANAPC4 WILD-TYPE" 
      TCGA-AY-4071 
"ANAPC4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC4 MUTATED        6      5      1      0
  ANAPC4 WILD-TYPE    172    178    100     20
D639V3, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC4 MUTATED        3      3      4
  ANAPC4 WILD-TYPE     84     77     96
D639V4, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC4 MUTATED        2      5      4
  ANAPC4 WILD-TYPE     87    155    134
D639V5, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC4 MUTATED        4      4      3
  ANAPC4 WILD-TYPE    178    129     69
D639V6, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC4 MUTATED        4      3      3      2
  ANAPC4 WILD-TYPE    108     93     89    184
D639V7, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANAPC4 MUTATED        2      2      1      3      3      0      1
  ANAPC4 WILD-TYPE     58     48     48     37     60    125     98
D639V8, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              3               37
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC4 MUTATED        5      3      2      1
  ANAPC4 WILD-TYPE    125     75     66    195
D639V9, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANAPC4 MUTATED        3      3      0      0      1      2      2      0
  ANAPC4 WILD-TYPE     37     59     28     80     68     46     41     28
                  vv
clus               CLUS_9
  ANAPC4 MUTATED        0
  ANAPC4 WILD-TYPE     74
D639V10, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC4 MUTATED        2      1      0      1
  ANAPC4 WILD-TYPE     31     30     27     18
D639V11, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC4 MUTATED        2      1      0      1
  ANAPC4 WILD-TYPE     52      9     24     21
D639V12, multiclass
        clus
vv       ANAPC4 MUTATED ANAPC4 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(640) Variable = ITGB8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        4      0      0      2
  ITGB8 WILD-TYPE     42     58     64     41
D640V1, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB8 MUTATED        4      1      1
  ITGB8 WILD-TYPE     47     82     76
D640V2, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED       10      1      0      1
  ITGB8 WILD-TYPE    168    182    101     19
D640V3, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB8 MUTATED        3      1      2
  ITGB8 WILD-TYPE     84     79     98
D640V4, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB8 MUTATED        1      2      6
  ITGB8 WILD-TYPE     88    158    132
D640V5, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB8 MUTATED        4      3      2
  ITGB8 WILD-TYPE    178    130     70
D640V6, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        1      4      1      6
  ITGB8 WILD-TYPE    111     92     91    180
D640V7, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGB8 MUTATED        1      1      2      2      1      1      4
  ITGB8 WILD-TYPE     59     49     47     38     62    124     95
D640V8, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        2      1      0      8
  ITGB8 WILD-TYPE    128     77     68    188
D640V9, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITGB8 MUTATED        1      1      0      2      6      0      0      0
  ITGB8 WILD-TYPE     39     61     28     78     63     48     43     28
                 vv
clus              CLUS_9
  ITGB8 MUTATED        1
  ITGB8 WILD-TYPE     73
D640V10, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        1      0      1      1
  ITGB8 WILD-TYPE     32     31     26     18
D640V11, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        1      0      1      1
  ITGB8 WILD-TYPE     53     10     23     21
D640V12, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(641) Variable = PAXIP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAXIP1 MUTATED        3      0      0      1
  PAXIP1 WILD-TYPE     43     58     64     42
D641V1, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAXIP1 MUTATED        4      0      0
  PAXIP1 WILD-TYPE     47     83     77
D641V2, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAXIP1 MUTATED       11      5      1      3
  PAXIP1 WILD-TYPE    167    178    100     17
D641V3, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAXIP1 MUTATED        7      4      5
  PAXIP1 WILD-TYPE     80     76     95
D641V4, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              4               76
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAXIP1 MUTATED        1      5      9
  PAXIP1 WILD-TYPE     88    155    129
D641V5, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAXIP1 MUTATED        9      4      2
  PAXIP1 WILD-TYPE    173    129     70
D641V6, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAXIP1 MUTATED        3      6      7      4
  PAXIP1 WILD-TYPE    109     90     85    182
D641V7, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              6               90
  CLUS_3              7               85
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAXIP1 MUTATED        2      5      6      0      2      0      5
  PAXIP1 WILD-TYPE     58     45     43     40     61    125     94
D641V8, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              5               45
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAXIP1 MUTATED        3      7      3      6
  PAXIP1 WILD-TYPE    127     71     65    190
D641V9, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              7               71
  CLUS_3              3               65
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PAXIP1 MUTATED        1      6      1      2      5      1      2      1
  PAXIP1 WILD-TYPE     39     56     27     78     64     47     41     27
                  vv
clus               CLUS_9
  PAXIP1 MUTATED        0
  PAXIP1 WILD-TYPE     74
D641V10, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAXIP1 MUTATED        5      1      1      3
  PAXIP1 WILD-TYPE     28     30     26     16
D641V11, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAXIP1 MUTATED        7      1      1      1
  PAXIP1 WILD-TYPE     47      9     23     21
D641V12, multiclass
        clus
vv       PAXIP1 MUTATED PAXIP1 WILD-TYPE
  CLUS_1              7               47
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(642) Variable = HIST1H1C MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1C MUTATED        0      0      0      0
  HIST1H1C WILD-TYPE     46     58     64     43
D642V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1C MUTATED        0      0      0
  HIST1H1C WILD-TYPE     51     83     77
D642V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1C MUTATED        4      0      0      0
  HIST1H1C WILD-TYPE    174    183    101     20
D642V3, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                4                174
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1C MUTATED        1      0      2
  HIST1H1C WILD-TYPE     86     80     98
D642V4, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                0                 80
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1C MUTATED        0      3      0
  HIST1H1C WILD-TYPE     89    157    138
D642V5, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                3                157
  CLUS_3                0                138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1C MUTATED        0      3      0
  HIST1H1C WILD-TYPE    182    130     72
D642V6, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                0                182
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1C MUTATED        0      1      1      2
  HIST1H1C WILD-TYPE    112     95     91    184
D642V7, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1C MUTATED        0      1      1      0      0      0      2
  HIST1H1C WILD-TYPE     60     49     48     40     63    125     97
D642V8, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1C MUTATED        0      1      1      2
  HIST1H1C WILD-TYPE    130     77     67    194
D642V9, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                0                130
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H1C MUTATED        0      1      1      0      0      1      0      0
  HIST1H1C WILD-TYPE     40     61     27     80     69     47     43     28
                    vv
clus                 CLUS_9
  HIST1H1C MUTATED        1
  HIST1H1C WILD-TYPE     73
D642V10, multiclass
        clus
vv       HIST1H1C MUTATED HIST1H1C WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                0                 69
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1C MUTATED        0      0      0      0
  HIST1H1C WILD-TYPE     33     31     27     19
D642V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1C MUTATED        0      0      0      0
  HIST1H1C WILD-TYPE     54     10     24     22
D642V12, multiclass

Clustering(643) Variable = IL18R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL18R1 MUTATED        4      0      2      3
  IL18R1 WILD-TYPE     42     58     62     40
D643V1, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL18R1 MUTATED        4      3      2
  IL18R1 WILD-TYPE     47     80     75
D643V2, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL18R1 MUTATED       10      2      2      1
  IL18R1 WILD-TYPE    168    181     99     19
D643V3, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL18R1 MUTATED        3      0      3
  IL18R1 WILD-TYPE     84     80     97
D643V4, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL18R1 MUTATED        2      4      6
  IL18R1 WILD-TYPE     87    156    132
D643V5, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL18R1 MUTATED        3      6      3
  IL18R1 WILD-TYPE    179    127     69
D643V6, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL18R1 MUTATED        1      3      2     10
  IL18R1 WILD-TYPE    111     93     90    176
D643V7, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL18R1 MUTATED        1      2      2      0      1      2      8
  IL18R1 WILD-TYPE     59     48     47     40     62    123     91
D643V8, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL18R1 MUTATED        1      2      1     12
  IL18R1 WILD-TYPE    129     76     67    184
D643V9, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL18R1 MUTATED        1      1      2      1      4      0      1      2
  IL18R1 WILD-TYPE     39     61     26     79     65     48     42     26
                  vv
clus               CLUS_9
  IL18R1 MUTATED        4
  IL18R1 WILD-TYPE     70
D643V10, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              2               26
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL18R1 MUTATED        0      1      1      0
  IL18R1 WILD-TYPE     33     30     26     19
D643V11, multiclass
[1] "Remove cluster labels:" "IL18R1 MUTATED"        
clus
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6309 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL18R1 MUTATED        0      0      1      1
  IL18R1 WILD-TYPE     54     10     23     21
D643V12, multiclass
[1] "Remove cluster labels:" "IL18R1 MUTATED"        
clus
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6309 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 

Clustering(644) Variable = IBTK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        5      0      0      3
  IBTK WILD-TYPE     41     58     64     40
D644V1, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IBTK MUTATED        5      1      2
  IBTK WILD-TYPE     46     82     75
D644V2, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            5             46
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED       15      5      1      1
  IBTK WILD-TYPE    163    178    100     19
D644V3, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1           15            163
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IBTK MUTATED        3      5      7
  IBTK WILD-TYPE     84     75     93
D644V4, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            3             84
  CLUS_2            5             75
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IBTK MUTATED        3      6      9
  IBTK WILD-TYPE     86    154    129
D644V5, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IBTK MUTATED        9      8      1
  IBTK WILD-TYPE    173    125     71
D644V6, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            9            173
  CLUS_2            8            125
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        4      7      4      8
  IBTK WILD-TYPE    108     89     88    178
D644V7, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            4            108
  CLUS_2            7             89
  CLUS_3            4             88
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IBTK MUTATED        2      2      5      2      5      0      7
  IBTK WILD-TYPE     58     48     44     38     58    125     92
D644V8, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            2             38
  CLUS_5            5             58
  CLUS_6            0            125
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        6      5      3      9
  IBTK WILD-TYPE    124     73     65    187
D644V9, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            6            124
  CLUS_2            5             73
  CLUS_3            3             65
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IBTK MUTATED        1      5      2      1      9      1      2      1      1
  IBTK WILD-TYPE     39     57     26     79     60     47     41     27     73
D644V10, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            1             39
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            9             60
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        1      3      3      2
  IBTK WILD-TYPE     32     28     24     17
D644V11, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             28
  CLUS_3            3             24
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        4      2      2      1
  IBTK WILD-TYPE     50      8     22     21
D644V12, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            4             50
  CLUS_2            2              8
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(645) Variable = RTP3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTP3 MUTATED        0      0      0      0
  RTP3 WILD-TYPE     46     58     64     43
D645V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTP3 MUTATED        0      0      0
  RTP3 WILD-TYPE     51     83     77
D645V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTP3 MUTATED        1      3      1      0
  RTP3 WILD-TYPE    177    180    100     20
D645V3, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            1            177
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTP3 MUTATED        1      3      1
  RTP3 WILD-TYPE     86     77     99
D645V4, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTP3 MUTATED        0      4      0
  RTP3 WILD-TYPE     89    156    138
D645V5, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTP3 MUTATED        0      4      0
  RTP3 WILD-TYPE    182    129     72
D645V6, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            0            182
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTP3 MUTATED        3      1      1      0
  RTP3 WILD-TYPE    109     95     91    186
D645V7, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RTP3 MUTATED        3      0      1      0      1      0      0
  RTP3 WILD-TYPE     57     50     48     40     62    125     99
D645V8, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTP3 MUTATED        3      1      1      0
  RTP3 WILD-TYPE    127     77     67    196
D645V9, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RTP3 MUTATED        1      1      0      1      1      0      1      0      0
  RTP3 WILD-TYPE     39     61     28     79     68     48     42     28     74
D645V10, multiclass
        clus
vv       RTP3 MUTATED RTP3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTP3 MUTATED        1      0      0      1
  RTP3 WILD-TYPE     32     31     27     18
D645V11, multiclass
[1] "Remove cluster labels:" "RTP3 MUTATED"          
clus
  RTP3 MUTATED RTP3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTP3 MUTATED        1      0      1      0
  RTP3 WILD-TYPE     53     10     23     22
D645V12, multiclass
[1] "Remove cluster labels:" "RTP3 MUTATED"          
clus
  RTP3 MUTATED RTP3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" "RTP3 WILD-TYPE" 

Clustering(646) Variable = TAOK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK3 MUTATED        3      0      0      2
  TAOK3 WILD-TYPE     43     58     64     41
D646V1, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK3 MUTATED        3      2      0
  TAOK3 WILD-TYPE     48     81     77
D646V2, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK3 MUTATED       15      1      4      0
  TAOK3 WILD-TYPE    163    182     97     20
D646V3, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK3 MUTATED        5      2      9
  TAOK3 WILD-TYPE     82     78     91
D646V4, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK3 MUTATED        2      5      8
  TAOK3 WILD-TYPE     87    155    130
D646V5, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK3 MUTATED        8      4      3
  TAOK3 WILD-TYPE    174    129     69
D646V6, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK3 MUTATED        3      6      6      5
  TAOK3 WILD-TYPE    109     90     86    181
D646V7, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAOK3 MUTATED        3      0      9      0      3      1      4
  TAOK3 WILD-TYPE     57     50     40     40     60    124     95
D646V8, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK3 MUTATED       10      3      0      6
  TAOK3 WILD-TYPE    120     75     68    190
D646V9, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TAOK3 MUTATED        3      4      2      3      6      1      0      0
  TAOK3 WILD-TYPE     37     58     26     77     63     47     43     28
                 vv
clus              CLUS_9
  TAOK3 MUTATED        0
  TAOK3 WILD-TYPE     74
D646V10, multiclass
        clus
vv       TAOK3 MUTATED TAOK3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK3 MUTATED        1      1      0      0
  TAOK3 WILD-TYPE     32     30     27     19
D646V11, multiclass
[1] "Remove cluster labels:" "TAOK3 MUTATED"         
clus
  TAOK3 MUTATED TAOK3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3511      TCGA-AD-5900 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901      TCGA-AD-6963 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK3 MUTATED        2      0      0      0
  TAOK3 WILD-TYPE     52     10     24     22
D646V12, multiclass
[1] "Remove cluster labels:" "TAOK3 MUTATED"         
clus
  TAOK3 MUTATED TAOK3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3511      TCGA-AD-5900 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901      TCGA-AD-6963 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" "TAOK3 WILD-TYPE" 

Clustering(647) Variable = RAE1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        2      1      0      1
  RAE1 WILD-TYPE     44     57     64     42
D647V1, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAE1 MUTATED        2      1      1
  RAE1 WILD-TYPE     49     82     76
D647V2, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        5      3      0      0
  RAE1 WILD-TYPE    173    180    101     20
D647V3, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAE1 MUTATED        0      1      4
  RAE1 WILD-TYPE     87     79     96
D647V4, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAE1 MUTATED        1      5      2
  RAE1 WILD-TYPE     88    155    136
D647V5, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAE1 MUTATED        2      4      2
  RAE1 WILD-TYPE    180    129     70
D647V6, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        2      2      1      3
  RAE1 WILD-TYPE    110     94     91    183
D647V7, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAE1 MUTATED        2      1      2      0      0      1      2
  RAE1 WILD-TYPE     58     49     47     40     63    124     97
D647V8, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        1      1      0      5
  RAE1 WILD-TYPE    129     77     68    191
D647V9, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RAE1 MUTATED        0      0      0      2      3      1      1      0      0
  RAE1 WILD-TYPE     40     62     28     78     66     47     42     28     74
D647V10, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        0      0      0      1
  RAE1 WILD-TYPE     33     31     27     18
D647V11, multiclass
[1] "Remove cluster labels:" "RAE1 MUTATED"          
clus
  RAE1 MUTATED RAE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-G5-6641 
"RAE1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        0      0      1      0
  RAE1 WILD-TYPE     54     10     23     22
D647V12, multiclass
[1] "Remove cluster labels:" "RAE1 MUTATED"          
clus
  RAE1 MUTATED RAE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" "RAE1 WILD-TYPE" 
    TCGA-G5-6641 
"RAE1 WILD-TYPE" 

Clustering(648) Variable = KIF2C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2C MUTATED        1      0      0      3
  KIF2C WILD-TYPE     45     58     64     40
D648V1, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2C MUTATED        1      1      2
  KIF2C WILD-TYPE     50     82     75
D648V2, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2C MUTATED        8      3      1      0
  KIF2C WILD-TYPE    170    180    100     20
D648V3, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2C MUTATED        2      2      3
  KIF2C WILD-TYPE     85     78     97
D648V4, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2C MUTATED        0      7      2
  KIF2C WILD-TYPE     89    153    136
D648V5, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             0              89
  CLUS_2             7             153
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2C MUTATED        2      7      0
  KIF2C WILD-TYPE    180    126     72
D648V6, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             2             180
  CLUS_2             7             126
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2C MUTATED        2      3      3      4
  KIF2C WILD-TYPE    110     93     89    182
D648V7, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF2C MUTATED        2      3      3      0      1      0      3
  KIF2C WILD-TYPE     58     47     46     40     62    125     96
D648V8, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2C MUTATED        1      3      4      4
  KIF2C WILD-TYPE    129     75     64    192
D648V9, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             4              64
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF2C MUTATED        0      2      3      1      3      0      2      0
  KIF2C WILD-TYPE     40     60     25     79     66     48     41     28
                 vv
clus              CLUS_9
  KIF2C MUTATED        1
  KIF2C WILD-TYPE     73
D648V10, multiclass
        clus
vv       KIF2C MUTATED KIF2C WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2C MUTATED        0      0      2      0
  KIF2C WILD-TYPE     33     31     25     19
D648V11, multiclass
[1] "Remove cluster labels:" "KIF2C MUTATED"         
clus
  KIF2C MUTATED KIF2C WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1H8      TCGA-EI-6506 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2C MUTATED        0      1      1      0
  KIF2C WILD-TYPE     54      9     23     22
D648V12, multiclass
[1] "Remove cluster labels:" "KIF2C MUTATED"         
clus
  KIF2C MUTATED KIF2C WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1H8      TCGA-EI-6506 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" "KIF2C WILD-TYPE" 

Clustering(649) Variable = C7ORF58 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        3      0      0      4
  C7ORF58 WILD-TYPE     43     58     64     39
D649V1, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED        4      1      2
  C7ORF58 WILD-TYPE     47     82     75
D649V2, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED       16      4      5      1
  C7ORF58 WILD-TYPE    162    179     96     19
D649V3, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1              16               162
  CLUS_2               4               179
  CLUS_3               5                96
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED       10      6      3
  C7ORF58 WILD-TYPE     77     74     97
D649V4, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1              10                77
  CLUS_2               6                74
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED        2      8     11
  C7ORF58 WILD-TYPE     87    152    127
D649V5, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               8               152
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED        9      9      3
  C7ORF58 WILD-TYPE    173    124     69
D649V6, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               9               124
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        6      7      6      7
  C7ORF58 WILD-TYPE    106     89     86    179
D649V7, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               6               106
  CLUS_2               7                89
  CLUS_3               6                86
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C7ORF58 MUTATED        3      3      7      3      4      0      6
  C7ORF58 WILD-TYPE     57     47     42     37     59    125     93
D649V8, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               3                47
  CLUS_3               7                42
  CLUS_4               3                37
  CLUS_5               4                59
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        9      7      1      8
  C7ORF58 WILD-TYPE    121     71     67    188
D649V9, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               7                71
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C7ORF58 MUTATED        1     10      3      4      3      0      1      2
  C7ORF58 WILD-TYPE     39     52     25     76     66     48     42     26
                   vv
clus                CLUS_9
  C7ORF58 MUTATED        1
  C7ORF58 WILD-TYPE     73
D649V10, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               1                39
  CLUS_2              10                52
  CLUS_3               3                25
  CLUS_4               4                76
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               2                26
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        0      2      2      3
  C7ORF58 WILD-TYPE     33     29     25     16
D649V11, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                29
  CLUS_3               2                25
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        3      1      2      1
  C7ORF58 WILD-TYPE     51      9     22     21
D649V12, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(650) Variable = PVRL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        3      0      0      1
  PVRL4 WILD-TYPE     43     58     64     42
D650V1, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL4 MUTATED        4      0      0
  PVRL4 WILD-TYPE     47     83     77
D650V2, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        6      2      2      0
  PVRL4 WILD-TYPE    172    181     99     20
D650V3, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL4 MUTATED        2      2      2
  PVRL4 WILD-TYPE     85     78     98
D650V4, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL4 MUTATED        3      1      4
  PVRL4 WILD-TYPE     86    159    134
D650V5, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL4 MUTATED        6      0      2
  PVRL4 WILD-TYPE    176    133     70
D650V6, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             0             133
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        2      3      1      4
  PVRL4 WILD-TYPE    110     93     91    182
D650V7, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PVRL4 MUTATED        1      2      1      0      2      0      4
  PVRL4 WILD-TYPE     59     48     48     40     61    125     95
D650V8, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        4      2      0      4
  PVRL4 WILD-TYPE    126     76     68    192
D650V9, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PVRL4 MUTATED        2      1      2      0      4      0      0      1
  PVRL4 WILD-TYPE     38     61     26     80     65     48     43     27
                 vv
clus              CLUS_9
  PVRL4 MUTATED        0
  PVRL4 WILD-TYPE     74
D650V10, multiclass
        clus
vv       PVRL4 MUTATED PVRL4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        1      0      1      0
  PVRL4 WILD-TYPE     32     31     26     19
D650V11, multiclass
[1] "Remove cluster labels:" "PVRL4 MUTATED"         
clus
  PVRL4 MUTATED PVRL4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6142 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CM-5860 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL4 MUTATED        1      0      1      0
  PVRL4 WILD-TYPE     53     10     23     22
D650V12, multiclass
[1] "Remove cluster labels:" "PVRL4 MUTATED"         
clus
  PVRL4 MUTATED PVRL4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6142 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CM-5860 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" "PVRL4 WILD-TYPE" 

Clustering(651) Variable = MTDH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTDH MUTATED        1      0      1      2
  MTDH WILD-TYPE     45     58     63     41
D651V1, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTDH MUTATED        1      1      2
  MTDH WILD-TYPE     50     82     75
D651V2, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTDH MUTATED        9      3      0      1
  MTDH WILD-TYPE    169    180    101     19
D651V3, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            9            169
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTDH MUTATED        2      2      5
  MTDH WILD-TYPE     85     78     95
D651V4, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTDH MUTATED        1      6      3
  MTDH WILD-TYPE     88    154    135
D651V5, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTDH MUTATED        3      6      1
  MTDH WILD-TYPE    179    127     71
D651V6, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            3            179
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTDH MUTATED        2      3      4      4
  MTDH WILD-TYPE    110     93     88    182
D651V7, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTDH MUTATED        1      0      5      2      2      0      3
  MTDH WILD-TYPE     59     50     44     38     61    125     96
D651V8, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            5             44
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTDH MUTATED        2      4      1      6
  MTDH WILD-TYPE    128     74     67    190
D651V9, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            2            128
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTDH MUTATED        1      4      1      0      5      0      1      0      1
  MTDH WILD-TYPE     39     58     27     80     64     48     42     28     73
D651V10, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTDH MUTATED        1      0      0      2
  MTDH WILD-TYPE     32     31     27     17
D651V11, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTDH MUTATED        1      0      1      1
  MTDH WILD-TYPE     53     10     23     21
D651V12, multiclass
        clus
vv       MTDH MUTATED MTDH WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(652) Variable = AIFM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIFM1 MUTATED        0      0      0      2
  AIFM1 WILD-TYPE     46     58     64     41
D652V1, multiclass
[1] "Remove cluster labels:" "AIFM1 MUTATED"         
clus
  AIFM1 MUTATED AIFM1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AY-4071 
"AIFM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AIFM1 MUTATED        1      0      1
  AIFM1 WILD-TYPE     50     83     76
D652V2, multiclass
[1] "Remove cluster labels:" "AIFM1 MUTATED"         
clus
  AIFM1 MUTATED AIFM1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AY-4071 
"AIFM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIFM1 MUTATED        7      3      3      0
  AIFM1 WILD-TYPE    171    180     98     20
D652V3, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AIFM1 MUTATED        3      3      5
  AIFM1 WILD-TYPE     84     77     95
D652V4, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AIFM1 MUTATED        3      3      5
  AIFM1 WILD-TYPE     86    157    133
D652V5, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AIFM1 MUTATED        6      4      1
  AIFM1 WILD-TYPE    176    129     71
D652V6, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIFM1 MUTATED        4      4      3      2
  AIFM1 WILD-TYPE    108     92     89    184
D652V7, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AIFM1 MUTATED        2      1      3      3      2      0      2
  AIFM1 WILD-TYPE     58     49     46     37     61    125     97
D652V8, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIFM1 MUTATED        7      2      1      3
  AIFM1 WILD-TYPE    123     76     67    193
D652V9, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AIFM1 MUTATED        2      2      2      2      3      1      1      0
  AIFM1 WILD-TYPE     38     60     26     78     66     47     42     28
                 vv
clus              CLUS_9
  AIFM1 MUTATED        0
  AIFM1 WILD-TYPE     74
D652V10, multiclass
        clus
vv       AIFM1 MUTATED AIFM1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIFM1 MUTATED        0      0      0      1
  AIFM1 WILD-TYPE     33     31     27     18
D652V11, multiclass
[1] "Remove cluster labels:" "AIFM1 MUTATED"         
clus
  AIFM1 MUTATED AIFM1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-G5-6641 
"AIFM1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIFM1 MUTATED        1      0      0      0
  AIFM1 WILD-TYPE     53     10     24     22
D652V12, multiclass
[1] "Remove cluster labels:" "AIFM1 MUTATED"         
clus
  AIFM1 MUTATED AIFM1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" "AIFM1 WILD-TYPE" 
     TCGA-G5-6641 
"AIFM1 WILD-TYPE" 

Clustering(653) Variable = WNK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        2      0      0      1
  WNK4 WILD-TYPE     44     58     64     42
D653V1, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED        3      0      0
  WNK4 WILD-TYPE     48     83     77
D653V2, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED       11      1      0      0
  WNK4 WILD-TYPE    167    182    101     20
D653V3, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED        4      0      5
  WNK4 WILD-TYPE     83     80     95
D653V4, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED        2      1      7
  WNK4 WILD-TYPE     87    159    131
D653V5, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED        6      2      2
  WNK4 WILD-TYPE    176    131     70
D653V6, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        0      5      4      3
  WNK4 WILD-TYPE    112     91     88    183
D653V7, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WNK4 MUTATED        0      2      6      0      1      0      3
  WNK4 WILD-TYPE     60     48     43     40     62    125     96
D653V8, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        3      3      0      6
  WNK4 WILD-TYPE    127     75     68    190
D653V9, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WNK4 MUTATED        1      4      0      0      5      0      0      1      1
  WNK4 WILD-TYPE     39     58     28     80     64     48     43     27     73
D653V10, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        0      0      0      1
  WNK4 WILD-TYPE     33     31     27     18
D653V11, multiclass
[1] "Remove cluster labels:" "WNK4 MUTATED"          
clus
  WNK4 MUTATED WNK4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-G5-6641 
"WNK4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        0      0      1      0
  WNK4 WILD-TYPE     54     10     23     22
D653V12, multiclass
[1] "Remove cluster labels:" "WNK4 MUTATED"          
clus
  WNK4 MUTATED WNK4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" "WNK4 WILD-TYPE" 
    TCGA-G5-6641 
"WNK4 WILD-TYPE" 

Clustering(654) Variable = POLM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      0      0      0
  POLM WILD-TYPE     45     58     64     43
D654V1, multiclass
[1] "Remove cluster labels:" "POLM MUTATED"          
clus
  POLM MUTATED POLM WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"POLM WILD-TYPE" "POLM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        1      0      0
  POLM WILD-TYPE     50     83     77
D654V2, multiclass
[1] "Remove cluster labels:" "POLM MUTATED"          
clus
  POLM MUTATED POLM WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"POLM WILD-TYPE" "POLM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED       10      2      0      0
  POLM WILD-TYPE    168    181    101     20
D654V3, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        3      1      7
  POLM WILD-TYPE     84     79     93
D654V4, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        1      5      5
  POLM WILD-TYPE     88    155    133
D654V5, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        6      5      0
  POLM WILD-TYPE    176    128     72
D654V6, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      6      4      1
  POLM WILD-TYPE    111     90     88    185
D654V7, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            4             88
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POLM MUTATED        0      2      7      1      0      0      2
  POLM WILD-TYPE     60     48     42     39     63    125     97
D654V8, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            7             42
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        5      2      1      4
  POLM WILD-TYPE    125     76     67    192
D654V9, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  POLM MUTATED        1      4      1      0      4      0      0      1      1
  POLM WILD-TYPE     39     58     27     80     65     48     43     27     73
D654V10, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      0      0      0
  POLM WILD-TYPE     32     31     27     19
D654V11, multiclass
[1] "Remove cluster labels:" "POLM MUTATED"          
clus
  POLM MUTATED POLM WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-G5-6641 
"POLM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      0      0      0
  POLM WILD-TYPE     53     10     24     22
D654V12, multiclass
[1] "Remove cluster labels:" "POLM MUTATED"          
clus
  POLM MUTATED POLM WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" "POLM WILD-TYPE" 
    TCGA-G5-6641 
"POLM WILD-TYPE" 

Clustering(655) Variable = RCSD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCSD1 MUTATED        1      1      0      2
  RCSD1 WILD-TYPE     45     57     64     41
D655V1, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCSD1 MUTATED        2      1      1
  RCSD1 WILD-TYPE     49     82     76
D655V2, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCSD1 MUTATED       10      4      1      1
  RCSD1 WILD-TYPE    168    179    100     19
D655V3, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCSD1 MUTATED        4      2      6
  RCSD1 WILD-TYPE     83     78     94
D655V4, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCSD1 MUTATED        2      6      5
  RCSD1 WILD-TYPE     87    154    133
D655V5, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCSD1 MUTATED        7      4      2
  RCSD1 WILD-TYPE    175    129     70
D655V6, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCSD1 MUTATED        2      5      5      4
  RCSD1 WILD-TYPE    110     91     87    182
D655V7, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RCSD1 MUTATED        0      1      5      2      3      1      4
  RCSD1 WILD-TYPE     60     49     44     38     60    124     95
D655V8, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCSD1 MUTATED        6      5      0      5
  RCSD1 WILD-TYPE    124     73     68    191
D655V9, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RCSD1 MUTATED        1      6      1      1      5      1      1      0
  RCSD1 WILD-TYPE     39     56     27     79     64     47     42     28
                 vv
clus              CLUS_9
  RCSD1 MUTATED        0
  RCSD1 WILD-TYPE     74
D655V10, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCSD1 MUTATED        0      3      0      2
  RCSD1 WILD-TYPE     33     28     27     17
D655V11, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCSD1 MUTATED        2      2      1      0
  RCSD1 WILD-TYPE     52      8     23     22
D655V12, multiclass
        clus
vv       RCSD1 MUTATED RCSD1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(656) Variable = CSNK1D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1D MUTATED        1      0      0      3
  CSNK1D WILD-TYPE     45     58     64     40
D656V1, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1D MUTATED        3      0      1
  CSNK1D WILD-TYPE     48     83     76
D656V2, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1D MUTATED       10      5      0      0
  CSNK1D WILD-TYPE    168    178    101     20
D656V3, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1             10              168
  CLUS_2              5              178
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1D MUTATED        5      3      3
  CSNK1D WILD-TYPE     82     77     97
D656V4, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1D MUTATED        2      4      8
  CSNK1D WILD-TYPE     87    156    130
D656V5, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1D MUTATED        8      4      2
  CSNK1D WILD-TYPE    174    129     70
D656V6, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1D MUTATED        2      4      5      4
  CSNK1D WILD-TYPE    110     92     87    182
D656V7, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSNK1D MUTATED        2      2      4      1      3      0      3
  CSNK1D WILD-TYPE     58     48     45     39     60    125     96
D656V8, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1D MUTATED        5      5      0      4
  CSNK1D WILD-TYPE    125     73     68    192
D656V9, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              5              125
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSNK1D MUTATED        0      6      0      0      4      1      2      0
  CSNK1D WILD-TYPE     40     56     28     80     65     47     41     28
                  vv
clus               CLUS_9
  CSNK1D MUTATED        1
  CSNK1D WILD-TYPE     73
D656V10, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              0               40
  CLUS_2              6               56
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1D MUTATED        2      0      0      2
  CSNK1D WILD-TYPE     31     31     27     17
D656V11, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1D MUTATED        3      0      0      1
  CSNK1D WILD-TYPE     51     10     24     21
D656V12, multiclass
        clus
vv       CSNK1D MUTATED CSNK1D WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(657) Variable = GPNMB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPNMB MUTATED        2      0      0      0
  GPNMB WILD-TYPE     44     58     64     43
D657V1, multiclass
[1] "Remove cluster labels:" "GPNMB MUTATED"         
clus
  GPNMB MUTATED GPNMB WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AY-4071 
"GPNMB WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPNMB MUTATED        2      0      0
  GPNMB WILD-TYPE     49     83     77
D657V2, multiclass
[1] "Remove cluster labels:" "GPNMB MUTATED"         
clus
  GPNMB MUTATED GPNMB WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" "GPNMB WILD-TYPE" 
     TCGA-AY-4071 
"GPNMB WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPNMB MUTATED        8      4      2      0
  GPNMB WILD-TYPE    170    179     99     20
D657V3, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPNMB MUTATED        3      5      4
  GPNMB WILD-TYPE     84     75     96
D657V4, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5              75
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPNMB MUTATED        0      6      6
  GPNMB WILD-TYPE     89    154    132
D657V5, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPNMB MUTATED        6      6      0
  GPNMB WILD-TYPE    176    127     72
D657V6, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPNMB MUTATED        6      1      5      2
  GPNMB WILD-TYPE    106     95     87    184
D657V7, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             6             106
  CLUS_2             1              95
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPNMB MUTATED        5      2      3      0      2      0      2
  GPNMB WILD-TYPE     55     48     46     40     61    125     97
D657V8, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             5              55
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPNMB MUTATED        5      3      3      3
  GPNMB WILD-TYPE    125     75     65    193
D657V9, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             3              65
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPNMB MUTATED        0      4      2      2      3      0      2      1
  GPNMB WILD-TYPE     40     58     26     78     66     48     41     27
                 vv
clus              CLUS_9
  GPNMB MUTATED        0
  GPNMB WILD-TYPE     74
D657V10, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPNMB MUTATED        0      0      1      2
  GPNMB WILD-TYPE     33     31     26     17
D657V11, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPNMB MUTATED        2      0      1      0
  GPNMB WILD-TYPE     52     10     23     22
D657V12, multiclass
        clus
vv       GPNMB MUTATED GPNMB WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(658) Variable = ATP11C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11C MUTATED        4      1      2      2
  ATP11C WILD-TYPE     42     57     62     41
D658V1, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              2               62
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11C MUTATED        4      3      2
  ATP11C WILD-TYPE     47     80     75
D658V2, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11C MUTATED       17      8      1      2
  ATP11C WILD-TYPE    161    175    100     18
D658V3, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1             17              161
  CLUS_2              8              175
  CLUS_3              1              100
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11C MUTATED        8      2     10
  ATP11C WILD-TYPE     79     78     90
D658V4, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              8               79
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11C MUTATED        1      7     13
  ATP11C WILD-TYPE     88    153    125
D658V5, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              1               88
  CLUS_2              7              153
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP11C MUTATED       14      5      2
  ATP11C WILD-TYPE    168    128     70
D658V6, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1             14              168
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11C MUTATED        2     11      7      9
  ATP11C WILD-TYPE    110     85     85    177
D658V7, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              2              110
  CLUS_2             11               85
  CLUS_3              7               85
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP11C MUTATED        1      6      7      3      3      2      7
  ATP11C WILD-TYPE     59     44     42     37     60    123     92
D658V8, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              1               59
  CLUS_2              6               44
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11C MUTATED       12      6      1      8
  ATP11C WILD-TYPE    118     72     67    188
D658V9, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1             12              118
  CLUS_2              6               72
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP11C MUTATED        5      5      2      5      4      1      3      0
  ATP11C WILD-TYPE     35     57     26     75     65     47     40     28
                  vv
clus               CLUS_9
  ATP11C MUTATED        2
  ATP11C WILD-TYPE     72
D658V10, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              5               35
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              5               75
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11C MUTATED        2      2      2      3
  ATP11C WILD-TYPE     31     29     25     16
D658V11, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP11C MUTATED        6      0      2      1
  ATP11C WILD-TYPE     48     10     22     21
D658V12, multiclass
        clus
vv       ATP11C MUTATED ATP11C WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(659) Variable = IQGAP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP1 MUTATED        7      0      0      4
  IQGAP1 WILD-TYPE     39     58     64     39
D659V1, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP1 MUTATED       10      0      1
  IQGAP1 WILD-TYPE     41     83     76
D659V2, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1             10               41
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP1 MUTATED       17      3      4      0
  IQGAP1 WILD-TYPE    161    180     97     20
D659V3, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              3              180
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP1 MUTATED        6      1      6
  IQGAP1 WILD-TYPE     81     79     94
D659V4, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP1 MUTATED        1      9     10
  IQGAP1 WILD-TYPE     88    151    128
D659V5, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              9              151
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IQGAP1 MUTATED       11      7      2
  IQGAP1 WILD-TYPE    171    126     70
D659V6, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP1 MUTATED        3      4      6     11
  IQGAP1 WILD-TYPE    109     92     86    175
D659V7, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              6               86
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IQGAP1 MUTATED        1      5      5      1      2      0     10
  IQGAP1 WILD-TYPE     59     45     44     39     61    125     89
D659V8, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              5               45
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP1 MUTATED       10      2      0      9
  IQGAP1 WILD-TYPE    120     76     68    187
D659V9, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IQGAP1 MUTATED        4      1      0      3     10      1      1      1
  IQGAP1 WILD-TYPE     36     61     28     77     59     47     42     27
                  vv
clus               CLUS_9
  IQGAP1 MUTATED        0
  IQGAP1 WILD-TYPE     74
D659V10, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5             10               59
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP1 MUTATED        3      0      0      2
  IQGAP1 WILD-TYPE     30     31     27     17
D659V11, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IQGAP1 MUTATED        4      0      0      1
  IQGAP1 WILD-TYPE     50     10     24     21
D659V12, multiclass
        clus
vv       IQGAP1 MUTATED IQGAP1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(660) Variable = TRMT5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT5 MUTATED        0      0      0      2
  TRMT5 WILD-TYPE     46     58     64     41
D660V1, multiclass
[1] "Remove cluster labels:" "TRMT5 MUTATED"         
clus
  TRMT5 MUTATED TRMT5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AY-4071 
"TRMT5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRMT5 MUTATED        1      0      1
  TRMT5 WILD-TYPE     50     83     76
D660V2, multiclass
[1] "Remove cluster labels:" "TRMT5 MUTATED"         
clus
  TRMT5 MUTATED TRMT5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AY-4071 
"TRMT5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT5 MUTATED        6      1      0      1
  TRMT5 WILD-TYPE    172    182    101     19
D660V3, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRMT5 MUTATED        2      2      2
  TRMT5 WILD-TYPE     85     78     98
D660V4, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRMT5 MUTATED        0      4      4
  TRMT5 WILD-TYPE     89    156    134
D660V5, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRMT5 MUTATED        5      1      2
  TRMT5 WILD-TYPE    177    132     70
D660V6, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT5 MUTATED        2      2      2      2
  TRMT5 WILD-TYPE    110     94     90    184
D660V7, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRMT5 MUTATED        2      0      2      2      1      0      1
  TRMT5 WILD-TYPE     58     50     47     38     62    125     98
D660V8, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT5 MUTATED        4      1      0      2
  TRMT5 WILD-TYPE    126     77     68    194
D660V9, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRMT5 MUTATED        1      3      0      0      1      1      1      0
  TRMT5 WILD-TYPE     39     59     28     80     68     47     42     28
                 vv
clus              CLUS_9
  TRMT5 MUTATED        0
  TRMT5 WILD-TYPE     74
D660V10, multiclass
        clus
vv       TRMT5 MUTATED TRMT5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT5 MUTATED        0      1      0      0
  TRMT5 WILD-TYPE     33     30     27     19
D660V11, multiclass
[1] "Remove cluster labels:" "TRMT5 MUTATED"         
clus
  TRMT5 MUTATED TRMT5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-G5-6641 
"TRMT5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT5 MUTATED        1      0      0      0
  TRMT5 WILD-TYPE     53     10     24     22
D660V12, multiclass
[1] "Remove cluster labels:" "TRMT5 MUTATED"         
clus
  TRMT5 MUTATED TRMT5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" "TRMT5 WILD-TYPE" 
     TCGA-G5-6641 
"TRMT5 WILD-TYPE" 

Clustering(661) Variable = MAP7D3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        2      0      0      3
  MAP7D3 WILD-TYPE     44     58     64     40
D661V1, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        2      1      2
  MAP7D3 WILD-TYPE     49     82     75
D661V2, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED       15      5      3      0
  MAP7D3 WILD-TYPE    163    178     98     20
D661V3, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        8      3      6
  MAP7D3 WILD-TYPE     79     77     94
D661V4, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              3               77
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        3      6      9
  MAP7D3 WILD-TYPE     86    154    129
D661V5, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              154
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        9      7      2
  MAP7D3 WILD-TYPE    173    126     70
D661V6, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        2      7      7      7
  MAP7D3 WILD-TYPE    110     89     85    179
D661V7, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              7               85
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP7D3 MUTATED        2      2      7      3      2      2      5
  MAP7D3 WILD-TYPE     58     48     42     37     61    123     94
D661V8, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        7      3      2     11
  MAP7D3 WILD-TYPE    123     75     66    185
D661V9, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP7D3 MUTATED        2      3      2      1      6      0      5      0
  MAP7D3 WILD-TYPE     38     59     26     79     63     48     38     28
                  vv
clus               CLUS_9
  MAP7D3 MUTATED        4
  MAP7D3 WILD-TYPE     70
D661V10, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              5               38
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        2      1      0      2
  MAP7D3 WILD-TYPE     31     30     27     17
D661V11, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        5      0      0      0
  MAP7D3 WILD-TYPE     49     10     24     22
D661V12, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(662) Variable = BFAR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFAR MUTATED        1      0      0      0
  BFAR WILD-TYPE     45     58     64     43
D662V1, multiclass
[1] "Remove cluster labels:" "BFAR MUTATED"          
clus
  BFAR MUTATED BFAR WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BFAR MUTATED        1      0      0
  BFAR WILD-TYPE     50     83     77
D662V2, multiclass
[1] "Remove cluster labels:" "BFAR MUTATED"          
clus
  BFAR MUTATED BFAR WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFAR MUTATED        6      2      1      0
  BFAR WILD-TYPE    172    181    100     20
D662V3, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BFAR MUTATED        4      1      3
  BFAR WILD-TYPE     83     79     97
D662V4, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BFAR MUTATED        0      1      5
  BFAR WILD-TYPE     89    159    133
D662V5, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BFAR MUTATED        3      2      1
  BFAR WILD-TYPE    179    131     71
D662V6, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFAR MUTATED        1      3      3      2
  BFAR WILD-TYPE    111     93     89    184
D662V7, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BFAR MUTATED        0      1      2      3      1      1      1
  BFAR WILD-TYPE     60     49     47     37     62    124     98
D662V8, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFAR MUTATED        4      2      1      2
  BFAR WILD-TYPE    126     76     67    194
D662V9, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BFAR MUTATED        2      3      0      0      0      0      2      1      1
  BFAR WILD-TYPE     38     59     28     80     69     48     41     27     73
D662V10, multiclass
        clus
vv       BFAR MUTATED BFAR WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFAR MUTATED        1      0      0      1
  BFAR WILD-TYPE     32     31     27     18
D662V11, multiclass
[1] "Remove cluster labels:" "BFAR MUTATED"          
clus
  BFAR MUTATED BFAR WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6719 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFAR MUTATED        2      0      0      0
  BFAR WILD-TYPE     52     10     24     22
D662V12, multiclass
[1] "Remove cluster labels:" "BFAR MUTATED"          
clus
  BFAR MUTATED BFAR WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6719 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" "BFAR WILD-TYPE" 

Clustering(663) Variable = KCTD16 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD16 MUTATED        1      1      0      1
  KCTD16 WILD-TYPE     45     57     64     42
D663V1, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD16 MUTATED        1      1      1
  KCTD16 WILD-TYPE     50     82     76
D663V2, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD16 MUTATED        4      7      2      1
  KCTD16 WILD-TYPE    174    176     99     19
D663V3, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              7              176
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD16 MUTATED        5      1      5
  KCTD16 WILD-TYPE     82     79     95
D663V4, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD16 MUTATED        0      7      3
  KCTD16 WILD-TYPE     89    153    135
D663V5, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD16 MUTATED        3      5      2
  KCTD16 WILD-TYPE    179    128     70
D663V6, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD16 MUTATED        3      5      3      3
  KCTD16 WILD-TYPE    109     91     89    183
D663V7, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCTD16 MUTATED        2      2      4      3      1      1      1
  KCTD16 WILD-TYPE     58     48     45     37     62    124     98
D663V8, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              3               37
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD16 MUTATED        5      4      2      3
  KCTD16 WILD-TYPE    125     74     66    193
D663V9, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCTD16 MUTATED        1      2      2      2      4      1      2      0
  KCTD16 WILD-TYPE     39     60     26     78     65     47     41     28
                  vv
clus               CLUS_9
  KCTD16 MUTATED        0
  KCTD16 WILD-TYPE     74
D663V10, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD16 MUTATED        2      1      2      2
  KCTD16 WILD-TYPE     31     30     25     17
D663V11, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD16 MUTATED        3      0      2      2
  KCTD16 WILD-TYPE     51     10     22     20
D663V12, multiclass
        clus
vv       KCTD16 MUTATED KCTD16 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(664) Variable = MFN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        1      0      0      1
  MFN1 WILD-TYPE     45     58     64     42
D664V1, multiclass
[1] "Remove cluster labels:" "MFN1 MUTATED"          
clus
  MFN1 MUTATED MFN1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AY-4071 
"MFN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFN1 MUTATED        1      0      1
  MFN1 WILD-TYPE     50     83     76
D664V2, multiclass
[1] "Remove cluster labels:" "MFN1 MUTATED"          
clus
  MFN1 MUTATED MFN1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" "MFN1 WILD-TYPE" 
    TCGA-AY-4071 
"MFN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        8      4      2      0
  MFN1 WILD-TYPE    170    179     99     20
D664V3, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFN1 MUTATED        2      4      6
  MFN1 WILD-TYPE     85     76     94
D664V4, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            4             76
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFN1 MUTATED        0      5      7
  MFN1 WILD-TYPE     89    155    131
D664V5, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFN1 MUTATED        6      6      0
  MFN1 WILD-TYPE    176    127     72
D664V6, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        3      3      6      2
  MFN1 WILD-TYPE    109     93     86    184
D664V7, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            6             86
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFN1 MUTATED        4      1      7      0      1      0      1
  MFN1 WILD-TYPE     56     49     42     40     62    125     98
D664V8, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        7      4      0      3
  MFN1 WILD-TYPE    123     74     68    193
D664V9, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MFN1 MUTATED        2      5      1      1      4      1      0      0      0
  MFN1 WILD-TYPE     38     57     27     79     65     47     43     28     74
D664V10, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        2      1      0      3
  MFN1 WILD-TYPE     31     30     27     16
D664V11, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        3      1      2      0
  MFN1 WILD-TYPE     51      9     22     22
D664V12, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(665) Variable = ELF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        1      0      3      2
  ELF3 WILD-TYPE     45     58     61     41
D665V1, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            3             61
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        1      0      5
  ELF3 WILD-TYPE     50     83     72
D665V2, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        5      2      3      0
  ELF3 WILD-TYPE    173    181     98     20
D665V3, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        0      0      4
  ELF3 WILD-TYPE     87     80     96
D665V4, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        3      1      4
  ELF3 WILD-TYPE     86    159    134
D665V5, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        6      1      1
  ELF3 WILD-TYPE    176    132     71
D665V6, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        0      5      2      3
  ELF3 WILD-TYPE    112     91     90    183
D665V7, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ELF3 MUTATED        1      2      1      1      0      0      5
  ELF3 WILD-TYPE     59     48     48     39     63    125     94
D665V8, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        2      0      3      5
  ELF3 WILD-TYPE    128     78     65    191
D665V9, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            3             65
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ELF3 MUTATED        0      0      2      2      1      0      2      1      2
  ELF3 WILD-TYPE     40     62     26     78     68     48     41     27     72
D665V10, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        0      0      2      0
  ELF3 WILD-TYPE     33     31     25     19
D665V11, multiclass
[1] "Remove cluster labels:" "ELF3 MUTATED"          
clus
  ELF3 MUTATED ELF3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        0      0      2      0
  ELF3 WILD-TYPE     54     10     22     22
D665V12, multiclass
[1] "Remove cluster labels:" "ELF3 MUTATED"          
clus
  ELF3 MUTATED ELF3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 

Clustering(666) Variable = TAPBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPBP MUTATED        1      0      1      2
  TAPBP WILD-TYPE     45     58     63     41
D666V1, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAPBP MUTATED        2      0      2
  TAPBP WILD-TYPE     49     83     75
D666V2, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPBP MUTATED        3      1      1      0
  TAPBP WILD-TYPE    175    182    100     20
D666V3, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAPBP MUTATED        0      1      0
  TAPBP WILD-TYPE     87     79    100
D666V4, multiclass
[1] "Remove cluster labels:" "TAPBP MUTATED"         
clus
  TAPBP MUTATED TAPBP WILD-TYPE 
              1             266 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AA-3663      TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AD-6890      TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AF-2693      TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CK-4948      TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CK-5913      TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CK-6746      TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CL-5917      TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-5861      TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"TAPBP WILD-TYPE" "TAPBP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAPBP MUTATED        1      1      2
  TAPBP WILD-TYPE     88    159    136
D666V5, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAPBP MUTATED        3      0      1
  TAPBP WILD-TYPE    179    133     71
D666V6, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPBP MUTATED        2      0      0      3
  TAPBP WILD-TYPE    110     96     92    183
D666V7, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              96
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAPBP MUTATED        1      0      0      0      0      1      3
  TAPBP WILD-TYPE     59     50     49     40     63    124     96
D666V8, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPBP MUTATED        1      0      0      4
  TAPBP WILD-TYPE    129     78     68    192
D666V9, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             1             129
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TAPBP MUTATED        0      0      1      1      1      1      0      1
  TAPBP WILD-TYPE     40     62     27     79     68     47     43     27
                 vv
clus              CLUS_9
  TAPBP MUTATED        0
  TAPBP WILD-TYPE     74
D666V10, multiclass
        clus
vv       TAPBP MUTATED TAPBP WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPBP MUTATED        0      0      0      0
  TAPBP WILD-TYPE     33     31     27     19
D666V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPBP MUTATED        0      0      0      0
  TAPBP WILD-TYPE     54     10     24     22
D666V12, multiclass

Clustering(667) Variable = RBM19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM19 MUTATED        4      0      0      2
  RBM19 WILD-TYPE     42     58     64     41
D667V1, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM19 MUTATED        6      0      0
  RBM19 WILD-TYPE     45     83     77
D667V2, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM19 MUTATED       14      5      2      0
  RBM19 WILD-TYPE    164    178     99     20
D667V3, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM19 MUTATED        5      5      5
  RBM19 WILD-TYPE     82     75     95
D667V4, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             5              75
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM19 MUTATED        3      2     12
  RBM19 WILD-TYPE     86    158    126
D667V5, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM19 MUTATED       11      3      3
  RBM19 WILD-TYPE    171    130     69
D667V6, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM19 MUTATED        6      3      6      6
  RBM19 WILD-TYPE    106     93     86    180
D667V7, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM19 MUTATED        5      4      5      0      1      0      6
  RBM19 WILD-TYPE     55     46     44     40     62    125     93
D667V8, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM19 MUTATED        8      4      1      7
  RBM19 WILD-TYPE    122     74     67    189
D667V9, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM19 MUTATED        3      5      0      2      6      1      1      1
  RBM19 WILD-TYPE     37     57     28     78     63     47     42     27
                 vv
clus              CLUS_9
  RBM19 MUTATED        1
  RBM19 WILD-TYPE     73
D667V10, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM19 MUTATED        3      0      0      2
  RBM19 WILD-TYPE     30     31     27     17
D667V11, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM19 MUTATED        5      0      0      0
  RBM19 WILD-TYPE     49     10     24     22
D667V12, multiclass
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(668) Variable = MSH4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH4 MUTATED        1      0      1      2
  MSH4 WILD-TYPE     45     58     63     41
D668V1, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH4 MUTATED        0      2      2
  MSH4 WILD-TYPE     51     81     75
D668V2, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH4 MUTATED        8      3      4      0
  MSH4 WILD-TYPE    170    180     97     20
D668V3, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            3            180
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH4 MUTATED        6      2      3
  MSH4 WILD-TYPE     81     78     97
D668V4, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH4 MUTATED        2      3      5
  MSH4 WILD-TYPE     87    157    133
D668V5, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH4 MUTATED        4      5      1
  MSH4 WILD-TYPE    178    128     71
D668V6, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH4 MUTATED        1      4      4      6
  MSH4 WILD-TYPE    111     92     88    180
D668V7, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            4             88
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MSH4 MUTATED        1      1      2      1      4      2      4
  MSH4 WILD-TYPE     59     49     47     39     59    123     95
D668V8, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH4 MUTATED        4      3      1      7
  MSH4 WILD-TYPE    126     75     67    189
D668V9, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MSH4 MUTATED        0      3      2      5      1      0      1      0      3
  MSH4 WILD-TYPE     40     59     26     75     68     48     42     28     71
D668V10, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            5             75
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH4 MUTATED        0      1      1      1
  MSH4 WILD-TYPE     33     30     26     18
D668V11, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH4 MUTATED        0      1      2      0
  MSH4 WILD-TYPE     54      9     22     22
D668V12, multiclass
        clus
vv       MSH4 MUTATED MSH4 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(669) Variable = ADAMTS4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS4 MUTATED        0      1      0      2
  ADAMTS4 WILD-TYPE     46     57     64     41
D669V1, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ADAMTS4 MUTATED        0      2      1
  ADAMTS4 WILD-TYPE     51     81     76
D669V2, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS4 MUTATED       14      2      2      0
  ADAMTS4 WILD-TYPE    164    181     99     20
D669V3, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1              14               164
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ADAMTS4 MUTATED        2      1     12
  ADAMTS4 WILD-TYPE     85     79     88
D669V4, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3              12                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ADAMTS4 MUTATED        1      6      8
  ADAMTS4 WILD-TYPE     88    154    130
D669V5, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ADAMTS4 MUTATED        6      8      1
  ADAMTS4 WILD-TYPE    176    125     71
D669V6, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               8               125
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS4 MUTATED        3      9      3      3
  ADAMTS4 WILD-TYPE    109     87     89    183
D669V7, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               9                87
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAMTS4 MUTATED        2      3     10      0      1      1      1
  ADAMTS4 WILD-TYPE     58     47     39     40     62    124     98
D669V8, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3              10                39
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS4 MUTATED       13      1      0      4
  ADAMTS4 WILD-TYPE    117     77     68    192
D669V9, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1              13               117
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAMTS4 MUTATED        1      4      3      1      6      2      0      0
  ADAMTS4 WILD-TYPE     39     58     25     79     63     46     43     28
                   vv
clus                CLUS_9
  ADAMTS4 MUTATED        1
  ADAMTS4 WILD-TYPE     73
D669V10, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               3                25
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS4 MUTATED        2      0      0      2
  ADAMTS4 WILD-TYPE     31     31     27     17
D669V11, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS4 MUTATED        1      0      2      1
  ADAMTS4 WILD-TYPE     53     10     22     21
D669V12, multiclass
        clus
vv       ADAMTS4 MUTATED ADAMTS4 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(670) Variable = ASPM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED        6      2      0      6
  ASPM WILD-TYPE     40     56     64     37
D670V1, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            6             40
  CLUS_2            2             56
  CLUS_3            0             64
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPM MUTATED        9      4      1
  ASPM WILD-TYPE     42     79     76
D670V2, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            9             42
  CLUS_2            4             79
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED       36      5      4      2
  ASPM WILD-TYPE    142    178     97     18
D670V3, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1           36            142
  CLUS_2            5            178
  CLUS_3            4             97
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPM MUTATED       11      6     16
  ASPM WILD-TYPE     76     74     84
D670V4, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1           11             76
  CLUS_2            6             74
  CLUS_3           16             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPM MUTATED        4     15     20
  ASPM WILD-TYPE     85    145    118
D670V5, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            4             85
  CLUS_2           15            145
  CLUS_3           20            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPM MUTATED       19     15      5
  ASPM WILD-TYPE    163    118     67
D670V6, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1           19            163
  CLUS_2           15            118
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED        8     12     12     15
  ASPM WILD-TYPE    104     84     80    171
D670V7, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            8            104
  CLUS_2           12             84
  CLUS_3           12             80
  CLUS_4           15            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASPM MUTATED        8      3     14      1      6      3     12
  ASPM WILD-TYPE     52     47     35     39     57    122     87
D670V8, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            8             52
  CLUS_2            3             47
  CLUS_3           14             35
  CLUS_4            1             39
  CLUS_5            6             57
  CLUS_6            3            122
  CLUS_7           12             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED       13     10      4     17
  ASPM WILD-TYPE    117     68     64    179
D670V9, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1           13            117
  CLUS_2           10             68
  CLUS_3            4             64
  CLUS_4           17            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ASPM MUTATED        2      9      1      6     15      4      4      0      3
  ASPM WILD-TYPE     38     53     27     74     54     44     39     28     71
D670V10, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            2             38
  CLUS_2            9             53
  CLUS_3            1             27
  CLUS_4            6             74
  CLUS_5           15             54
  CLUS_6            4             44
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED        4      2      3      4
  ASPM WILD-TYPE     29     29     24     15
D670V11, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            4             29
  CLUS_2            2             29
  CLUS_3            3             24
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPM MUTATED        8      1      3      1
  ASPM WILD-TYPE     46      9     21     21
D670V12, multiclass
        clus
vv       ASPM MUTATED ASPM WILD-TYPE
  CLUS_1            8             46
  CLUS_2            1              9
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(671) Variable = ZNF180 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF180 MUTATED        4      0      0      4
  ZNF180 WILD-TYPE     42     58     64     39
D671V1, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF180 MUTATED        4      2      2
  ZNF180 WILD-TYPE     47     81     75
D671V2, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF180 MUTATED       12      2      3      1
  ZNF180 WILD-TYPE    166    181     98     19
D671V3, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF180 MUTATED        5      3      3
  ZNF180 WILD-TYPE     82     77     97
D671V4, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF180 MUTATED        3      6      4
  ZNF180 WILD-TYPE     86    154    134
D671V5, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              154
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF180 MUTATED        5      4      4
  ZNF180 WILD-TYPE    177    129     68
D671V6, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF180 MUTATED        3      4      2      9
  ZNF180 WILD-TYPE    109     92     90    177
D671V7, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF180 MUTATED        2      2      1      3      2      2      6
  ZNF180 WILD-TYPE     58     48     48     37     61    123     93
D671V8, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF180 MUTATED        6      1      2      8
  ZNF180 WILD-TYPE    124     77     66    188
D671V9, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF180 MUTATED        3      1      2      3      3      0      3      1
  ZNF180 WILD-TYPE     37     61     26     77     66     48     40     27
                  vv
clus               CLUS_9
  ZNF180 MUTATED        1
  ZNF180 WILD-TYPE     73
D671V10, multiclass
        clus
vv       ZNF180 MUTATED ZNF180 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              3               40
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF180 MUTATED        0      1      1      0
  ZNF180 WILD-TYPE     33     30     26     19
D671V11, multiclass
[1] "Remove cluster labels:" "ZNF180 MUTATED"        
clus
  ZNF180 MUTATED ZNF180 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AG-3731 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF180 MUTATED        1      0      1      0
  ZNF180 WILD-TYPE     53     10     23     22
D671V12, multiclass
[1] "Remove cluster labels:" "ZNF180 MUTATED"        
clus
  ZNF180 MUTATED ZNF180 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AG-3731 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" "ZNF180 WILD-TYPE" 

Clustering(672) Variable = HYDIN MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HYDIN MUTATED       11      3      4     10
  HYDIN WILD-TYPE     35     55     60     33
D672V1, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            11              35
  CLUS_2             3              55
  CLUS_3             4              60
  CLUS_4            10              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HYDIN MUTATED       14      6      8
  HYDIN WILD-TYPE     37     77     69
D672V2, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            14              37
  CLUS_2             6              77
  CLUS_3             8              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HYDIN MUTATED       56     22     10      3
  HYDIN WILD-TYPE    122    161     91     17
D672V3, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            56             122
  CLUS_2            22             161
  CLUS_3            10              91
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HYDIN MUTATED       14     13     36
  HYDIN WILD-TYPE     73     67     64
D672V4, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            14              73
  CLUS_2            13              67
  CLUS_3            36              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HYDIN MUTATED       18     29     33
  HYDIN WILD-TYPE     71    131    105
D672V5, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            18              71
  CLUS_2            29             131
  CLUS_3            33             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HYDIN MUTATED       38     27     15
  HYDIN WILD-TYPE    144    106     57
D672V6, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            38             144
  CLUS_2            27             106
  CLUS_3            15              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HYDIN MUTATED       18     25     22     28
  HYDIN WILD-TYPE     94     71     70    158
D672V7, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            18              94
  CLUS_2            25              71
  CLUS_3            22              70
  CLUS_4            28             158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HYDIN MUTATED       15     14     22      3      8      9     22
  HYDIN WILD-TYPE     45     36     27     37     55    116     77
D672V8, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            15              45
  CLUS_2            14              36
  CLUS_3            22              27
  CLUS_4             3              37
  CLUS_5             8              55
  CLUS_6             9             116
  CLUS_7            22              77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HYDIN MUTATED       35     13      8     35
  HYDIN WILD-TYPE     95     65     60    161
D672V9, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            35              95
  CLUS_2            13              65
  CLUS_3             8              60
  CLUS_4            35             161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HYDIN MUTATED       10     12      7      9     24      6     10      5
  HYDIN WILD-TYPE     30     50     21     71     45     42     33     23
                 vv
clus              CLUS_9
  HYDIN MUTATED        8
  HYDIN WILD-TYPE     66
D672V10, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            10              30
  CLUS_2            12              50
  CLUS_3             7              21
  CLUS_4             9              71
  CLUS_5            24              45
  CLUS_6             6              42
  CLUS_7            10              33
  CLUS_8             5              23
  CLUS_9             8              66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HYDIN MUTATED        6      3      5      9
  HYDIN WILD-TYPE     27     28     22     10
D672V11, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1             6              27
  CLUS_2             3              28
  CLUS_3             5              22
  CLUS_4             9              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HYDIN MUTATED       13      0      5      5
  HYDIN WILD-TYPE     41     10     19     17
D672V12, multiclass
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  CLUS_1            13              41
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             5              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(673) Variable = NCOA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        0      1      1      4
  NCOA3 WILD-TYPE     46     57     63     39
D673V1, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        3      1      2
  NCOA3 WILD-TYPE     48     82     75
D673V2, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED       10      4      2      1
  NCOA3 WILD-TYPE    168    179     99     19
D673V3, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        4      3      3
  NCOA3 WILD-TYPE     83     77     97
D673V4, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        2      6      5
  NCOA3 WILD-TYPE     87    154    133
D673V5, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA3 MUTATED        5      7      1
  NCOA3 WILD-TYPE    177    126     71
D673V6, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        5      2      4      6
  NCOA3 WILD-TYPE    107     94     88    180
D673V7, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOA3 MUTATED        5      0      4      0      2      2      4
  NCOA3 WILD-TYPE     55     50     45     40     61    123     95
D673V8, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        5      3      2      6
  NCOA3 WILD-TYPE    125     75     66    190
D673V9, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NCOA3 MUTATED        0      4      1      2      5      1      1      2
  NCOA3 WILD-TYPE     40     58     27     78     64     47     42     26
                 vv
clus              CLUS_9
  NCOA3 MUTATED        0
  NCOA3 WILD-TYPE     74
D673V10, multiclass
        clus
vv       NCOA3 MUTATED NCOA3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        0      1      0      0
  NCOA3 WILD-TYPE     33     30     27     19
D673V11, multiclass
[1] "Remove cluster labels:" "NCOA3 MUTATED"         
clus
  NCOA3 MUTATED NCOA3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-G5-6641 
"NCOA3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA3 MUTATED        0      0      0      1
  NCOA3 WILD-TYPE     54     10     24     21
D673V12, multiclass
[1] "Remove cluster labels:" "NCOA3 MUTATED"         
clus
  NCOA3 MUTATED NCOA3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" "NCOA3 WILD-TYPE" 
     TCGA-G5-6641 
"NCOA3 WILD-TYPE" 

Clustering(674) Variable = ARMCX5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX5 MUTATED        2      0      0      1
  ARMCX5 WILD-TYPE     44     58     64     42
D674V1, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX5 MUTATED        3      0      0
  ARMCX5 WILD-TYPE     48     83     77
D674V2, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX5 MUTATED        4      1      1      1
  ARMCX5 WILD-TYPE    174    182    100     19
D674V3, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX5 MUTATED        0      1      3
  ARMCX5 WILD-TYPE     87     79     97
D674V4, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX5 MUTATED        1      2      4
  ARMCX5 WILD-TYPE     88    158    134
D674V5, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX5 MUTATED        4      1      2
  ARMCX5 WILD-TYPE    178    132     70
D674V6, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX5 MUTATED        1      2      1      3
  ARMCX5 WILD-TYPE    111     94     91    183
D674V7, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARMCX5 MUTATED        0      2      2      0      0      0      3
  ARMCX5 WILD-TYPE     60     48     47     40     63    125     96
D674V8, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX5 MUTATED        3      0      0      4
  ARMCX5 WILD-TYPE    127     78     68    192
D674V9, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARMCX5 MUTATED        1      0      1      0      4      1      0      0
  ARMCX5 WILD-TYPE     39     62     27     80     65     47     43     28
                  vv
clus               CLUS_9
  ARMCX5 MUTATED        0
  ARMCX5 WILD-TYPE     74
D674V10, multiclass
        clus
vv       ARMCX5 MUTATED ARMCX5 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX5 MUTATED        1      0      0      1
  ARMCX5 WILD-TYPE     32     31     27     18
D674V11, multiclass
[1] "Remove cluster labels:" "ARMCX5 MUTATED"        
clus
  ARMCX5 MUTATED ARMCX5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX5 MUTATED        1      0      1      0
  ARMCX5 WILD-TYPE     53     10     23     22
D674V12, multiclass
[1] "Remove cluster labels:" "ARMCX5 MUTATED"        
clus
  ARMCX5 MUTATED ARMCX5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" "ARMCX5 WILD-TYPE" 

Clustering(675) Variable = YLPM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        2      1      1      5
  YLPM1 WILD-TYPE     44     57     63     38
D675V1, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED        2      2      5
  YLPM1 WILD-TYPE     49     81     72
D675V2, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             5              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED       21      1      1      0
  YLPM1 WILD-TYPE    157    182    100     20
D675V3, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED        5      0      9
  YLPM1 WILD-TYPE     82     80     91
D675V4, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED        4      6      8
  YLPM1 WILD-TYPE     85    154    130
D675V5, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED       10      5      3
  YLPM1 WILD-TYPE    172    128     69
D675V6, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        0      9      5     10
  YLPM1 WILD-TYPE    112     87     87    176
D675V7, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             9              87
  CLUS_3             5              87
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YLPM1 MUTATED        1      1     11      1      1      2      7
  YLPM1 WILD-TYPE     59     49     38     39     62    123     92
D675V8, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3            11              38
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED       11      3      0     10
  YLPM1 WILD-TYPE    119     75     68    186
D675V9, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  YLPM1 MUTATED        2      4      2      2      9      0      1      2
  YLPM1 WILD-TYPE     38     58     26     78     60     48     42     26
                 vv
clus              CLUS_9
  YLPM1 MUTATED        2
  YLPM1 WILD-TYPE     72
D675V10, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             9              60
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        1      0      0      2
  YLPM1 WILD-TYPE     32     31     27     17
D675V11, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        2      0      1      0
  YLPM1 WILD-TYPE     52     10     23     22
D675V12, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(676) Variable = PLEK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEK MUTATED        1      1      0      5
  PLEK WILD-TYPE     45     57     64     38
D676V1, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEK MUTATED        4      2      1
  PLEK WILD-TYPE     47     81     76
D676V2, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEK MUTATED       10      2      1      0
  PLEK WILD-TYPE    168    181    100     20
D676V3, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEK MUTATED        2      1      4
  PLEK WILD-TYPE     85     79     96
D676V4, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEK MUTATED        1      4      6
  PLEK WILD-TYPE     88    156    132
D676V5, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEK MUTATED        6      4      1
  PLEK WILD-TYPE    176    129     71
D676V6, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            6            176
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEK MUTATED        1      4      2      7
  PLEK WILD-TYPE    111     92     90    179
D676V7, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEK MUTATED        0      3      2      1      1      1      6
  PLEK WILD-TYPE     60     47     47     39     62    124     93
D676V8, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEK MUTATED        3      1      0      9
  PLEK WILD-TYPE    127     77     68    187
D676V9, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PLEK MUTATED        0      2      3      1      4      1      0      0      2
  PLEK WILD-TYPE     40     60     25     79     65     47     43     28     72
D676V10, multiclass
        clus
vv       PLEK MUTATED PLEK WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEK MUTATED        0      0      0      2
  PLEK WILD-TYPE     33     31     27     17
D676V11, multiclass
[1] "Remove cluster labels:" "PLEK MUTATED"          
clus
  PLEK MUTATED PLEK WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEK MUTATED        1      0      1      0
  PLEK WILD-TYPE     53     10     23     22
D676V12, multiclass
[1] "Remove cluster labels:" "PLEK MUTATED"          
clus
  PLEK MUTATED PLEK WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" "PLEK WILD-TYPE" 

Clustering(677) Variable = MST4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST4 MUTATED        0      0      0      1
  MST4 WILD-TYPE     46     58     64     42
D677V1, multiclass
[1] "Remove cluster labels:" "MST4 MUTATED"          
clus
  MST4 MUTATED MST4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST4 MUTATED        1      0      0
  MST4 WILD-TYPE     50     83     77
D677V2, multiclass
[1] "Remove cluster labels:" "MST4 MUTATED"          
clus
  MST4 MUTATED MST4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" "MST4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MST4 WILD-TYPE" "MST4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST4 MUTATED        4      3      1      0
  MST4 WILD-TYPE    174    180    100     20
D677V3, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST4 MUTATED        1      1      5
  MST4 WILD-TYPE     86     79     95
D677V4, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST4 MUTATED        1      2      3
  MST4 WILD-TYPE     88    158    135
D677V5, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MST4 MUTATED        4      0      2
  MST4 WILD-TYPE    178    133     70
D677V6, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST4 MUTATED        1      4      2      1
  MST4 WILD-TYPE    111     92     90    185
D677V7, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MST4 MUTATED        0      3      3      0      1      0      1
  MST4 WILD-TYPE     60     47     46     40     62    125     98
D677V8, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST4 MUTATED        6      1      0      0
  MST4 WILD-TYPE    124     77     68    196
D677V9, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MST4 MUTATED        1      2      1      1      1      0      1      0      0
  MST4 WILD-TYPE     39     60     27     79     68     48     42     28     74
D677V10, multiclass
        clus
vv       MST4 MUTATED MST4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST4 MUTATED        0      0      0      0
  MST4 WILD-TYPE     33     31     27     19
D677V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST4 MUTATED        0      0      0      0
  MST4 WILD-TYPE     54     10     24     22
D677V12, multiclass

Clustering(678) Variable = MYL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYL1 MUTATED        0      0      1      0
  MYL1 WILD-TYPE     46     58     63     43
D678V1, multiclass
[1] "Remove cluster labels:" "MYL1 MUTATED"          
clus
  MYL1 MUTATED MYL1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYL1 MUTATED        0      0      1
  MYL1 WILD-TYPE     51     83     76
D678V2, multiclass
[1] "Remove cluster labels:" "MYL1 MUTATED"          
clus
  MYL1 MUTATED MYL1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYL1 MUTATED        1      5      1      1
  MYL1 WILD-TYPE    177    178    100     19
D678V3, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            1            177
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYL1 MUTATED        2      4      1
  MYL1 WILD-TYPE     85     76     99
D678V4, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            4             76
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYL1 MUTATED        1      2      3
  MYL1 WILD-TYPE     88    158    135
D678V5, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYL1 MUTATED        3      1      2
  MYL1 WILD-TYPE    179    132     70
D678V6, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYL1 MUTATED        5      1      1      1
  MYL1 WILD-TYPE    107     95     91    185
D678V7, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYL1 MUTATED        3      1      1      1      1      0      1
  MYL1 WILD-TYPE     57     49     48     39     62    125     98
D678V8, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYL1 MUTATED        5      2      0      1
  MYL1 WILD-TYPE    125     76     68    195
D678V9, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MYL1 MUTATED        1      2      1      2      0      1      0      0      1
  MYL1 WILD-TYPE     39     60     27     78     69     47     43     28     73
D678V10, multiclass
        clus
vv       MYL1 MUTATED MYL1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            0             69
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYL1 MUTATED        0      0      0      1
  MYL1 WILD-TYPE     33     31     27     18
D678V11, multiclass
[1] "Remove cluster labels:" "MYL1 MUTATED"          
clus
  MYL1 MUTATED MYL1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-6748     TCGA-CL-5918 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-G5-6641 
"MYL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYL1 MUTATED        1      0      0      0
  MYL1 WILD-TYPE     53     10     24     22
D678V12, multiclass
[1] "Remove cluster labels:" "MYL1 MUTATED"          
clus
  MYL1 MUTATED MYL1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-6748     TCGA-CL-5918 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" "MYL1 WILD-TYPE" 
    TCGA-G5-6641 
"MYL1 WILD-TYPE" 

Clustering(679) Variable = ANKHD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKHD1 MUTATED        3      2      0      4
  ANKHD1 WILD-TYPE     43     56     64     39
D679V1, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKHD1 MUTATED        3      4      2
  ANKHD1 WILD-TYPE     48     79     75
D679V2, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              4               79
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKHD1 MUTATED       24      8      2      0
  ANKHD1 WILD-TYPE    154    175     99     20
D679V3, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1             24              154
  CLUS_2              8              175
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKHD1 MUTATED       12      6      7
  ANKHD1 WILD-TYPE     75     74     93
D679V4, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1             12               75
  CLUS_2              6               74
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKHD1 MUTATED        4     11     14
  ANKHD1 WILD-TYPE     85    149    124
D679V5, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             11              149
  CLUS_3             14              124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKHD1 MUTATED       16      9      4
  ANKHD1 WILD-TYPE    166    124     68
D679V6, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1             16              166
  CLUS_2              9              124
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKHD1 MUTATED        5      9     10     10
  ANKHD1 WILD-TYPE    107     87     82    176
D679V7, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              9               87
  CLUS_3             10               82
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKHD1 MUTATED        4      9      8      0      4      3      6
  ANKHD1 WILD-TYPE     56     41     41     40     59    122     93
D679V8, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              9               41
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              4               59
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKHD1 MUTATED       14      5      3     11
  ANKHD1 WILD-TYPE    116     73     65    185
D679V9, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              5               73
  CLUS_3              3               65
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKHD1 MUTATED        3      6      4      6      8      1      2      0
  ANKHD1 WILD-TYPE     37     56     24     74     61     47     41     28
                  vv
clus               CLUS_9
  ANKHD1 MUTATED        3
  ANKHD1 WILD-TYPE     71
D679V10, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              6               56
  CLUS_3              4               24
  CLUS_4              6               74
  CLUS_5              8               61
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKHD1 MUTATED        3      2      0      6
  ANKHD1 WILD-TYPE     30     29     27     13
D679V11, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              6               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKHD1 MUTATED        6      0      3      2
  ANKHD1 WILD-TYPE     48     10     21     20
D679V12, multiclass
        clus
vv       ANKHD1 MUTATED ANKHD1 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(680) Variable = CEPT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEPT1 MUTATED        1      0      0      0
  CEPT1 WILD-TYPE     45     58     64     43
D680V1, multiclass
[1] "Remove cluster labels:" "CEPT1 MUTATED"         
clus
  CEPT1 MUTATED CEPT1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEPT1 MUTATED        1      0      0
  CEPT1 WILD-TYPE     50     83     77
D680V2, multiclass
[1] "Remove cluster labels:" "CEPT1 MUTATED"         
clus
  CEPT1 MUTATED CEPT1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CEPT1 WILD-TYPE" "CEPT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEPT1 MUTATED        5      0      1      0
  CEPT1 WILD-TYPE    173    183    100     20
D680V3, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEPT1 MUTATED        3      0      2
  CEPT1 WILD-TYPE     84     80     98
D680V4, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEPT1 MUTATED        0      1      4
  CEPT1 WILD-TYPE     89    159    134
D680V5, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEPT1 MUTATED        4      1      0
  CEPT1 WILD-TYPE    178    132     72
D680V6, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEPT1 MUTATED        1      1      3      1
  CEPT1 WILD-TYPE    111     95     89    185
D680V7, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEPT1 MUTATED        1      0      3      0      1      0      1
  CEPT1 WILD-TYPE     59     50     46     40     62    125     98
D680V8, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEPT1 MUTATED        1      2      1      2
  CEPT1 WILD-TYPE    129     76     67    194
D680V9, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEPT1 MUTATED        0      2      0      0      1      0      2      1
  CEPT1 WILD-TYPE     40     60     28     80     68     48     41     27
                 vv
clus              CLUS_9
  CEPT1 MUTATED        0
  CEPT1 WILD-TYPE     74
D680V10, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEPT1 MUTATED        0      0      1      2
  CEPT1 WILD-TYPE     33     31     26     17
D680V11, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEPT1 MUTATED        1      0      1      1
  CEPT1 WILD-TYPE     53     10     23     21
D680V12, multiclass
        clus
vv       CEPT1 MUTATED CEPT1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(681) Variable = TNFRSF9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        0      0      0      2
  TNFRSF9 WILD-TYPE     46     58     64     41
D681V1, multiclass
[1] "Remove cluster labels:" "TNFRSF9 MUTATED"       
clus
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AY-4071 
"TNFRSF9 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        1      0      1
  TNFRSF9 WILD-TYPE     50     83     76
D681V2, multiclass
[1] "Remove cluster labels:" "TNFRSF9 MUTATED"       
clus
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AY-4071 
"TNFRSF9 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        7      3      0      0
  TNFRSF9 WILD-TYPE    171    180    101     20
D681V3, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        2      2      3
  TNFRSF9 WILD-TYPE     85     78     97
D681V4, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        4      3      3
  TNFRSF9 WILD-TYPE     85    157    135
D681V5, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               3               157
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        4      5      1
  TNFRSF9 WILD-TYPE    178    128     71
D681V6, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        2      2      3      3
  TNFRSF9 WILD-TYPE    110     94     89    183
D681V7, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNFRSF9 MUTATED        3      0      2      1      2      1      1
  TNFRSF9 WILD-TYPE     57     50     47     39     61    124     98
D681V8, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        3      2      0      5
  TNFRSF9 WILD-TYPE    127     76     68    191
D681V9, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNFRSF9 MUTATED        1      2      0      1      3      1      0      1
  TNFRSF9 WILD-TYPE     39     60     28     79     66     47     43     27
                   vv
clus                CLUS_9
  TNFRSF9 MUTATED        1
  TNFRSF9 WILD-TYPE     73
D681V10, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        0      1      0      1
  TNFRSF9 WILD-TYPE     33     30     27     18
D681V11, multiclass
[1] "Remove cluster labels:" "TNFRSF9 MUTATED"       
clus
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        1      0      1      0
  TNFRSF9 WILD-TYPE     53     10     23     22
D681V12, multiclass
[1] "Remove cluster labels:" "TNFRSF9 MUTATED"       
clus
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 

Clustering(682) Variable = KDM5C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        6      0      1      1
  KDM5C WILD-TYPE     40     58     63     42
D682V1, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             6              40
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        7      0      1
  KDM5C WILD-TYPE     44     83     76
D682V2, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             7              44
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED       12      9      2      0
  KDM5C WILD-TYPE    166    174     99     20
D682V3, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1            12             166
  CLUS_2             9             174
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        6      4      5
  KDM5C WILD-TYPE     81     76     95
D682V4, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        2      8      7
  KDM5C WILD-TYPE     87    152    131
D682V5, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM5C MUTATED        9      3      5
  KDM5C WILD-TYPE    173    130     67
D682V6, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        4      6      4      9
  KDM5C WILD-TYPE    108     90     88    177
D682V7, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM5C MUTATED        1      4      3      3      3      1      8
  KDM5C WILD-TYPE     59     46     46     37     60    124     91
D682V8, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        6      3      4     10
  KDM5C WILD-TYPE    124     75     64    186
D682V9, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             4              64
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM5C MUTATED        2      4      2      3      8      0      3      0
  KDM5C WILD-TYPE     38     58     26     77     61     48     40     28
                 vv
clus              CLUS_9
  KDM5C MUTATED        1
  KDM5C WILD-TYPE     73
D682V10, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        0      1      1      0
  KDM5C WILD-TYPE     33     30     26     19
D682V11, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F5-6464      TCGA-F5-6465 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM5C MUTATED        1      0      1      0
  KDM5C WILD-TYPE     53     10     23     22
D682V12, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F5-6464      TCGA-F5-6465 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 

Clustering(683) Variable = IFIT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIT2 MUTATED        2      0      0      1
  IFIT2 WILD-TYPE     44     58     64     42
D683V1, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIT2 MUTATED        2      0      1
  IFIT2 WILD-TYPE     49     83     76
D683V2, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIT2 MUTATED        8      0      0      0
  IFIT2 WILD-TYPE    170    183    101     20
D683V3, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIT2 MUTATED        4      0      1
  IFIT2 WILD-TYPE     83     80     99
D683V4, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIT2 MUTATED        1      2      4
  IFIT2 WILD-TYPE     88    158    134
D683V5, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIT2 MUTATED        4      1      2
  IFIT2 WILD-TYPE    178    132     70
D683V6, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIT2 MUTATED        0      2      3      3
  IFIT2 WILD-TYPE    112     94     89    183
D683V7, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFIT2 MUTATED        1      0      3      0      2      0      2
  IFIT2 WILD-TYPE     59     50     46     40     61    125     97
D683V8, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIT2 MUTATED        1      3      0      4
  IFIT2 WILD-TYPE    129     75     68    192
D683V9, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFIT2 MUTATED        0      3      0      0      5      0      0      0
  IFIT2 WILD-TYPE     40     59     28     80     64     48     43     28
                 vv
clus              CLUS_9
  IFIT2 MUTATED        0
  IFIT2 WILD-TYPE     74
D683V10, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIT2 MUTATED        0      1      0      2
  IFIT2 WILD-TYPE     33     30     27     17
D683V11, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIT2 MUTATED        2      0      1      0
  IFIT2 WILD-TYPE     52     10     23     22
D683V12, multiclass
        clus
vv       IFIT2 MUTATED IFIT2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(684) Variable = NUDCD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDCD1 MUTATED        2      0      0      1
  NUDCD1 WILD-TYPE     44     58     64     42
D684V1, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDCD1 MUTATED        2      1      0
  NUDCD1 WILD-TYPE     49     82     77
D684V2, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDCD1 MUTATED        6      4      0      0
  NUDCD1 WILD-TYPE    172    179    101     20
D684V3, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDCD1 MUTATED        2      2      3
  NUDCD1 WILD-TYPE     85     78     97
D684V4, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDCD1 MUTATED        0      2      7
  NUDCD1 WILD-TYPE     89    158    131
D684V5, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDCD1 MUTATED        7      1      1
  NUDCD1 WILD-TYPE    175    132     71
D684V6, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDCD1 MUTATED        3      2      2      3
  NUDCD1 WILD-TYPE    109     94     90    183
D684V7, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDCD1 MUTATED        2      0      2      0      3      1      2
  NUDCD1 WILD-TYPE     58     50     47     40     60    124     97
D684V8, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDCD1 MUTATED        2      2      2      3
  NUDCD1 WILD-TYPE    128     76     66    193
D684V9, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUDCD1 MUTATED        0      4      0      1      3      0      1      0
  NUDCD1 WILD-TYPE     40     58     28     79     66     48     42     28
                  vv
clus               CLUS_9
  NUDCD1 MUTATED        0
  NUDCD1 WILD-TYPE     74
D684V10, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDCD1 MUTATED        1      1      1      1
  NUDCD1 WILD-TYPE     32     30     26     18
D684V11, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDCD1 MUTATED        2      1      0      1
  NUDCD1 WILD-TYPE     52      9     24     21
D684V12, multiclass
        clus
vv       NUDCD1 MUTATED NUDCD1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(685) Variable = RBPMS MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPMS MUTATED        0      0      0      1
  RBPMS WILD-TYPE     46     58     64     42
D685V1, multiclass
[1] "Remove cluster labels:" "RBPMS MUTATED"         
clus
  RBPMS MUTATED RBPMS WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBPMS MUTATED        0      0      1
  RBPMS WILD-TYPE     51     83     76
D685V2, multiclass
[1] "Remove cluster labels:" "RBPMS MUTATED"         
clus
  RBPMS MUTATED RBPMS WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPMS MUTATED        3      0      1      0
  RBPMS WILD-TYPE    175    183    100     20
D685V3, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBPMS MUTATED        2      0      1
  RBPMS WILD-TYPE     85     80     99
D685V4, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBPMS MUTATED        1      2      1
  RBPMS WILD-TYPE     88    158    137
D685V5, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBPMS MUTATED        1      2      1
  RBPMS WILD-TYPE    181    131     71
D685V6, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPMS MUTATED        0      1      1      2
  RBPMS WILD-TYPE    112     95     91    184
D685V7, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBPMS MUTATED        1      0      0      1      1      0      1
  RBPMS WILD-TYPE     59     50     49     39     62    125     98
D685V8, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPMS MUTATED        1      1      0      2
  RBPMS WILD-TYPE    129     77     68    194
D685V9, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBPMS MUTATED        1      1      0      0      1      0      0      0
  RBPMS WILD-TYPE     39     61     28     80     68     48     43     28
                 vv
clus              CLUS_9
  RBPMS MUTATED        1
  RBPMS WILD-TYPE     73
D685V10, multiclass
        clus
vv       RBPMS MUTATED RBPMS WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPMS MUTATED        0      1      0      0
  RBPMS WILD-TYPE     33     30     27     19
D685V11, multiclass
[1] "Remove cluster labels:" "RBPMS MUTATED"         
clus
  RBPMS MUTATED RBPMS WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-G5-6641 
"RBPMS WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBPMS MUTATED        1      0      0      0
  RBPMS WILD-TYPE     53     10     24     22
D685V12, multiclass
[1] "Remove cluster labels:" "RBPMS MUTATED"         
clus
  RBPMS MUTATED RBPMS WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" "RBPMS WILD-TYPE" 
     TCGA-G5-6641 
"RBPMS WILD-TYPE" 

Clustering(686) Variable = ZNF197 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF197 MUTATED        1      1      0      2
  ZNF197 WILD-TYPE     45     57     64     41
D686V1, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF197 MUTATED        1      1      2
  ZNF197 WILD-TYPE     50     82     75
D686V2, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF197 MUTATED       10      1      1      0
  ZNF197 WILD-TYPE    168    182    100     20
D686V3, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF197 MUTATED        4      0      4
  ZNF197 WILD-TYPE     83     80     96
D686V4, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF197 MUTATED        2      3      3
  ZNF197 WILD-TYPE     87    157    135
D686V5, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF197 MUTATED        3      3      2
  ZNF197 WILD-TYPE    179    130     70
D686V6, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF197 MUTATED        0      4      3      5
  ZNF197 WILD-TYPE    112     92     89    181
D686V7, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF197 MUTATED        1      1      5      0      1      1      3
  ZNF197 WILD-TYPE     59     49     44     40     62    124     96
D686V8, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF197 MUTATED        4      2      0      6
  ZNF197 WILD-TYPE    126     76     68    190
D686V9, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF197 MUTATED        1      1      3      0      6      0      0      0
  ZNF197 WILD-TYPE     39     61     25     80     63     48     43     28
                  vv
clus               CLUS_9
  ZNF197 MUTATED        1
  ZNF197 WILD-TYPE     73
D686V10, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              3               25
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF197 MUTATED        2      1      0      0
  ZNF197 WILD-TYPE     31     30     27     19
D686V11, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF197 MUTATED        1      1      1      0
  ZNF197 WILD-TYPE     53      9     23     22
D686V12, multiclass
        clus
vv       ZNF197 MUTATED ZNF197 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(687) Variable = DOCK5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        5      0      0      6
  DOCK5 WILD-TYPE     41     58     64     37
D687V1, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK5 MUTATED        9      1      1
  DOCK5 WILD-TYPE     42     82     76
D687V2, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED       26      3      0      0
  DOCK5 WILD-TYPE    152    180    101     20
D687V3, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1            26             152
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK5 MUTATED        8      2      8
  DOCK5 WILD-TYPE     79     78     92
D687V4, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK5 MUTATED        4      9     14
  DOCK5 WILD-TYPE     85    151    124
D687V5, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             9             151
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK5 MUTATED       14      8      5
  DOCK5 WILD-TYPE    168    125     67
D687V6, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             8             125
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        4      8      6     11
  DOCK5 WILD-TYPE    108     88     86    175
D687V7, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             8              88
  CLUS_3             6              86
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK5 MUTATED        5      4      8      1      1      0     10
  DOCK5 WILD-TYPE     55     46     41     39     62    125     89
D687V8, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED       11      3      1     12
  DOCK5 WILD-TYPE    119     75     67    184
D687V9, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DOCK5 MUTATED        2      5      3      4      7      2      1      2
  DOCK5 WILD-TYPE     38     57     25     76     62     46     42     26
                 vv
clus              CLUS_9
  DOCK5 MUTATED        1
  DOCK5 WILD-TYPE     73
D687V10, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        2      0      0      4
  DOCK5 WILD-TYPE     31     31     27     15
D687V11, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        4      0      1      1
  DOCK5 WILD-TYPE     50     10     23     21
D687V12, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(688) Variable = TNRC6C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        6      1      0      1
  TNRC6C WILD-TYPE     40     57     64     42
D688V1, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              6               40
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        5      2      1
  TNRC6C WILD-TYPE     46     81     76
D688V2, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              5               46
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED       17      0      1      1
  TNRC6C WILD-TYPE    161    183    100     19
D688V3, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1             17              161
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        3      0      9
  TNRC6C WILD-TYPE     84     80     91
D688V4, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        3      5      9
  TNRC6C WILD-TYPE     86    155    129
D688V5, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED       10      5      2
  TNRC6C WILD-TYPE    172    128     70
D688V6, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1             10              172
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        0      6      6      8
  TNRC6C WILD-TYPE    112     90     86    178
D688V7, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              6               86
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC6C MUTATED        1      0     11      0      1      2      5
  TNRC6C WILD-TYPE     59     50     38     40     62    123     94
D688V8, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3             11               38
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        8      1      0     11
  TNRC6C WILD-TYPE    122     77     68    185
D688V9, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              8              122
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNRC6C MUTATED        2      4      0      2     10      0      0      1
  TNRC6C WILD-TYPE     38     58     28     78     59     48     43     27
                  vv
clus               CLUS_9
  TNRC6C MUTATED        1
  TNRC6C WILD-TYPE     73
D688V10, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5             10               59
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        0      0      0      2
  TNRC6C WILD-TYPE     33     31     27     17
D688V11, multiclass
[1] "Remove cluster labels:" "TNRC6C MUTATED"        
clus
  TNRC6C MUTATED TNRC6C WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        2      0      0      0
  TNRC6C WILD-TYPE     52     10     24     22
D688V12, multiclass
[1] "Remove cluster labels:" "TNRC6C MUTATED"        
clus
  TNRC6C MUTATED TNRC6C WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" "TNRC6C WILD-TYPE" 

Clustering(689) Variable = NIPA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        3      1      1      0
  NIPA2 WILD-TYPE     43     57     63     43
D689V1, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPA2 MUTATED        3      0      2
  NIPA2 WILD-TYPE     48     83     75
D689V2, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        6      1      1      0
  NIPA2 WILD-TYPE    172    182    100     20
D689V3, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPA2 MUTATED        0      0      3
  NIPA2 WILD-TYPE     87     80     97
D689V4, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPA2 MUTATED        1      1      2
  NIPA2 WILD-TYPE     88    159    136
D689V5, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPA2 MUTATED        1      1      2
  NIPA2 WILD-TYPE    181    132     70
D689V6, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        0      3      0      5
  NIPA2 WILD-TYPE    112     93     92    181
D689V7, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPA2 MUTATED        0      0      2      0      0      2      4
  NIPA2 WILD-TYPE     60     50     47     40     63    123     95
D689V8, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        2      0      0      6
  NIPA2 WILD-TYPE    128     78     68    190
D689V9, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NIPA2 MUTATED        0      0      1      0      7      0      0      0
  NIPA2 WILD-TYPE     40     62     27     80     62     48     43     28
                 vv
clus              CLUS_9
  NIPA2 MUTATED        0
  NIPA2 WILD-TYPE     74
D689V10, multiclass
        clus
vv       NIPA2 MUTATED NIPA2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        0      0      0      0
  NIPA2 WILD-TYPE     33     31     27     19
D689V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPA2 MUTATED        0      0      0      0
  NIPA2 WILD-TYPE     54     10     24     22
D689V12, multiclass

Clustering(690) Variable = NSUN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN2 MUTATED        2      0      1      0
  NSUN2 WILD-TYPE     44     58     63     43
D690V1, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN2 MUTATED        2      1      0
  NSUN2 WILD-TYPE     49     82     77
D690V2, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN2 MUTATED        6      3      3      0
  NSUN2 WILD-TYPE    172    180     98     20
D690V3, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN2 MUTATED        6      0      3
  NSUN2 WILD-TYPE     81     80     97
D690V4, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN2 MUTATED        1      1      8
  NSUN2 WILD-TYPE     88    159    130
D690V5, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NSUN2 MUTATED        8      2      0
  NSUN2 WILD-TYPE    174    131     72
D690V6, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN2 MUTATED        1      5      3      3
  NSUN2 WILD-TYPE    111     91     89    183
D690V7, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NSUN2 MUTATED        0      4      3      1      1      1      2
  NSUN2 WILD-TYPE     60     46     46     39     62    124     97
D690V8, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN2 MUTATED        4      3      0      5
  NSUN2 WILD-TYPE    126     75     68    191
D690V9, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NSUN2 MUTATED        1      3      2      2      1      0      0      1
  NSUN2 WILD-TYPE     39     59     26     78     68     48     43     27
                 vv
clus              CLUS_9
  NSUN2 MUTATED        2
  NSUN2 WILD-TYPE     72
D690V10, multiclass
        clus
vv       NSUN2 MUTATED NSUN2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN2 MUTATED        2      0      0      0
  NSUN2 WILD-TYPE     31     31     27     19
D690V11, multiclass
[1] "Remove cluster labels:" "NSUN2 MUTATED"         
clus
  NSUN2 MUTATED NSUN2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSUN2 MUTATED        2      0      0      0
  NSUN2 WILD-TYPE     52     10     24     22
D690V12, multiclass
[1] "Remove cluster labels:" "NSUN2 MUTATED"         
clus
  NSUN2 MUTATED NSUN2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" "NSUN2 WILD-TYPE" 

Clustering(691) Variable = CYP4X1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4X1 MUTATED        0      0      0      0
  CYP4X1 WILD-TYPE     46     58     64     43
D691V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP4X1 MUTATED        0      0      0
  CYP4X1 WILD-TYPE     51     83     77
D691V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4X1 MUTATED        3      2      1      0
  CYP4X1 WILD-TYPE    175    181    100     20
D691V3, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP4X1 MUTATED        3      1      2
  CYP4X1 WILD-TYPE     84     79     98
D691V4, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP4X1 MUTATED        1      2      2
  CYP4X1 WILD-TYPE     88    158    136
D691V5, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP4X1 MUTATED        3      0      2
  CYP4X1 WILD-TYPE    179    133     70
D691V6, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              0              133
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4X1 MUTATED        1      3      2      0
  CYP4X1 WILD-TYPE    111     93     90    186
D691V7, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP4X1 MUTATED        1      1      1      1      2      0      0
  CYP4X1 WILD-TYPE     59     49     48     39     61    125     99
D691V8, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4X1 MUTATED        4      2      0      0
  CYP4X1 WILD-TYPE    126     76     68    196
D691V9, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP4X1 MUTATED        1      2      2      0      1      0      0      0
  CYP4X1 WILD-TYPE     39     60     26     80     68     48     43     28
                  vv
clus               CLUS_9
  CYP4X1 MUTATED        0
  CYP4X1 WILD-TYPE     74
D691V10, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4X1 MUTATED        0      1      1      1
  CYP4X1 WILD-TYPE     33     30     26     18
D691V11, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4X1 MUTATED        1      0      2      0
  CYP4X1 WILD-TYPE     53     10     22     22
D691V12, multiclass
        clus
vv       CYP4X1 MUTATED CYP4X1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(692) Variable = C11ORF57 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF57 MUTATED        2      1      0      2
  C11ORF57 WILD-TYPE     44     57     64     41
D692V1, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF57 MUTATED        2      2      1
  C11ORF57 WILD-TYPE     49     81     76
D692V2, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF57 MUTATED        8      2      1      0
  C11ORF57 WILD-TYPE    170    181    100     20
D692V3, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                8                170
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF57 MUTATED        2      0      4
  C11ORF57 WILD-TYPE     85     80     96
D692V4, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF57 MUTATED        1      3      6
  C11ORF57 WILD-TYPE     88    157    132
D692V5, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF57 MUTATED        5      4      1
  C11ORF57 WILD-TYPE    177    129     71
D692V6, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF57 MUTATED        0      4      2      5
  C11ORF57 WILD-TYPE    112     92     90    181
D692V7, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                4                 92
  CLUS_3                2                 90
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C11ORF57 MUTATED        0      1      3      0      2      1      4
  C11ORF57 WILD-TYPE     60     49     46     40     61    124     95
D692V8, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF57 MUTATED        2      2      0      7
  C11ORF57 WILD-TYPE    128     76     68    189
D692V9, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C11ORF57 MUTATED        0      4      2      1      2      0      0      1
  C11ORF57 WILD-TYPE     40     58     26     79     67     48     43     27
                    vv
clus                 CLUS_9
  C11ORF57 MUTATED        1
  C11ORF57 WILD-TYPE     73
D692V10, multiclass
        clus
vv       C11ORF57 MUTATED C11ORF57 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 58
  CLUS_3                2                 26
  CLUS_4                1                 79
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF57 MUTATED        0      0      0      0
  C11ORF57 WILD-TYPE     33     31     27     19
D692V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF57 MUTATED        0      0      0      0
  C11ORF57 WILD-TYPE     54     10     24     22
D692V12, multiclass

Clustering(693) Variable = ZNF439 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF439 MUTATED        0      0      0      2
  ZNF439 WILD-TYPE     46     58     64     41
D693V1, multiclass
[1] "Remove cluster labels:" "ZNF439 MUTATED"        
clus
  ZNF439 MUTATED ZNF439 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF439 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF439 MUTATED        0      1      1
  ZNF439 WILD-TYPE     51     82     76
D693V2, multiclass
[1] "Remove cluster labels:" "ZNF439 MUTATED"        
clus
  ZNF439 MUTATED ZNF439 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" "ZNF439 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF439 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF439 MUTATED        5      0      0      0
  ZNF439 WILD-TYPE    173    183    101     20
D693V3, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF439 MUTATED        2      0      1
  ZNF439 WILD-TYPE     85     80     99
D693V4, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF439 MUTATED        0      3      2
  ZNF439 WILD-TYPE     89    157    136
D693V5, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF439 MUTATED        1      3      1
  ZNF439 WILD-TYPE    181    130     71
D693V6, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF439 MUTATED        1      1      1      2
  ZNF439 WILD-TYPE    111     95     91    184
D693V7, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF439 MUTATED        2      1      0      0      1      0      1
  ZNF439 WILD-TYPE     58     49     49     40     62    125     98
D693V8, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF439 MUTATED        0      2      0      3
  ZNF439 WILD-TYPE    130     76     68    193
D693V9, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF439 MUTATED        0      1      1      0      1      1      0      0
  ZNF439 WILD-TYPE     40     61     27     80     68     47     43     28
                  vv
clus               CLUS_9
  ZNF439 MUTATED        1
  ZNF439 WILD-TYPE     73
D693V10, multiclass
        clus
vv       ZNF439 MUTATED ZNF439 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF439 MUTATED        0      0      0      0
  ZNF439 WILD-TYPE     33     31     27     19
D693V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF439 MUTATED        0      0      0      0
  ZNF439 WILD-TYPE     54     10     24     22
D693V12, multiclass

Clustering(694) Variable = UBA3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA3 MUTATED        2      0      0      1
  UBA3 WILD-TYPE     44     58     64     42
D694V1, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA3 MUTATED        1      1      1
  UBA3 WILD-TYPE     50     82     76
D694V2, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA3 MUTATED        5      0      2      0
  UBA3 WILD-TYPE    173    183     99     20
D694V3, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA3 MUTATED        3      0      2
  UBA3 WILD-TYPE     84     80     98
D694V4, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA3 MUTATED        1      4      1
  UBA3 WILD-TYPE     88    156    137
D694V5, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA3 MUTATED        1      2      3
  UBA3 WILD-TYPE    181    131     69
D694V6, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA3 MUTATED        0      1      2      4
  UBA3 WILD-TYPE    112     95     90    182
D694V7, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBA3 MUTATED        1      1      0      0      2      1      2
  UBA3 WILD-TYPE     59     49     49     40     61    124     97
D694V8, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA3 MUTATED        2      1      0      4
  UBA3 WILD-TYPE    128     77     68    192
D694V9, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UBA3 MUTATED        2      0      1      2      1      0      0      0      1
  UBA3 WILD-TYPE     38     62     27     78     68     48     43     28     73
D694V10, multiclass
        clus
vv       UBA3 MUTATED UBA3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA3 MUTATED        0      1      0      0
  UBA3 WILD-TYPE     33     30     27     19
D694V11, multiclass
[1] "Remove cluster labels:" "UBA3 MUTATED"          
clus
  UBA3 MUTATED UBA3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3511 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-G5-6641 
"UBA3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA3 MUTATED        1      0      0      0
  UBA3 WILD-TYPE     53     10     24     22
D694V12, multiclass
[1] "Remove cluster labels:" "UBA3 MUTATED"          
clus
  UBA3 MUTATED UBA3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3511 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" "UBA3 WILD-TYPE" 
    TCGA-G5-6641 
"UBA3 WILD-TYPE" 

Clustering(695) Variable = KIAA0564 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0564 MUTATED        3      0      0      5
  KIAA0564 WILD-TYPE     43     58     64     38
D695V1, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                5                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0564 MUTATED        4      2      2
  KIAA0564 WILD-TYPE     47     81     75
D695V2, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0564 MUTATED       20      2      3      0
  KIAA0564 WILD-TYPE    158    181     98     20
D695V3, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1               20                158
  CLUS_2                2                181
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0564 MUTATED        5      2     10
  KIAA0564 WILD-TYPE     82     78     90
D695V4, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                2                 78
  CLUS_3               10                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0564 MUTATED        2      7     14
  KIAA0564 WILD-TYPE     87    153    124
D695V5, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                7                153
  CLUS_3               14                124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0564 MUTATED       15      7      1
  KIAA0564 WILD-TYPE    167    126     71
D695V6, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1               15                167
  CLUS_2                7                126
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0564 MUTATED        1     10      7      7
  KIAA0564 WILD-TYPE    111     86     85    179
D695V7, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                1                111
  CLUS_2               10                 86
  CLUS_3                7                 85
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0564 MUTATED        3      2     10      1      2      2      5
  KIAA0564 WILD-TYPE     57     48     39     39     61    123     94
D695V8, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                2                 48
  CLUS_3               10                 39
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                2                123
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0564 MUTATED        6      4      2     12
  KIAA0564 WILD-TYPE    124     74     66    184
D695V9, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                4                 74
  CLUS_3                2                 66
  CLUS_4               12                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0564 MUTATED        2      3      2      4     11      0      1      0
  KIAA0564 WILD-TYPE     38     59     26     76     58     48     42     28
                    vv
clus                 CLUS_9
  KIAA0564 MUTATED        1
  KIAA0564 WILD-TYPE     73
D695V10, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                2                 26
  CLUS_4                4                 76
  CLUS_5               11                 58
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0564 MUTATED        2      0      0      5
  KIAA0564 WILD-TYPE     31     31     27     14
D695V11, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                5                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0564 MUTATED        4      0      3      0
  KIAA0564 WILD-TYPE     50     10     21     22
D695V12, multiclass
        clus
vv       KIAA0564 MUTATED KIAA0564 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                3                 21
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(696) Variable = ATP8B2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B2 MUTATED        3      0      0      2
  ATP8B2 WILD-TYPE     43     58     64     41
D696V1, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B2 MUTATED        3      1      1
  ATP8B2 WILD-TYPE     48     82     76
D696V2, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B2 MUTATED       15      2      1      0
  ATP8B2 WILD-TYPE    163    181    100     20
D696V3, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B2 MUTATED        3      2      8
  ATP8B2 WILD-TYPE     84     78     92
D696V4, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B2 MUTATED        1      9      6
  ATP8B2 WILD-TYPE     88    151    132
D696V5, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              9              151
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B2 MUTATED        8      8      0
  ATP8B2 WILD-TYPE    174    125     72
D696V6, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              8              125
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B2 MUTATED        3      5      4      6
  ATP8B2 WILD-TYPE    109     91     88    180
D696V7, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP8B2 MUTATED        3      1      6      1      1      1      5
  ATP8B2 WILD-TYPE     57     49     43     39     62    124     94
D696V8, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B2 MUTATED        7      2      1      8
  ATP8B2 WILD-TYPE    123     76     67    188
D696V9, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP8B2 MUTATED        2      4      1      2      7      1      0      1
  ATP8B2 WILD-TYPE     38     58     27     78     62     47     43     27
                  vv
clus               CLUS_9
  ATP8B2 MUTATED        0
  ATP8B2 WILD-TYPE     74
D696V10, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B2 MUTATED        1      0      1      2
  ATP8B2 WILD-TYPE     32     31     26     17
D696V11, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B2 MUTATED        2      0      1      1
  ATP8B2 WILD-TYPE     52     10     23     21
D696V12, multiclass
        clus
vv       ATP8B2 MUTATED ATP8B2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(697) Variable = PNPLA5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA5 MUTATED        1      0      1      0
  PNPLA5 WILD-TYPE     45     58     63     43
D697V1, multiclass
[1] "Remove cluster labels:" "PNPLA5 MUTATED"        
clus
  PNPLA5 MUTATED PNPLA5 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AY-4071 
"PNPLA5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA5 MUTATED        1      0      1
  PNPLA5 WILD-TYPE     50     83     76
D697V2, multiclass
[1] "Remove cluster labels:" "PNPLA5 MUTATED"        
clus
  PNPLA5 MUTATED PNPLA5 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AY-4071 
"PNPLA5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA5 MUTATED       10      0      1      1
  PNPLA5 WILD-TYPE    168    183    100     19
D697V3, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA5 MUTATED        3      0      6
  PNPLA5 WILD-TYPE     84     80     94
D697V4, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA5 MUTATED        2      4      4
  PNPLA5 WILD-TYPE     87    156    134
D697V5, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA5 MUTATED        4      4      2
  PNPLA5 WILD-TYPE    178    129     70
D697V6, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA5 MUTATED        0      4      4      3
  PNPLA5 WILD-TYPE    112     92     88    183
D697V7, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNPLA5 MUTATED        0      0      8      0      0      0      3
  PNPLA5 WILD-TYPE     60     50     41     40     63    125     96
D697V8, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA5 MUTATED        5      0      0      7
  PNPLA5 WILD-TYPE    125     78     68    189
D697V9, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PNPLA5 MUTATED        0      2      0      0      4      1      2      1
  PNPLA5 WILD-TYPE     40     60     28     80     65     47     41     27
                  vv
clus               CLUS_9
  PNPLA5 MUTATED        2
  PNPLA5 WILD-TYPE     72
D697V10, multiclass
        clus
vv       PNPLA5 MUTATED PNPLA5 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA5 MUTATED        0      0      0      2
  PNPLA5 WILD-TYPE     33     31     27     17
D697V11, multiclass
[1] "Remove cluster labels:" "PNPLA5 MUTATED"        
clus
  PNPLA5 MUTATED PNPLA5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235       TCGA-G5-6641 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA5 MUTATED        1      0      1      0
  PNPLA5 WILD-TYPE     53     10     23     22
D697V12, multiclass
[1] "Remove cluster labels:" "PNPLA5 MUTATED"        
clus
  PNPLA5 MUTATED PNPLA5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235       TCGA-G5-6641 
"PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" "PNPLA5 WILD-TYPE" 

Clustering(698) Variable = VPS13B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED        4      1      7      5
  VPS13B WILD-TYPE     42     57     57     38
D698V1, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              7               57
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13B MUTATED        7      5      5
  VPS13B WILD-TYPE     44     78     72
D698V2, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              7               44
  CLUS_2              5               78
  CLUS_3              5               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED       37     13      8      1
  VPS13B WILD-TYPE    141    170     93     19
D698V3, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             37              141
  CLUS_2             13              170
  CLUS_3              8               93
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13B MUTATED       14      6     22
  VPS13B WILD-TYPE     73     74     78
D698V4, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             14               73
  CLUS_2              6               74
  CLUS_3             22               78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13B MUTATED        6     22     23
  VPS13B WILD-TYPE     83    138    115
D698V5, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              6               83
  CLUS_2             22              138
  CLUS_3             23              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13B MUTATED       27     18      6
  VPS13B WILD-TYPE    155    115     66
D698V6, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             27              155
  CLUS_2             18              115
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED        9     16     17     18
  VPS13B WILD-TYPE    103     80     75    168
D698V7, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              9              103
  CLUS_2             16               80
  CLUS_3             17               75
  CLUS_4             18              168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VPS13B MUTATED        4      9     16      4      7      7     13
  VPS13B WILD-TYPE     56     41     33     36     56    118     86
D698V8, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              4               56
  CLUS_2              9               41
  CLUS_3             16               33
  CLUS_4              4               36
  CLUS_5              7               56
  CLUS_6              7              118
  CLUS_7             13               86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED       20     11      4     24
  VPS13B WILD-TYPE    110     67     64    172
D698V9, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             20              110
  CLUS_2             11               67
  CLUS_3              4               64
  CLUS_4             24              172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VPS13B MUTATED        6     11      2      8     19      2      3      2
  VPS13B WILD-TYPE     34     51     26     72     50     46     40     26
                  vv
clus               CLUS_9
  VPS13B MUTATED        6
  VPS13B WILD-TYPE     68
D698V10, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              6               34
  CLUS_2             11               51
  CLUS_3              2               26
  CLUS_4              8               72
  CLUS_5             19               50
  CLUS_6              2               46
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              6               68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED        4      4      1      4
  VPS13B WILD-TYPE     29     27     26     15
D698V11, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              4               29
  CLUS_2              4               27
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED        9      2      2      0
  VPS13B WILD-TYPE     45      8     22     22
D698V12, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              9               45
  CLUS_2              2                8
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(699) Variable = GPR22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR22 MUTATED        1      0      0      1
  GPR22 WILD-TYPE     45     58     64     42
D699V1, multiclass
[1] "Remove cluster labels:" "GPR22 MUTATED"         
clus
  GPR22 MUTATED GPR22 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3837 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AY-4071 
"GPR22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR22 MUTATED        2      0      0
  GPR22 WILD-TYPE     49     83     77
D699V2, multiclass
[1] "Remove cluster labels:" "GPR22 MUTATED"         
clus
  GPR22 MUTATED GPR22 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3837 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AY-4071 
"GPR22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR22 MUTATED        8      0      1      0
  GPR22 WILD-TYPE    170    183    100     20
D699V3, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR22 MUTATED        3      0      4
  GPR22 WILD-TYPE     84     80     96
D699V4, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR22 MUTATED        2      0      7
  GPR22 WILD-TYPE     87    160    131
D699V5, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0             160
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR22 MUTATED        7      0      2
  GPR22 WILD-TYPE    175    133     70
D699V6, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             0             133
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR22 MUTATED        0      4      3      2
  GPR22 WILD-TYPE    112     92     89    184
D699V7, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR22 MUTATED        0      1      4      1      1      0      2
  GPR22 WILD-TYPE     60     49     45     39     62    125     97
D699V8, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR22 MUTATED        4      1      1      2
  GPR22 WILD-TYPE    126     77     67    194
D699V9, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR22 MUTATED        1      4      0      0      1      0      1      1
  GPR22 WILD-TYPE     39     58     28     80     68     48     42     27
                 vv
clus              CLUS_9
  GPR22 MUTATED        0
  GPR22 WILD-TYPE     74
D699V10, multiclass
        clus
vv       GPR22 MUTATED GPR22 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR22 MUTATED        0      0      1      1
  GPR22 WILD-TYPE     33     31     26     18
D699V11, multiclass
[1] "Remove cluster labels:" "GPR22 MUTATED"         
clus
  GPR22 MUTATED GPR22 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR22 MUTATED        1      0      1      0
  GPR22 WILD-TYPE     53     10     23     22
D699V12, multiclass
[1] "Remove cluster labels:" "GPR22 MUTATED"         
clus
  GPR22 MUTATED GPR22 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" "GPR22 WILD-TYPE" 

Clustering(700) Variable = LRP6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP6 MUTATED        5      2      1      5
  LRP6 WILD-TYPE     41     56     63     38
D700V1, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            2             56
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP6 MUTATED        6      2      5
  LRP6 WILD-TYPE     45     81     72
D700V2, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP6 MUTATED       17      4      5      1
  LRP6 WILD-TYPE    161    179     96     19
D700V3, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            4            179
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP6 MUTATED        6      1      6
  LRP6 WILD-TYPE     81     79     94
D700V4, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP6 MUTATED        3      9     10
  LRP6 WILD-TYPE     86    151    128
D700V5, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            9            151
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP6 MUTATED        9      9      4
  LRP6 WILD-TYPE    173    124     68
D700V6, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            9            124
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP6 MUTATED        3      5      5     14
  LRP6 WILD-TYPE    109     91     87    172
D700V7, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4           14            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRP6 MUTATED        4      2      3      2      3      4      9
  LRP6 WILD-TYPE     56     48     46     38     60    121     90
D700V8, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            4            121
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP6 MUTATED        7      3      1     15
  LRP6 WILD-TYPE    123     75     67    181
D700V9, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4           15            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LRP6 MUTATED        1      4      4      3      9      2      1      1      1
  LRP6 WILD-TYPE     39     58     24     77     60     46     42     27     73
D700V10, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            4             24
  CLUS_4            3             77
  CLUS_5            9             60
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP6 MUTATED        1      1      1      2
  LRP6 WILD-TYPE     32     30     26     17
D700V11, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP6 MUTATED        3      0      2      0
  LRP6 WILD-TYPE     51     10     22     22
D700V12, multiclass
        clus
vv       LRP6 MUTATED LRP6 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(701) Variable = EFHC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        1      0      2      2
  EFHC1 WILD-TYPE     45     58     62     41
D701V1, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC1 MUTATED        1      2      2
  EFHC1 WILD-TYPE     50     81     75
D701V2, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        7      5      1      0
  EFHC1 WILD-TYPE    171    178    100     20
D701V3, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             5             178
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC1 MUTATED        3      2      3
  EFHC1 WILD-TYPE     84     78     97
D701V4, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC1 MUTATED        1      5      5
  EFHC1 WILD-TYPE     88    155    133
D701V5, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC1 MUTATED        6      4      1
  EFHC1 WILD-TYPE    176    129     71
D701V6, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        3      0      6      4
  EFHC1 WILD-TYPE    109     96     86    182
D701V7, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             0              96
  CLUS_3             6              86
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFHC1 MUTATED        1      1      4      1      2      2      2
  EFHC1 WILD-TYPE     59     49     45     39     61    123     97
D701V8, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        3      3      1      6
  EFHC1 WILD-TYPE    127     75     67    190
D701V9, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFHC1 MUTATED        1      4      2      0      3      0      1      1
  EFHC1 WILD-TYPE     39     58     26     80     66     48     42     27
                 vv
clus              CLUS_9
  EFHC1 MUTATED        1
  EFHC1 WILD-TYPE     73
D701V10, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        0      1      1      2
  EFHC1 WILD-TYPE     33     30     26     17
D701V11, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        2      2      0      0
  EFHC1 WILD-TYPE     52      8     24     22
D701V12, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(702) Variable = CDC7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC7 MUTATED        2      0      0      1
  CDC7 WILD-TYPE     44     58     64     42
D702V1, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC7 MUTATED        2      0      1
  CDC7 WILD-TYPE     49     83     76
D702V2, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC7 MUTATED        9      1      1      1
  CDC7 WILD-TYPE    169    182    100     19
D702V3, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC7 MUTATED        5      2      2
  CDC7 WILD-TYPE     82     78     98
D702V4, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC7 MUTATED        2      5      3
  CDC7 WILD-TYPE     87    155    135
D702V5, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC7 MUTATED        5      2      3
  CDC7 WILD-TYPE    177    131     69
D702V6, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC7 MUTATED        3      2      4      3
  CDC7 WILD-TYPE    109     94     88    183
D702V7, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC7 MUTATED        2      2      3      0      3      0      2
  CDC7 WILD-TYPE     58     48     46     40     60    125     97
D702V8, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC7 MUTATED        5      3      1      3
  CDC7 WILD-TYPE    125     75     67    193
D702V9, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CDC7 MUTATED        0      5      0      2      3      1      1      0      0
  CDC7 WILD-TYPE     40     57     28     78     66     47     42     28     74
D702V10, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            5             57
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC7 MUTATED        1      1      0      1
  CDC7 WILD-TYPE     32     30     27     18
D702V11, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC7 MUTATED        1      1      0      1
  CDC7 WILD-TYPE     53      9     24     21
D702V12, multiclass
        clus
vv       CDC7 MUTATED CDC7 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(703) Variable = ATP5J2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP5J2 MUTATED        1      0      0      0
  ATP5J2 WILD-TYPE     45     58     64     43
D703V1, multiclass
[1] "Remove cluster labels:" "ATP5J2 MUTATED"        
clus
  ATP5J2 MUTATED ATP5J2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP5J2 MUTATED        1      0      0
  ATP5J2 WILD-TYPE     50     83     77
D703V2, multiclass
[1] "Remove cluster labels:" "ATP5J2 MUTATED"        
clus
  ATP5J2 MUTATED ATP5J2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ATP5J2 WILD-TYPE" "ATP5J2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP5J2 MUTATED        3      2      0      0
  ATP5J2 WILD-TYPE    175    181    101     20
D703V3, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP5J2 MUTATED        2      1      1
  ATP5J2 WILD-TYPE     85     79     99
D703V4, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP5J2 MUTATED        0      2      2
  ATP5J2 WILD-TYPE     89    158    136
D703V5, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP5J2 MUTATED        2      1      1
  ATP5J2 WILD-TYPE    180    132     71
D703V6, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP5J2 MUTATED        1      1      1      2
  ATP5J2 WILD-TYPE    111     95     91    184
D703V7, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP5J2 MUTATED        1      1      0      0      1      1      1
  ATP5J2 WILD-TYPE     59     49     49     40     62    124     98
D703V8, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP5J2 MUTATED        1      0      1      3
  ATP5J2 WILD-TYPE    129     78     67    193
D703V9, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP5J2 MUTATED        0      1      0      1      1      1      0      0
  ATP5J2 WILD-TYPE     40     61     28     79     68     47     43     28
                  vv
clus               CLUS_9
  ATP5J2 MUTATED        1
  ATP5J2 WILD-TYPE     73
D703V10, multiclass
        clus
vv       ATP5J2 MUTATED ATP5J2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP5J2 MUTATED        0      0      0      0
  ATP5J2 WILD-TYPE     33     31     27     19
D703V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP5J2 MUTATED        0      0      0      0
  ATP5J2 WILD-TYPE     54     10     24     22
D703V12, multiclass

Clustering(704) Variable = ADH1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH1B MUTATED        1      1      0      1
  ADH1B WILD-TYPE     45     57     64     42
D704V1, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADH1B MUTATED        1      1      1
  ADH1B WILD-TYPE     50     82     76
D704V2, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH1B MUTATED        7      2      1      0
  ADH1B WILD-TYPE    171    181    100     20
D704V3, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADH1B MUTATED        0      2      5
  ADH1B WILD-TYPE     87     78     95
D704V4, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADH1B MUTATED        1      4      2
  ADH1B WILD-TYPE     88    156    136
D704V5, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADH1B MUTATED        3      3      1
  ADH1B WILD-TYPE    179    130     71
D704V6, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH1B MUTATED        3      3      2      2
  ADH1B WILD-TYPE    109     93     90    184
D704V7, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADH1B MUTATED        2      1      3      0      0      1      3
  ADH1B WILD-TYPE     58     49     46     40     63    124     96
D704V8, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH1B MUTATED        5      0      2      3
  ADH1B WILD-TYPE    125     78     66    193
D704V9, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADH1B MUTATED        0      0      1      1      5      0      2      0
  ADH1B WILD-TYPE     40     62     27     79     64     48     41     28
                 vv
clus              CLUS_9
  ADH1B MUTATED        1
  ADH1B WILD-TYPE     73
D704V10, multiclass
        clus
vv       ADH1B MUTATED ADH1B WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH1B MUTATED        0      0      1      1
  ADH1B WILD-TYPE     33     31     26     18
D704V11, multiclass
[1] "Remove cluster labels:" "ADH1B MUTATED"         
clus
  ADH1B MUTATED ADH1B WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH1B MUTATED        1      0      1      0
  ADH1B WILD-TYPE     53     10     23     22
D704V12, multiclass
[1] "Remove cluster labels:" "ADH1B MUTATED"         
clus
  ADH1B MUTATED ADH1B WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" "ADH1B WILD-TYPE" 

Clustering(705) Variable = PARP12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP12 MUTATED        2      1      0      0
  PARP12 WILD-TYPE     44     57     64     43
D705V1, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP12 MUTATED        2      1      0
  PARP12 WILD-TYPE     49     82     77
D705V2, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP12 MUTATED        6      3      2      0
  PARP12 WILD-TYPE    172    180     99     20
D705V3, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP12 MUTATED        1      1      6
  PARP12 WILD-TYPE     86     79     94
D705V4, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP12 MUTATED        0      4      4
  PARP12 WILD-TYPE     89    156    134
D705V5, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP12 MUTATED        2      5      1
  PARP12 WILD-TYPE    180    128     71
D705V6, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP12 MUTATED        3      4      1      3
  PARP12 WILD-TYPE    109     92     91    183
D705V7, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARP12 MUTATED        1      2      2      2      1      1      2
  PARP12 WILD-TYPE     59     48     47     38     62    124     97
D705V8, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP12 MUTATED        6      1      0      4
  PARP12 WILD-TYPE    124     77     68    192
D705V9, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PARP12 MUTATED        2      0      1      2      3      2      1      0
  PARP12 WILD-TYPE     38     62     27     78     66     46     42     28
                  vv
clus               CLUS_9
  PARP12 MUTATED        0
  PARP12 WILD-TYPE     74
D705V10, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP12 MUTATED        0      1      0      2
  PARP12 WILD-TYPE     33     30     27     17
D705V11, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP12 MUTATED        1      0      1      1
  PARP12 WILD-TYPE     53     10     23     21
D705V12, multiclass
        clus
vv       PARP12 MUTATED PARP12 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(706) Variable = CD101 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD101 MUTATED        2      0      0      3
  CD101 WILD-TYPE     44     58     64     40
D706V1, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD101 MUTATED        1      2      2
  CD101 WILD-TYPE     50     81     75
D706V2, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD101 MUTATED        9      2      0      0
  CD101 WILD-TYPE    169    181    101     20
D706V3, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD101 MUTATED        4      0      2
  CD101 WILD-TYPE     83     80     98
D706V4, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD101 MUTATED        0      3      4
  CD101 WILD-TYPE     89    157    134
D706V5, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD101 MUTATED        5      2      0
  CD101 WILD-TYPE    177    131     72
D706V6, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD101 MUTATED        0      2      4      5
  CD101 WILD-TYPE    112     94     88    181
D706V7, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD101 MUTATED        2      0      3      1      1      1      3
  CD101 WILD-TYPE     58     50     46     39     62    124     96
D706V8, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD101 MUTATED        2      3      0      6
  CD101 WILD-TYPE    128     75     68    190
D706V9, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CD101 MUTATED        0      4      2      2      3      0      0      0
  CD101 WILD-TYPE     40     58     26     78     66     48     43     28
                 vv
clus              CLUS_9
  CD101 MUTATED        0
  CD101 WILD-TYPE     74
D706V10, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD101 MUTATED        1      0      1      1
  CD101 WILD-TYPE     32     31     26     18
D706V11, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD101 MUTATED        1      1      1      0
  CD101 WILD-TYPE     53      9     23     22
D706V12, multiclass
        clus
vv       CD101 MUTATED CD101 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(707) Variable = PTPRC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRC MUTATED        4      0      1      4
  PTPRC WILD-TYPE     42     58     63     39
D707V1, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRC MUTATED        5      1      3
  PTPRC WILD-TYPE     46     82     74
D707V2, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRC MUTATED       21      5      2      1
  PTPRC WILD-TYPE    157    178     99     19
D707V3, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1            21             157
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRC MUTATED        8      1     10
  PTPRC WILD-TYPE     79     79     90
D707V4, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             8              79
  CLUS_2             1              79
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRC MUTATED        3      6     14
  PTPRC WILD-TYPE     86    154    124
D707V5, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRC MUTATED       13      8      2
  PTPRC WILD-TYPE    169    125     70
D707V6, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1            13             169
  CLUS_2             8             125
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRC MUTATED        2      6     10     11
  PTPRC WILD-TYPE    110     90     82    175
D707V7, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3            10              82
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRC MUTATED        1      4      7      0      6      1     10
  PTPRC WILD-TYPE     59     46     42     40     57    124     89
D707V8, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             6              57
  CLUS_6             1             124
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRC MUTATED        9      6      0     14
  PTPRC WILD-TYPE    121     72     68    182
D707V9, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             9             121
  CLUS_2             6              72
  CLUS_3             0              68
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRC MUTATED        2      5      3      2     11      1      1      2
  PTPRC WILD-TYPE     38     57     25     78     58     47     42     26
                 vv
clus              CLUS_9
  PTPRC MUTATED        2
  PTPRC WILD-TYPE     72
D707V10, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5            11              58
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRC MUTATED        2      4      0      5
  PTPRC WILD-TYPE     31     27     27     14
D707V11, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             2              31
  CLUS_2             4              27
  CLUS_3             0              27
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRC MUTATED        8      1      1      1
  PTPRC WILD-TYPE     46      9     23     21
D707V12, multiclass
        clus
vv       PTPRC MUTATED PTPRC WILD-TYPE
  CLUS_1             8              46
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(708) Variable = RIF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        3      1      1      6
  RIF1 WILD-TYPE     43     57     63     37
D708V1, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIF1 MUTATED        6      2      3
  RIF1 WILD-TYPE     45     81     74
D708V2, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED       24     10      4      1
  RIF1 WILD-TYPE    154    173     97     19
D708V3, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1           24            154
  CLUS_2           10            173
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIF1 MUTATED       10      7     12
  RIF1 WILD-TYPE     77     73     88
D708V4, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1           10             77
  CLUS_2            7             73
  CLUS_3           12             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIF1 MUTATED        8     10     19
  RIF1 WILD-TYPE     81    150    119
D708V5, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            8             81
  CLUS_2           10            150
  CLUS_3           19            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIF1 MUTATED       22     11      4
  RIF1 WILD-TYPE    160    122     68
D708V6, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1           22            160
  CLUS_2           11            122
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        7     11     10     13
  RIF1 WILD-TYPE    105     85     82    173
D708V7, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            7            105
  CLUS_2           11             85
  CLUS_3           10             82
  CLUS_4           13            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIF1 MUTATED        3      9      9      3      5      3      9
  RIF1 WILD-TYPE     57     41     40     37     58    122     90
D708V8, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            9             41
  CLUS_3            9             40
  CLUS_4            3             37
  CLUS_5            5             58
  CLUS_6            3            122
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED       17      6      2     15
  RIF1 WILD-TYPE    113     72     66    181
D708V9, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1           17            113
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4           15            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RIF1 MUTATED        6      7      6      5      8      2      2      1      3
  RIF1 WILD-TYPE     34     55     22     75     61     46     41     27     71
D708V10, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            7             55
  CLUS_3            6             22
  CLUS_4            5             75
  CLUS_5            8             61
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        4      1      1      4
  RIF1 WILD-TYPE     29     30     26     15
D708V11, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        7      0      1      2
  RIF1 WILD-TYPE     47     10     23     20
D708V12, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            7             47
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(709) Variable = LAS1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAS1L MUTATED        2      0      1      0
  LAS1L WILD-TYPE     44     58     63     43
D709V1, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAS1L MUTATED        2      0      1
  LAS1L WILD-TYPE     49     83     76
D709V2, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAS1L MUTATED        7      3      1      0
  LAS1L WILD-TYPE    171    180    100     20
D709V3, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAS1L MUTATED        5      0      3
  LAS1L WILD-TYPE     82     80     97
D709V4, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAS1L MUTATED        1      6      3
  LAS1L WILD-TYPE     88    154    135
D709V5, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAS1L MUTATED        3      4      3
  LAS1L WILD-TYPE    179    129     69
D709V6, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAS1L MUTATED        1      4      3      3
  LAS1L WILD-TYPE    111     92     89    183
D709V7, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAS1L MUTATED        1      2      3      2      0      1      2
  LAS1L WILD-TYPE     59     48     46     38     63    124     97
D709V8, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAS1L MUTATED        7      0      0      3
  LAS1L WILD-TYPE    123     78     68    193
D709V9, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LAS1L MUTATED        2      1      1      0      4      0      2      0
  LAS1L WILD-TYPE     38     61     27     80     65     48     41     28
                 vv
clus              CLUS_9
  LAS1L MUTATED        0
  LAS1L WILD-TYPE     74
D709V10, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAS1L MUTATED        2      0      0      2
  LAS1L WILD-TYPE     31     31     27     17
D709V11, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAS1L MUTATED        2      0      2      0
  LAS1L WILD-TYPE     52     10     22     22
D709V12, multiclass
        clus
vv       LAS1L MUTATED LAS1L WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(710) Variable = HSD17B11 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B11 MUTATED        0      0      0      0
  HSD17B11 WILD-TYPE     46     58     64     43
D710V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSD17B11 MUTATED        0      0      0
  HSD17B11 WILD-TYPE     51     83     77
D710V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B11 MUTATED        1      3      1      0
  HSD17B11 WILD-TYPE    177    180    100     20
D710V3, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                1                177
  CLUS_2                3                180
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSD17B11 MUTATED        2      2      1
  HSD17B11 WILD-TYPE     85     78     99
D710V4, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                2                 78
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSD17B11 MUTATED        0      0      4
  HSD17B11 WILD-TYPE     89    160    134
D710V5, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                0                160
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSD17B11 MUTATED        4      0      0
  HSD17B11 WILD-TYPE    178    133     72
D710V6, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                0                133
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B11 MUTATED        3      1      1      0
  HSD17B11 WILD-TYPE    109     95     91    186
D710V7, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSD17B11 MUTATED        1      1      1      1      1      0      0
  HSD17B11 WILD-TYPE     59     49     48     39     62    125     99
D710V8, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B11 MUTATED        3      1      1      0
  HSD17B11 WILD-TYPE    127     77     67    196
D710V9, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                0                196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HSD17B11 MUTATED        1      1      1      0      1      1      0      0
  HSD17B11 WILD-TYPE     39     61     27     80     68     47     43     28
                    vv
clus                 CLUS_9
  HSD17B11 MUTATED        0
  HSD17B11 WILD-TYPE     74
D710V10, multiclass
        clus
vv       HSD17B11 MUTATED HSD17B11 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B11 MUTATED        1      0      1      0
  HSD17B11 WILD-TYPE     32     31     26     19
D710V11, multiclass
[1] "Remove cluster labels:" "HSD17B11 MUTATED"      
clus
  HSD17B11 MUTATED HSD17B11 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6624 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B11 MUTATED        0      0      1      1
  HSD17B11 WILD-TYPE     54     10     23     21
D710V12, multiclass
[1] "Remove cluster labels:" "HSD17B11 MUTATED"      
clus
  HSD17B11 MUTATED HSD17B11 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6624 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" "HSD17B11 WILD-TYPE" 

Clustering(711) Variable = RHEB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      0      0      0
  RHEB WILD-TYPE     46     58     64     43
D711V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        0      0      0
  RHEB WILD-TYPE     51     83     77
D711V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        3      2      0      0
  RHEB WILD-TYPE    175    181    101     20
D711V3, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        3      0      2
  RHEB WILD-TYPE     84     80     98
D711V4, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        1      2      1
  RHEB WILD-TYPE     88    158    137
D711V5, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHEB MUTATED        1      3      0
  RHEB WILD-TYPE    181    130     72
D711V6, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        0      3      2      0
  RHEB WILD-TYPE    112     93     90    186
D711V7, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHEB MUTATED        0      2      1      1      1      0      0
  RHEB WILD-TYPE     60     48     48     39     62    125     99
D711V8, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        3      1      0      1
  RHEB WILD-TYPE    127     77     68    195
D711V9, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RHEB MUTATED        0      1      0      1      1      0      1      0      1
  RHEB WILD-TYPE     40     61     28     79     68     48     42     28     73
D711V10, multiclass
        clus
vv       RHEB MUTATED RHEB WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        1      0      0      0
  RHEB WILD-TYPE     32     31     27     19
D711V11, multiclass
[1] "Remove cluster labels:" "RHEB MUTATED"          
clus
  RHEB MUTATED RHEB WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6628     TCGA-G5-6235 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G5-6641 
"RHEB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHEB MUTATED        1      0      0      0
  RHEB WILD-TYPE     53     10     24     22
D711V12, multiclass
[1] "Remove cluster labels:" "RHEB MUTATED"          
clus
  RHEB MUTATED RHEB WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6628     TCGA-G5-6235 
"RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" "RHEB WILD-TYPE" 
    TCGA-G5-6641 
"RHEB WILD-TYPE" 

Clustering(712) Variable = KIAA0406 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        2      1      2      1
  KIAA0406 WILD-TYPE     44     57     62     42
D712V1, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                1                 57
  CLUS_3                2                 62
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED        3      3      0
  KIAA0406 WILD-TYPE     48     80     77
D712V2, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                3                 80
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED       10      4      1      0
  KIAA0406 WILD-TYPE    168    179    100     20
D712V3, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1               10                168
  CLUS_2                4                179
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED        3      1      5
  KIAA0406 WILD-TYPE     84     79     95
D712V4, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                1                 79
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED        4      3      7
  KIAA0406 WILD-TYPE     85    157    131
D712V5, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2                3                157
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED       10      2      2
  KIAA0406 WILD-TYPE    172    131     70
D712V6, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1               10                172
  CLUS_2                2                131
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        1      4      5      5
  KIAA0406 WILD-TYPE    111     92     87    181
D712V7, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                4                 92
  CLUS_3                5                 87
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0406 MUTATED        0      0      6      0      3      3      3
  KIAA0406 WILD-TYPE     60     50     43     40     60    122     96
D712V8, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                6                 43
  CLUS_4                0                 40
  CLUS_5                3                 60
  CLUS_6                3                122
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        5      4      0      4
  KIAA0406 WILD-TYPE    125     74     68    192
D712V9, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                4                 74
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0406 MUTATED        1      3      0      0      7      0      0      0
  KIAA0406 WILD-TYPE     39     59     28     80     62     48     43     28
                    vv
clus                 CLUS_9
  KIAA0406 MUTATED        2
  KIAA0406 WILD-TYPE     72
D712V10, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        1      1      0      3
  KIAA0406 WILD-TYPE     32     30     27     16
D712V11, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        3      1      1      0
  KIAA0406 WILD-TYPE     51      9     23     22
D712V12, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                1                  9
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(713) Variable = LRRC23 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC23 MUTATED        0      0      0      0
  LRRC23 WILD-TYPE     46     58     64     43
D713V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC23 MUTATED        0      0      0
  LRRC23 WILD-TYPE     51     83     77
D713V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC23 MUTATED        4      3      2      0
  LRRC23 WILD-TYPE    174    180     99     20
D713V3, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC23 MUTATED        4      1      4
  LRRC23 WILD-TYPE     83     79     96
D713V4, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC23 MUTATED        0      4      4
  LRRC23 WILD-TYPE     89    156    134
D713V5, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC23 MUTATED        4      4      0
  LRRC23 WILD-TYPE    178    129     72
D713V6, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC23 MUTATED        3      2      4      0
  LRRC23 WILD-TYPE    109     94     88    186
D713V7, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRC23 MUTATED        2      1      2      2      2      0      0
  LRRC23 WILD-TYPE     58     49     47     38     61    125     99
D713V8, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC23 MUTATED        5      3      0      1
  LRRC23 WILD-TYPE    125     75     68    195
D713V9, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRC23 MUTATED        2      3      1      0      1      0      2      0
  LRRC23 WILD-TYPE     38     59     27     80     68     48     41     28
                  vv
clus               CLUS_9
  LRRC23 MUTATED        0
  LRRC23 WILD-TYPE     74
D713V10, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC23 MUTATED        2      1      0      1
  LRRC23 WILD-TYPE     31     30     27     18
D713V11, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC23 MUTATED        3      0      1      0
  LRRC23 WILD-TYPE     51     10     23     22
D713V12, multiclass
        clus
vv       LRRC23 MUTATED LRRC23 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(714) Variable = FAM179A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM179A MUTATED        4      0      0      1
  FAM179A WILD-TYPE     42     58     64     42
D714V1, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM179A MUTATED        4      0      1
  FAM179A WILD-TYPE     47     83     76
D714V2, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM179A MUTATED       21      2      5      1
  FAM179A WILD-TYPE    157    181     96     19
D714V3, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1              21               157
  CLUS_2               2               181
  CLUS_3               5                96
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM179A MUTATED        9      2     13
  FAM179A WILD-TYPE     78     78     87
D714V4, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               9                78
  CLUS_2               2                78
  CLUS_3              13                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM179A MUTATED        1     12     13
  FAM179A WILD-TYPE     88    148    125
D714V5, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               1                88
  CLUS_2              12               148
  CLUS_3              13               125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM179A MUTATED       15     10      1
  FAM179A WILD-TYPE    167    123     71
D714V6, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1              15               167
  CLUS_2              10               123
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM179A MUTATED        2     11      9      7
  FAM179A WILD-TYPE    110     85     83    179
D714V7, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               2               110
  CLUS_2              11                85
  CLUS_3               9                83
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM179A MUTATED        3      3     13      1      3      0      6
  FAM179A WILD-TYPE     57     47     36     39     60    125     93
D714V8, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               3                57
  CLUS_2               3                47
  CLUS_3              13                36
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM179A MUTATED       14      4      2      9
  FAM179A WILD-TYPE    116     74     66    187
D714V9, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1              14               116
  CLUS_2               4                74
  CLUS_3               2                66
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM179A MUTATED        2      6      2      3     12      1      0      1
  FAM179A WILD-TYPE     38     56     26     77     57     47     43     27
                   vv
clus                CLUS_9
  FAM179A MUTATED        2
  FAM179A WILD-TYPE     72
D714V10, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               2                38
  CLUS_2               6                56
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5              12                57
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM179A MUTATED        1      2      2      7
  FAM179A WILD-TYPE     32     29     25     12
D714V11, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               2                25
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM179A MUTATED        6      0      6      0
  FAM179A WILD-TYPE     48     10     18     22
D714V12, multiclass
        clus
vv       FAM179A MUTATED FAM179A WILD-TYPE
  CLUS_1               6                48
  CLUS_2               0                10
  CLUS_3               6                18
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(715) Variable = OR2V2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2V2 MUTATED        1      0      0      0
  OR2V2 WILD-TYPE     45     58     64     43
D715V1, multiclass
[1] "Remove cluster labels:" "OR2V2 MUTATED"         
clus
  OR2V2 MUTATED OR2V2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2V2 MUTATED        1      0      0
  OR2V2 WILD-TYPE     50     83     77
D715V2, multiclass
[1] "Remove cluster labels:" "OR2V2 MUTATED"         
clus
  OR2V2 MUTATED OR2V2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"OR2V2 WILD-TYPE" "OR2V2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2V2 MUTATED        3      2      1      0
  OR2V2 WILD-TYPE    175    181    100     20
D715V3, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2V2 MUTATED        2      1      3
  OR2V2 WILD-TYPE     85     79     97
D715V4, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2V2 MUTATED        1      2      3
  OR2V2 WILD-TYPE     88    158    135
D715V5, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2V2 MUTATED        4      1      1
  OR2V2 WILD-TYPE    178    132     71
D715V6, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2V2 MUTATED        1      2      2      1
  OR2V2 WILD-TYPE    111     94     90    185
D715V7, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2V2 MUTATED        0      0      2      1      2      0      1
  OR2V2 WILD-TYPE     60     50     47     39     61    125     98
D715V8, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2V2 MUTATED        4      1      0      1
  OR2V2 WILD-TYPE    126     77     68    195
D715V9, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2V2 MUTATED        0      1      0      2      2      0      1      0
  OR2V2 WILD-TYPE     40     61     28     78     67     48     42     28
                 vv
clus              CLUS_9
  OR2V2 MUTATED        0
  OR2V2 WILD-TYPE     74
D715V10, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2V2 MUTATED        0      2      0      1
  OR2V2 WILD-TYPE     33     29     27     18
D715V11, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2V2 MUTATED        2      0      1      0
  OR2V2 WILD-TYPE     52     10     23     22
D715V12, multiclass
        clus
vv       OR2V2 MUTATED OR2V2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(716) Variable = WNK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK1 MUTATED        3      0      1      3
  WNK1 WILD-TYPE     43     58     63     40
D716V1, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK1 MUTATED        4      1      2
  WNK1 WILD-TYPE     47     82     75
D716V2, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK1 MUTATED       13      4      3      1
  WNK1 WILD-TYPE    165    179     98     19
D716V3, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            4            179
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK1 MUTATED        2      4      8
  WNK1 WILD-TYPE     85     76     92
D716V4, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            4             76
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK1 MUTATED        1      9      7
  WNK1 WILD-TYPE     88    151    131
D716V5, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            9            151
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK1 MUTATED        8      8      1
  WNK1 WILD-TYPE    174    125     71
D716V6, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            8            125
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK1 MUTATED        4      8      2      8
  WNK1 WILD-TYPE    108     88     90    178
D716V7, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            8             88
  CLUS_3            2             90
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WNK1 MUTATED        2      4      5      1      2      1      7
  WNK1 WILD-TYPE     58     46     44     39     61    124     92
D716V8, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            4             46
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK1 MUTATED        7      3      2      9
  WNK1 WILD-TYPE    123     75     66    187
D716V9, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WNK1 MUTATED        2      4      3      2      5      1      3      0      1
  WNK1 WILD-TYPE     38     58     25     78     64     47     40     28     73
D716V10, multiclass
        clus
vv       WNK1 MUTATED WNK1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK1 MUTATED        0      0      1      0
  WNK1 WILD-TYPE     33     31     26     19
D716V11, multiclass
[1] "Remove cluster labels:" "WNK1 MUTATED"          
clus
  WNK1 MUTATED WNK1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DG     TCGA-DY-A1H8 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-G5-6641 
"WNK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK1 MUTATED        0      1      0      0
  WNK1 WILD-TYPE     54      9     24     22
D716V12, multiclass
[1] "Remove cluster labels:" "WNK1 MUTATED"          
clus
  WNK1 MUTATED WNK1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DG     TCGA-DY-A1H8 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" "WNK1 WILD-TYPE" 
    TCGA-G5-6641 
"WNK1 WILD-TYPE" 

Clustering(717) Variable = FRS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRS3 MUTATED        0      1      0      0
  FRS3 WILD-TYPE     46     57     64     43
D717V1, multiclass
[1] "Remove cluster labels:" "FRS3 MUTATED"          
clus
  FRS3 MUTATED FRS3 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRS3 MUTATED        0      1      0
  FRS3 WILD-TYPE     51     82     77
D717V2, multiclass
[1] "Remove cluster labels:" "FRS3 MUTATED"          
clus
  FRS3 MUTATED FRS3 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"FRS3 WILD-TYPE" "FRS3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRS3 MUTATED        5      2      3      1
  FRS3 WILD-TYPE    173    181     98     19
D717V3, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRS3 MUTATED        5      1      3
  FRS3 WILD-TYPE     82     79     97
D717V4, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRS3 MUTATED        1      4      5
  FRS3 WILD-TYPE     88    156    133
D717V5, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRS3 MUTATED        5      4      1
  FRS3 WILD-TYPE    177    129     71
D717V6, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRS3 MUTATED        3      3      4      2
  FRS3 WILD-TYPE    109     93     88    184
D717V7, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FRS3 MUTATED        2      1      3      1      3      1      1
  FRS3 WILD-TYPE     58     49     46     39     60    124     98
D717V8, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRS3 MUTATED        3      3      3      3
  FRS3 WILD-TYPE    127     75     65    193
D717V9, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            3             65
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FRS3 MUTATED        1      2      1      2      2      0      2      0      2
  FRS3 WILD-TYPE     39     60     27     78     67     48     41     28     72
D717V10, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRS3 MUTATED        1      1      1      1
  FRS3 WILD-TYPE     32     30     26     18
D717V11, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRS3 MUTATED        0      0      1      3
  FRS3 WILD-TYPE     54     10     23     19
D717V12, multiclass
        clus
vv       FRS3 MUTATED FRS3 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(718) Variable = EEF1D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        0      0      0      0
  EEF1D WILD-TYPE     46     58     64     43
D718V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        0      0      0
  EEF1D WILD-TYPE     51     83     77
D718V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        9      1      1      1
  EEF1D WILD-TYPE    169    182    100     19
D718V3, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        5      1      6
  EEF1D WILD-TYPE     82     79     94
D718V4, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        3      3      6
  EEF1D WILD-TYPE     86    157    132
D718V5, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF1D MUTATED        8      2      2
  EEF1D WILD-TYPE    174    131     70
D718V6, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        2      7      3      0
  EEF1D WILD-TYPE    110     89     89    186
D718V7, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EEF1D MUTATED        0      2      6      3      1      0      0
  EEF1D WILD-TYPE     60     48     43     37     62    125     99
D718V8, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        7      2      1      2
  EEF1D WILD-TYPE    123     76     67    194
D718V9, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EEF1D MUTATED        3      4      0      0      1      1      3      0
  EEF1D WILD-TYPE     37     58     28     80     68     47     40     28
                 vv
clus              CLUS_9
  EEF1D MUTATED        0
  EEF1D WILD-TYPE     74
D718V10, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        2      0      1      2
  EEF1D WILD-TYPE     31     31     26     17
D718V11, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF1D MUTATED        3      0      1      1
  EEF1D WILD-TYPE     51     10     23     21
D718V12, multiclass
        clus
vv       EEF1D MUTATED EEF1D WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(719) Variable = DOCK10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        4      0      2      4
  DOCK10 WILD-TYPE     42     58     62     39
D719V1, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOCK10 MUTATED        5      3      2
  DOCK10 WILD-TYPE     46     80     75
D719V2, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED       17      5      4      2
  DOCK10 WILD-TYPE    161    178     97     18
D719V3, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              5              178
  CLUS_3              4               97
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOCK10 MUTATED        6      2     10
  DOCK10 WILD-TYPE     81     78     90
D719V4, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOCK10 MUTATED        4      8     11
  DOCK10 WILD-TYPE     85    152    127
D719V5, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              8              152
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOCK10 MUTATED       15      5      3
  DOCK10 WILD-TYPE    167    128     69
D719V6, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1             15              167
  CLUS_2              5              128
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        4      7      6     11
  DOCK10 WILD-TYPE    108     89     86    175
D719V7, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              7               89
  CLUS_3              6               86
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK10 MUTATED        3      2      5      5      3      3      7
  DOCK10 WILD-TYPE     57     48     44     35     60    122     92
D719V8, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              5               35
  CLUS_5              3               60
  CLUS_6              3              122
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        9      4      4     10
  DOCK10 WILD-TYPE    121     74     64    186
D719V9, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              4               64
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DOCK10 MUTATED        4      4      1      4      6      1      5      1
  DOCK10 WILD-TYPE     36     58     27     76     63     47     38     27
                  vv
clus               CLUS_9
  DOCK10 MUTATED        1
  DOCK10 WILD-TYPE     73
D719V10, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              5               38
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        2      2      2      3
  DOCK10 WILD-TYPE     31     29     25     16
D719V11, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK10 MUTATED        6      0      1      2
  DOCK10 WILD-TYPE     48     10     23     20
D719V12, multiclass
        clus
vv       DOCK10 MUTATED DOCK10 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(720) Variable = EXOC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        1      0      1      3
  EXOC4 WILD-TYPE     45     58     63     40
D720V1, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXOC4 MUTATED        3      0      2
  EXOC4 WILD-TYPE     48     83     75
D720V2, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED       15      3      2      0
  EXOC4 WILD-TYPE    163    180     99     20
D720V3, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXOC4 MUTATED        3      2     10
  EXOC4 WILD-TYPE     84     78     90
D720V4, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXOC4 MUTATED        4      6      8
  EXOC4 WILD-TYPE     85    154    130
D720V5, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXOC4 MUTATED        6      9      3
  EXOC4 WILD-TYPE    176    124     69
D720V6, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             9             124
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        2     10      4      4
  EXOC4 WILD-TYPE    110     86     88    182
D720V7, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2            10              86
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXOC4 MUTATED        2      6      6      1      1      0      4
  EXOC4 WILD-TYPE     58     44     43     39     62    125     95
D720V8, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             6              44
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        9      3      1      7
  EXOC4 WILD-TYPE    121     75     67    189
D720V9, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EXOC4 MUTATED        2      1      2      4      8      1      1      0
  EXOC4 WILD-TYPE     38     61     26     76     61     47     42     28
                 vv
clus              CLUS_9
  EXOC4 MUTATED        1
  EXOC4 WILD-TYPE     73
D720V10, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        1      1      0      2
  EXOC4 WILD-TYPE     32     30     27     17
D720V11, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC4 MUTATED        2      0      1      1
  EXOC4 WILD-TYPE     52     10     23     21
D720V12, multiclass
        clus
vv       EXOC4 MUTATED EXOC4 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(721) Variable = CEACAM1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM1 MUTATED        0      0      0      1
  CEACAM1 WILD-TYPE     46     58     64     42
D721V1, multiclass
[1] "Remove cluster labels:" "CEACAM1 MUTATED"       
clus
  CEACAM1 MUTATED CEACAM1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3526 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM1 MUTATED        1      0      0
  CEACAM1 WILD-TYPE     50     83     77
D721V2, multiclass
[1] "Remove cluster labels:" "CEACAM1 MUTATED"       
clus
  CEACAM1 MUTATED CEACAM1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3526 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CEACAM1 WILD-TYPE" "CEACAM1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM1 MUTATED        1      2      2      0
  CEACAM1 WILD-TYPE    177    181     99     20
D721V3, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               1               177
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM1 MUTATED        2      2      0
  CEACAM1 WILD-TYPE     85     78    100
D721V4, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM1 MUTATED        1      1      2
  CEACAM1 WILD-TYPE     88    159    136
D721V5, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM1 MUTATED        4      0      0
  CEACAM1 WILD-TYPE    178    133     72
D721V6, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               0               133
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM1 MUTATED        2      2      1      0
  CEACAM1 WILD-TYPE    110     94     91    186
D721V7, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEACAM1 MUTATED        1      0      0      1      2      0      1
  CEACAM1 WILD-TYPE     59     50     49     39     61    125     98
D721V8, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               0                49
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM1 MUTATED        1      2      1      1
  CEACAM1 WILD-TYPE    129     76     67    195
D721V9, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEACAM1 MUTATED        0      2      0      1      1      1      0      0
  CEACAM1 WILD-TYPE     40     60     28     79     68     47     43     28
                   vv
clus                CLUS_9
  CEACAM1 MUTATED        0
  CEACAM1 WILD-TYPE     74
D721V10, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM1 MUTATED        0      2      1      1
  CEACAM1 WILD-TYPE     33     29     26     18
D721V11, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM1 MUTATED        0      2      1      1
  CEACAM1 WILD-TYPE     54      8     23     21
D721V12, multiclass
        clus
vv       CEACAM1 MUTATED CEACAM1 WILD-TYPE
  CLUS_1               0                54
  CLUS_2               2                 8
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(722) Variable = EIF5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        2      0      0      0
  EIF5B WILD-TYPE     44     58     64     43
D722V1, multiclass
[1] "Remove cluster labels:" "EIF5B MUTATED"         
clus
  EIF5B MUTATED EIF5B WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AY-4071 
"EIF5B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        2      0      0
  EIF5B WILD-TYPE     49     83     77
D722V2, multiclass
[1] "Remove cluster labels:" "EIF5B MUTATED"         
clus
  EIF5B MUTATED EIF5B WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-AY-4071 
"EIF5B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED       14      1      1      0
  EIF5B WILD-TYPE    164    182    100     20
D722V3, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1            14             164
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        3      0     10
  EIF5B WILD-TYPE     84     80     90
D722V4, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        4      3      6
  EIF5B WILD-TYPE     85    157    132
D722V5, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        7      4      2
  EIF5B WILD-TYPE    175    129     70
D722V6, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        0      8      4      4
  EIF5B WILD-TYPE    112     88     88    182
D722V7, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             0             112
  CLUS_2             8              88
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF5B MUTATED        1      0      9      1      1      0      4
  EIF5B WILD-TYPE     59     50     40     39     62    125     95
D722V8, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        9      1      0      6
  EIF5B WILD-TYPE    121     77     68    190
D722V9, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             9             121
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF5B MUTATED        1      3      1      1      8      0      1      0
  EIF5B WILD-TYPE     39     59     27     79     61     48     42     28
                 vv
clus              CLUS_9
  EIF5B MUTATED        1
  EIF5B WILD-TYPE     73
D722V10, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        0      0      0      4
  EIF5B WILD-TYPE     33     31     27     15
D722V11, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        2      0      2      0
  EIF5B WILD-TYPE     52     10     22     22
D722V12, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(723) Variable = PRAMEF12 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF12 MUTATED        1      0      0      1
  PRAMEF12 WILD-TYPE     45     58     64     42
D723V1, multiclass
[1] "Remove cluster labels:" "PRAMEF12 MUTATED"      
clus
  PRAMEF12 MUTATED PRAMEF12 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3811         TCGA-AA-3812 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRAMEF12 MUTATED        1      0      1
  PRAMEF12 WILD-TYPE     50     83     76
D723V2, multiclass
[1] "Remove cluster labels:" "PRAMEF12 MUTATED"      
clus
  PRAMEF12 MUTATED PRAMEF12 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3811         TCGA-AA-3812 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"PRAMEF12 WILD-TYPE" "PRAMEF12 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF12 MUTATED        4      3      0      0
  PRAMEF12 WILD-TYPE    174    180    101     20
D723V3, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRAMEF12 MUTATED        2      1      2
  PRAMEF12 WILD-TYPE     85     79     98
D723V4, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRAMEF12 MUTATED        1      4      2
  PRAMEF12 WILD-TYPE     88    156    136
D723V5, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRAMEF12 MUTATED        1      4      2
  PRAMEF12 WILD-TYPE    181    129     70
D723V6, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                1                181
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF12 MUTATED        2      2      1      2
  PRAMEF12 WILD-TYPE    110     94     91    184
D723V7, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                2                 94
  CLUS_3                1                 91
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRAMEF12 MUTATED        1      1      2      0      2      0      1
  PRAMEF12 WILD-TYPE     59     49     47     40     61    125     98
D723V8, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF12 MUTATED        3      2      0      2
  PRAMEF12 WILD-TYPE    127     76     68    194
D723V9, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRAMEF12 MUTATED        0      2      0      1      4      0      0      0
  PRAMEF12 WILD-TYPE     40     60     28     79     65     48     43     28
                    vv
clus                 CLUS_9
  PRAMEF12 MUTATED        0
  PRAMEF12 WILD-TYPE     74
D723V10, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF12 MUTATED        1      1      1      1
  PRAMEF12 WILD-TYPE     32     30     26     18
D723V11, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF12 MUTATED        1      1      2      0
  PRAMEF12 WILD-TYPE     53      9     22     22
D723V12, multiclass
        clus
vv       PRAMEF12 MUTATED PRAMEF12 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                  9
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(724) Variable = SF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        2      0      0      2
  SF1 WILD-TYPE     44     58     64     41
D724V1, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        3      0      1
  SF1 WILD-TYPE     48     83     76
D724V2, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           3            48
  CLUS_2           0            83
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED       10      5      1      0
  SF1 WILD-TYPE    168    178    100     20
D724V3, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1          10           168
  CLUS_2           5           178
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        4      4      2
  SF1 WILD-TYPE     83     76     98
D724V4, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           4            83
  CLUS_2           4            76
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        1      4      8
  SF1 WILD-TYPE     88    156    130
D724V5, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           1            88
  CLUS_2           4           156
  CLUS_3           8           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SF1 MUTATED        7      5      1
  SF1 WILD-TYPE    175    128     71
D724V6, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           7           175
  CLUS_2           5           128
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        4      3      4      5
  SF1 WILD-TYPE    108     93     88    181
D724V7, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           4           108
  CLUS_2           3            93
  CLUS_3           4            88
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SF1 MUTATED        2      1      4      0      5      0      4
  SF1 WILD-TYPE     58     49     45     40     58    125     95
D724V8, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           2            58
  CLUS_2           1            49
  CLUS_3           4            45
  CLUS_4           0            40
  CLUS_5           5            58
  CLUS_6           0           125
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        4      5      1      6
  SF1 WILD-TYPE    126     73     67    190
D724V9, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           4           126
  CLUS_2           5            73
  CLUS_3           1            67
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SF1 MUTATED        0      5      0      3      7      0      0      0      1
  SF1 WILD-TYPE     40     57     28     77     62     48     43     28     73
D724V10, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           0            40
  CLUS_2           5            57
  CLUS_3           0            28
  CLUS_4           3            77
  CLUS_5           7            62
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        1      2      1      1
  SF1 WILD-TYPE     32     29     26     18
D724V11, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           1            32
  CLUS_2           2            29
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF1 MUTATED        4      1      0      0
  SF1 WILD-TYPE     50      9     24     22
D724V12, multiclass
        clus
vv       SF1 MUTATED SF1 WILD-TYPE
  CLUS_1           4            50
  CLUS_2           1             9
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(725) Variable = BTNL3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        0      0      0      1
  BTNL3 WILD-TYPE     46     58     64     42
D725V1, multiclass
[1] "Remove cluster labels:" "BTNL3 MUTATED"         
clus
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL3 MUTATED        0      0      1
  BTNL3 WILD-TYPE     51     83     76
D725V2, multiclass
[1] "Remove cluster labels:" "BTNL3 MUTATED"         
clus
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        8      0      0      0
  BTNL3 WILD-TYPE    170    183    101     20
D725V3, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL3 MUTATED        3      0      4
  BTNL3 WILD-TYPE     84     80     96
D725V4, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL3 MUTATED        0      3      5
  BTNL3 WILD-TYPE     89    157    133
D725V5, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL3 MUTATED        6      2      0
  BTNL3 WILD-TYPE    176    131     72
D725V6, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        0      5      2      1
  BTNL3 WILD-TYPE    112     91     90    185
D725V7, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTNL3 MUTATED        1      0      6      0      1      0      0
  BTNL3 WILD-TYPE     59     50     43     40     62    125     99
D725V8, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        4      2      0      2
  BTNL3 WILD-TYPE    126     76     68    194
D725V9, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BTNL3 MUTATED        1      3      0      0      3      0      1      0
  BTNL3 WILD-TYPE     39     59     28     80     66     48     42     28
                 vv
clus              CLUS_9
  BTNL3 MUTATED        0
  BTNL3 WILD-TYPE     74
D725V10, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        1      0      0      0
  BTNL3 WILD-TYPE     32     31     27     19
D725V11, multiclass
[1] "Remove cluster labels:" "BTNL3 MUTATED"         
clus
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-G5-6641 
"BTNL3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        1      0      0      0
  BTNL3 WILD-TYPE     53     10     24     22
D725V12, multiclass
[1] "Remove cluster labels:" "BTNL3 MUTATED"         
clus
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" "BTNL3 WILD-TYPE" 
     TCGA-G5-6641 
"BTNL3 WILD-TYPE" 

Clustering(726) Variable = EFCAB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB1 MUTATED        0      1      0      2
  EFCAB1 WILD-TYPE     46     57     64     41
D726V1, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFCAB1 MUTATED        1      1      1
  EFCAB1 WILD-TYPE     50     82     76
D726V2, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB1 MUTATED        3      2      0      0
  EFCAB1 WILD-TYPE    175    181    101     20
D726V3, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFCAB1 MUTATED        0      1      1
  EFCAB1 WILD-TYPE     87     79     99
D726V4, multiclass
[1] "Remove cluster labels:" "EFCAB1 MUTATED"        
clus
  EFCAB1 MUTATED EFCAB1 WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AF-2693       TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-4681       TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CK-4948       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G5-6641 
"EFCAB1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFCAB1 MUTATED        0      1      3
  EFCAB1 WILD-TYPE     89    159    135
D726V5, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFCAB1 MUTATED        3      1      0
  EFCAB1 WILD-TYPE    179    132     72
D726V6, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB1 MUTATED        1      1      0      3
  EFCAB1 WILD-TYPE    111     95     92    183
D726V7, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              0               92
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFCAB1 MUTATED        1      0      0      1      1      1      1
  EFCAB1 WILD-TYPE     59     50     49     39     62    124     98
D726V8, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB1 MUTATED        1      0      2      1
  EFCAB1 WILD-TYPE    129     78     66    195
D726V9, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              2               66
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFCAB1 MUTATED        1      1      0      1      1      0      0      0
  EFCAB1 WILD-TYPE     39     61     28     79     68     48     43     28
                  vv
clus               CLUS_9
  EFCAB1 MUTATED        0
  EFCAB1 WILD-TYPE     74
D726V10, multiclass
        clus
vv       EFCAB1 MUTATED EFCAB1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB1 MUTATED        0      0      1      0
  EFCAB1 WILD-TYPE     33     31     26     19
D726V11, multiclass
[1] "Remove cluster labels:" "EFCAB1 MUTATED"        
clus
  EFCAB1 MUTATED EFCAB1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G5-6641 
"EFCAB1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB1 MUTATED        0      1      0      0
  EFCAB1 WILD-TYPE     54      9     24     22
D726V12, multiclass
[1] "Remove cluster labels:" "EFCAB1 MUTATED"        
clus
  EFCAB1 MUTATED EFCAB1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" "EFCAB1 WILD-TYPE" 
      TCGA-G5-6641 
"EFCAB1 WILD-TYPE" 

Clustering(727) Variable = IKZF4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKZF4 MUTATED        1      0      0      0
  IKZF4 WILD-TYPE     45     58     64     43
D727V1, multiclass
[1] "Remove cluster labels:" "IKZF4 MUTATED"         
clus
  IKZF4 MUTATED IKZF4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKZF4 MUTATED        1      0      0
  IKZF4 WILD-TYPE     50     83     77
D727V2, multiclass
[1] "Remove cluster labels:" "IKZF4 MUTATED"         
clus
  IKZF4 MUTATED IKZF4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"IKZF4 WILD-TYPE" "IKZF4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKZF4 MUTATED        7      4      1      1
  IKZF4 WILD-TYPE    171    179    100     19
D727V3, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKZF4 MUTATED        4      4      4
  IKZF4 WILD-TYPE     83     76     96
D727V4, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             4              76
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKZF4 MUTATED        2      6      4
  IKZF4 WILD-TYPE     87    154    134
D727V5, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKZF4 MUTATED        7      4      1
  IKZF4 WILD-TYPE    175    129     71
D727V6, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKZF4 MUTATED        4      6      2      1
  IKZF4 WILD-TYPE    108     90     90    185
D727V7, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IKZF4 MUTATED        0      5      3      1      3      0      1
  IKZF4 WILD-TYPE     60     45     46     39     60    125     98
D727V8, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             5              45
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKZF4 MUTATED        6      5      1      1
  IKZF4 WILD-TYPE    124     73     67    195
D727V9, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IKZF4 MUTATED        3      4      1      0      1      2      2      0
  IKZF4 WILD-TYPE     37     58     27     80     68     46     41     28
                 vv
clus              CLUS_9
  IKZF4 MUTATED        0
  IKZF4 WILD-TYPE     74
D727V10, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKZF4 MUTATED        2      3      1      1
  IKZF4 WILD-TYPE     31     28     26     18
D727V11, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKZF4 MUTATED        5      0      1      1
  IKZF4 WILD-TYPE     49     10     23     21
D727V12, multiclass
        clus
vv       IKZF4 MUTATED IKZF4 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(728) Variable = ZNF564 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF564 MUTATED        1      0      0      3
  ZNF564 WILD-TYPE     45     58     64     40
D728V1, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF564 MUTATED        2      2      0
  ZNF564 WILD-TYPE     49     81     77
D728V2, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF564 MUTATED        8      2      2      0
  ZNF564 WILD-TYPE    170    181     99     20
D728V3, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF564 MUTATED        4      0      4
  ZNF564 WILD-TYPE     83     80     96
D728V4, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF564 MUTATED        1      4      4
  ZNF564 WILD-TYPE     88    156    134
D728V5, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF564 MUTATED        4      4      1
  ZNF564 WILD-TYPE    178    129     71
D728V6, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF564 MUTATED        2      4      2      4
  ZNF564 WILD-TYPE    110     92     90    182
D728V7, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF564 MUTATED        1      1      3      0      2      1      4
  ZNF564 WILD-TYPE     59     49     46     40     61    124     95
D728V8, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF564 MUTATED        3      3      1      4
  ZNF564 WILD-TYPE    127     75     67    192
D728V9, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF564 MUTATED        0      2      2      1      4      0      2      0
  ZNF564 WILD-TYPE     40     60     26     79     65     48     41     28
                  vv
clus               CLUS_9
  ZNF564 MUTATED        0
  ZNF564 WILD-TYPE     74
D728V10, multiclass
        clus
vv       ZNF564 MUTATED ZNF564 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF564 MUTATED        0      0      1      1
  ZNF564 WILD-TYPE     33     31     26     18
D728V11, multiclass
[1] "Remove cluster labels:" "ZNF564 MUTATED"        
clus
  ZNF564 MUTATED ZNF564 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6683 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF564 MUTATED        1      0      0      1
  ZNF564 WILD-TYPE     53     10     24     21
D728V12, multiclass
[1] "Remove cluster labels:" "ZNF564 MUTATED"        
clus
  ZNF564 MUTATED ZNF564 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6683 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" "ZNF564 WILD-TYPE" 

Clustering(729) Variable = SLC46A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC46A3 MUTATED        1      1      0      2
  SLC46A3 WILD-TYPE     45     57     64     41
D729V1, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC46A3 MUTATED        1      2      1
  SLC46A3 WILD-TYPE     50     81     76
D729V2, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC46A3 MUTATED        8      1      0      0
  SLC46A3 WILD-TYPE    170    182    101     20
D729V3, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC46A3 MUTATED        4      0      1
  SLC46A3 WILD-TYPE     83     80     99
D729V4, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC46A3 MUTATED        0      4      3
  SLC46A3 WILD-TYPE     89    156    135
D729V5, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC46A3 MUTATED        3      4      0
  SLC46A3 WILD-TYPE    179    129     72
D729V6, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC46A3 MUTATED        0      1      3      5
  SLC46A3 WILD-TYPE    112     95     89    181
D729V7, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                95
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC46A3 MUTATED        1      1      2      0      1      0      4
  SLC46A3 WILD-TYPE     59     49     47     40     62    125     95
D729V8, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC46A3 MUTATED        2      2      0      5
  SLC46A3 WILD-TYPE    128     76     68    191
D729V9, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC46A3 MUTATED        0      3      1      1      2      0      0      1
  SLC46A3 WILD-TYPE     40     59     27     79     67     48     43     27
                   vv
clus                CLUS_9
  SLC46A3 MUTATED        1
  SLC46A3 WILD-TYPE     73
D729V10, multiclass
        clus
vv       SLC46A3 MUTATED SLC46A3 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC46A3 MUTATED        1      0      0      0
  SLC46A3 WILD-TYPE     32     31     27     19
D729V11, multiclass
[1] "Remove cluster labels:" "SLC46A3 MUTATED"       
clus
  SLC46A3 MUTATED SLC46A3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-G5-6641 
"SLC46A3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC46A3 MUTATED        1      0      0      0
  SLC46A3 WILD-TYPE     53     10     24     22
D729V12, multiclass
[1] "Remove cluster labels:" "SLC46A3 MUTATED"       
clus
  SLC46A3 MUTATED SLC46A3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" "SLC46A3 WILD-TYPE" 
       TCGA-G5-6641 
"SLC46A3 WILD-TYPE" 

Clustering(730) Variable = VAV3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV3 MUTATED        4      0      1      2
  VAV3 WILD-TYPE     42     58     63     41
D730V1, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV3 MUTATED        3      3      1
  VAV3 WILD-TYPE     48     80     76
D730V2, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV3 MUTATED       19      4      3      1
  VAV3 WILD-TYPE    159    179     98     19
D730V3, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1           19            159
  CLUS_2            4            179
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV3 MUTATED        9      3      7
  VAV3 WILD-TYPE     78     77     93
D730V4, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            3             77
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV3 MUTATED        2      6     15
  VAV3 WILD-TYPE     87    154    123
D730V5, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3           15            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VAV3 MUTATED       11      9      3
  VAV3 WILD-TYPE    171    124     69
D730V6, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            9            124
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV3 MUTATED        3     11      4      9
  VAV3 WILD-TYPE    109     85     88    177
D730V7, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2           11             85
  CLUS_3            4             88
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VAV3 MUTATED        3      4      4      5      3      3      5
  VAV3 WILD-TYPE     57     46     45     35     60    122     94
D730V8, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3            4             45
  CLUS_4            5             35
  CLUS_5            3             60
  CLUS_6            3            122
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV3 MUTATED        9      7      1     10
  VAV3 WILD-TYPE    121     71     67    186
D730V9, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            7             71
  CLUS_3            1             67
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VAV3 MUTATED        5      5      3      3      6      0      2      2      1
  VAV3 WILD-TYPE     35     57     25     77     63     48     41     26     73
D730V10, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            5             57
  CLUS_3            3             25
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV3 MUTATED        4      0      0      1
  VAV3 WILD-TYPE     29     31     27     18
D730V11, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VAV3 MUTATED        5      0      0      0
  VAV3 WILD-TYPE     49     10     24     22
D730V12, multiclass
        clus
vv       VAV3 MUTATED VAV3 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(731) Variable = RPGRIP1L MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPGRIP1L MUTATED        4      0      0      4
  RPGRIP1L WILD-TYPE     42     58     64     39
D731V1, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RPGRIP1L MUTATED        4      2      2
  RPGRIP1L WILD-TYPE     47     81     75
D731V2, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPGRIP1L MUTATED       13      3      2      0
  RPGRIP1L WILD-TYPE    165    180     99     20
D731V3, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1               13                165
  CLUS_2                3                180
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RPGRIP1L MUTATED        4      3      3
  RPGRIP1L WILD-TYPE     83     77     97
D731V4, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                3                 77
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RPGRIP1L MUTATED        1      5      8
  RPGRIP1L WILD-TYPE     88    155    130
D731V5, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                5                155
  CLUS_3                8                130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RPGRIP1L MUTATED        8      4      2
  RPGRIP1L WILD-TYPE    174    129     70
D731V6, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                8                174
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPGRIP1L MUTATED        3      5      2      8
  RPGRIP1L WILD-TYPE    109     91     90    178
D731V7, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                3                109
  CLUS_2                5                 91
  CLUS_3                2                 90
  CLUS_4                8                178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPGRIP1L MUTATED        3      1      4      2      0      2      6
  RPGRIP1L WILD-TYPE     57     49     45     38     63    123     93
D731V8, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                1                 49
  CLUS_3                4                 45
  CLUS_4                2                 38
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPGRIP1L MUTATED        6      2      1      8
  RPGRIP1L WILD-TYPE    124     76     67    188
D731V9, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                6                124
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                8                188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RPGRIP1L MUTATED        1      2      2      3      6      0      2      1
  RPGRIP1L WILD-TYPE     39     60     26     77     63     48     41     27
                    vv
clus                 CLUS_9
  RPGRIP1L MUTATED        0
  RPGRIP1L WILD-TYPE     74
D731V10, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                3                 77
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPGRIP1L MUTATED        3      0      0      3
  RPGRIP1L WILD-TYPE     30     31     27     16
D731V11, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPGRIP1L MUTATED        2      0      3      1
  RPGRIP1L WILD-TYPE     52     10     21     21
D731V12, multiclass
        clus
vv       RPGRIP1L MUTATED RPGRIP1L WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                3                 21
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(732) Variable = GATA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA1 MUTATED        4      0      0      1
  GATA1 WILD-TYPE     42     58     64     42
D732V1, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA1 MUTATED        3      1      1
  GATA1 WILD-TYPE     48     82     76
D732V2, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA1 MUTATED        9      4      3      1
  GATA1 WILD-TYPE    169    179     98     19
D732V3, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA1 MUTATED        3      4      4
  GATA1 WILD-TYPE     84     76     96
D732V4, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4              76
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA1 MUTATED        2      5      5
  GATA1 WILD-TYPE     87    155    133
D732V5, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA1 MUTATED        5      5      2
  GATA1 WILD-TYPE    177    128     70
D732V6, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA1 MUTATED        5      4      2      6
  GATA1 WILD-TYPE    107     92     90    180
D732V7, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GATA1 MUTATED        2      3      5      0      2      1      4
  GATA1 WILD-TYPE     58     47     44     40     61    124     95
D732V8, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA1 MUTATED        9      1      0      7
  GATA1 WILD-TYPE    121     77     68    189
D732V9, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GATA1 MUTATED        2      2      1      2      8      1      1      0
  GATA1 WILD-TYPE     38     60     27     78     61     47     42     28
                 vv
clus              CLUS_9
  GATA1 MUTATED        0
  GATA1 WILD-TYPE     74
D732V10, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA1 MUTATED        1      1      0      1
  GATA1 WILD-TYPE     32     30     27     18
D732V11, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA1 MUTATED        2      1      0      0
  GATA1 WILD-TYPE     52      9     24     22
D732V12, multiclass
        clus
vv       GATA1 MUTATED GATA1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(733) Variable = KIF21B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21B MUTATED        1      0      0      4
  KIF21B WILD-TYPE     45     58     64     39
D733V1, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21B MUTATED        4      1      0
  KIF21B WILD-TYPE     47     82     77
D733V2, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21B MUTATED       18      2      2      3
  KIF21B WILD-TYPE    160    181     99     17
D733V3, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1             18              160
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21B MUTATED        9      2      9
  KIF21B WILD-TYPE     78     78     91
D733V4, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              9               78
  CLUS_2              2               78
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21B MUTATED        5      5     13
  KIF21B WILD-TYPE     84    155    125
D733V5, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              5               84
  CLUS_2              5              155
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21B MUTATED       18      3      2
  KIF21B WILD-TYPE    164    130     70
D733V6, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1             18              164
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21B MUTATED        3     10      7      5
  KIF21B WILD-TYPE    109     86     85    181
D733V7, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              3              109
  CLUS_2             10               86
  CLUS_3              7               85
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF21B MUTATED        1      2     10      4      3      0      5
  KIF21B WILD-TYPE     59     48     39     36     60    125     94
D733V8, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3             10               39
  CLUS_4              4               36
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21B MUTATED       12      6      0      6
  KIF21B WILD-TYPE    118     72     68    190
D733V9, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1             12              118
  CLUS_2              6               72
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF21B MUTATED        4      6      2      3      7      0      2      0
  KIF21B WILD-TYPE     36     56     26     77     62     48     41     28
                  vv
clus               CLUS_9
  KIF21B MUTATED        0
  KIF21B WILD-TYPE     74
D733V10, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              4               36
  CLUS_2              6               56
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21B MUTATED        2      4      1      1
  KIF21B WILD-TYPE     31     27     26     18
D733V11, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              4               27
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21B MUTATED        3      2      1      2
  KIF21B WILD-TYPE     51      8     23     20
D733V12, multiclass
        clus
vv       KIF21B MUTATED KIF21B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              2                8
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(734) Variable = HELQ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELQ MUTATED        1      0      0      4
  HELQ WILD-TYPE     45     58     64     39
D734V1, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELQ MUTATED        3      1      1
  HELQ WILD-TYPE     48     82     76
D734V2, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELQ MUTATED       15      2      3      0
  HELQ WILD-TYPE    163    181     98     20
D734V3, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1           15            163
  CLUS_2            2            181
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELQ MUTATED        3      6      6
  HELQ WILD-TYPE     84     74     94
D734V4, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            3             84
  CLUS_2            6             74
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELQ MUTATED        1      9      6
  HELQ WILD-TYPE     88    151    132
D734V5, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            1             88
  CLUS_2            9            151
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HELQ MUTATED        7      9      0
  HELQ WILD-TYPE    175    124     72
D734V6, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            7            175
  CLUS_2            9            124
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELQ MUTATED        5      4      5      6
  HELQ WILD-TYPE    107     92     87    180
D734V7, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            5            107
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HELQ MUTATED        2      4      6      0      3      0      5
  HELQ WILD-TYPE     58     46     43     40     60    125     94
D734V8, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            2             58
  CLUS_2            4             46
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELQ MUTATED        9      2      1      7
  HELQ WILD-TYPE    121     76     67    189
D734V9, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            9            121
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HELQ MUTATED        2      4      3      0      6      0      2      0      2
  HELQ WILD-TYPE     38     58     25     80     63     48     41     28     72
D734V10, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELQ MUTATED        0      1      1      4
  HELQ WILD-TYPE     33     30     26     15
D734V11, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HELQ MUTATED        2      1      3      0
  HELQ WILD-TYPE     52      9     21     22
D734V12, multiclass
        clus
vv       HELQ MUTATED HELQ WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(735) Variable = ZNF799 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF799 MUTATED        0      0      0      2
  ZNF799 WILD-TYPE     46     58     64     41
D735V1, multiclass
[1] "Remove cluster labels:" "ZNF799 MUTATED"        
clus
  ZNF799 MUTATED ZNF799 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF799 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF799 MUTATED        0      1      1
  ZNF799 WILD-TYPE     51     82     76
D735V2, multiclass
[1] "Remove cluster labels:" "ZNF799 MUTATED"        
clus
  ZNF799 MUTATED ZNF799 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" "ZNF799 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF799 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF799 MUTATED        3      1      3      0
  ZNF799 WILD-TYPE    175    182     98     20
D735V3, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF799 MUTATED        1      2      2
  ZNF799 WILD-TYPE     86     78     98
D735V4, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF799 MUTATED        0      5      1
  ZNF799 WILD-TYPE     89    155    137
D735V5, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF799 MUTATED        0      5      1
  ZNF799 WILD-TYPE    182    128     71
D735V6, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              0              182
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF799 MUTATED        2      3      0      2
  ZNF799 WILD-TYPE    110     93     92    184
D735V7, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF799 MUTATED        3      3      0      0      0      0      1
  ZNF799 WILD-TYPE     57     47     49     40     63    125     98
D735V8, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF799 MUTATED        3      0      1      3
  ZNF799 WILD-TYPE    127     78     67    193
D735V9, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF799 MUTATED        1      0      3      1      1      0      0      0
  ZNF799 WILD-TYPE     39     62     25     79     68     48     43     28
                  vv
clus               CLUS_9
  ZNF799 MUTATED        1
  ZNF799 WILD-TYPE     73
D735V10, multiclass
        clus
vv       ZNF799 MUTATED ZNF799 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF799 MUTATED        0      0      0      0
  ZNF799 WILD-TYPE     33     31     27     19
D735V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF799 MUTATED        0      0      0      0
  ZNF799 WILD-TYPE     54     10     24     22
D735V12, multiclass

Clustering(736) Variable = CACHD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACHD1 MUTATED        6      2      0      5
  CACHD1 WILD-TYPE     40     56     64     38
D736V1, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              6               40
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CACHD1 MUTATED        6      4      3
  CACHD1 WILD-TYPE     45     79     74
D736V2, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              6               45
  CLUS_2              4               79
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACHD1 MUTATED       18      5      4      0
  CACHD1 WILD-TYPE    160    178     97     20
D736V3, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              5              178
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CACHD1 MUTATED        8      3      3
  CACHD1 WILD-TYPE     79     77     97
D736V4, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CACHD1 MUTATED        2      6     13
  CACHD1 WILD-TYPE     87    154    125
D736V5, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CACHD1 MUTATED       12      6      3
  CACHD1 WILD-TYPE    170    127     69
D736V6, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACHD1 MUTATED        5      4      5     13
  CACHD1 WILD-TYPE    107     92     87    173
D736V7, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4             13              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CACHD1 MUTATED        5      3      5      1      1      3      9
  CACHD1 WILD-TYPE     55     47     44     39     62    122     90
D736V8, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              3               47
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              3              122
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACHD1 MUTATED        8      3      2     12
  CACHD1 WILD-TYPE    122     75     66    184
D736V9, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CACHD1 MUTATED        4      3      2      4      7      1      3      0
  CACHD1 WILD-TYPE     36     59     26     76     62     47     40     28
                  vv
clus               CLUS_9
  CACHD1 MUTATED        1
  CACHD1 WILD-TYPE     73
D736V10, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              4               76
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACHD1 MUTATED        2      0      1      2
  CACHD1 WILD-TYPE     31     31     26     17
D736V11, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACHD1 MUTATED        3      0      1      1
  CACHD1 WILD-TYPE     51     10     23     21
D736V12, multiclass
        clus
vv       CACHD1 MUTATED CACHD1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(737) Variable = CCDC93 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC93 MUTATED        2      0      1      2
  CCDC93 WILD-TYPE     44     58     63     41
D737V1, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC93 MUTATED        0      2      3
  CCDC93 WILD-TYPE     51     81     74
D737V2, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC93 MUTATED        7      4      1      0
  CCDC93 WILD-TYPE    171    179    100     20
D737V3, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC93 MUTATED        2      1      4
  CCDC93 WILD-TYPE     85     79     96
D737V4, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC93 MUTATED        0      8      3
  CCDC93 WILD-TYPE     89    152    135
D737V5, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              8              152
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC93 MUTATED        2      9      0
  CCDC93 WILD-TYPE    180    124     72
D737V6, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              9              124
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC93 MUTATED        2      4      1      5
  CCDC93 WILD-TYPE    110     92     91    181
D737V7, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC93 MUTATED        2      1      3      1      1      2      2
  CCDC93 WILD-TYPE     58     49     46     39     62    123     97
D737V8, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC93 MUTATED        4      2      1      5
  CCDC93 WILD-TYPE    126     76     67    191
D737V9, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC93 MUTATED        2      1      2      1      4      0      1      0
  CCDC93 WILD-TYPE     38     61     26     79     65     48     42     28
                  vv
clus               CLUS_9
  CCDC93 MUTATED        1
  CCDC93 WILD-TYPE     73
D737V10, multiclass
        clus
vv       CCDC93 MUTATED CCDC93 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC93 MUTATED        0      0      0      1
  CCDC93 WILD-TYPE     33     31     27     18
D737V11, multiclass
[1] "Remove cluster labels:" "CCDC93 MUTATED"        
clus
  CCDC93 MUTATED CCDC93 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-G5-6641 
"CCDC93 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC93 MUTATED        0      0      1      0
  CCDC93 WILD-TYPE     54     10     23     22
D737V12, multiclass
[1] "Remove cluster labels:" "CCDC93 MUTATED"        
clus
  CCDC93 MUTATED CCDC93 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" "CCDC93 WILD-TYPE" 
      TCGA-G5-6641 
"CCDC93 WILD-TYPE" 

Clustering(738) Variable = SYNRG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNRG MUTATED        2      0      0      3
  SYNRG WILD-TYPE     44     58     64     40
D738V1, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNRG MUTATED        5      0      0
  SYNRG WILD-TYPE     46     83     77
D738V2, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNRG MUTATED       13      2      2      1
  SYNRG WILD-TYPE    165    181     99     19
D738V3, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNRG MUTATED        9      0      4
  SYNRG WILD-TYPE     78     80     96
D738V4, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             9              78
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNRG MUTATED        3      4     10
  SYNRG WILD-TYPE     86    156    128
D738V5, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNRG MUTATED       12      4      1
  SYNRG WILD-TYPE    170    129     71
D738V6, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1            12             170
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNRG MUTATED        2      6      5      5
  SYNRG WILD-TYPE    110     90     87    181
D738V7, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNRG MUTATED        1      2      5      2      2      1      5
  SYNRG WILD-TYPE     59     48     44     38     61    124     94
D738V8, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNRG MUTATED        5      5      2      6
  SYNRG WILD-TYPE    125     73     66    190
D738V9, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             5             125
  CLUS_2             5              73
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SYNRG MUTATED        2      5      0      1      5      0      4      1
  SYNRG WILD-TYPE     38     57     28     79     64     48     39     27
                 vv
clus              CLUS_9
  SYNRG MUTATED        0
  SYNRG WILD-TYPE     74
D738V10, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             4              39
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNRG MUTATED        1      1      2      3
  SYNRG WILD-TYPE     32     30     25     16
D738V11, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNRG MUTATED        3      1      2      1
  SYNRG WILD-TYPE     51      9     22     21
D738V12, multiclass
        clus
vv       SYNRG MUTATED SYNRG WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(739) Variable = TRIM33 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM33 MUTATED        1      1      0      5
  TRIM33 WILD-TYPE     45     57     64     38
D739V1, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM33 MUTATED        3      1      3
  TRIM33 WILD-TYPE     48     82     74
D739V2, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM33 MUTATED       14      4      1      1
  TRIM33 WILD-TYPE    164    179    100     19
D739V3, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM33 MUTATED        3      4      6
  TRIM33 WILD-TYPE     84     76     94
D739V4, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM33 MUTATED        1      9      9
  TRIM33 WILD-TYPE     88    151    129
D739V5, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              9              151
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM33 MUTATED       10      7      2
  TRIM33 WILD-TYPE    172    126     70
D739V6, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM33 MUTATED        5      7      3      5
  TRIM33 WILD-TYPE    107     89     89    181
D739V7, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              7               89
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM33 MUTATED        4      1      9      0      0      2      4
  TRIM33 WILD-TYPE     56     49     40     40     63    123     95
D739V8, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              9               40
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM33 MUTATED        8      1      2      8
  TRIM33 WILD-TYPE    122     77     66    188
D739V9, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM33 MUTATED        1      2      1      2     10      2      1      0
  TRIM33 WILD-TYPE     39     60     27     78     59     46     42     28
                  vv
clus               CLUS_9
  TRIM33 MUTATED        0
  TRIM33 WILD-TYPE     74
D739V10, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5             10               59
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM33 MUTATED        0      0      1      2
  TRIM33 WILD-TYPE     33     31     26     17
D739V11, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM33 MUTATED        0      0      3      0
  TRIM33 WILD-TYPE     54     10     21     22
D739V12, multiclass
        clus
vv       TRIM33 MUTATED TRIM33 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(740) Variable = LPIN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN2 MUTATED        1      1      0      2
  LPIN2 WILD-TYPE     45     57     64     41
D740V1, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPIN2 MUTATED        0      3      1
  LPIN2 WILD-TYPE     51     80     76
D740V2, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN2 MUTATED        7      0      3      0
  LPIN2 WILD-TYPE    171    183     98     20
D740V3, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPIN2 MUTATED        4      1      1
  LPIN2 WILD-TYPE     83     79     99
D740V4, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPIN2 MUTATED        0      3      5
  LPIN2 WILD-TYPE     89    157    133
D740V5, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPIN2 MUTATED        4      4      0
  LPIN2 WILD-TYPE    178    129     72
D740V6, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN2 MUTATED        1      3      3      3
  LPIN2 WILD-TYPE    111     93     89    183
D740V7, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LPIN2 MUTATED        2      1      3      0      1      2      1
  LPIN2 WILD-TYPE     58     49     46     40     62    123     98
D740V8, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN2 MUTATED        3      2      0      5
  LPIN2 WILD-TYPE    127     76     68    191
D740V9, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LPIN2 MUTATED        0      3      1      2      1      1      1      0
  LPIN2 WILD-TYPE     40     59     27     78     68     47     42     28
                 vv
clus              CLUS_9
  LPIN2 MUTATED        1
  LPIN2 WILD-TYPE     73
D740V10, multiclass
        clus
vv       LPIN2 MUTATED LPIN2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN2 MUTATED        0      1      0      0
  LPIN2 WILD-TYPE     33     30     27     19
D740V11, multiclass
[1] "Remove cluster labels:" "LPIN2 MUTATED"         
clus
  LPIN2 MUTATED LPIN2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-G5-6641 
"LPIN2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPIN2 MUTATED        0      1      0      0
  LPIN2 WILD-TYPE     54      9     24     22
D740V12, multiclass
[1] "Remove cluster labels:" "LPIN2 MUTATED"         
clus
  LPIN2 MUTATED LPIN2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" "LPIN2 WILD-TYPE" 
     TCGA-G5-6641 
"LPIN2 WILD-TYPE" 

Clustering(741) Variable = ING1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING1 MUTATED        2      1      0      2
  ING1 WILD-TYPE     44     57     64     41
D741V1, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING1 MUTATED        2      2      1
  ING1 WILD-TYPE     49     81     76
D741V2, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING1 MUTATED        7      3      2      0
  ING1 WILD-TYPE    171    180     99     20
D741V3, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING1 MUTATED        0      1      5
  ING1 WILD-TYPE     87     79     95
D741V4, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING1 MUTATED        2      4      3
  ING1 WILD-TYPE     87    156    135
D741V5, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING1 MUTATED        5      3      1
  ING1 WILD-TYPE    177    130     71
D741V6, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING1 MUTATED        1      5      1      5
  ING1 WILD-TYPE    111     91     91    181
D741V7, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ING1 MUTATED        0      1      3      1      1      2      4
  ING1 WILD-TYPE     60     49     46     39     62    123     95
D741V8, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING1 MUTATED        4      0      3      5
  ING1 WILD-TYPE    126     78     65    191
D741V9, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            3             65
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ING1 MUTATED        1      0      3      1      3      0      1      1      2
  ING1 WILD-TYPE     39     62     25     79     66     48     42     27     72
D741V10, multiclass
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING1 MUTATED        0      0      1      1
  ING1 WILD-TYPE     33     31     26     18
D741V11, multiclass
[1] "Remove cluster labels:" "ING1 MUTATED"          
clus
  ING1 MUTATED ING1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING1 MUTATED        1      1      0      0
  ING1 WILD-TYPE     53      9     24     22
D741V12, multiclass
[1] "Remove cluster labels:" "ING1 MUTATED"          
clus
  ING1 MUTATED ING1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 

Clustering(742) Variable = TAB3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB3 MUTATED        1      0      0      2
  TAB3 WILD-TYPE     45     58     64     41
D742V1, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB3 MUTATED        2      0      1
  TAB3 WILD-TYPE     49     83     76
D742V2, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB3 MUTATED        5      2      6      0
  TAB3 WILD-TYPE    173    181     95     20
D742V3, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB3 MUTATED        5      3      1
  TAB3 WILD-TYPE     82     77     99
D742V4, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            3             77
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB3 MUTATED        2      3      4
  TAB3 WILD-TYPE     87    157    134
D742V5, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB3 MUTATED        4      3      2
  TAB3 WILD-TYPE    178    130     70
D742V6, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB3 MUTATED        4      1      4      4
  TAB3 WILD-TYPE    108     95     88    182
D742V7, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            1             95
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAB3 MUTATED        0      2      2      2      3      0      4
  TAB3 WILD-TYPE     60     48     47     38     60    125     95
D742V8, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB3 MUTATED        4      4      1      3
  TAB3 WILD-TYPE    126     74     67    193
D742V9, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TAB3 MUTATED        0      3      2      4      2      0      1      0      0
  TAB3 WILD-TYPE     40     59     26     76     67     48     42     28     74
D742V10, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB3 MUTATED        0      2      1      2
  TAB3 WILD-TYPE     33     29     26     17
D742V11, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB3 MUTATED        4      0      1      0
  TAB3 WILD-TYPE     50     10     23     22
D742V12, multiclass
        clus
vv       TAB3 MUTATED TAB3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(743) Variable = ZFP3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP3 MUTATED        3      0      0      5
  ZFP3 WILD-TYPE     43     58     64     38
D743V1, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP3 MUTATED        5      1      2
  ZFP3 WILD-TYPE     46     82     75
D743V2, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP3 MUTATED       11      1      0      0
  ZFP3 WILD-TYPE    167    182    101     20
D743V3, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP3 MUTATED        2      0      2
  ZFP3 WILD-TYPE     85     80     98
D743V4, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP3 MUTATED        0      8      2
  ZFP3 WILD-TYPE     89    152    136
D743V5, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            8            152
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP3 MUTATED        4      5      1
  ZFP3 WILD-TYPE    178    128     71
D743V6, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP3 MUTATED        0      3      1      8
  ZFP3 WILD-TYPE    112     93     91    178
D743V7, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFP3 MUTATED        1      1      1      0      1      0      8
  ZFP3 WILD-TYPE     59     49     48     40     62    125     91
D743V8, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP3 MUTATED        1      1      1      9
  ZFP3 WILD-TYPE    129     77     67    187
D743V9, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZFP3 MUTATED        1      1      2      0      5      0      1      1      1
  ZFP3 WILD-TYPE     39     61     26     80     64     48     42     27     73
D743V10, multiclass
        clus
vv       ZFP3 MUTATED ZFP3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP3 MUTATED        0      0      0      0
  ZFP3 WILD-TYPE     33     31     27     19
D743V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP3 MUTATED        0      0      0      0
  ZFP3 WILD-TYPE     54     10     24     22
D743V12, multiclass

Clustering(744) Variable = ULK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK1 MUTATED        0      0      0      0
  ULK1 WILD-TYPE     46     58     64     43
D744V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ULK1 MUTATED        0      0      0
  ULK1 WILD-TYPE     51     83     77
D744V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK1 MUTATED        8      1      2      0
  ULK1 WILD-TYPE    170    182     99     20
D744V3, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ULK1 MUTATED        3      0      8
  ULK1 WILD-TYPE     84     80     92
D744V4, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ULK1 MUTATED        0      5      5
  ULK1 WILD-TYPE     89    155    133
D744V5, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ULK1 MUTATED        5      4      1
  ULK1 WILD-TYPE    177    129     71
D744V6, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK1 MUTATED        2      6      3      0
  ULK1 WILD-TYPE    110     90     89    186
D744V7, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ULK1 MUTATED        1      2      6      1      1      0      0
  ULK1 WILD-TYPE     59     48     43     39     62    125     99
D744V8, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK1 MUTATED        6      2      0      3
  ULK1 WILD-TYPE    124     76     68    193
D744V9, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ULK1 MUTATED        2      2      1      2      3      0      1      0      0
  ULK1 WILD-TYPE     38     60     27     78     66     48     42     28     74
D744V10, multiclass
        clus
vv       ULK1 MUTATED ULK1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK1 MUTATED        0      1      0      1
  ULK1 WILD-TYPE     33     30     27     18
D744V11, multiclass
[1] "Remove cluster labels:" "ULK1 MUTATED"          
clus
  ULK1 MUTATED ULK1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK1 MUTATED        1      0      1      0
  ULK1 WILD-TYPE     53     10     23     22
D744V12, multiclass
[1] "Remove cluster labels:" "ULK1 MUTATED"          
clus
  ULK1 MUTATED ULK1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" "ULK1 WILD-TYPE" 

Clustering(745) Variable = CLDN10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN10 MUTATED        1      0      1      1
  CLDN10 WILD-TYPE     45     58     63     42
D745V1, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDN10 MUTATED        1      0      2
  CLDN10 WILD-TYPE     50     83     75
D745V2, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN10 MUTATED       11      1      1      0
  CLDN10 WILD-TYPE    167    182    100     20
D745V3, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDN10 MUTATED        5      1      4
  CLDN10 WILD-TYPE     82     79     96
D745V4, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDN10 MUTATED        2      7      3
  CLDN10 WILD-TYPE     87    153    135
D745V5, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDN10 MUTATED        4      7      1
  CLDN10 WILD-TYPE    178    126     71
D745V6, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN10 MUTATED        2      4      3      4
  CLDN10 WILD-TYPE    110     92     89    182
D745V7, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLDN10 MUTATED        3      1      5      0      0      0      4
  CLDN10 WILD-TYPE     57     49     44     40     63    125     95
D745V8, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN10 MUTATED        5      1      2      5
  CLDN10 WILD-TYPE    125     77     66    191
D745V9, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLDN10 MUTATED        0      3      1      0      5      1      1      0
  CLDN10 WILD-TYPE     40     59     27     80     64     47     42     28
                  vv
clus               CLUS_9
  CLDN10 MUTATED        2
  CLDN10 WILD-TYPE     72
D745V10, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN10 MUTATED        1      0      0      2
  CLDN10 WILD-TYPE     32     31     27     17
D745V11, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN10 MUTATED        2      0      1      0
  CLDN10 WILD-TYPE     52     10     23     22
D745V12, multiclass
        clus
vv       CLDN10 MUTATED CLDN10 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(746) Variable = RHPN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        2      0      0      3
  RHPN2 WILD-TYPE     44     58     64     40
D746V1, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        2      1      2
  RHPN2 WILD-TYPE     49     82     75
D746V2, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED       10      3      5      0
  RHPN2 WILD-TYPE    168    180     96     20
D746V3, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             3             180
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      5      5
  RHPN2 WILD-TYPE     84     75     95
D746V4, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5              75
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        2      9      5
  RHPN2 WILD-TYPE     87    151    133
D746V5, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        7      7      2
  RHPN2 WILD-TYPE    175    126     70
D746V6, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        4      6      3      5
  RHPN2 WILD-TYPE    108     90     89    181
D746V7, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHPN2 MUTATED        3      5      2      3      1      1      3
  RHPN2 WILD-TYPE     57     45     47     37     62    124     96
D746V8, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             5              45
  CLUS_3             2              47
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED       11      2      0      5
  RHPN2 WILD-TYPE    119     76     68    191
D746V9, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RHPN2 MUTATED        5      2      2      0      3      2      3      1
  RHPN2 WILD-TYPE     35     60     26     80     66     46     40     27
                 vv
clus              CLUS_9
  RHPN2 MUTATED        0
  RHPN2 WILD-TYPE     74
D746V10, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        0      1      0      1
  RHPN2 WILD-TYPE     33     30     27     18
D746V11, multiclass
[1] "Remove cluster labels:" "RHPN2 MUTATED"         
clus
  RHPN2 MUTATED RHPN2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6681      TCGA-DC-6682 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6460      TCGA-F4-6569 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        1      1      0      0
  RHPN2 WILD-TYPE     53      9     24     22
D746V12, multiclass
[1] "Remove cluster labels:" "RHPN2 MUTATED"         
clus
  RHPN2 MUTATED RHPN2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6681      TCGA-DC-6682 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6460      TCGA-F4-6569 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" "RHPN2 WILD-TYPE" 

Clustering(747) Variable = IL1RL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RL1 MUTATED        1      0      0      1
  IL1RL1 WILD-TYPE     45     58     64     42
D747V1, multiclass
[1] "Remove cluster labels:" "IL1RL1 MUTATED"        
clus
  IL1RL1 MUTATED IL1RL1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AY-4071 
"IL1RL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL1RL1 MUTATED        1      0      1
  IL1RL1 WILD-TYPE     50     83     76
D747V2, multiclass
[1] "Remove cluster labels:" "IL1RL1 MUTATED"        
clus
  IL1RL1 MUTATED IL1RL1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" "IL1RL1 WILD-TYPE" 
      TCGA-AY-4071 
"IL1RL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RL1 MUTATED        9      4      2      1
  IL1RL1 WILD-TYPE    169    179     99     19
D747V3, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL1RL1 MUTATED        8      2      3
  IL1RL1 WILD-TYPE     79     78     97
D747V4, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL1RL1 MUTATED        2      5      7
  IL1RL1 WILD-TYPE     87    155    131
D747V5, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IL1RL1 MUTATED        9      3      2
  IL1RL1 WILD-TYPE    173    130     70
D747V6, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RL1 MUTATED        2      4      7      3
  IL1RL1 WILD-TYPE    110     92     85    183
D747V7, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              7               85
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL1RL1 MUTATED        4      0      7      1      2      0      2
  IL1RL1 WILD-TYPE     56     50     42     39     61    125     97
D747V8, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RL1 MUTATED        6      6      1      3
  IL1RL1 WILD-TYPE    124     72     67    193
D747V9, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              6               72
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL1RL1 MUTATED        2      6      0      2      4      0      2      0
  IL1RL1 WILD-TYPE     38     56     28     78     65     48     41     28
                  vv
clus               CLUS_9
  IL1RL1 MUTATED        0
  IL1RL1 WILD-TYPE     74
D747V10, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RL1 MUTATED        4      1      0      2
  IL1RL1 WILD-TYPE     29     30     27     17
D747V11, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1RL1 MUTATED        6      0      1      0
  IL1RL1 WILD-TYPE     48     10     23     22
D747V12, multiclass
        clus
vv       IL1RL1 MUTATED IL1RL1 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(748) Variable = TOX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        4      0      2      4
  TOX WILD-TYPE     42     58     62     39
D748V1, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           4            42
  CLUS_2           0            58
  CLUS_3           2            62
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        5      2      3
  TOX WILD-TYPE     46     81     74
D748V2, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           5            46
  CLUS_2           2            81
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED       13      4      1      0
  TOX WILD-TYPE    165    179    100     20
D748V3, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1          13           165
  CLUS_2           4           179
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        4      1      3
  TOX WILD-TYPE     83     79     97
D748V4, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           4            83
  CLUS_2           1            79
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        2      6      8
  TOX WILD-TYPE     87    154    130
D748V5, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           2            87
  CLUS_2           6           154
  CLUS_3           8           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        5      7      4
  TOX WILD-TYPE    177    126     68
D748V6, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           5           177
  CLUS_2           7           126
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        3      4      1     10
  TOX WILD-TYPE    109     92     91    176
D748V7, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           3           109
  CLUS_2           4            92
  CLUS_3           1            91
  CLUS_4          10           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOX MUTATED        1      4      2      1      0      2      8
  TOX WILD-TYPE     59     46     47     39     63    123     91
D748V8, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           1            59
  CLUS_2           4            46
  CLUS_3           2            47
  CLUS_4           1            39
  CLUS_5           0            63
  CLUS_6           2           123
  CLUS_7           8            91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        2      1      3     11
  TOX WILD-TYPE    128     77     65    185
D748V9, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           2           128
  CLUS_2           1            77
  CLUS_3           3            65
  CLUS_4          11           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TOX MUTATED        0      1      1      2      7      1      2      0      3
  TOX WILD-TYPE     40     61     27     78     62     47     41     28     71
D748V10, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           0            40
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           2            78
  CLUS_5           7            62
  CLUS_6           1            47
  CLUS_7           2            41
  CLUS_8           0            28
  CLUS_9           3            71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        0      0      2      1
  TOX WILD-TYPE     33     31     25     18
D748V11, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           2            25
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        1      0      2      0
  TOX WILD-TYPE     53     10     22     22
D748V12, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           1            53
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(749) Variable = SNX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX2 MUTATED        1      1      1      2
  SNX2 WILD-TYPE     45     57     63     41
D749V1, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNX2 MUTATED        1      3      1
  SNX2 WILD-TYPE     50     80     76
D749V2, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX2 MUTATED       10      2      1      1
  SNX2 WILD-TYPE    168    181    100     19
D749V3, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNX2 MUTATED        5      0      4
  SNX2 WILD-TYPE     82     80     96
D749V4, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNX2 MUTATED        1      7      6
  SNX2 WILD-TYPE     88    153    132
D749V5, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            7            153
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNX2 MUTATED        7      5      2
  SNX2 WILD-TYPE    175    128     70
D749V6, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX2 MUTATED        1      1      6      6
  SNX2 WILD-TYPE    111     95     86    180
D749V7, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            6             86
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNX2 MUTATED        2      1      4      1      1      2      3
  SNX2 WILD-TYPE     58     49     45     39     62    123     96
D749V8, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX2 MUTATED        5      2      1      6
  SNX2 WILD-TYPE    125     76     67    190
D749V9, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SNX2 MUTATED        0      3      2      0      4      2      1      0      2
  SNX2 WILD-TYPE     40     59     26     80     65     46     42     28     72
D749V10, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX2 MUTATED        1      0      1      1
  SNX2 WILD-TYPE     32     31     26     18
D749V11, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX2 MUTATED        2      0      1      0
  SNX2 WILD-TYPE     52     10     23     22
D749V12, multiclass
        clus
vv       SNX2 MUTATED SNX2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(750) Variable = HDAC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC5 MUTATED        0      0      0      1
  HDAC5 WILD-TYPE     46     58     64     42
D750V1, multiclass
[1] "Remove cluster labels:" "HDAC5 MUTATED"         
clus
  HDAC5 MUTATED HDAC5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC5 MUTATED        0      0      1
  HDAC5 WILD-TYPE     51     83     76
D750V2, multiclass
[1] "Remove cluster labels:" "HDAC5 MUTATED"         
clus
  HDAC5 MUTATED HDAC5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"HDAC5 WILD-TYPE" "HDAC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC5 MUTATED        9      2      1      0
  HDAC5 WILD-TYPE    169    181    100     20
D750V3, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC5 MUTATED        5      1      4
  HDAC5 WILD-TYPE     82     79     96
D750V4, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC5 MUTATED        1      4      6
  HDAC5 WILD-TYPE     88    156    132
D750V5, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC5 MUTATED        6      4      1
  HDAC5 WILD-TYPE    176    129     71
D750V6, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC5 MUTATED        2      3      5      2
  HDAC5 WILD-TYPE    110     93     87    184
D750V7, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HDAC5 MUTATED        1      1      7      2      0      0      1
  HDAC5 WILD-TYPE     59     49     42     38     63    125     98
D750V8, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC5 MUTATED        5      4      0      3
  HDAC5 WILD-TYPE    125     74     68    193
D750V9, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HDAC5 MUTATED        1      6      0      0      4      1      0      0
  HDAC5 WILD-TYPE     39     56     28     80     65     47     43     28
                 vv
clus              CLUS_9
  HDAC5 MUTATED        0
  HDAC5 WILD-TYPE     74
D750V10, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC5 MUTATED        1      1      0      3
  HDAC5 WILD-TYPE     32     30     27     16
D750V11, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC5 MUTATED        4      0      1      0
  HDAC5 WILD-TYPE     50     10     23     22
D750V12, multiclass
        clus
vv       HDAC5 MUTATED HDAC5 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(751) Variable = IVNS1ABP MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVNS1ABP MUTATED        1      1      0      1
  IVNS1ABP WILD-TYPE     45     57     64     42
D751V1, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IVNS1ABP MUTATED        0      2      1
  IVNS1ABP WILD-TYPE     51     81     76
D751V2, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                0                 51
  CLUS_2                2                 81
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVNS1ABP MUTATED        6      3      4      1
  IVNS1ABP WILD-TYPE    172    180     97     19
D751V3, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                6                172
  CLUS_2                3                180
  CLUS_3                4                 97
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IVNS1ABP MUTATED        4      4      4
  IVNS1ABP WILD-TYPE     83     76     96
D751V4, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                4                 76
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IVNS1ABP MUTATED        1      4      4
  IVNS1ABP WILD-TYPE     88    156    134
D751V5, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  IVNS1ABP MUTATED        4      4      1
  IVNS1ABP WILD-TYPE    178    129     71
D751V6, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                4                178
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVNS1ABP MUTATED        4      3      5      2
  IVNS1ABP WILD-TYPE    108     93     87    184
D751V7, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                4                108
  CLUS_2                3                 93
  CLUS_3                5                 87
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IVNS1ABP MUTATED        3      1      2      2      4      2      0
  IVNS1ABP WILD-TYPE     57     49     47     38     59    123     99
D751V8, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                2                 38
  CLUS_5                4                 59
  CLUS_6                2                123
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVNS1ABP MUTATED        5      4      2      3
  IVNS1ABP WILD-TYPE    125     74     66    193
D751V9, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                5                125
  CLUS_2                4                 74
  CLUS_3                2                 66
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IVNS1ABP MUTATED        2      3      3      3      1      1      0      0
  IVNS1ABP WILD-TYPE     38     59     25     77     68     47     43     28
                    vv
clus                 CLUS_9
  IVNS1ABP MUTATED        1
  IVNS1ABP WILD-TYPE     73
D751V10, multiclass
        clus
vv       IVNS1ABP MUTATED IVNS1ABP WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                3                 25
  CLUS_4                3                 77
  CLUS_5                1                 68
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVNS1ABP MUTATED        1      0      1      0
  IVNS1ABP WILD-TYPE     32     31     26     19
D751V11, multiclass
[1] "Remove cluster labels:" "IVNS1ABP MUTATED"      
clus
  IVNS1ABP MUTATED IVNS1ABP WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6963         TCGA-AD-6964 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVNS1ABP MUTATED        1      0      1      0
  IVNS1ABP WILD-TYPE     53     10     23     22
D751V12, multiclass
[1] "Remove cluster labels:" "IVNS1ABP MUTATED"      
clus
  IVNS1ABP MUTATED IVNS1ABP WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6963         TCGA-AD-6964 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" "IVNS1ABP WILD-TYPE" 

Clustering(752) Variable = SNRNP200 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP200 MUTATED        3      1      1      3
  SNRNP200 WILD-TYPE     43     57     63     40
D752V1, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                1                 57
  CLUS_3                1                 63
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SNRNP200 MUTATED        4      3      1
  SNRNP200 WILD-TYPE     47     80     76
D752V2, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                3                 80
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP200 MUTATED       14      5      2      2
  SNRNP200 WILD-TYPE    164    178     99     18
D752V3, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                5                178
  CLUS_3                2                 99
  CLUS_4                2                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SNRNP200 MUTATED        8      2      5
  SNRNP200 WILD-TYPE     79     78     95
D752V4, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                2                 78
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SNRNP200 MUTATED        2      6     11
  SNRNP200 WILD-TYPE     87    154    127
D752V5, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                6                154
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SNRNP200 MUTATED        8      9      2
  SNRNP200 WILD-TYPE    174    124     70
D752V6, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                8                174
  CLUS_2                9                124
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP200 MUTATED        3      8      6      6
  SNRNP200 WILD-TYPE    109     88     86    180
D752V7, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                8                 88
  CLUS_3                6                 86
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNRNP200 MUTATED        4      4      1      3      4      2      5
  SNRNP200 WILD-TYPE     56     46     48     37     59    123     94
D752V8, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                4                 56
  CLUS_2                4                 46
  CLUS_3                1                 48
  CLUS_4                3                 37
  CLUS_5                4                 59
  CLUS_6                2                123
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP200 MUTATED        8      5      0      9
  SNRNP200 WILD-TYPE    122     73     68    187
D752V9, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                8                122
  CLUS_2                5                 73
  CLUS_3                0                 68
  CLUS_4                9                187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SNRNP200 MUTATED        2      4      1      5      5      2      2      0
  SNRNP200 WILD-TYPE     38     58     27     75     64     46     41     28
                    vv
clus                 CLUS_9
  SNRNP200 MUTATED        1
  SNRNP200 WILD-TYPE     73
D752V10, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                4                 58
  CLUS_3                1                 27
  CLUS_4                5                 75
  CLUS_5                5                 64
  CLUS_6                2                 46
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP200 MUTATED        1      2      0      2
  SNRNP200 WILD-TYPE     32     29     27     17
D752V11, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 29
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP200 MUTATED        3      0      0      2
  SNRNP200 WILD-TYPE     51     10     24     20
D752V12, multiclass
        clus
vv       SNRNP200 MUTATED SNRNP200 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(753) Variable = RFXAP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFXAP MUTATED        0      0      1      0
  RFXAP WILD-TYPE     46     58     63     43
D753V1, multiclass
[1] "Remove cluster labels:" "RFXAP MUTATED"         
clus
  RFXAP MUTATED RFXAP WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3530      TCGA-AA-3531 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFXAP MUTATED        0      0      1
  RFXAP WILD-TYPE     51     83     76
D753V2, multiclass
[1] "Remove cluster labels:" "RFXAP MUTATED"         
clus
  RFXAP MUTATED RFXAP WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3530      TCGA-AA-3531 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFXAP MUTATED        2      2      1      1
  RFXAP WILD-TYPE    176    181    100     19
D753V3, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFXAP MUTATED        4      1      0
  RFXAP WILD-TYPE     83     79    100
D753V4, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFXAP MUTATED        1      1      4
  RFXAP WILD-TYPE     88    159    134
D753V5, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RFXAP MUTATED        5      1      0
  RFXAP WILD-TYPE    177    132     72
D753V6, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFXAP MUTATED        1      1      3      1
  RFXAP WILD-TYPE    111     95     89    185
D753V7, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RFXAP MUTATED        1      0      1      1      2      1      0
  RFXAP WILD-TYPE     59     50     48     39     61    124     99
D753V8, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFXAP MUTATED        2      2      0      2
  RFXAP WILD-TYPE    128     76     68    194
D753V9, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RFXAP MUTATED        0      3      0      2      0      0      1      0
  RFXAP WILD-TYPE     40     59     28     78     69     48     42     28
                 vv
clus              CLUS_9
  RFXAP MUTATED        0
  RFXAP WILD-TYPE     74
D753V10, multiclass
        clus
vv       RFXAP MUTATED RFXAP WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFXAP MUTATED        0      2      0      0
  RFXAP WILD-TYPE     33     29     27     19
D753V11, multiclass
[1] "Remove cluster labels:" "RFXAP MUTATED"         
clus
  RFXAP MUTATED RFXAP WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601      TCGA-AZ-6603 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFXAP MUTATED        2      0      0      0
  RFXAP WILD-TYPE     52     10     24     22
D753V12, multiclass
[1] "Remove cluster labels:" "RFXAP MUTATED"         
clus
  RFXAP MUTATED RFXAP WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601      TCGA-AZ-6603 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" "RFXAP WILD-TYPE" 

Clustering(754) Variable = ABCF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCF3 MUTATED        1      0      0      2
  ABCF3 WILD-TYPE     45     58     64     41
D754V1, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCF3 MUTATED        3      0      0
  ABCF3 WILD-TYPE     48     83     77
D754V2, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCF3 MUTATED       12      2      1      0
  ABCF3 WILD-TYPE    166    181    100     20
D754V3, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCF3 MUTATED        5      3      5
  ABCF3 WILD-TYPE     82     77     95
D754V4, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCF3 MUTATED        3      6      7
  ABCF3 WILD-TYPE     86    154    131
D754V5, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCF3 MUTATED        9      5      2
  ABCF3 WILD-TYPE    173    128     70
D754V6, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCF3 MUTATED        2      7      4      3
  ABCF3 WILD-TYPE    110     89     88    183
D754V7, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCF3 MUTATED        1      3      5      1      2      0      4
  ABCF3 WILD-TYPE     59     47     44     39     61    125     95
D754V8, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCF3 MUTATED        6      4      0      6
  ABCF3 WILD-TYPE    124     74     68    190
D754V9, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABCF3 MUTATED        2      3      1      1      6      1      1      0
  ABCF3 WILD-TYPE     38     59     27     79     63     47     42     28
                 vv
clus              CLUS_9
  ABCF3 MUTATED        1
  ABCF3 WILD-TYPE     73
D754V10, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCF3 MUTATED        2      0      0      2
  ABCF3 WILD-TYPE     31     31     27     17
D754V11, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCF3 MUTATED        3      0      1      0
  ABCF3 WILD-TYPE     51     10     23     22
D754V12, multiclass
        clus
vv       ABCF3 MUTATED ABCF3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(755) Variable = ZMYM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        3      2      1      2
  ZMYM4 WILD-TYPE     43     56     63     41
D755V1, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        3      2      3
  ZMYM4 WILD-TYPE     48     81     74
D755V2, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED       13      2      3      1
  ZMYM4 WILD-TYPE    165    181     98     19
D755V3, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        4      1      6
  ZMYM4 WILD-TYPE     83     79     94
D755V4, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        1      8      5
  ZMYM4 WILD-TYPE     88    152    133
D755V5, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        6      3      5
  ZMYM4 WILD-TYPE    176    130     67
D755V6, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             3             130
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        4      6      3      6
  ZMYM4 WILD-TYPE    108     90     89    180
D755V7, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYM4 MUTATED        4      3      3      0      2      3      4
  ZMYM4 WILD-TYPE     56     47     46     40     61    122     95
D755V8, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        6      2      2      8
  ZMYM4 WILD-TYPE    124     76     66    188
D755V9, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZMYM4 MUTATED        2      3      2      1      3      2      3      1
  ZMYM4 WILD-TYPE     38     59     26     79     66     46     40     27
                 vv
clus              CLUS_9
  ZMYM4 MUTATED        1
  ZMYM4 WILD-TYPE     73
D755V10, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        0      0      2      0
  ZMYM4 WILD-TYPE     33     31     25     19
D755V11, multiclass
[1] "Remove cluster labels:" "ZMYM4 MUTATED"         
clus
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8      TCGA-EI-6506 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        0      0      1      1
  ZMYM4 WILD-TYPE     54     10     23     21
D755V12, multiclass
[1] "Remove cluster labels:" "ZMYM4 MUTATED"         
clus
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8      TCGA-EI-6506 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" "ZMYM4 WILD-TYPE" 

Clustering(756) Variable = WWC3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC3 MUTATED        4      0      0      4
  WWC3 WILD-TYPE     42     58     64     39
D756V1, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC3 MUTATED        5      1      2
  WWC3 WILD-TYPE     46     82     75
D756V2, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC3 MUTATED       20      5      2      0
  WWC3 WILD-TYPE    158    178     99     20
D756V3, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1           20            158
  CLUS_2            5            178
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC3 MUTATED        5      4     10
  WWC3 WILD-TYPE     82     76     90
D756V4, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            4             76
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC3 MUTATED        2      5     15
  WWC3 WILD-TYPE     87    155    123
D756V5, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3           15            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC3 MUTATED       14      6      2
  WWC3 WILD-TYPE    168    127     70
D756V6, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1           14            168
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC3 MUTATED        4      9      5      9
  WWC3 WILD-TYPE    108     87     87    177
D756V7, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            9             87
  CLUS_3            5             87
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WWC3 MUTATED        4      2      9      2      2      1      7
  WWC3 WILD-TYPE     56     48     40     38     61    124     92
D756V8, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            2             48
  CLUS_3            9             40
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC3 MUTATED       12      1      4      9
  WWC3 WILD-TYPE    118     77     64    187
D756V9, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1           12            118
  CLUS_2            1             77
  CLUS_3            4             64
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WWC3 MUTATED        1      2      3      3     10      0      4      2      1
  WWC3 WILD-TYPE     39     60     25     77     59     48     39     26     73
D756V10, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            3             25
  CLUS_4            3             77
  CLUS_5           10             59
  CLUS_6            0             48
  CLUS_7            4             39
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC3 MUTATED        2      1      1      4
  WWC3 WILD-TYPE     31     30     26     15
D756V11, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC3 MUTATED        3      0      4      1
  WWC3 WILD-TYPE     51     10     20     21
D756V12, multiclass
        clus
vv       WWC3 MUTATED WWC3 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            4             20
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(757) Variable = OR7C1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        1      0      2      3
  OR7C1 WILD-TYPE     45     58     62     40
D757V1, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        4      2      0
  OR7C1 WILD-TYPE     47     81     77
D757V2, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        7      2      2      0
  OR7C1 WILD-TYPE    171    181     99     20
D757V3, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        1      1      3
  OR7C1 WILD-TYPE     86     79     97
D757V4, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        4      1      2
  OR7C1 WILD-TYPE     85    159    136
D757V5, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        3      1      3
  OR7C1 WILD-TYPE    179    132     69
D757V6, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        1      1      3      6
  OR7C1 WILD-TYPE    111     95     89    180
D757V7, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR7C1 MUTATED        0      0      2      0      3      2      4
  OR7C1 WILD-TYPE     60     50     47     40     60    123     95
D757V8, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        1      3      1      6
  OR7C1 WILD-TYPE    129     75     67    190
D757V9, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR7C1 MUTATED        0      3      1      1      4      0      0      0
  OR7C1 WILD-TYPE     40     59     27     79     65     48     43     28
                 vv
clus              CLUS_9
  OR7C1 MUTATED        2
  OR7C1 WILD-TYPE     72
D757V10, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        1      1      0      1
  OR7C1 WILD-TYPE     32     30     27     18
D757V11, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        3      0      0      0
  OR7C1 WILD-TYPE     51     10     24     22
D757V12, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(758) Variable = GRM7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM7 MUTATED        4      3      1      3
  GRM7 WILD-TYPE     42     55     63     40
D758V1, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            3             55
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM7 MUTATED        3      4      4
  GRM7 WILD-TYPE     48     79     73
D758V2, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            4             79
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM7 MUTATED       18      5      6      1
  GRM7 WILD-TYPE    160    178     95     19
D758V3, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            5            178
  CLUS_3            6             95
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM7 MUTATED        7      5      8
  GRM7 WILD-TYPE     80     75     92
D758V4, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            5             75
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM7 MUTATED        4      9     11
  GRM7 WILD-TYPE     85    151    127
D758V5, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            9            151
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM7 MUTATED       12      6      6
  GRM7 WILD-TYPE    170    127     66
D758V6, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            6            127
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM7 MUTATED        4      9      8      9
  GRM7 WILD-TYPE    108     87     84    177
D758V7, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            9             87
  CLUS_3            8             84
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRM7 MUTATED        3      3      8      2      4      6      4
  GRM7 WILD-TYPE     57     47     41     38     59    119     95
D758V8, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            8             41
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            6            119
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM7 MUTATED       13      6      0      9
  GRM7 WILD-TYPE    117     72     68    187
D758V9, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            6             72
  CLUS_3            0             68
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GRM7 MUTATED        5      3      1      7      6      1      2      1      2
  GRM7 WILD-TYPE     35     59     27     73     63     47     41     27     72
D758V10, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            7             73
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM7 MUTATED        1      2      0      4
  GRM7 WILD-TYPE     32     29     27     15
D758V11, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM7 MUTATED        6      0      1      0
  GRM7 WILD-TYPE     48     10     23     22
D758V12, multiclass
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(759) Variable = RANBP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP1 MUTATED        0      0      0      0
  RANBP1 WILD-TYPE     46     58     64     43
D759V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP1 MUTATED        0      0      0
  RANBP1 WILD-TYPE     51     83     77
D759V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP1 MUTATED        4      2      0      0
  RANBP1 WILD-TYPE    174    181    101     20
D759V3, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP1 MUTATED        3      0      3
  RANBP1 WILD-TYPE     84     80     97
D759V4, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP1 MUTATED        0      2      4
  RANBP1 WILD-TYPE     89    158    134
D759V5, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP1 MUTATED        3      2      1
  RANBP1 WILD-TYPE    179    131     71
D759V6, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP1 MUTATED        1      4      1      0
  RANBP1 WILD-TYPE    111     92     91    186
D759V7, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RANBP1 MUTATED        0      2      3      0      1      0      0
  RANBP1 WILD-TYPE     60     48     46     40     62    125     99
D759V8, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP1 MUTATED        3      1      0      2
  RANBP1 WILD-TYPE    127     77     68    194
D759V9, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RANBP1 MUTATED        2      1      0      0      1      1      0      0
  RANBP1 WILD-TYPE     38     61     28     80     68     47     43     28
                  vv
clus               CLUS_9
  RANBP1 MUTATED        1
  RANBP1 WILD-TYPE     73
D759V10, multiclass
        clus
vv       RANBP1 MUTATED RANBP1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP1 MUTATED        1      1      0      0
  RANBP1 WILD-TYPE     32     30     27     19
D759V11, multiclass
[1] "Remove cluster labels:" "RANBP1 MUTATED"        
clus
  RANBP1 MUTATED RANBP1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6569 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP1 MUTATED        1      0      0      1
  RANBP1 WILD-TYPE     53     10     24     21
D759V12, multiclass
[1] "Remove cluster labels:" "RANBP1 MUTATED"        
clus
  RANBP1 MUTATED RANBP1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6569 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" "RANBP1 WILD-TYPE" 

Clustering(760) Variable = PAK7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK7 MUTATED        1      1      0      4
  PAK7 WILD-TYPE     45     57     64     39
D760V1, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK7 MUTATED        2      1      3
  PAK7 WILD-TYPE     49     82     74
D760V2, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK7 MUTATED       15      2      7      1
  PAK7 WILD-TYPE    163    181     94     19
D760V3, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            2            181
  CLUS_3            7             94
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK7 MUTATED        6      4      9
  PAK7 WILD-TYPE     81     76     91
D760V4, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            4             76
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK7 MUTATED        3      8     11
  PAK7 WILD-TYPE     86    152    127
D760V5, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            8            152
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK7 MUTATED       12      9      1
  PAK7 WILD-TYPE    170    124     71
D760V6, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            9            124
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK7 MUTATED        7      9      5      5
  PAK7 WILD-TYPE    105     87     87    181
D760V7, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            7            105
  CLUS_2            9             87
  CLUS_3            5             87
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK7 MUTATED        5      4      4      4      3      1      5
  PAK7 WILD-TYPE     55     46     45     36     60    124     94
D760V8, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            4             46
  CLUS_3            4             45
  CLUS_4            4             36
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK7 MUTATED       13      4      1      7
  PAK7 WILD-TYPE    117     74     67    189
D760V9, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAK7 MUTATED        4      3      2      7      6      0      1      0      2
  PAK7 WILD-TYPE     36     59     26     73     63     48     42     28     72
D760V10, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            7             73
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK7 MUTATED        3      1      1      3
  PAK7 WILD-TYPE     30     30     26     16
D760V11, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK7 MUTATED        6      0      2      0
  PAK7 WILD-TYPE     48     10     22     22
D760V12, multiclass
        clus
vv       PAK7 MUTATED PAK7 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(761) Variable = LUM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUM MUTATED        1      1      0      2
  LUM WILD-TYPE     45     57     64     41
D761V1, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           1            45
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LUM MUTATED        1      1      2
  LUM WILD-TYPE     50     82     75
D761V2, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           1            50
  CLUS_2           1            82
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUM MUTATED        9      2      2      1
  LUM WILD-TYPE    169    181     99     19
D761V3, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           9           169
  CLUS_2           2           181
  CLUS_3           2            99
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LUM MUTATED        4      1      3
  LUM WILD-TYPE     83     79     97
D761V4, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           4            83
  CLUS_2           1            79
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LUM MUTATED        2      7      4
  LUM WILD-TYPE     87    153    134
D761V5, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           2            87
  CLUS_2           7           153
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LUM MUTATED        4      7      2
  LUM WILD-TYPE    178    126     70
D761V6, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           4           178
  CLUS_2           7           126
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUM MUTATED        3      2      2      7
  LUM WILD-TYPE    109     94     90    179
D761V7, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           3           109
  CLUS_2           2            94
  CLUS_3           2            90
  CLUS_4           7           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LUM MUTATED        5      0      1      2      0      0      6
  LUM WILD-TYPE     55     50     48     38     63    125     93
D761V8, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           5            55
  CLUS_2           0            50
  CLUS_3           1            48
  CLUS_4           2            38
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           6            93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUM MUTATED        6      1      0      7
  LUM WILD-TYPE    124     77     68    189
D761V9, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           6           124
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LUM MUTATED        0      1      1      2      6      2      1      0      1
  LUM WILD-TYPE     40     61     27     78     63     46     42     28     73
D761V10, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           0            40
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           2            78
  CLUS_5           6            63
  CLUS_6           2            46
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUM MUTATED        1      2      0      1
  LUM WILD-TYPE     32     29     27     18
D761V11, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           1            32
  CLUS_2           2            29
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUM MUTATED        3      0      0      1
  LUM WILD-TYPE     51     10     24     21
D761V12, multiclass
        clus
vv       LUM MUTATED LUM WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           0            24
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(762) Variable = WDR66 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR66 MUTATED        4      0      0      5
  WDR66 WILD-TYPE     42     58     64     38
D762V1, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR66 MUTATED        3      3      3
  WDR66 WILD-TYPE     48     80     74
D762V2, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR66 MUTATED       16      3      1      1
  WDR66 WILD-TYPE    162    180    100     19
D762V3, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR66 MUTATED        7      3      2
  WDR66 WILD-TYPE     80     77     98
D762V4, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR66 MUTATED        3      6      8
  WDR66 WILD-TYPE     86    154    130
D762V5, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR66 MUTATED       10      5      2
  WDR66 WILD-TYPE    172    128     70
D762V6, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR66 MUTATED        4      3      6      9
  WDR66 WILD-TYPE    108     93     86    177
D762V7, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR66 MUTATED        4      1      6      0      2      3      6
  WDR66 WILD-TYPE     56     49     43     40     61    122     93
D762V8, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR66 MUTATED        6      5      1      9
  WDR66 WILD-TYPE    124     73     67    187
D762V9, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR66 MUTATED        1      5      3      3      4      1      1      0
  WDR66 WILD-TYPE     39     57     25     77     65     47     42     28
                 vv
clus              CLUS_9
  WDR66 MUTATED        3
  WDR66 WILD-TYPE     71
D762V10, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR66 MUTATED        4      1      0      1
  WDR66 WILD-TYPE     29     30     27     18
D762V11, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR66 MUTATED        3      1      1      1
  WDR66 WILD-TYPE     51      9     23     21
D762V12, multiclass
        clus
vv       WDR66 MUTATED WDR66 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(763) Variable = IRAK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRAK3 MUTATED        0      0      0      2
  IRAK3 WILD-TYPE     46     58     64     41
D763V1, multiclass
[1] "Remove cluster labels:" "IRAK3 MUTATED"         
clus
  IRAK3 MUTATED IRAK3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AY-4071 
"IRAK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IRAK3 MUTATED        1      0      1
  IRAK3 WILD-TYPE     50     83     76
D763V2, multiclass
[1] "Remove cluster labels:" "IRAK3 MUTATED"         
clus
  IRAK3 MUTATED IRAK3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AY-4071 
"IRAK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRAK3 MUTATED        7      1      0      1
  IRAK3 WILD-TYPE    171    182    101     19
D763V3, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IRAK3 MUTATED        3      1      3
  IRAK3 WILD-TYPE     84     79     97
D763V4, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IRAK3 MUTATED        1      3      4
  IRAK3 WILD-TYPE     88    157    134
D763V5, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IRAK3 MUTATED        3      3      2
  IRAK3 WILD-TYPE    179    130     70
D763V6, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRAK3 MUTATED        1      4      2      2
  IRAK3 WILD-TYPE    111     92     90    184
D763V7, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRAK3 MUTATED        2      2      3      0      1      0      1
  IRAK3 WILD-TYPE     58     48     46     40     62    125     98
D763V8, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRAK3 MUTATED        4      1      0      3
  IRAK3 WILD-TYPE    126     77     68    193
D763V9, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IRAK3 MUTATED        1      1      0      0      4      1      0      0
  IRAK3 WILD-TYPE     39     61     28     80     65     47     43     28
                 vv
clus              CLUS_9
  IRAK3 MUTATED        1
  IRAK3 WILD-TYPE     73
D763V10, multiclass
        clus
vv       IRAK3 MUTATED IRAK3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRAK3 MUTATED        0      0      0      1
  IRAK3 WILD-TYPE     33     31     27     18
D763V11, multiclass
[1] "Remove cluster labels:" "IRAK3 MUTATED"         
clus
  IRAK3 MUTATED IRAK3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-G5-6641 
"IRAK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRAK3 MUTATED        0      0      1      0
  IRAK3 WILD-TYPE     54     10     23     22
D763V12, multiclass
[1] "Remove cluster labels:" "IRAK3 MUTATED"         
clus
  IRAK3 MUTATED IRAK3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" "IRAK3 WILD-TYPE" 
     TCGA-G5-6641 
"IRAK3 WILD-TYPE" 

Clustering(764) Variable = SLC41A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC41A2 MUTATED        1      0      0      1
  SLC41A2 WILD-TYPE     45     58     64     42
D764V1, multiclass
[1] "Remove cluster labels:" "SLC41A2 MUTATED"       
clus
  SLC41A2 MUTATED SLC41A2 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AY-4071 
"SLC41A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC41A2 MUTATED        0      1      1
  SLC41A2 WILD-TYPE     51     82     76
D764V2, multiclass
[1] "Remove cluster labels:" "SLC41A2 MUTATED"       
clus
  SLC41A2 MUTATED SLC41A2 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" "SLC41A2 WILD-TYPE" 
       TCGA-AY-4071 
"SLC41A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC41A2 MUTATED        6      3      0      0
  SLC41A2 WILD-TYPE    172    180    101     20
D764V3, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC41A2 MUTATED        4      2      1
  SLC41A2 WILD-TYPE     83     78     99
D764V4, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC41A2 MUTATED        0      3      5
  SLC41A2 WILD-TYPE     89    157    133
D764V5, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC41A2 MUTATED        5      3      0
  SLC41A2 WILD-TYPE    177    130     72
D764V6, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC41A2 MUTATED        3      1      3      2
  SLC41A2 WILD-TYPE    109     95     89    184
D764V7, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               1                95
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC41A2 MUTATED        2      0      2      1      3      1      0
  SLC41A2 WILD-TYPE     58     50     47     39     60    124     99
D764V8, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC41A2 MUTATED        4      3      0      2
  SLC41A2 WILD-TYPE    126     75     68    194
D764V9, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC41A2 MUTATED        0      3      0      3      2      1      0      0
  SLC41A2 WILD-TYPE     40     59     28     77     67     47     43     28
                   vv
clus                CLUS_9
  SLC41A2 MUTATED        0
  SLC41A2 WILD-TYPE     74
D764V10, multiclass
        clus
vv       SLC41A2 MUTATED SLC41A2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               3                77
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC41A2 MUTATED        0      0      0      0
  SLC41A2 WILD-TYPE     33     31     27     19
D764V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC41A2 MUTATED        0      0      0      0
  SLC41A2 WILD-TYPE     54     10     24     22
D764V12, multiclass

Clustering(765) Variable = ING2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING2 MUTATED        0      0      0      1
  ING2 WILD-TYPE     46     58     64     42
D765V1, multiclass
[1] "Remove cluster labels:" "ING2 MUTATED"          
clus
  ING2 MUTATED ING2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING2 MUTATED        0      0      1
  ING2 WILD-TYPE     51     83     76
D765V2, multiclass
[1] "Remove cluster labels:" "ING2 MUTATED"          
clus
  ING2 MUTATED ING2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING2 MUTATED        6      0      1      0
  ING2 WILD-TYPE    172    183    100     20
D765V3, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING2 MUTATED        2      0      4
  ING2 WILD-TYPE     85     80     96
D765V4, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING2 MUTATED        0      2      4
  ING2 WILD-TYPE     89    158    134
D765V5, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ING2 MUTATED        3      2      1
  ING2 WILD-TYPE    179    131     71
D765V6, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING2 MUTATED        0      4      2      1
  ING2 WILD-TYPE    112     92     90    185
D765V7, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ING2 MUTATED        1      2      4      0      0      0      0
  ING2 WILD-TYPE     59     48     45     40     63    125     99
D765V8, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING2 MUTATED        4      1      0      2
  ING2 WILD-TYPE    126     77     68    194
D765V9, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ING2 MUTATED        0      2      1      0      2      0      1      0      1
  ING2 WILD-TYPE     40     60     27     80     67     48     42     28     73
D765V10, multiclass
        clus
vv       ING2 MUTATED ING2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING2 MUTATED        0      0      0      1
  ING2 WILD-TYPE     33     31     27     18
D765V11, multiclass
[1] "Remove cluster labels:" "ING2 MUTATED"          
clus
  ING2 MUTATED ING2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-G5-6641 
"ING2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ING2 MUTATED        1      0      0      0
  ING2 WILD-TYPE     53     10     24     22
D765V12, multiclass
[1] "Remove cluster labels:" "ING2 MUTATED"          
clus
  ING2 MUTATED ING2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" "ING2 WILD-TYPE" 
    TCGA-G5-6641 
"ING2 WILD-TYPE" 

Clustering(766) Variable = DNAJC11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC11 MUTATED        4      0      0      1
  DNAJC11 WILD-TYPE     42     58     64     42
D766V1, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC11 MUTATED        3      1      1
  DNAJC11 WILD-TYPE     48     82     76
D766V2, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC11 MUTATED        8      0      4      0
  DNAJC11 WILD-TYPE    170    183     97     20
D766V3, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC11 MUTATED        1      2      3
  DNAJC11 WILD-TYPE     86     78     97
D766V4, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC11 MUTATED        1      6      2
  DNAJC11 WILD-TYPE     88    154    136
D766V5, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC11 MUTATED        4      3      2
  DNAJC11 WILD-TYPE    178    130     70
D766V6, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC11 MUTATED        3      2      1      6
  DNAJC11 WILD-TYPE    109     94     91    180
D766V7, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJC11 MUTATED        4      0      2      0      0      1      5
  DNAJC11 WILD-TYPE     56     50     47     40     63    124     94
D766V8, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC11 MUTATED        5      0      0      7
  DNAJC11 WILD-TYPE    125     78     68    189
D766V9, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAJC11 MUTATED        1      0      0      2      6      2      0      0
  DNAJC11 WILD-TYPE     39     62     28     78     63     46     43     28
                   vv
clus                CLUS_9
  DNAJC11 MUTATED        1
  DNAJC11 WILD-TYPE     73
D766V10, multiclass
        clus
vv       DNAJC11 MUTATED DNAJC11 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               6                63
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC11 MUTATED        0      0      0      1
  DNAJC11 WILD-TYPE     33     31     27     18
D766V11, multiclass
[1] "Remove cluster labels:" "DNAJC11 MUTATED"       
clus
  DNAJC11 MUTATED DNAJC11 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-G5-6641 
"DNAJC11 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC11 MUTATED        1      0      0      0
  DNAJC11 WILD-TYPE     53     10     24     22
D766V12, multiclass
[1] "Remove cluster labels:" "DNAJC11 MUTATED"       
clus
  DNAJC11 MUTATED DNAJC11 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" "DNAJC11 WILD-TYPE" 
       TCGA-G5-6641 
"DNAJC11 WILD-TYPE" 

Clustering(767) Variable = CORO1C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CORO1C MUTATED        0      0      0      0
  CORO1C WILD-TYPE     46     58     64     43
D767V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CORO1C MUTATED        0      0      0
  CORO1C WILD-TYPE     51     83     77
D767V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CORO1C MUTATED        4      2      2      0
  CORO1C WILD-TYPE    174    181     99     20
D767V3, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CORO1C MUTATED        4      1      3
  CORO1C WILD-TYPE     83     79     97
D767V4, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CORO1C MUTATED        1      1      3
  CORO1C WILD-TYPE     88    159    135
D767V5, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CORO1C MUTATED        3      0      2
  CORO1C WILD-TYPE    179    133     70
D767V6, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              3              179
  CLUS_2              0              133
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CORO1C MUTATED        2      2      4      0
  CORO1C WILD-TYPE    110     94     88    186
D767V7, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CORO1C MUTATED        1      1      3      1      2      0      0
  CORO1C WILD-TYPE     59     49     46     39     61    125     99
D767V8, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CORO1C MUTATED        6      2      0      0
  CORO1C WILD-TYPE    124     76     68    196
D767V9, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CORO1C MUTATED        2      1      0      2      3      0      0      0
  CORO1C WILD-TYPE     38     61     28     78     66     48     43     28
                  vv
clus               CLUS_9
  CORO1C MUTATED        0
  CORO1C WILD-TYPE     74
D767V10, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CORO1C MUTATED        1      1      0      1
  CORO1C WILD-TYPE     32     30     27     18
D767V11, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CORO1C MUTATED        1      0      1      1
  CORO1C WILD-TYPE     53     10     23     21
D767V12, multiclass
        clus
vv       CORO1C MUTATED CORO1C WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(768) Variable = ATP6V1D MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1D MUTATED        0      0      0      0
  ATP6V1D WILD-TYPE     46     58     64     43
D768V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1D MUTATED        0      0      0
  ATP6V1D WILD-TYPE     51     83     77
D768V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1D MUTATED        2      3      0      1
  ATP6V1D WILD-TYPE    176    180    101     19
D768V3, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               2               176
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1D MUTATED        3      2      1
  ATP6V1D WILD-TYPE     84     78     99
D768V4, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               3                84
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1D MUTATED        1      1      4
  ATP6V1D WILD-TYPE     88    159    134
D768V5, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1D MUTATED        4      1      1
  ATP6V1D WILD-TYPE    178    132     71
D768V6, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1D MUTATED        3      3      0      0
  ATP6V1D WILD-TYPE    109     93     92    186
D768V7, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP6V1D MUTATED        1      1      1      2      1      0      0
  ATP6V1D WILD-TYPE     59     49     48     38     62    125     99
D768V8, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1D MUTATED        6      0      0      0
  ATP6V1D WILD-TYPE    124     78     68    196
D768V9, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               6               124
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP6V1D MUTATED        1      1      0      2      0      1      1      0
  ATP6V1D WILD-TYPE     39     61     28     78     69     47     42     28
                   vv
clus                CLUS_9
  ATP6V1D MUTATED        0
  ATP6V1D WILD-TYPE     74
D768V10, multiclass
        clus
vv       ATP6V1D MUTATED ATP6V1D WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               0                69
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1D MUTATED        0      1      0      0
  ATP6V1D WILD-TYPE     33     30     27     19
D768V11, multiclass
[1] "Remove cluster labels:" "ATP6V1D MUTATED"       
clus
  ATP6V1D MUTATED ATP6V1D WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6601 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-G5-6641 
"ATP6V1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1D MUTATED        1      0      0      0
  ATP6V1D WILD-TYPE     53     10     24     22
D768V12, multiclass
[1] "Remove cluster labels:" "ATP6V1D MUTATED"       
clus
  ATP6V1D MUTATED ATP6V1D WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6601 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" "ATP6V1D WILD-TYPE" 
       TCGA-G5-6641 
"ATP6V1D WILD-TYPE" 

Clustering(769) Variable = WNK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK3 MUTATED        2      2      2      6
  WNK3 WILD-TYPE     44     56     62     37
D769V1, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            2             56
  CLUS_3            2             62
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK3 MUTATED        4      3      5
  WNK3 WILD-TYPE     47     80     72
D769V2, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            3             80
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK3 MUTATED       19      7      6      0
  WNK3 WILD-TYPE    159    176     95     20
D769V3, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1           19            159
  CLUS_2            7            176
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK3 MUTATED       12      4      4
  WNK3 WILD-TYPE     75     76     96
D769V4, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1           12             75
  CLUS_2            4             76
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK3 MUTATED        3     10     10
  WNK3 WILD-TYPE     86    150    128
D769V5, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           10            150
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK3 MUTATED       11      8      4
  WNK3 WILD-TYPE    171    125     68
D769V6, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            8            125
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK3 MUTATED        5      7      9     10
  WNK3 WILD-TYPE    107     89     83    176
D769V7, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            7             89
  CLUS_3            9             83
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WNK3 MUTATED        2      3      8      2      6      5      5
  WNK3 WILD-TYPE     58     47     41     38     57    120     94
D769V8, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            8             41
  CLUS_4            2             38
  CLUS_5            6             57
  CLUS_6            5            120
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK3 MUTATED        9     10      1     11
  WNK3 WILD-TYPE    121     68     67    185
D769V9, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            9            121
  CLUS_2           10             68
  CLUS_3            1             67
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WNK3 MUTATED        2     10      2      7      7      1      0      0      2
  WNK3 WILD-TYPE     38     52     26     73     62     47     43     28     72
D769V10, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2           10             52
  CLUS_3            2             26
  CLUS_4            7             73
  CLUS_5            7             62
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK3 MUTATED        1      3      0      3
  WNK3 WILD-TYPE     32     28     27     16
D769V11, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             28
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK3 MUTATED        4      0      2      1
  WNK3 WILD-TYPE     50     10     22     21
D769V12, multiclass
        clus
vv       WNK3 MUTATED WNK3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(770) Variable = C1ORF168 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF168 MUTATED        2      0      0      3
  C1ORF168 WILD-TYPE     44     58     64     40
D770V1, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF168 MUTATED        3      1      1
  C1ORF168 WILD-TYPE     48     82     76
D770V2, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF168 MUTATED       11      1      4      0
  C1ORF168 WILD-TYPE    167    182     97     20
D770V3, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1               11                167
  CLUS_2                1                182
  CLUS_3                4                 97
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF168 MUTATED        4      2      5
  C1ORF168 WILD-TYPE     83     78     95
D770V4, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                2                 78
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF168 MUTATED        1      6      6
  C1ORF168 WILD-TYPE     88    154    132
D770V5, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                6                154
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF168 MUTATED        7      4      2
  C1ORF168 WILD-TYPE    175    129     70
D770V6, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                7                175
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF168 MUTATED        1      5      5      5
  C1ORF168 WILD-TYPE    111     91     87    181
D770V7, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                5                 91
  CLUS_3                5                 87
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF168 MUTATED        2      2      3      2      2      0      5
  C1ORF168 WILD-TYPE     58     48     46     38     61    125     94
D770V8, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                2                 48
  CLUS_3                3                 46
  CLUS_4                2                 38
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF168 MUTATED        6      2      2      5
  C1ORF168 WILD-TYPE    124     76     66    191
D770V9, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                2                 76
  CLUS_3                2                 66
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1ORF168 MUTATED        1      3      4      1      5      0      1      0
  C1ORF168 WILD-TYPE     39     59     24     79     64     48     42     28
                    vv
clus                 CLUS_9
  C1ORF168 MUTATED        0
  C1ORF168 WILD-TYPE     74
D770V10, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                4                 24
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF168 MUTATED        0      0      1      3
  C1ORF168 WILD-TYPE     33     31     26     16
D770V11, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 31
  CLUS_3                1                 26
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF168 MUTATED        3      0      1      0
  C1ORF168 WILD-TYPE     51     10     23     22
D770V12, multiclass
        clus
vv       C1ORF168 MUTATED C1ORF168 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(771) Variable = VANGL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VANGL1 MUTATED        1      0      0      1
  VANGL1 WILD-TYPE     45     58     64     42
D771V1, multiclass
[1] "Remove cluster labels:" "VANGL1 MUTATED"        
clus
  VANGL1 MUTATED VANGL1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00K 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AY-4071 
"VANGL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VANGL1 MUTATED        2      0      0
  VANGL1 WILD-TYPE     49     83     77
D771V2, multiclass
[1] "Remove cluster labels:" "VANGL1 MUTATED"        
clus
  VANGL1 MUTATED VANGL1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00K 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" "VANGL1 WILD-TYPE" 
      TCGA-AY-4071 
"VANGL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VANGL1 MUTATED        6      4      2      1
  VANGL1 WILD-TYPE    172    179     99     19
D771V3, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VANGL1 MUTATED        4      2      4
  VANGL1 WILD-TYPE     83     78     96
D771V4, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VANGL1 MUTATED        3      4      5
  VANGL1 WILD-TYPE     86    156    133
D771V5, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VANGL1 MUTATED        6      4      2
  VANGL1 WILD-TYPE    176    129     70
D771V6, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VANGL1 MUTATED        3      4      3      3
  VANGL1 WILD-TYPE    109     92     89    183
D771V7, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VANGL1 MUTATED        2      2      2      2      1      1      3
  VANGL1 WILD-TYPE     58     48     47     38     62    124     96
D771V8, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VANGL1 MUTATED        6      2      0      5
  VANGL1 WILD-TYPE    124     76     68    191
D771V9, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VANGL1 MUTATED        1      2      1      4      4      0      1      0
  VANGL1 WILD-TYPE     39     60     27     76     65     48     42     28
                  vv
clus               CLUS_9
  VANGL1 MUTATED        0
  VANGL1 WILD-TYPE     74
D771V10, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VANGL1 MUTATED        0      3      0      1
  VANGL1 WILD-TYPE     33     28     27     18
D771V11, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              3               28
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VANGL1 MUTATED        3      0      0      1
  VANGL1 WILD-TYPE     51     10     24     21
D771V12, multiclass
        clus
vv       VANGL1 MUTATED VANGL1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(772) Variable = SPANXC MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        1      0      0      0
  SPANXC WILD-TYPE     45     58     64     43
D772V1, multiclass
[1] "Remove cluster labels:" "SPANXC MUTATED"        
clus
  SPANXC MUTATED SPANXC WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPANXC MUTATED        1      0      0
  SPANXC WILD-TYPE     50     83     77
D772V2, multiclass
[1] "Remove cluster labels:" "SPANXC MUTATED"        
clus
  SPANXC MUTATED SPANXC WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        3      0      1      0
  SPANXC WILD-TYPE    175    183    100     20
D772V3, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPANXC MUTATED        0      0      3
  SPANXC WILD-TYPE     87     80     97
D772V4, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0               87
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPANXC MUTATED        1      0      2
  SPANXC WILD-TYPE     88    160    136
D772V5, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPANXC MUTATED        3      0      0
  SPANXC WILD-TYPE    179    133     72
D772V6, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              3              179
  CLUS_2              0              133
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        0      3      1      0
  SPANXC WILD-TYPE    112     93     91    186
D772V7, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPANXC MUTATED        0      0      3      0      0      0      1
  SPANXC WILD-TYPE     60     50     46     40     63    125     98
D772V8, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        2      0      0      2
  SPANXC WILD-TYPE    128     78     68    194
D772V9, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPANXC MUTATED        0      0      0      0      3      0      0      1
  SPANXC WILD-TYPE     40     62     28     80     66     48     43     27
                  vv
clus               CLUS_9
  SPANXC MUTATED        0
  SPANXC WILD-TYPE     74
D772V10, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        0      0      0      1
  SPANXC WILD-TYPE     33     31     27     18
D772V11, multiclass
[1] "Remove cluster labels:" "SPANXC MUTATED"        
clus
  SPANXC MUTATED SPANXC WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-G5-6641 
"SPANXC WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        0      0      1      0
  SPANXC WILD-TYPE     54     10     23     22
D772V12, multiclass
[1] "Remove cluster labels:" "SPANXC MUTATED"        
clus
  SPANXC MUTATED SPANXC WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" "SPANXC WILD-TYPE" 
      TCGA-G5-6641 
"SPANXC WILD-TYPE" 

Clustering(773) Variable = KLKB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLKB1 MUTATED        2      0      0      4
  KLKB1 WILD-TYPE     44     58     64     39
D773V1, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLKB1 MUTATED        5      0      1
  KLKB1 WILD-TYPE     46     83     76
D773V2, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLKB1 MUTATED       13      1      1      0
  KLKB1 WILD-TYPE    165    182    100     20
D773V3, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLKB1 MUTATED        3      1      5
  KLKB1 WILD-TYPE     84     79     95
D773V4, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLKB1 MUTATED        1      5      9
  KLKB1 WILD-TYPE     88    155    129
D773V5, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLKB1 MUTATED       10      5      0
  KLKB1 WILD-TYPE    172    128     72
D773V6, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLKB1 MUTATED        2      6      2      5
  KLKB1 WILD-TYPE    110     90     90    181
D773V7, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLKB1 MUTATED        2      0      7      0      1      0      5
  KLKB1 WILD-TYPE     58     50     42     40     62    125     94
D773V8, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLKB1 MUTATED        6      0      1      7
  KLKB1 WILD-TYPE    124     78     67    189
D773V9, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLKB1 MUTATED        1      2      0      0      9      1      1      0
  KLKB1 WILD-TYPE     39     60     28     80     60     47     42     28
                 vv
clus              CLUS_9
  KLKB1 MUTATED        0
  KLKB1 WILD-TYPE     74
D773V10, multiclass
        clus
vv       KLKB1 MUTATED KLKB1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             9              60
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLKB1 MUTATED        0      0      1      1
  KLKB1 WILD-TYPE     33     31     26     18
D773V11, multiclass
[1] "Remove cluster labels:" "KLKB1 MUTATED"         
clus
  KLKB1 MUTATED KLKB1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6683 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLKB1 MUTATED        1      0      0      1
  KLKB1 WILD-TYPE     53     10     24     21
D773V12, multiclass
[1] "Remove cluster labels:" "KLKB1 MUTATED"         
clus
  KLKB1 MUTATED KLKB1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6683 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" "KLKB1 WILD-TYPE" 

Clustering(774) Variable = SV2A MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        2      0      2      2
  SV2A WILD-TYPE     44     58     62     41
D774V1, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SV2A MUTATED        3      2      1
  SV2A WILD-TYPE     48     81     76
D774V2, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED       15      3      4      1
  SV2A WILD-TYPE    163    180     97     19
D774V3, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1           15            163
  CLUS_2            3            180
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SV2A MUTATED       11      2      4
  SV2A WILD-TYPE     76     78     96
D774V4, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1           11             76
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SV2A MUTATED        3      5     13
  SV2A WILD-TYPE     86    155    125
D774V5, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            155
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SV2A MUTATED       11      7      3
  SV2A WILD-TYPE    171    126     69
D774V6, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1           11            171
  CLUS_2            7            126
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        3      7      6      7
  SV2A WILD-TYPE    109     89     86    179
D774V7, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3            109
  CLUS_2            7             89
  CLUS_3            6             86
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SV2A MUTATED        2      1      7      4      2      2      5
  SV2A WILD-TYPE     58     49     42     36     61    123     94
D774V8, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            4             36
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        8      5      2      8
  SV2A WILD-TYPE    122     73     66    188
D774V9, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            8            122
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SV2A MUTATED        3      5      2      0      5      1      3      2      2
  SV2A WILD-TYPE     37     57     26     80     64     47     40     26     72
D774V10, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            3             37
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            2             26
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        1      1      1      1
  SV2A WILD-TYPE     32     30     26     18
D774V11, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SV2A MUTATED        2      0      2      0
  SV2A WILD-TYPE     52     10     22     22
D774V12, multiclass
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(775) Variable = POLA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLA1 MUTATED        2      2      1      2
  POLA1 WILD-TYPE     44     56     63     41
D775V1, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLA1 MUTATED        1      4      2
  POLA1 WILD-TYPE     50     79     75
D775V2, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             4              79
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLA1 MUTATED        8      4      1      1
  POLA1 WILD-TYPE    170    179    100     19
D775V3, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLA1 MUTATED        1      3      2
  POLA1 WILD-TYPE     86     77     98
D775V4, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLA1 MUTATED        1      7      4
  POLA1 WILD-TYPE     88    153    134
D775V5, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLA1 MUTATED        3      6      3
  POLA1 WILD-TYPE    179    127     69
D775V6, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLA1 MUTATED        4      1      2      7
  POLA1 WILD-TYPE    108     95     90    179
D775V7, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POLA1 MUTATED        4      1      2      0      0      4      3
  POLA1 WILD-TYPE     56     49     47     40     63    121     96
D775V8, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             4             121
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLA1 MUTATED        5      0      1      8
  POLA1 WILD-TYPE    125     78     67    188
D775V9, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  POLA1 MUTATED        1      0      2      2      3      1      2      0
  POLA1 WILD-TYPE     39     62     26     78     66     47     41     28
                 vv
clus              CLUS_9
  POLA1 MUTATED        3
  POLA1 WILD-TYPE     71
D775V10, multiclass
        clus
vv       POLA1 MUTATED POLA1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLA1 MUTATED        0      0      1      0
  POLA1 WILD-TYPE     33     31     26     19
D775V11, multiclass
[1] "Remove cluster labels:" "POLA1 MUTATED"         
clus
  POLA1 MUTATED POLA1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-G5-6641 
"POLA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLA1 MUTATED        0      0      0      1
  POLA1 WILD-TYPE     54     10     24     21
D775V12, multiclass
[1] "Remove cluster labels:" "POLA1 MUTATED"         
clus
  POLA1 MUTATED POLA1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" "POLA1 WILD-TYPE" 
     TCGA-G5-6641 
"POLA1 WILD-TYPE" 

Clustering(776) Variable = RAB40C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40C MUTATED        1      0      0      0
  RAB40C WILD-TYPE     45     58     64     43
D776V1, multiclass
[1] "Remove cluster labels:" "RAB40C MUTATED"        
clus
  RAB40C MUTATED RAB40C WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB40C MUTATED        1      0      0
  RAB40C WILD-TYPE     50     83     77
D776V2, multiclass
[1] "Remove cluster labels:" "RAB40C MUTATED"        
clus
  RAB40C MUTATED RAB40C WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40C MUTATED        7      0      0      0
  RAB40C WILD-TYPE    171    183    101     20
D776V3, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              7              171
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB40C MUTATED        3      0      4
  RAB40C WILD-TYPE     84     80     96
D776V4, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB40C MUTATED        1      3      4
  RAB40C WILD-TYPE     88    157    134
D776V5, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB40C MUTATED        4      3      1
  RAB40C WILD-TYPE    178    130     71
D776V6, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40C MUTATED        0      4      3      1
  RAB40C WILD-TYPE    112     92     89    185
D776V7, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB40C MUTATED        0      0      6      0      0      0      2
  RAB40C WILD-TYPE     60     50     43     40     63    125     97
D776V8, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40C MUTATED        3      1      0      4
  RAB40C WILD-TYPE    127     77     68    192
D776V9, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB40C MUTATED        0      3      0      0      5      0      0      0
  RAB40C WILD-TYPE     40     59     28     80     64     48     43     28
                  vv
clus               CLUS_9
  RAB40C MUTATED        0
  RAB40C WILD-TYPE     74
D776V10, multiclass
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40C MUTATED        1      0      0      1
  RAB40C WILD-TYPE     32     31     27     18
D776V11, multiclass
[1] "Remove cluster labels:" "RAB40C MUTATED"        
clus
  RAB40C MUTATED RAB40C WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40C MUTATED        1      0      1      0
  RAB40C WILD-TYPE     53     10     23     22
D776V12, multiclass
[1] "Remove cluster labels:" "RAB40C MUTATED"        
clus
  RAB40C MUTATED RAB40C WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 

Clustering(777) Variable = DHX35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        1      0      0      3
  DHX35 WILD-TYPE     45     58     64     40
D777V1, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        1      2      1
  DHX35 WILD-TYPE     50     81     76
D777V2, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        8      2      1      1
  DHX35 WILD-TYPE    170    181    100     19
D777V3, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        2      2      4
  DHX35 WILD-TYPE     85     78     96
D777V4, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        1      4      5
  DHX35 WILD-TYPE     88    156    133
D777V5, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX35 MUTATED        4      6      0
  DHX35 WILD-TYPE    178    127     72
D777V6, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        3      5      1      4
  DHX35 WILD-TYPE    109     91     91    182
D777V7, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX35 MUTATED        2      2      3      2      1      1      2
  DHX35 WILD-TYPE     58     48     46     38     62    124     97
D777V8, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        7      0      0      6
  DHX35 WILD-TYPE    123     78     68    190
D777V9, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DHX35 MUTATED        1      0      2      3      4      1      1      0
  DHX35 WILD-TYPE     39     62     26     77     65     47     42     28
                 vv
clus              CLUS_9
  DHX35 MUTATED        1
  DHX35 WILD-TYPE     73
D777V10, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        1      1      0      1
  DHX35 WILD-TYPE     32     30     27     18
D777V11, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX35 MUTATED        2      0      1      0
  DHX35 WILD-TYPE     52     10     23     22
D777V12, multiclass
        clus
vv       DHX35 MUTATED DHX35 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(778) Variable = SLC25A13 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A13 MUTATED        1      0      3      3
  SLC25A13 WILD-TYPE     45     58     61     40
D778V1, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                3                 61
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A13 MUTATED        1      4      2
  SLC25A13 WILD-TYPE     50     79     75
D778V2, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                4                 79
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A13 MUTATED        9      3      5      0
  SLC25A13 WILD-TYPE    169    180     96     20
D778V3, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                3                180
  CLUS_3                5                 96
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A13 MUTATED        2      3      6
  SLC25A13 WILD-TYPE     85     77     94
D778V4, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                3                 77
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A13 MUTATED        3      8      5
  SLC25A13 WILD-TYPE     86    152    133
D778V5, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                8                152
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A13 MUTATED        6      7      3
  SLC25A13 WILD-TYPE    176    126     69
D778V6, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                7                126
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A13 MUTATED        2      6      4      5
  SLC25A13 WILD-TYPE    110     90     88    181
D778V7, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                6                 90
  CLUS_3                4                 88
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A13 MUTATED        2      3      3      0      3      4      2
  SLC25A13 WILD-TYPE     58     47     46     40     60    121     97
D778V8, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                3                 47
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                3                 60
  CLUS_6                4                121
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A13 MUTATED        7      1      1      7
  SLC25A13 WILD-TYPE    123     77     67    189
D778V9, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC25A13 MUTATED        2      1      4      0      3      0      1      2
  SLC25A13 WILD-TYPE     38     61     24     80     66     48     42     26
                    vv
clus                 CLUS_9
  SLC25A13 MUTATED        3
  SLC25A13 WILD-TYPE     71
D778V10, multiclass
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                1                 61
  CLUS_3                4                 24
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                2                 26
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A13 MUTATED        0      1      0      1
  SLC25A13 WILD-TYPE     33     30     27     18
D778V11, multiclass
[1] "Remove cluster labels:" "SLC25A13 MUTATED"      
clus
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CI-6619         TCGA-CI-6620 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A13 MUTATED        0      1      1      0
  SLC25A13 WILD-TYPE     54      9     23     22
D778V12, multiclass
[1] "Remove cluster labels:" "SLC25A13 MUTATED"      
clus
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CI-6619         TCGA-CI-6620 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 

Clustering(779) Variable = FAM26E MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        1      0      0      0
  FAM26E WILD-TYPE     45     58     64     43
D779V1, multiclass
[1] "Remove cluster labels:" "FAM26E MUTATED"        
clus
  FAM26E MUTATED FAM26E WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM26E MUTATED        1      0      0
  FAM26E WILD-TYPE     50     83     77
D779V2, multiclass
[1] "Remove cluster labels:" "FAM26E MUTATED"        
clus
  FAM26E MUTATED FAM26E WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        5      0      0      0
  FAM26E WILD-TYPE    173    183    101     20
D779V3, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              5              173
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM26E MUTATED        1      0      3
  FAM26E WILD-TYPE     86     80     97
D779V4, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM26E MUTATED        0      1      3
  FAM26E WILD-TYPE     89    159    135
D779V5, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM26E MUTATED        3      1      0
  FAM26E WILD-TYPE    179    132     72
D779V6, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        0      3      1      1
  FAM26E WILD-TYPE    112     93     91    185
D779V7, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM26E MUTATED        0      0      4      0      0      0      1
  FAM26E WILD-TYPE     60     50     45     40     63    125     98
D779V8, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        4      0      0      1
  FAM26E WILD-TYPE    126     78     68    195
D779V9, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM26E MUTATED        0      1      0      0      4      0      0      0
  FAM26E WILD-TYPE     40     61     28     80     65     48     43     28
                  vv
clus               CLUS_9
  FAM26E MUTATED        0
  FAM26E WILD-TYPE     74
D779V10, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        0      0      0      1
  FAM26E WILD-TYPE     33     31     27     18
D779V11, multiclass
[1] "Remove cluster labels:" "FAM26E MUTATED"        
clus
  FAM26E MUTATED FAM26E WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-G5-6641 
"FAM26E WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        0      0      1      0
  FAM26E WILD-TYPE     54     10     23     22
D779V12, multiclass
[1] "Remove cluster labels:" "FAM26E MUTATED"        
clus
  FAM26E MUTATED FAM26E WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" "FAM26E WILD-TYPE" 
      TCGA-G5-6641 
"FAM26E WILD-TYPE" 

Clustering(780) Variable = SAFB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        3      1      0      0
  SAFB WILD-TYPE     43     57     64     43
D780V1, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        2      2      0
  SAFB WILD-TYPE     49     81     77
D780V2, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED       13      3      0      0
  SAFB WILD-TYPE    165    180    101     20
D780V3, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1           13            165
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        4      2      6
  SAFB WILD-TYPE     83     78     94
D780V4, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        0      6      8
  SAFB WILD-TYPE     89    154    130
D780V5, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        9      2      3
  SAFB WILD-TYPE    173    131     69
D780V6, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            9            173
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        3      6      4      3
  SAFB WILD-TYPE    109     90     88    183
D780V7, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAFB MUTATED        2      2      6      0      2      2      2
  SAFB WILD-TYPE     58     48     43     40     61    123     97
D780V8, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        7      5      1      3
  SAFB WILD-TYPE    123     73     67    193
D780V9, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            7            123
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SAFB MUTATED        1      4      1      1      4      1      2      2      0
  SAFB WILD-TYPE     39     58     27     79     65     47     41     26     74
D780V10, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            2             26
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        1      0      0      0
  SAFB WILD-TYPE     32     31     27     19
D780V11, multiclass
[1] "Remove cluster labels:" "SAFB MUTATED"          
clus
  SAFB MUTATED SAFB WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-G5-6641 
"SAFB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        1      0      0      0
  SAFB WILD-TYPE     53     10     24     22
D780V12, multiclass
[1] "Remove cluster labels:" "SAFB MUTATED"          
clus
  SAFB MUTATED SAFB WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" "SAFB WILD-TYPE" 
    TCGA-G5-6641 
"SAFB WILD-TYPE" 

Clustering(781) Variable = YES1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YES1 MUTATED        0      0      1      0
  YES1 WILD-TYPE     46     58     63     43
D781V1, multiclass
[1] "Remove cluster labels:" "YES1 MUTATED"          
clus
  YES1 MUTATED YES1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YES1 MUTATED        0      0      1
  YES1 WILD-TYPE     51     83     76
D781V2, multiclass
[1] "Remove cluster labels:" "YES1 MUTATED"          
clus
  YES1 MUTATED YES1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" "YES1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"YES1 WILD-TYPE" "YES1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YES1 MUTATED        6      4      0      0
  YES1 WILD-TYPE    172    179    101     20
D781V3, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YES1 MUTATED        5      1      3
  YES1 WILD-TYPE     82     79     97
D781V4, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YES1 MUTATED        2      1      5
  YES1 WILD-TYPE     87    159    133
D781V5, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YES1 MUTATED        7      1      0
  YES1 WILD-TYPE    175    132     72
D781V6, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YES1 MUTATED        1      3      5      1
  YES1 WILD-TYPE    111     93     87    185
D781V7, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            5             87
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YES1 MUTATED        1      1      5      0      2      1      0
  YES1 WILD-TYPE     59     49     44     40     61    124     99
D781V8, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YES1 MUTATED        4      4      1      1
  YES1 WILD-TYPE    126     74     67    195
D781V9, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  YES1 MUTATED        1      5      0      1      2      1      0      0      0
  YES1 WILD-TYPE     39     57     28     79     67     47     43     28     74
D781V10, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            5             57
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YES1 MUTATED        0      1      1      2
  YES1 WILD-TYPE     33     30     26     17
D781V11, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YES1 MUTATED        3      1      0      0
  YES1 WILD-TYPE     51      9     24     22
D781V12, multiclass
        clus
vv       YES1 MUTATED YES1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(782) Variable = ACTL8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL8 MUTATED        3      0      0      0
  ACTL8 WILD-TYPE     43     58     64     43
D782V1, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTL8 MUTATED        2      1      0
  ACTL8 WILD-TYPE     49     82     77
D782V2, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL8 MUTATED        5      1      2      1
  ACTL8 WILD-TYPE    173    182     99     19
D782V3, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTL8 MUTATED        2      1      3
  ACTL8 WILD-TYPE     85     79     97
D782V4, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTL8 MUTATED        3      1      1
  ACTL8 WILD-TYPE     86    159    137
D782V5, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1             159
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTL8 MUTATED        3      0      2
  ACTL8 WILD-TYPE    179    133     70
D782V6, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL8 MUTATED        2      4      1      2
  ACTL8 WILD-TYPE    110     92     91    184
D782V7, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTL8 MUTATED        0      2      1      2      1      1      2
  ACTL8 WILD-TYPE     60     48     48     38     62    124     97
D782V8, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL8 MUTATED        5      0      1      3
  ACTL8 WILD-TYPE    125     78     67    193
D782V9, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACTL8 MUTATED        2      0      0      2      1      0      3      1
  ACTL8 WILD-TYPE     38     62     28     78     68     48     40     27
                 vv
clus              CLUS_9
  ACTL8 MUTATED        0
  ACTL8 WILD-TYPE     74
D782V10, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL8 MUTATED        2      1      0      0
  ACTL8 WILD-TYPE     31     30     27     19
D782V11, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL8 MUTATED        2      0      0      1
  ACTL8 WILD-TYPE     52     10     24     21
D782V12, multiclass
        clus
vv       ACTL8 MUTATED ACTL8 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(783) Variable = CNTFR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTFR MUTATED        1      0      1      0
  CNTFR WILD-TYPE     45     58     63     43
D783V1, multiclass
[1] "Remove cluster labels:" "CNTFR MUTATED"         
clus
  CNTFR MUTATED CNTFR WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3679 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AY-4071 
"CNTFR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNTFR MUTATED        0      1      1
  CNTFR WILD-TYPE     51     82     76
D783V2, multiclass
[1] "Remove cluster labels:" "CNTFR MUTATED"         
clus
  CNTFR MUTATED CNTFR WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3679 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" "CNTFR WILD-TYPE" 
     TCGA-AY-4071 
"CNTFR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTFR MUTATED        6      2      1      1
  CNTFR WILD-TYPE    172    181    100     19
D783V3, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNTFR MUTATED        2      3      3
  CNTFR WILD-TYPE     85     77     97
D783V4, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNTFR MUTATED        0      2      6
  CNTFR WILD-TYPE     89    158    132
D783V5, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNTFR MUTATED        5      3      0
  CNTFR WILD-TYPE    177    130     72
D783V6, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTFR MUTATED        3      3      2      2
  CNTFR WILD-TYPE    109     93     90    184
D783V7, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNTFR MUTATED        3      1      3      0      1      1      1
  CNTFR WILD-TYPE     57     49     46     40     62    124     98
D783V8, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTFR MUTATED        5      2      0      3
  CNTFR WILD-TYPE    125     76     68    193
D783V9, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNTFR MUTATED        0      2      1      3      1      1      1      0
  CNTFR WILD-TYPE     40     60     27     77     68     47     42     28
                 vv
clus              CLUS_9
  CNTFR MUTATED        1
  CNTFR WILD-TYPE     73
D783V10, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTFR MUTATED        1      0      0      2
  CNTFR WILD-TYPE     32     31     27     17
D783V11, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTFR MUTATED        1      0      2      0
  CNTFR WILD-TYPE     53     10     22     22
D783V12, multiclass
        clus
vv       CNTFR MUTATED CNTFR WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(784) Variable = OR4E2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4E2 MUTATED        0      0      0      0
  OR4E2 WILD-TYPE     46     58     64     43
D784V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4E2 MUTATED        0      0      0
  OR4E2 WILD-TYPE     51     83     77
D784V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4E2 MUTATED        5      0      0      0
  OR4E2 WILD-TYPE    173    183    101     20
D784V3, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4E2 MUTATED        1      0      4
  OR4E2 WILD-TYPE     86     80     96
D784V4, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4E2 MUTATED        0      4      1
  OR4E2 WILD-TYPE     89    156    137
D784V5, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4E2 MUTATED        1      4      0
  OR4E2 WILD-TYPE    181    129     72
D784V6, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4E2 MUTATED        0      3      1      1
  OR4E2 WILD-TYPE    112     93     91    185
D784V7, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4E2 MUTATED        0      0      4      0      0      0      1
  OR4E2 WILD-TYPE     60     50     45     40     63    125     98
D784V8, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4E2 MUTATED        3      0      0      2
  OR4E2 WILD-TYPE    127     78     68    194
D784V9, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4E2 MUTATED        1      0      0      0      1      0      2      0
  OR4E2 WILD-TYPE     39     62     28     80     68     48     41     28
                 vv
clus              CLUS_9
  OR4E2 MUTATED        1
  OR4E2 WILD-TYPE     73
D784V10, multiclass
        clus
vv       OR4E2 MUTATED OR4E2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4E2 MUTATED        0      0      0      0
  OR4E2 WILD-TYPE     33     31     27     19
D784V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4E2 MUTATED        0      0      0      0
  OR4E2 WILD-TYPE     54     10     24     22
D784V12, multiclass

Clustering(785) Variable = PPP1R12A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12A MUTATED        1      1      0      1
  PPP1R12A WILD-TYPE     45     57     64     42
D785V1, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12A MUTATED        2      1      0
  PPP1R12A WILD-TYPE     49     82     77
D785V2, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12A MUTATED        7      7      1      1
  PPP1R12A WILD-TYPE    171    176    100     19
D785V3, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                7                171
  CLUS_2                7                176
  CLUS_3                1                100
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12A MUTATED        4      5      4
  PPP1R12A WILD-TYPE     83     75     96
D785V4, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                5                 75
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12A MUTATED        4      4      7
  PPP1R12A WILD-TYPE     85    156    131
D785V5, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                4                 85
  CLUS_2                4                156
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12A MUTATED        9      4      2
  PPP1R12A WILD-TYPE    173    129     70
D785V6, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                9                173
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12A MUTATED        4      4      4      4
  PPP1R12A WILD-TYPE    108     92     88    182
D785V7, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                4                108
  CLUS_2                4                 92
  CLUS_3                4                 88
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP1R12A MUTATED        5      2      4      1      0      2      2
  PPP1R12A WILD-TYPE     55     48     45     39     63    123     97
D785V8, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                5                 55
  CLUS_2                2                 48
  CLUS_3                4                 45
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12A MUTATED        6      3      2      5
  PPP1R12A WILD-TYPE    124     75     66    191
D785V9, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                6                124
  CLUS_2                3                 75
  CLUS_3                2                 66
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPP1R12A MUTATED        2      2      2      2      4      0      2      1
  PPP1R12A WILD-TYPE     38     60     26     78     65     48     41     27
                    vv
clus                 CLUS_9
  PPP1R12A MUTATED        1
  PPP1R12A WILD-TYPE     73
D785V10, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                2                 78
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                1                 27
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12A MUTATED        2      0      1      3
  PPP1R12A WILD-TYPE     31     31     26     16
D785V11, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                1                 26
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12A MUTATED        2      0      4      0
  PPP1R12A WILD-TYPE     52     10     20     22
D785V12, multiclass
        clus
vv       PPP1R12A MUTATED PPP1R12A WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                4                 20
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(786) Variable = ZNF721 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF721 MUTATED        4      0      0      4
  ZNF721 WILD-TYPE     42     58     64     39
D786V1, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF721 MUTATED        4      2      2
  ZNF721 WILD-TYPE     47     81     75
D786V2, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF721 MUTATED       15      0      1      0
  ZNF721 WILD-TYPE    163    183    100     20
D786V3, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF721 MUTATED        6      1      1
  ZNF721 WILD-TYPE     81     79     99
D786V4, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF721 MUTATED        1      3     10
  ZNF721 WILD-TYPE     88    157    128
D786V5, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF721 MUTATED        8      4      2
  ZNF721 WILD-TYPE    174    129     70
D786V6, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF721 MUTATED        1      4      3      9
  ZNF721 WILD-TYPE    111     92     89    177
D786V7, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF721 MUTATED        2      2      3      0      1      1      8
  ZNF721 WILD-TYPE     58     48     46     40     62    124     91
D786V8, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF721 MUTATED        2      3      0     11
  ZNF721 WILD-TYPE    128     75     68    185
D786V9, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF721 MUTATED        1      3      2      2      6      0      0      0
  ZNF721 WILD-TYPE     39     59     26     78     63     48     43     28
                  vv
clus               CLUS_9
  ZNF721 MUTATED        2
  ZNF721 WILD-TYPE     72
D786V10, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF721 MUTATED        1      0      0      2
  ZNF721 WILD-TYPE     32     31     27     17
D786V11, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF721 MUTATED        2      0      1      0
  ZNF721 WILD-TYPE     52     10     23     22
D786V12, multiclass
        clus
vv       ZNF721 MUTATED ZNF721 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(787) Variable = KIFAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        2      0      0      0
  KIFAP3 WILD-TYPE     44     58     64     43
D787V1, multiclass
[1] "Remove cluster labels:" "KIFAP3 MUTATED"        
clus
  KIFAP3 MUTATED KIFAP3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00D 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AY-4071 
"KIFAP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIFAP3 MUTATED        2      0      0
  KIFAP3 WILD-TYPE     49     83     77
D787V2, multiclass
[1] "Remove cluster labels:" "KIFAP3 MUTATED"        
clus
  KIFAP3 MUTATED KIFAP3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00D 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" "KIFAP3 WILD-TYPE" 
      TCGA-AY-4071 
"KIFAP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        8      0      0      0
  KIFAP3 WILD-TYPE    170    183    101     20
D787V3, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIFAP3 MUTATED        2      0      4
  KIFAP3 WILD-TYPE     85     80     96
D787V4, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIFAP3 MUTATED        2      1      5
  KIFAP3 WILD-TYPE     87    159    133
D787V5, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIFAP3 MUTATED        5      2      1
  KIFAP3 WILD-TYPE    177    131     71
D787V6, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        0      3      3      3
  KIFAP3 WILD-TYPE    112     93     89    183
D787V7, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIFAP3 MUTATED        0      0      3      1      1      0      4
  KIFAP3 WILD-TYPE     60     50     46     39     62    125     95
D787V8, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        4      1      0      3
  KIFAP3 WILD-TYPE    126     77     68    193
D787V9, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIFAP3 MUTATED        1      2      0      0      5      0      0      0
  KIFAP3 WILD-TYPE     39     60     28     80     64     48     43     28
                  vv
clus               CLUS_9
  KIFAP3 MUTATED        0
  KIFAP3 WILD-TYPE     74
D787V10, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        0      0      0      0
  KIFAP3 WILD-TYPE     33     31     27     19
D787V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        0      0      0      0
  KIFAP3 WILD-TYPE     54     10     24     22
D787V12, multiclass

Clustering(788) Variable = SLC22A9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        2      0      0      0
  SLC22A9 WILD-TYPE     44     58     64     43
D788V1, multiclass
[1] "Remove cluster labels:" "SLC22A9 MUTATED"       
clus
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AY-4071 
"SLC22A9 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A9 MUTATED        1      1      0
  SLC22A9 WILD-TYPE     50     82     77
D788V2, multiclass
[1] "Remove cluster labels:" "SLC22A9 MUTATED"       
clus
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-AY-4071 
"SLC22A9 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        6      2      1      1
  SLC22A9 WILD-TYPE    172    181    100     19
D788V3, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A9 MUTATED        5      1      2
  SLC22A9 WILD-TYPE     82     79     98
D788V4, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A9 MUTATED        1      1      5
  SLC22A9 WILD-TYPE     88    159    133
D788V5, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A9 MUTATED        6      0      1
  SLC22A9 WILD-TYPE    176    133     71
D788V6, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               0               133
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        1      1      6      2
  SLC22A9 WILD-TYPE    111     95     86    184
D788V7, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               6                86
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC22A9 MUTATED        0      1      4      1      2      1      1
  SLC22A9 WILD-TYPE     60     49     45     39     61    124     98
D788V8, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        4      2      1      3
  SLC22A9 WILD-TYPE    126     76     67    193
D788V9, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC22A9 MUTATED        2      2      0      2      3      0      1      0
  SLC22A9 WILD-TYPE     38     60     28     78     66     48     42     28
                   vv
clus                CLUS_9
  SLC22A9 MUTATED        0
  SLC22A9 WILD-TYPE     74
D788V10, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        3      1      0      1
  SLC22A9 WILD-TYPE     30     30     27     18
D788V11, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A9 MUTATED        3      0      1      1
  SLC22A9 WILD-TYPE     51     10     23     21
D788V12, multiclass
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(789) Variable = C5ORF22 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF22 MUTATED        1      0      1      0
  C5ORF22 WILD-TYPE     45     58     63     43
D789V1, multiclass
[1] "Remove cluster labels:" "C5ORF22 MUTATED"       
clus
  C5ORF22 MUTATED C5ORF22 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AY-4071 
"C5ORF22 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF22 MUTATED        1      0      1
  C5ORF22 WILD-TYPE     50     83     76
D789V2, multiclass
[1] "Remove cluster labels:" "C5ORF22 MUTATED"       
clus
  C5ORF22 MUTATED C5ORF22 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AY-4071 
"C5ORF22 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF22 MUTATED        6      3      1      1
  C5ORF22 WILD-TYPE    172    180    100     19
D789V3, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF22 MUTATED        2      3      4
  C5ORF22 WILD-TYPE     85     77     96
D789V4, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               3                77
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF22 MUTATED        1      3      5
  C5ORF22 WILD-TYPE     88    157    133
D789V5, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF22 MUTATED        4      3      2
  C5ORF22 WILD-TYPE    178    130     70
D789V6, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF22 MUTATED        3      5      1      2
  C5ORF22 WILD-TYPE    109     91     91    184
D789V7, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               5                91
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C5ORF22 MUTATED        2      2      3      1      1      1      1
  C5ORF22 WILD-TYPE     58     48     46     39     62    124     98
D789V8, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF22 MUTATED        6      1      1      3
  C5ORF22 WILD-TYPE    124     77     67    193
D789V9, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C5ORF22 MUTATED        1      1      1      0      3      2      1      2
  C5ORF22 WILD-TYPE     39     61     27     80     66     46     42     26
                   vv
clus                CLUS_9
  C5ORF22 MUTATED        0
  C5ORF22 WILD-TYPE     74
D789V10, multiclass
        clus
vv       C5ORF22 MUTATED C5ORF22 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               2                46
  CLUS_7               1                42
  CLUS_8               2                26
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF22 MUTATED        0      1      0      1
  C5ORF22 WILD-TYPE     33     30     27     18
D789V11, multiclass
[1] "Remove cluster labels:" "C5ORF22 MUTATED"       
clus
  C5ORF22 MUTATED C5ORF22 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF22 MUTATED        1      0      1      0
  C5ORF22 WILD-TYPE     53     10     23     22
D789V12, multiclass
[1] "Remove cluster labels:" "C5ORF22 MUTATED"       
clus
  C5ORF22 MUTATED C5ORF22 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" "C5ORF22 WILD-TYPE" 

Clustering(790) Variable = FOXN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        1      0      0      2
  FOXN3 WILD-TYPE     45     58     64     41
D790V1, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        3      0      0
  FOXN3 WILD-TYPE     48     83     77
D790V2, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        9      1      1      0
  FOXN3 WILD-TYPE    169    182    100     20
D790V3, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        3      0      5
  FOXN3 WILD-TYPE     84     80     95
D790V4, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        2      1      6
  FOXN3 WILD-TYPE     87    159    132
D790V5, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        5      1      3
  FOXN3 WILD-TYPE    177    132     69
D790V6, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        1      4      3      3
  FOXN3 WILD-TYPE    111     92     89    183
D790V7, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXN3 MUTATED        1      0      4      1      2      0      3
  FOXN3 WILD-TYPE     59     50     45     39     61    125     96
D790V8, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        5      2      0      4
  FOXN3 WILD-TYPE    125     76     68    192
D790V9, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FOXN3 MUTATED        1      2      2      0      6      0      0      0
  FOXN3 WILD-TYPE     39     60     26     80     63     48     43     28
                 vv
clus              CLUS_9
  FOXN3 MUTATED        0
  FOXN3 WILD-TYPE     74
D790V10, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        1      0      0      1
  FOXN3 WILD-TYPE     32     31     27     18
D790V11, multiclass
[1] "Remove cluster labels:" "FOXN3 MUTATED"         
clus
  FOXN3 MUTATED FOXN3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511      TCGA-AD-5900 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901      TCGA-AD-6963 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        1      0      1      0
  FOXN3 WILD-TYPE     53     10     23     22
D790V12, multiclass
[1] "Remove cluster labels:" "FOXN3 MUTATED"         
clus
  FOXN3 MUTATED FOXN3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511      TCGA-AD-5900 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901      TCGA-AD-6963 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" "FOXN3 WILD-TYPE" 

Clustering(791) Variable = IL2RG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        0      0      0      0
  IL2RG WILD-TYPE     46     58     64     43
D791V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        0      0      0
  IL2RG WILD-TYPE     51     83     77
D791V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        8      0      0      0
  IL2RG WILD-TYPE    170    183    101     20
D791V3, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        4      0      4
  IL2RG WILD-TYPE     83     80     96
D791V4, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        3      1      4
  IL2RG WILD-TYPE     86    159    134
D791V5, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        6      0      2
  IL2RG WILD-TYPE    176    133     70
D791V6, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             6             176
  CLUS_2             0             133
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        0      4      4      0
  IL2RG WILD-TYPE    112     92     88    186
D791V7, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL2RG MUTATED        0      1      6      0      1      0      0
  IL2RG WILD-TYPE     60     49     43     40     62    125     99
D791V8, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        4      2      0      2
  IL2RG WILD-TYPE    126     76     68    194
D791V9, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL2RG MUTATED        1      2      0      0      4      0      1      0
  IL2RG WILD-TYPE     39     60     28     80     65     48     42     28
                 vv
clus              CLUS_9
  IL2RG MUTATED        0
  IL2RG WILD-TYPE     74
D791V10, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        1      0      0      3
  IL2RG WILD-TYPE     32     31     27     16
D791V11, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        2      0      2      0
  IL2RG WILD-TYPE     52     10     22     22
D791V12, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(792) Variable = CARD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD6 MUTATED        2      0      0      3
  CARD6 WILD-TYPE     44     58     64     40
D792V1, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CARD6 MUTATED        2      1      2
  CARD6 WILD-TYPE     49     82     75
D792V2, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD6 MUTATED       10      4      2      2
  CARD6 WILD-TYPE    168    179     99     18
D792V3, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CARD6 MUTATED        5      3      4
  CARD6 WILD-TYPE     82     77     96
D792V4, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CARD6 MUTATED        3      8      5
  CARD6 WILD-TYPE     86    152    133
D792V5, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             8             152
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CARD6 MUTATED        7      6      3
  CARD6 WILD-TYPE    175    127     69
D792V6, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD6 MUTATED        3      3      6      6
  CARD6 WILD-TYPE    109     93     86    180
D792V7, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CARD6 MUTATED        2      1      6      2      2      1      4
  CARD6 WILD-TYPE     58     49     43     38     61    124     95
D792V8, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD6 MUTATED        4      4      2      8
  CARD6 WILD-TYPE    126     74     66    188
D792V9, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CARD6 MUTATED        1      4      2      2      5      0      2      1
  CARD6 WILD-TYPE     39     58     26     78     64     48     41     27
                 vv
clus              CLUS_9
  CARD6 MUTATED        1
  CARD6 WILD-TYPE     73
D792V10, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD6 MUTATED        2      1      2      2
  CARD6 WILD-TYPE     31     30     25     17
D792V11, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD6 MUTATED        2      1      3      1
  CARD6 WILD-TYPE     52      9     21     21
D792V12, multiclass
        clus
vv       CARD6 MUTATED CARD6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(793) Variable = BAZ2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ2B MUTATED        3      0      0      2
  BAZ2B WILD-TYPE     43     58     64     41
D793V1, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ2B MUTATED        3      1      1
  BAZ2B WILD-TYPE     48     82     76
D793V2, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ2B MUTATED       12      4      3      0
  BAZ2B WILD-TYPE    166    179     98     20
D793V3, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ2B MUTATED        5      3      6
  BAZ2B WILD-TYPE     82     77     94
D793V4, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ2B MUTATED        1      8      8
  BAZ2B WILD-TYPE     88    152    130
D793V5, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAZ2B MUTATED        9      4      4
  BAZ2B WILD-TYPE    173    129     68
D793V6, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             9             173
  CLUS_2             4             129
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ2B MUTATED        2      6      5      6
  BAZ2B WILD-TYPE    110     90     87    180
D793V7, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAZ2B MUTATED        3      2      5      2      2      0      5
  BAZ2B WILD-TYPE     57     48     44     38     61    125     94
D793V8, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ2B MUTATED        6      3      2      8
  BAZ2B WILD-TYPE    124     75     66    188
D793V9, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BAZ2B MUTATED        0      4      2      2      7      0      3      0
  BAZ2B WILD-TYPE     40     58     26     78     62     48     40     28
                 vv
clus              CLUS_9
  BAZ2B MUTATED        1
  BAZ2B WILD-TYPE     73
D793V10, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ2B MUTATED        0      1      1      1
  BAZ2B WILD-TYPE     33     30     26     18
D793V11, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAZ2B MUTATED        1      1      1      0
  BAZ2B WILD-TYPE     53      9     23     22
D793V12, multiclass
        clus
vv       BAZ2B MUTATED BAZ2B WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(794) Variable = ZNF384 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF384 MUTATED        1      0      0      0
  ZNF384 WILD-TYPE     45     58     64     43
D794V1, multiclass
[1] "Remove cluster labels:" "ZNF384 MUTATED"        
clus
  ZNF384 MUTATED ZNF384 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF384 MUTATED        1      0      0
  ZNF384 WILD-TYPE     50     83     77
D794V2, multiclass
[1] "Remove cluster labels:" "ZNF384 MUTATED"        
clus
  ZNF384 MUTATED ZNF384 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ZNF384 WILD-TYPE" "ZNF384 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF384 MUTATED        5      2      1      0
  ZNF384 WILD-TYPE    173    181    100     20
D794V3, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF384 MUTATED        3      0      5
  ZNF384 WILD-TYPE     84     80     95
D794V4, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF384 MUTATED        0      2      6
  ZNF384 WILD-TYPE     89    158    132
D794V5, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF384 MUTATED        5      3      0
  ZNF384 WILD-TYPE    177    130     72
D794V6, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF384 MUTATED        2      4      2      1
  ZNF384 WILD-TYPE    110     92     90    185
D794V7, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF384 MUTATED        1      2      4      1      0      0      1
  ZNF384 WILD-TYPE     59     48     45     39     63    125     98
D794V8, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF384 MUTATED        4      3      0      2
  ZNF384 WILD-TYPE    126     75     68    194
D794V9, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF384 MUTATED        0      3      1      0      4      0      0      0
  ZNF384 WILD-TYPE     40     59     27     80     65     48     43     28
                  vv
clus               CLUS_9
  ZNF384 MUTATED        1
  ZNF384 WILD-TYPE     73
D794V10, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF384 MUTATED        1      1      0      1
  ZNF384 WILD-TYPE     32     30     27     18
D794V11, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF384 MUTATED        2      0      1      0
  ZNF384 WILD-TYPE     52     10     23     22
D794V12, multiclass
        clus
vv       ZNF384 MUTATED ZNF384 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(795) Variable = MORC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC2 MUTATED        2      1      0      2
  MORC2 WILD-TYPE     44     57     64     41
D795V1, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC2 MUTATED        2      1      2
  MORC2 WILD-TYPE     49     82     75
D795V2, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC2 MUTATED        9      2      1      2
  MORC2 WILD-TYPE    169    181    100     18
D795V3, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC2 MUTATED        5      2      2
  MORC2 WILD-TYPE     82     78     98
D795V4, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC2 MUTATED        1      7      4
  MORC2 WILD-TYPE     88    153    134
D795V5, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC2 MUTATED        5      6      1
  MORC2 WILD-TYPE    177    127     71
D795V6, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC2 MUTATED        1      3      4      6
  MORC2 WILD-TYPE    111     93     88    180
D795V7, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MORC2 MUTATED        2      1      5      1      0      1      4
  MORC2 WILD-TYPE     58     49     44     39     63    124     95
D795V8, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC2 MUTATED        3      1      1      8
  MORC2 WILD-TYPE    127     77     67    188
D795V9, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MORC2 MUTATED        2      2      2      1      4      0      0      0
  MORC2 WILD-TYPE     38     60     26     79     65     48     43     28
                 vv
clus              CLUS_9
  MORC2 MUTATED        2
  MORC2 WILD-TYPE     72
D795V10, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC2 MUTATED        1      0      1      2
  MORC2 WILD-TYPE     32     31     26     17
D795V11, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC2 MUTATED        2      0      2      0
  MORC2 WILD-TYPE     52     10     22     22
D795V12, multiclass
        clus
vv       MORC2 MUTATED MORC2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(796) Variable = OTX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        1      0      0      1
  OTX2 WILD-TYPE     45     58     64     42
D796V1, multiclass
[1] "Remove cluster labels:" "OTX2 MUTATED"          
clus
  OTX2 MUTATED OTX2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AY-4071 
"OTX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        0      1      1
  OTX2 WILD-TYPE     51     82     76
D796V2, multiclass
[1] "Remove cluster labels:" "OTX2 MUTATED"          
clus
  OTX2 MUTATED OTX2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AY-4071 
"OTX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        6      2      0      0
  OTX2 WILD-TYPE    172    181    101     20
D796V3, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        0      1      5
  OTX2 WILD-TYPE     87     79     95
D796V4, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        1      3      2
  OTX2 WILD-TYPE     88    157    136
D796V5, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        1      2      3
  OTX2 WILD-TYPE    181    131     69
D796V6, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        1      4      1      2
  OTX2 WILD-TYPE    111     92     91    184
D796V7, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OTX2 MUTATED        0      1      3      2      0      1      1
  OTX2 WILD-TYPE     60     49     46     38     63    124     98
D796V8, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        3      0      1      4
  OTX2 WILD-TYPE    127     78     67    192
D796V9, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  OTX2 MUTATED        1      0      1      2      3      0      1      0      0
  OTX2 WILD-TYPE     39     62     27     78     66     48     42     28     74
D796V10, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        0      0      0      1
  OTX2 WILD-TYPE     33     31     27     18
D796V11, multiclass
[1] "Remove cluster labels:" "OTX2 MUTATED"          
clus
  OTX2 MUTATED OTX2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-G5-6641 
"OTX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        0      0      1      0
  OTX2 WILD-TYPE     54     10     23     22
D796V12, multiclass
[1] "Remove cluster labels:" "OTX2 MUTATED"          
clus
  OTX2 MUTATED OTX2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" "OTX2 WILD-TYPE" 
    TCGA-G5-6641 
"OTX2 WILD-TYPE" 

Clustering(797) Variable = CYP4A22 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        0      1      0      1
  CYP4A22 WILD-TYPE     46     57     64     42
D797V1, multiclass
[1] "Remove cluster labels:" "CYP4A22 MUTATED"       
clus
  CYP4A22 MUTATED CYP4A22 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AY-4071 
"CYP4A22 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4A22 MUTATED        1      1      0
  CYP4A22 WILD-TYPE     50     82     77
D797V2, multiclass
[1] "Remove cluster labels:" "CYP4A22 MUTATED"       
clus
  CYP4A22 MUTATED CYP4A22 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" "CYP4A22 WILD-TYPE" 
       TCGA-AY-4071 
"CYP4A22 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        9      3      0      1
  CYP4A22 WILD-TYPE    169    180    101     19
D797V3, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4A22 MUTATED        4      3      4
  CYP4A22 WILD-TYPE     83     77     96
D797V4, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               3                77
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4A22 MUTATED        0      6      4
  CYP4A22 WILD-TYPE     89    154    134
D797V5, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               6               154
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4A22 MUTATED        4      6      0
  CYP4A22 WILD-TYPE    178    127     72
D797V6, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               6               127
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        6      2      3      2
  CYP4A22 WILD-TYPE    106     94     89    184
D797V7, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               6               106
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP4A22 MUTATED        4      1      2      1      3      1      1
  CYP4A22 WILD-TYPE     56     49     47     39     60    124     98
D797V8, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        4      5      2      2
  CYP4A22 WILD-TYPE    126     73     66    194
D797V9, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               5                73
  CLUS_3               2                66
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP4A22 MUTATED        2      3      2      0      2      3      0      1
  CYP4A22 WILD-TYPE     38     59     26     80     67     45     43     27
                   vv
clus                CLUS_9
  CYP4A22 MUTATED        0
  CYP4A22 WILD-TYPE     74
D797V10, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               3                45
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        2      2      0      1
  CYP4A22 WILD-TYPE     31     29     27     18
D797V11, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        1      0      1      3
  CYP4A22 WILD-TYPE     53     10     23     19
D797V12, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(798) Variable = C14ORF102 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        2      0      0      5
  C14ORF102 WILD-TYPE     44     58     64     38
D798V1, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 2                  44
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 5                  38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED        3      1      3
  C14ORF102 WILD-TYPE     48     82     74
D798V2, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 3                  48
  CLUS_2                 1                  82
  CLUS_3                 3                  74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED       16      1      1      0
  C14ORF102 WILD-TYPE    162    182    100     20
D798V3, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                16                 162
  CLUS_2                 1                 182
  CLUS_3                 1                 100
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED        4      3      5
  C14ORF102 WILD-TYPE     83     77     95
D798V4, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 4                  83
  CLUS_2                 3                  77
  CLUS_3                 5                  95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED        3      7      6
  C14ORF102 WILD-TYPE     86    153    132
D798V5, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 3                  86
  CLUS_2                 7                 153
  CLUS_3                 6                 132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED        7      7      2
  C14ORF102 WILD-TYPE    175    126     70
D798V6, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 7                 175
  CLUS_2                 7                 126
  CLUS_3                 2                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        4      5      3      7
  C14ORF102 WILD-TYPE    108     91     89    179
D798V7, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 4                 108
  CLUS_2                 5                  91
  CLUS_3                 3                  89
  CLUS_4                 7                 179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF102 MUTATED        4      1      5      0      3      0      6
  C14ORF102 WILD-TYPE     56     49     44     40     60    125     93
D798V8, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 4                  56
  CLUS_2                 1                  49
  CLUS_3                 5                  44
  CLUS_4                 0                  40
  CLUS_5                 3                  60
  CLUS_6                 0                 125
  CLUS_7                 6                  93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        6      5      0      8
  C14ORF102 WILD-TYPE    124     73     68    188
D798V9, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 6                 124
  CLUS_2                 5                  73
  CLUS_3                 0                  68
  CLUS_4                 8                 188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF102 MUTATED        1      4      2      0      9      2      0      0
  C14ORF102 WILD-TYPE     39     58     26     80     60     46     43     28
                     vv
clus                  CLUS_9
  C14ORF102 MUTATED        1
  C14ORF102 WILD-TYPE     73
D798V10, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 4                  58
  CLUS_3                 2                  26
  CLUS_4                 0                  80
  CLUS_5                 9                  60
  CLUS_6                 2                  46
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        0      1      0      2
  C14ORF102 WILD-TYPE     33     30     27     17
D798V11, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 0                  33
  CLUS_2                 1                  30
  CLUS_3                 0                  27
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        1      1      1      0
  C14ORF102 WILD-TYPE     53      9     23     22
D798V12, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 1                  53
  CLUS_2                 1                   9
  CLUS_3                 1                  23
  CLUS_4                 0                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(799) Variable = LPGAT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPGAT1 MUTATED        0      0      0      0
  LPGAT1 WILD-TYPE     46     58     64     43
D799V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPGAT1 MUTATED        0      0      0
  LPGAT1 WILD-TYPE     51     83     77
D799V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPGAT1 MUTATED        1      3      0      0
  LPGAT1 WILD-TYPE    177    180    101     20
D799V3, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              1              177
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPGAT1 MUTATED        0      3      1
  LPGAT1 WILD-TYPE     87     77     99
D799V4, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              3               77
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPGAT1 MUTATED        1      1      2
  LPGAT1 WILD-TYPE     88    159    136
D799V5, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LPGAT1 MUTATED        3      1      0
  LPGAT1 WILD-TYPE    179    132     72
D799V6, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPGAT1 MUTATED        2      0      2      0
  LPGAT1 WILD-TYPE    110     96     90    186
D799V7, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              0               96
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LPGAT1 MUTATED        3      0      1      0      0      0      0
  LPGAT1 WILD-TYPE     57     50     48     40     63    125     99
D799V8, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPGAT1 MUTATED        4      0      0      0
  LPGAT1 WILD-TYPE    126     78     68    196
D799V9, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LPGAT1 MUTATED        1      0      0      1      0      1      1      0
  LPGAT1 WILD-TYPE     39     62     28     79     69     47     42     28
                  vv
clus               CLUS_9
  LPGAT1 MUTATED        0
  LPGAT1 WILD-TYPE     74
D799V10, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPGAT1 MUTATED        0      1      0      2
  LPGAT1 WILD-TYPE     33     30     27     17
D799V11, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPGAT1 MUTATED        2      0      0      1
  LPGAT1 WILD-TYPE     52     10     24     21
D799V12, multiclass
        clus
vv       LPGAT1 MUTATED LPGAT1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(800) Variable = MAGEC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED        4      1      3      3
  MAGEC1 WILD-TYPE     42     57     61     40
D800V1, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              3               61
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEC1 MUTATED        4      5      2
  MAGEC1 WILD-TYPE     47     78     75
D800V2, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              5               78
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED       15     10      5      2
  MAGEC1 WILD-TYPE    163    173     96     18
D800V3, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1             15              163
  CLUS_2             10              173
  CLUS_3              5               96
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEC1 MUTATED        5      5     12
  MAGEC1 WILD-TYPE     82     75     88
D800V4, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              5               75
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEC1 MUTATED        2     12     10
  MAGEC1 WILD-TYPE     87    148    128
D800V5, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2             12              148
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEC1 MUTATED       11      8      5
  MAGEC1 WILD-TYPE    171    125     67
D800V6, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              8              125
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED        7      8      9      9
  MAGEC1 WILD-TYPE    105     88     83    177
D800V7, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              7              105
  CLUS_2              8               88
  CLUS_3              9               83
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGEC1 MUTATED        9      4      3      2      4      4      7
  MAGEC1 WILD-TYPE     51     46     46     38     59    121     92
D800V8, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              9               51
  CLUS_2              4               46
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              4               59
  CLUS_6              4              121
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED       13      4      5     10
  MAGEC1 WILD-TYPE    117     74     63    186
D800V9, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1             13              117
  CLUS_2              4               74
  CLUS_3              5               63
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAGEC1 MUTATED        2      4      6      8      4      3      1      1
  MAGEC1 WILD-TYPE     38     58     22     72     65     45     42     27
                  vv
clus               CLUS_9
  MAGEC1 MUTATED        3
  MAGEC1 WILD-TYPE     71
D800V10, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              6               22
  CLUS_4              8               72
  CLUS_5              4               65
  CLUS_6              3               45
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED        4      1      2      1
  MAGEC1 WILD-TYPE     29     30     25     18
D800V11, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEC1 MUTATED        2      0      5      1
  MAGEC1 WILD-TYPE     52     10     19     21
D800V12, multiclass
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              5               19
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(801) Variable = EEA1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        2      1      1      2
  EEA1 WILD-TYPE     44     57     63     41
D801V1, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED        2      2      2
  EEA1 WILD-TYPE     49     81     75
D801V2, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED       13      2      1      0
  EEA1 WILD-TYPE    165    181    100     20
D801V3, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED        5      0      5
  EEA1 WILD-TYPE     82     80     95
D801V4, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED        4      6      5
  EEA1 WILD-TYPE     85    154    133
D801V5, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED        5      7      3
  EEA1 WILD-TYPE    177    126     69
D801V6, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            7            126
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        1      6      3      6
  EEA1 WILD-TYPE    111     90     89    180
D801V7, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EEA1 MUTATED        1      1      5      1      1      1      6
  EEA1 WILD-TYPE     59     49     44     39     62    124     93
D801V8, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        5      1      0      9
  EEA1 WILD-TYPE    125     77     68    187
D801V9, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EEA1 MUTATED        2      3      1      1      6      0      0      0      2
  EEA1 WILD-TYPE     38     59     27     79     63     48     43     28     72
D801V10, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        0      0      0      2
  EEA1 WILD-TYPE     33     31     27     17
D801V11, multiclass
[1] "Remove cluster labels:" "EEA1 MUTATED"          
clus
  EEA1 MUTATED EEA1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        1      0      1      0
  EEA1 WILD-TYPE     53     10     23     22
D801V12, multiclass
[1] "Remove cluster labels:" "EEA1 MUTATED"          
clus
  EEA1 MUTATED EEA1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" "EEA1 WILD-TYPE" 

Clustering(802) Variable = ADAM22 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM22 MUTATED        0      0      1      3
  ADAM22 WILD-TYPE     46     58     63     40
D802V1, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM22 MUTATED        2      0      2
  ADAM22 WILD-TYPE     49     83     75
D802V2, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM22 MUTATED        7      0      3      1
  ADAM22 WILD-TYPE    171    183     98     19
D802V3, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              0              183
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM22 MUTATED        5      0      2
  ADAM22 WILD-TYPE     82     80     98
D802V4, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM22 MUTATED        2      3      6
  ADAM22 WILD-TYPE     87    157    132
D802V5, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM22 MUTATED        7      3      1
  ADAM22 WILD-TYPE    175    130     71
D802V6, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM22 MUTATED        0      3      4      4
  ADAM22 WILD-TYPE    112     93     88    182
D802V7, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM22 MUTATED        2      0      4      2      0      1      2
  ADAM22 WILD-TYPE     58     50     45     38     63    124     97
D802V8, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM22 MUTATED        4      2      1      3
  ADAM22 WILD-TYPE    126     76     67    193
D802V9, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM22 MUTATED        0      3      0      1      3      0      2      0
  ADAM22 WILD-TYPE     40     59     28     79     66     48     41     28
                  vv
clus               CLUS_9
  ADAM22 MUTATED        1
  ADAM22 WILD-TYPE     73
D802V10, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM22 MUTATED        1      1      1      4
  ADAM22 WILD-TYPE     32     30     26     15
D802V11, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM22 MUTATED        5      0      2      0
  ADAM22 WILD-TYPE     49     10     22     22
D802V12, multiclass
        clus
vv       ADAM22 MUTATED ADAM22 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(803) Variable = DDB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        2      0      0      2
  DDB1 WILD-TYPE     44     58     64     41
D803V1, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        3      0      1
  DDB1 WILD-TYPE     48     83     76
D803V2, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED       12      2      1      0
  DDB1 WILD-TYPE    166    181    100     20
D803V3, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        2      2      7
  DDB1 WILD-TYPE     85     78     93
D803V4, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        0      6      5
  DDB1 WILD-TYPE     89    154    133
D803V5, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDB1 MUTATED        5      5      1
  DDB1 WILD-TYPE    177    128     71
D803V6, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        3      5      3      4
  DDB1 WILD-TYPE    109     91     89    182
D803V7, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDB1 MUTATED        3      3      4      0      1      0      4
  DDB1 WILD-TYPE     57     47     45     40     62    125     95
D803V8, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        6      3      0      5
  DDB1 WILD-TYPE    124     75     68    191
D803V9, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DDB1 MUTATED        1      1      0      5      5      1      0      1      0
  DDB1 WILD-TYPE     39     61     28     75     64     47     43     27     74
D803V10, multiclass
        clus
vv       DDB1 MUTATED DDB1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            5             75
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        1      1      0      0
  DDB1 WILD-TYPE     32     30     27     19
D803V11, multiclass
[1] "Remove cluster labels:" "DDB1 MUTATED"          
clus
  DDB1 MUTATED DDB1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDB1 MUTATED        1      0      0      1
  DDB1 WILD-TYPE     53     10     24     21
D803V12, multiclass
[1] "Remove cluster labels:" "DDB1 MUTATED"          
clus
  DDB1 MUTATED DDB1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" "DDB1 WILD-TYPE" 

Clustering(804) Variable = GLI2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI2 MUTATED        0      1      0      1
  GLI2 WILD-TYPE     46     57     64     42
D804V1, multiclass
[1] "Remove cluster labels:" "GLI2 MUTATED"          
clus
  GLI2 MUTATED GLI2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AY-4071 
"GLI2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI2 MUTATED        1      1      0
  GLI2 WILD-TYPE     50     82     77
D804V2, multiclass
[1] "Remove cluster labels:" "GLI2 MUTATED"          
clus
  GLI2 MUTATED GLI2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" "GLI2 WILD-TYPE" 
    TCGA-AY-4071 
"GLI2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI2 MUTATED       11      8      5      2
  GLI2 WILD-TYPE    167    175     96     18
D804V3, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            8            175
  CLUS_3            5             96
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI2 MUTATED       11      5      6
  GLI2 WILD-TYPE     76     75     94
D804V4, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1           11             76
  CLUS_2            5             75
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI2 MUTATED        6      7     11
  GLI2 WILD-TYPE     83    153    127
D804V5, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1            6             83
  CLUS_2            7            153
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI2 MUTATED       13      8      3
  GLI2 WILD-TYPE    169    125     69
D804V6, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1           13            169
  CLUS_2            8            125
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI2 MUTATED        5      7     11      3
  GLI2 WILD-TYPE    107     89     81    183
D804V7, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            7             89
  CLUS_3           11             81
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLI2 MUTATED        3      1      9      5      5      1      2
  GLI2 WILD-TYPE     57     49     40     35     58    124     97
D804V8, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            9             40
  CLUS_4            5             35
  CLUS_5            5             58
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI2 MUTATED       14      5      3      4
  GLI2 WILD-TYPE    116     73     65    192
D804V9, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1           14            116
  CLUS_2            5             73
  CLUS_3            3             65
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GLI2 MUTATED        6      6      2      3      4      0      4      1      0
  GLI2 WILD-TYPE     34     56     26     77     65     48     39     27     74
D804V10, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            4             39
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI2 MUTATED        3      1      0      4
  GLI2 WILD-TYPE     30     30     27     15
D804V11, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI2 MUTATED        5      1      1      1
  GLI2 WILD-TYPE     49      9     23     21
D804V12, multiclass
        clus
vv       GLI2 MUTATED GLI2 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(805) Variable = ADAM30 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        2      0      1      2
  ADAM30 WILD-TYPE     44     58     63     41
D805V1, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        3      0      2
  ADAM30 WILD-TYPE     48     83     75
D805V2, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED       11      2      0      0
  ADAM30 WILD-TYPE    167    181    101     20
D805V3, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        5      2      1
  ADAM30 WILD-TYPE     82     78     99
D805V4, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        1      2      7
  ADAM30 WILD-TYPE     88    158    131
D805V5, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        7      2      1
  ADAM30 WILD-TYPE    175    131     71
D805V6, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        1      4      4      4
  ADAM30 WILD-TYPE    111     92     88    182
D805V7, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM30 MUTATED        1      1      5      1      1      0      4
  ADAM30 WILD-TYPE     59     49     44     39     62    125     95
D805V8, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        4      2      1      6
  ADAM30 WILD-TYPE    126     76     67    190
D805V9, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM30 MUTATED        0      4      0      0      5      1      1      1
  ADAM30 WILD-TYPE     40     58     28     80     64     47     42     27
                  vv
clus               CLUS_9
  ADAM30 MUTATED        1
  ADAM30 WILD-TYPE     73
D805V10, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        2      1      1      1
  ADAM30 WILD-TYPE     31     30     26     18
D805V11, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        2      0      2      1
  ADAM30 WILD-TYPE     52     10     22     21
D805V12, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(806) Variable = RGS22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        1      0      0      3
  RGS22 WILD-TYPE     45     58     64     40
D806V1, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED        1      2      1
  RGS22 WILD-TYPE     50     81     76
D806V2, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED       20      4      3      0
  RGS22 WILD-TYPE    158    179     98     20
D806V3, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1            20             158
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED       13      0     10
  RGS22 WILD-TYPE     74     80     90
D806V4, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1            13              74
  CLUS_2             0              80
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED        2     10     11
  RGS22 WILD-TYPE     87    150    127
D806V5, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            10             150
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED       10      9      4
  RGS22 WILD-TYPE    172    124     68
D806V6, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        1     11     10      5
  RGS22 WILD-TYPE    111     85     82    181
D806V7, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1             111
  CLUS_2            11              85
  CLUS_3            10              82
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGS22 MUTATED        4      3     12      2      2      1      3
  RGS22 WILD-TYPE     56     47     37     38     61    124     96
D806V8, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3            12              37
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED       15      6      0      5
  RGS22 WILD-TYPE    115     72     68    191
D806V9, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1            15             115
  CLUS_2             6              72
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RGS22 MUTATED        3      7      2      2      5      1      3      0
  RGS22 WILD-TYPE     37     55     26     78     64     47     40     28
                 vv
clus              CLUS_9
  RGS22 MUTATED        3
  RGS22 WILD-TYPE     71
D806V10, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        0      1      0      6
  RGS22 WILD-TYPE     33     30     27     13
D806V11, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        4      0      3      0
  RGS22 WILD-TYPE     50     10     21     22
D806V12, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(807) Variable = PPP1R3A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R3A MUTATED        3      0      2      7
  PPP1R3A WILD-TYPE     43     58     62     36
D807V1, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               2                62
  CLUS_4               7                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP1R3A MUTATED        5      3      4
  PPP1R3A WILD-TYPE     46     80     73
D807V2, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               5                46
  CLUS_2               3                80
  CLUS_3               4                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R3A MUTATED       20     10      8      0
  PPP1R3A WILD-TYPE    158    173     93     20
D807V3, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1              20               158
  CLUS_2              10               173
  CLUS_3               8                93
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP1R3A MUTATED        8      8     10
  PPP1R3A WILD-TYPE     79     72     90
D807V4, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               8                79
  CLUS_2               8                72
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP1R3A MUTATED        5     15      9
  PPP1R3A WILD-TYPE     84    145    129
D807V5, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               5                84
  CLUS_2              15               145
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP1R3A MUTATED       11     12      6
  PPP1R3A WILD-TYPE    171    121     66
D807V6, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1              11               171
  CLUS_2              12               121
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R3A MUTATED       11      8      6     12
  PPP1R3A WILD-TYPE    101     88     86    174
D807V7, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1              11               101
  CLUS_2               8                88
  CLUS_3               6                86
  CLUS_4              12               174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP1R3A MUTATED        8      5      8      3      2      3      8
  PPP1R3A WILD-TYPE     52     45     41     37     61    122     91
D807V8, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               8                52
  CLUS_2               5                45
  CLUS_3               8                41
  CLUS_4               3                37
  CLUS_5               2                61
  CLUS_6               3               122
  CLUS_7               8                91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R3A MUTATED       14      6      2     14
  PPP1R3A WILD-TYPE    116     72     66    182
D807V9, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1              14               116
  CLUS_2               6                72
  CLUS_3               2                66
  CLUS_4              14               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPP1R3A MUTATED        3      4      5      8      4      2      5      1
  PPP1R3A WILD-TYPE     37     58     23     72     65     46     38     27
                   vv
clus                CLUS_9
  PPP1R3A MUTATED        4
  PPP1R3A WILD-TYPE     70
D807V10, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               3                37
  CLUS_2               4                58
  CLUS_3               5                23
  CLUS_4               8                72
  CLUS_5               4                65
  CLUS_6               2                46
  CLUS_7               5                38
  CLUS_8               1                27
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R3A MUTATED        3      0      0      2
  PPP1R3A WILD-TYPE     30     31     27     17
D807V11, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               3                30
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R3A MUTATED        3      0      1      1
  PPP1R3A WILD-TYPE     51     10     23     21
D807V12, multiclass
        clus
vv       PPP1R3A MUTATED PPP1R3A WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(808) Variable = CCR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR2 MUTATED        0      0      0      0
  CCR2 WILD-TYPE     46     58     64     43
D808V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR2 MUTATED        0      0      0
  CCR2 WILD-TYPE     51     83     77
D808V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR2 MUTATED        5      2      0      0
  CCR2 WILD-TYPE    173    181    101     20
D808V3, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR2 MUTATED        2      2      3
  CCR2 WILD-TYPE     85     78     97
D808V4, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR2 MUTATED        0      2      4
  CCR2 WILD-TYPE     89    158    134
D808V5, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR2 MUTATED        4      2      0
  CCR2 WILD-TYPE    178    131     72
D808V6, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR2 MUTATED        2      1      4      0
  CCR2 WILD-TYPE    110     95     88    186
D808V7, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            4             88
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCR2 MUTATED        1      0      2      2      2      0      0
  CCR2 WILD-TYPE     59     50     47     38     61    125     99
D808V8, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR2 MUTATED        5      2      0      0
  CCR2 WILD-TYPE    125     76     68    196
D808V9, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CCR2 MUTATED        1      2      0      3      1      0      0      0      0
  CCR2 WILD-TYPE     39     60     28     77     68     48     43     28     74
D808V10, multiclass
        clus
vv       CCR2 MUTATED CCR2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR2 MUTATED        1      0      0      1
  CCR2 WILD-TYPE     32     31     27     18
D808V11, multiclass
[1] "Remove cluster labels:" "CCR2 MUTATED"          
clus
  CCR2 MUTATED CCR2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR2 MUTATED        2      0      0      0
  CCR2 WILD-TYPE     52     10     24     22
D808V12, multiclass
[1] "Remove cluster labels:" "CCR2 MUTATED"          
clus
  CCR2 MUTATED CCR2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" "CCR2 WILD-TYPE" 

Clustering(809) Variable = OR4D2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D2 MUTATED        0      0      0      0
  OR4D2 WILD-TYPE     46     58     64     43
D809V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4D2 MUTATED        0      0      0
  OR4D2 WILD-TYPE     51     83     77
D809V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D2 MUTATED        3      1      0      0
  OR4D2 WILD-TYPE    175    182    101     20
D809V3, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4D2 MUTATED        1      0      3
  OR4D2 WILD-TYPE     86     80     97
D809V4, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4D2 MUTATED        0      1      3
  OR4D2 WILD-TYPE     89    159    135
D809V5, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4D2 MUTATED        4      0      0
  OR4D2 WILD-TYPE    178    133     72
D809V6, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D2 MUTATED        0      2      2      0
  OR4D2 WILD-TYPE    112     94     90    186
D809V7, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4D2 MUTATED        0      1      3      0      0      0      0
  OR4D2 WILD-TYPE     60     49     46     40     63    125     99
D809V8, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D2 MUTATED        1      1      0      2
  OR4D2 WILD-TYPE    129     77     68    194
D809V9, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4D2 MUTATED        0      1      0      1      2      0      0      0
  OR4D2 WILD-TYPE     40     61     28     79     67     48     43     28
                 vv
clus              CLUS_9
  OR4D2 MUTATED        0
  OR4D2 WILD-TYPE     74
D809V10, multiclass
        clus
vv       OR4D2 MUTATED OR4D2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D2 MUTATED        0      0      0      2
  OR4D2 WILD-TYPE     33     31     27     17
D809V11, multiclass
[1] "Remove cluster labels:" "OR4D2 MUTATED"         
clus
  OR4D2 MUTATED OR4D2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4D2 MUTATED        1      0      1      0
  OR4D2 WILD-TYPE     53     10     23     22
D809V12, multiclass
[1] "Remove cluster labels:" "OR4D2 MUTATED"         
clus
  OR4D2 MUTATED OR4D2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" "OR4D2 WILD-TYPE" 

Clustering(810) Variable = OR4M2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        1      0      0      4
  OR4M2 WILD-TYPE     45     58     64     39
D810V1, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED        2      1      2
  OR4M2 WILD-TYPE     49     82     75
D810V2, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED       16      0      0      0
  OR4M2 WILD-TYPE    162    183    101     20
D810V3, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED        5      0      6
  OR4M2 WILD-TYPE     82     80     94
D810V4, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED        2      6      6
  OR4M2 WILD-TYPE     87    154    132
D810V5, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED        6      6      2
  OR4M2 WILD-TYPE    176    127     70
D810V6, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        0      5      6      5
  OR4M2 WILD-TYPE    112     91     86    181
D810V7, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             6              86
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4M2 MUTATED        1      1      9      0      1      0      4
  OR4M2 WILD-TYPE     59     49     40     40     62    125     95
D810V8, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        5      3      0      8
  OR4M2 WILD-TYPE    125     75     68    188
D810V9, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4M2 MUTATED        1      5      2      1      7      0      0      0
  OR4M2 WILD-TYPE     39     57     26     79     62     48     43     28
                 vv
clus              CLUS_9
  OR4M2 MUTATED        0
  OR4M2 WILD-TYPE     74
D810V10, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        0      0      0      3
  OR4M2 WILD-TYPE     33     31     27     16
D810V11, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        1      0      2      0
  OR4M2 WILD-TYPE     53     10     22     22
D810V12, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(811) Variable = EYS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYS MUTATED        5      0      1      6
  EYS WILD-TYPE     41     58     63     37
D811V1, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           5            41
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           6            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EYS MUTATED        9      0      3
  EYS WILD-TYPE     42     83     74
D811V2, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           9            42
  CLUS_2           0            83
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYS MUTATED       27      9      3      0
  EYS WILD-TYPE    151    174     98     20
D811V3, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1          27           151
  CLUS_2           9           174
  CLUS_3           3            98
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EYS MUTATED       11      5     14
  EYS WILD-TYPE     76     75     86
D811V4, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1          11            76
  CLUS_2           5            75
  CLUS_3          14            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EYS MUTATED        6     16     13
  EYS WILD-TYPE     83    144    125
D811V5, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           6            83
  CLUS_2          16           144
  CLUS_3          13           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EYS MUTATED       19     10      6
  EYS WILD-TYPE    163    123     66
D811V6, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1          19           163
  CLUS_2          10           123
  CLUS_3           6            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYS MUTATED        7     11     12     11
  EYS WILD-TYPE    105     85     80    175
D811V7, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           7           105
  CLUS_2          11            85
  CLUS_3          12            80
  CLUS_4          11           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EYS MUTATED        5      5     13      2      5      1     10
  EYS WILD-TYPE     55     45     36     38     58    124     89
D811V8, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           5            55
  CLUS_2           5            45
  CLUS_3          13            36
  CLUS_4           2            38
  CLUS_5           5            58
  CLUS_6           1           124
  CLUS_7          10            89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYS MUTATED       15      8      4     12
  EYS WILD-TYPE    115     70     64    184
D811V9, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1          15           115
  CLUS_2           8            70
  CLUS_3           4            64
  CLUS_4          12           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EYS MUTATED        3      6      1      4     12      3      8      1      1
  EYS WILD-TYPE     37     56     27     76     57     45     35     27     73
D811V10, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           3            37
  CLUS_2           6            56
  CLUS_3           1            27
  CLUS_4           4            76
  CLUS_5          12            57
  CLUS_6           3            45
  CLUS_7           8            35
  CLUS_8           1            27
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYS MUTATED        7      0      0      5
  EYS WILD-TYPE     26     31     27     14
D811V11, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           7            26
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           5            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYS MUTATED        8      0      1      3
  EYS WILD-TYPE     46     10     23     19
D811V12, multiclass
        clus
vv       EYS MUTATED EYS WILD-TYPE
  CLUS_1           8            46
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           3            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(812) Variable = ARNT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT2 MUTATED        3      0      0      2
  ARNT2 WILD-TYPE     43     58     64     41
D812V1, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARNT2 MUTATED        3      1      1
  ARNT2 WILD-TYPE     48     82     76
D812V2, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT2 MUTATED        9      2      2      1
  ARNT2 WILD-TYPE    169    181     99     19
D812V3, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARNT2 MUTATED        3      2      4
  ARNT2 WILD-TYPE     84     78     96
D812V4, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARNT2 MUTATED        1      4      7
  ARNT2 WILD-TYPE     88    156    131
D812V5, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARNT2 MUTATED        8      2      2
  ARNT2 WILD-TYPE    174    131     70
D812V6, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT2 MUTATED        2      3      4      5
  ARNT2 WILD-TYPE    110     93     88    181
D812V7, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARNT2 MUTATED        2      1      5      0      2      1      3
  ARNT2 WILD-TYPE     58     49     44     40     61    124     96
D812V8, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT2 MUTATED        3      4      1      5
  ARNT2 WILD-TYPE    127     74     67    191
D812V9, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARNT2 MUTATED        0      4      1      1      6      0      1      0
  ARNT2 WILD-TYPE     40     58     27     79     63     48     42     28
                 vv
clus              CLUS_9
  ARNT2 MUTATED        0
  ARNT2 WILD-TYPE     74
D812V10, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT2 MUTATED        1      1      1      1
  ARNT2 WILD-TYPE     32     30     26     18
D812V11, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT2 MUTATED        2      1      0      1
  ARNT2 WILD-TYPE     52      9     24     21
D812V12, multiclass
        clus
vv       ARNT2 MUTATED ARNT2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(813) Variable = NIPBL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        9      0      1      3
  NIPBL WILD-TYPE     37     58     63     40
D813V1, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             9              37
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        8      2      3
  NIPBL WILD-TYPE     43     81     74
D813V2, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED       28      6      0      3
  NIPBL WILD-TYPE    150    177    101     17
D813V3, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            28             150
  CLUS_2             6             177
  CLUS_3             0             101
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       14      3      6
  NIPBL WILD-TYPE     73     77     94
D813V4, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            14              73
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED        3     12     17
  NIPBL WILD-TYPE     86    148    121
D813V5, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              86
  CLUS_2            12             148
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NIPBL MUTATED       15     11      6
  NIPBL WILD-TYPE    167    122     66
D813V6, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            15             167
  CLUS_2            11             122
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        5      9      9     14
  NIPBL WILD-TYPE    107     87     83    172
D813V7, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5             107
  CLUS_2             9              87
  CLUS_3             9              83
  CLUS_4            14             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIPBL MUTATED        2      5      9      4      3      2     12
  NIPBL WILD-TYPE     58     45     40     36     60    123     87
D813V8, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2              58
  CLUS_2             5              45
  CLUS_3             9              40
  CLUS_4             4              36
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED       12      7      0     18
  NIPBL WILD-TYPE    118     71     68    178
D813V9, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1            12             118
  CLUS_2             7              71
  CLUS_3             0              68
  CLUS_4            18             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NIPBL MUTATED        3      7      4      5     10      1      2      3
  NIPBL WILD-TYPE     37     55     24     75     59     47     41     25
                 vv
clus              CLUS_9
  NIPBL MUTATED        2
  NIPBL WILD-TYPE     72
D813V10, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             3              37
  CLUS_2             7              55
  CLUS_3             4              24
  CLUS_4             5              75
  CLUS_5            10              59
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             3              25
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        2      1      1      4
  NIPBL WILD-TYPE     31     30     26     15
D813V11, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIPBL MUTATED        5      0      3      0
  NIPBL WILD-TYPE     49     10     21     22
D813V12, multiclass
        clus
vv       NIPBL MUTATED NIPBL WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(814) Variable = G2E3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        1      0      1      2
  G2E3 WILD-TYPE     45     58     63     41
D814V1, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G2E3 MUTATED        2      0      2
  G2E3 WILD-TYPE     49     83     75
D814V2, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED       12      2      1      0
  G2E3 WILD-TYPE    166    181    100     20
D814V3, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G2E3 MUTATED        7      1      3
  G2E3 WILD-TYPE     80     79     97
D814V4, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G2E3 MUTATED        1      6      7
  G2E3 WILD-TYPE     88    154    131
D814V5, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  G2E3 MUTATED        5      6      3
  G2E3 WILD-TYPE    177    127     69
D814V6, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            6            127
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        2      6      2      5
  G2E3 WILD-TYPE    110     90     90    181
D814V7, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G2E3 MUTATED        2      3      3      1      2      0      4
  G2E3 WILD-TYPE     58     47     46     39     61    125     95
D814V8, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        3      3      3      5
  G2E3 WILD-TYPE    127     75     65    191
D814V9, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            3             65
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  G2E3 MUTATED        0      2      1      0      4      0      4      0      3
  G2E3 WILD-TYPE     40     60     27     80     65     48     39     28     71
D814V10, multiclass
        clus
vv       G2E3 MUTATED G2E3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        2      0      0      0
  G2E3 WILD-TYPE     31     31     27     19
D814V11, multiclass
[1] "Remove cluster labels:" "G2E3 MUTATED"          
clus
  G2E3 MUTATED G2E3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G2E3 MUTATED        1      0      0      1
  G2E3 WILD-TYPE     53     10     24     21
D814V12, multiclass
[1] "Remove cluster labels:" "G2E3 MUTATED"          
clus
  G2E3 MUTATED G2E3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" "G2E3 WILD-TYPE" 

Clustering(815) Variable = NOS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        1      1      0      0
  NOS3 WILD-TYPE     45     57     64     43
D815V1, multiclass
[1] "Remove cluster labels:" "NOS3 MUTATED"          
clus
  NOS3 MUTATED NOS3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3979     TCGA-AA-3980 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AY-4071 
"NOS3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        1      0      1
  NOS3 WILD-TYPE     50     83     76
D815V2, multiclass
[1] "Remove cluster labels:" "NOS3 MUTATED"          
clus
  NOS3 MUTATED NOS3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3979     TCGA-AA-3980 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" "NOS3 WILD-TYPE" 
    TCGA-AY-4071 
"NOS3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED       14      3      3      0
  NOS3 WILD-TYPE    164    180     98     20
D815V3, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        4      2     12
  NOS3 WILD-TYPE     83     78     88
D815V4, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3           12             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        2      8      6
  NOS3 WILD-TYPE     87    152    132
D815V5, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            8            152
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED       10      6      0
  NOS3 WILD-TYPE    172    127     72
D815V6, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        3     10      5      2
  NOS3 WILD-TYPE    109     86     87    184
D815V7, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2           10             86
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOS3 MUTATED        2      2     11      1      1      1      2
  NOS3 WILD-TYPE     58     48     38     39     62    124     97
D815V8, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3           11             38
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED       13      3      1      3
  NOS3 WILD-TYPE    117     75     67    193
D815V9, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NOS3 MUTATED        2      7      0      3      6      1      1      0      0
  NOS3 WILD-TYPE     38     55     28     77     63     47     42     28     74
D815V10, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            7             55
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        2      0      1      4
  NOS3 WILD-TYPE     31     31     26     15
D815V11, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        4      0      3      0
  NOS3 WILD-TYPE     50     10     21     22
D815V12, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(816) Variable = EFEMP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFEMP1 MUTATED        2      0      1      0
  EFEMP1 WILD-TYPE     44     58     63     43
D816V1, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFEMP1 MUTATED        2      0      1
  EFEMP1 WILD-TYPE     49     83     76
D816V2, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFEMP1 MUTATED        9      6      5      0
  EFEMP1 WILD-TYPE    169    177     96     20
D816V3, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              6              177
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFEMP1 MUTATED        9      2      6
  EFEMP1 WILD-TYPE     78     78     94
D816V4, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFEMP1 MUTATED        0      6     14
  EFEMP1 WILD-TYPE     89    154    124
D816V5, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3             14              124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EFEMP1 MUTATED       13      6      1
  EFEMP1 WILD-TYPE    169    127     71
D816V6, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFEMP1 MUTATED        4      3      9      4
  EFEMP1 WILD-TYPE    108     93     83    182
D816V7, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              9               83
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFEMP1 MUTATED        5      4      5      0      2      2      2
  EFEMP1 WILD-TYPE     55     46     44     40     61    123     97
D816V8, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              4               46
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFEMP1 MUTATED        9      5      2      4
  EFEMP1 WILD-TYPE    121     73     66    192
D816V9, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFEMP1 MUTATED        3      5      1      5      2      0      2      1
  EFEMP1 WILD-TYPE     37     57     27     75     67     48     41     27
                  vv
clus               CLUS_9
  EFEMP1 MUTATED        1
  EFEMP1 WILD-TYPE     73
D816V10, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              5               75
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFEMP1 MUTATED        1      2      2      3
  EFEMP1 WILD-TYPE     32     29     25     16
D816V11, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFEMP1 MUTATED        6      0      1      1
  EFEMP1 WILD-TYPE     48     10     23     21
D816V12, multiclass
        clus
vv       EFEMP1 MUTATED EFEMP1 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(817) Variable = SPANXN2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN2 MUTATED        3      0      0      0
  SPANXN2 WILD-TYPE     43     58     64     43
D817V1, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN2 MUTATED        3      0      0
  SPANXN2 WILD-TYPE     48     83     77
D817V2, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN2 MUTATED        5      1      1      0
  SPANXN2 WILD-TYPE    173    182    100     20
D817V3, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN2 MUTATED        3      1      1
  SPANXN2 WILD-TYPE     84     79     99
D817V4, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN2 MUTATED        0      2      5
  SPANXN2 WILD-TYPE     89    158    133
D817V5, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN2 MUTATED        4      2      1
  SPANXN2 WILD-TYPE    178    131     71
D817V6, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN2 MUTATED        1      3      1      3
  SPANXN2 WILD-TYPE    111     93     91    183
D817V7, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPANXN2 MUTATED        1      2      2      0      0      0      3
  SPANXN2 WILD-TYPE     59     48     47     40     63    125     96
D817V8, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN2 MUTATED        3      1      0      4
  SPANXN2 WILD-TYPE    127     77     68    192
D817V9, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPANXN2 MUTATED        1      1      0      1      4      0      0      0
  SPANXN2 WILD-TYPE     39     61     28     79     65     48     43     28
                   vv
clus                CLUS_9
  SPANXN2 MUTATED        1
  SPANXN2 WILD-TYPE     73
D817V10, multiclass
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN2 MUTATED        1      0      0      1
  SPANXN2 WILD-TYPE     32     31     27     18
D817V11, multiclass
[1] "Remove cluster labels:" "SPANXN2 MUTATED"       
clus
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN2 MUTATED        1      0      1      0
  SPANXN2 WILD-TYPE     53     10     23     22
D817V12, multiclass
[1] "Remove cluster labels:" "SPANXN2 MUTATED"       
clus
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 

Clustering(818) Variable = RPS6KA3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA3 MUTATED        2      0      0      4
  RPS6KA3 WILD-TYPE     44     58     64     39
D818V1, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA3 MUTATED        3      1      2
  RPS6KA3 WILD-TYPE     48     82     75
D818V2, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA3 MUTATED       11      1      3      1
  RPS6KA3 WILD-TYPE    167    182     98     19
D818V3, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               1               182
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA3 MUTATED        2      1      7
  RPS6KA3 WILD-TYPE     85     79     93
D818V4, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA3 MUTATED        2      6      3
  RPS6KA3 WILD-TYPE     87    154    135
D818V5, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               6               154
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA3 MUTATED        3      7      1
  RPS6KA3 WILD-TYPE    179    126     71
D818V6, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               7               126
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA3 MUTATED        1      7      2      6
  RPS6KA3 WILD-TYPE    111     89     90    180
D818V7, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               7                89
  CLUS_3               2                90
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPS6KA3 MUTATED        2      2      4      1      1      0      6
  RPS6KA3 WILD-TYPE     58     48     45     39     62    125     93
D818V8, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA3 MUTATED        5      2      1      8
  RPS6KA3 WILD-TYPE    125     76     67    188
D818V9, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RPS6KA3 MUTATED        1      2      2      1      6      0      2      1
  RPS6KA3 WILD-TYPE     39     60     26     79     63     48     41     27
                   vv
clus                CLUS_9
  RPS6KA3 MUTATED        1
  RPS6KA3 WILD-TYPE     73
D818V10, multiclass
        clus
vv       RPS6KA3 MUTATED RPS6KA3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA3 MUTATED        1      0      0      1
  RPS6KA3 WILD-TYPE     32     31     27     18
D818V11, multiclass
[1] "Remove cluster labels:" "RPS6KA3 MUTATED"       
clus
  RPS6KA3 MUTATED RPS6KA3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-D5-5537 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA3 MUTATED        1      0      1      0
  RPS6KA3 WILD-TYPE     53     10     23     22
D818V12, multiclass
[1] "Remove cluster labels:" "RPS6KA3 MUTATED"       
clus
  RPS6KA3 MUTATED RPS6KA3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-D5-5537 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" "RPS6KA3 WILD-TYPE" 

Clustering(819) Variable = ICOSLG MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICOSLG MUTATED        0      0      0      0
  ICOSLG WILD-TYPE     46     58     64     43
D819V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ICOSLG MUTATED        0      0      0
  ICOSLG WILD-TYPE     51     83     77
D819V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICOSLG MUTATED        4      1      0      0
  ICOSLG WILD-TYPE    174    182    101     20
D819V3, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ICOSLG MUTATED        2      0      3
  ICOSLG WILD-TYPE     85     80     97
D819V4, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ICOSLG MUTATED        0      2      3
  ICOSLG WILD-TYPE     89    158    135
D819V5, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ICOSLG MUTATED        2      2      1
  ICOSLG WILD-TYPE    180    131     71
D819V6, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICOSLG MUTATED        0      3      2      0
  ICOSLG WILD-TYPE    112     93     90    186
D819V7, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ICOSLG MUTATED        0      1      3      1      0      0      0
  ICOSLG WILD-TYPE     60     49     46     39     63    125     99
D819V8, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICOSLG MUTATED        2      1      1      1
  ICOSLG WILD-TYPE    128     77     67    195
D819V9, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ICOSLG MUTATED        0      2      0      0      1      0      1      0
  ICOSLG WILD-TYPE     40     60     28     80     68     48     42     28
                  vv
clus               CLUS_9
  ICOSLG MUTATED        1
  ICOSLG WILD-TYPE     73
D819V10, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICOSLG MUTATED        1      0      0      2
  ICOSLG WILD-TYPE     32     31     27     17
D819V11, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICOSLG MUTATED        2      0      1      0
  ICOSLG WILD-TYPE     52     10     23     22
D819V12, multiclass
        clus
vv       ICOSLG MUTATED ICOSLG WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(820) Variable = PPIG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        2      0      1      3
  PPIG WILD-TYPE     44     58     63     40
D820V1, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        4      1      1
  PPIG WILD-TYPE     47     82     76
D820V2, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED       11      3      1      0
  PPIG WILD-TYPE    167    180    100     20
D820V3, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1           11            167
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        4      2      3
  PPIG WILD-TYPE     83     78     97
D820V4, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        0      7      5
  PPIG WILD-TYPE     89    153    133
D820V5, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            0             89
  CLUS_2            7            153
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        6      5      1
  PPIG WILD-TYPE    176    128     71
D820V6, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        2      6      2      5
  PPIG WILD-TYPE    110     90     90    181
D820V7, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPIG MUTATED        2      1      4      2      0      0      6
  PPIG WILD-TYPE     58     49     45     38     63    125     93
D820V8, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        4      1      3      5
  PPIG WILD-TYPE    126     77     65    191
D820V9, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            3             65
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PPIG MUTATED        0      1      2      0      3      2      2      2      1
  PPIG WILD-TYPE     40     61     26     80     66     46     41     26     73
D820V10, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        1      0      1      2
  PPIG WILD-TYPE     32     31     26     17
D820V11, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        1      0      2      1
  PPIG WILD-TYPE     53     10     22     21
D820V12, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(821) Variable = PTPRN MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRN MUTATED        1      1      0      3
  PTPRN WILD-TYPE     45     57     64     40
D821V1, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRN MUTATED        3      1      1
  PTPRN WILD-TYPE     48     82     76
D821V2, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRN MUTATED       15      2      0      0
  PTPRN WILD-TYPE    163    181    101     20
D821V3, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1            15             163
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRN MUTATED        6      1      4
  PTPRN WILD-TYPE     81     79     96
D821V4, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRN MUTATED        1      9      4
  PTPRN WILD-TYPE     88    151    134
D821V5, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRN MUTATED        5      9      0
  PTPRN WILD-TYPE    177    124     72
D821V6, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             5             177
  CLUS_2             9             124
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRN MUTATED        1      4      5      7
  PTPRN WILD-TYPE    111     92     87    179
D821V7, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRN MUTATED        1      2      5      0      2      1      6
  PTPRN WILD-TYPE     59     48     44     40     61    124     93
D821V8, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRN MUTATED        4      3      2      8
  PTPRN WILD-TYPE    126     75     66    188
D821V9, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRN MUTATED        0      3      1      0      8      1      2      0
  PTPRN WILD-TYPE     40     59     27     80     61     47     41     28
                 vv
clus              CLUS_9
  PTPRN MUTATED        2
  PTPRN WILD-TYPE     72
D821V10, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRN MUTATED        2      0      0      2
  PTPRN WILD-TYPE     31     31     27     17
D821V11, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRN MUTATED        3      0      1      0
  PTPRN WILD-TYPE     51     10     23     22
D821V12, multiclass
        clus
vv       PTPRN MUTATED PTPRN WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(822) Variable = THOC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC6 MUTATED        1      0      0      1
  THOC6 WILD-TYPE     45     58     64     42
D822V1, multiclass
[1] "Remove cluster labels:" "THOC6 MUTATED"         
clus
  THOC6 MUTATED THOC6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AY-4071 
"THOC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC6 MUTATED        1      1      0
  THOC6 WILD-TYPE     50     82     77
D822V2, multiclass
[1] "Remove cluster labels:" "THOC6 MUTATED"         
clus
  THOC6 MUTATED THOC6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AY-4071 
"THOC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC6 MUTATED        4      1      2      1
  THOC6 WILD-TYPE    174    182     99     19
D822V3, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC6 MUTATED        2      1      3
  THOC6 WILD-TYPE     85     79     97
D822V4, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC6 MUTATED        1      3      3
  THOC6 WILD-TYPE     88    157    135
D822V5, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THOC6 MUTATED        4      2      1
  THOC6 WILD-TYPE    178    131     71
D822V6, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC6 MUTATED        1      3      2      2
  THOC6 WILD-TYPE    111     93     90    184
D822V7, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THOC6 MUTATED        0      2      1      2      1      0      2
  THOC6 WILD-TYPE     60     48     48     38     62    125     97
D822V8, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC6 MUTATED        6      0      0      2
  THOC6 WILD-TYPE    124     78     68    194
D822V9, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  THOC6 MUTATED        2      0      3      0      2      0      1      0
  THOC6 WILD-TYPE     38     62     25     80     67     48     42     28
                 vv
clus              CLUS_9
  THOC6 MUTATED        0
  THOC6 WILD-TYPE     74
D822V10, multiclass
        clus
vv       THOC6 MUTATED THOC6 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC6 MUTATED        1      1      0      0
  THOC6 WILD-TYPE     32     30     27     19
D822V11, multiclass
[1] "Remove cluster labels:" "THOC6 MUTATED"         
clus
  THOC6 MUTATED THOC6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THOC6 MUTATED        2      0      0      0
  THOC6 WILD-TYPE     52     10     24     22
D822V12, multiclass
[1] "Remove cluster labels:" "THOC6 MUTATED"         
clus
  THOC6 MUTATED THOC6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" "THOC6 WILD-TYPE" 

Clustering(823) Variable = HNRNPH3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH3 MUTATED        0      0      1      0
  HNRNPH3 WILD-TYPE     46     58     63     43
D823V1, multiclass
[1] "Remove cluster labels:" "HNRNPH3 MUTATED"       
clus
  HNRNPH3 MUTATED HNRNPH3 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3966 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HNRNPH3 MUTATED        0      0      1
  HNRNPH3 WILD-TYPE     51     83     76
D823V2, multiclass
[1] "Remove cluster labels:" "HNRNPH3 MUTATED"       
clus
  HNRNPH3 MUTATED HNRNPH3 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3966 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH3 MUTATED        3      1      0      0
  HNRNPH3 WILD-TYPE    175    182    101     20
D823V3, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HNRNPH3 MUTATED        0      0      3
  HNRNPH3 WILD-TYPE     87     80     97
D823V4, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HNRNPH3 MUTATED        0      2      1
  HNRNPH3 WILD-TYPE     89    158    137
D823V5, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HNRNPH3 MUTATED        1      2      0
  HNRNPH3 WILD-TYPE    181    131     72
D823V6, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH3 MUTATED        0      3      0      1
  HNRNPH3 WILD-TYPE    112     93     92    185
D823V7, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNRNPH3 MUTATED        0      0      3      0      0      1      0
  HNRNPH3 WILD-TYPE     60     50     46     40     63    124     99
D823V8, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH3 MUTATED        3      0      0      1
  HNRNPH3 WILD-TYPE    127     78     68    195
D823V9, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HNRNPH3 MUTATED        0      1      0      0      2      0      0      1
  HNRNPH3 WILD-TYPE     40     61     28     80     67     48     43     27
                   vv
clus                CLUS_9
  HNRNPH3 MUTATED        0
  HNRNPH3 WILD-TYPE     74
D823V10, multiclass
        clus
vv       HNRNPH3 MUTATED HNRNPH3 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH3 MUTATED        0      0      0      1
  HNRNPH3 WILD-TYPE     33     31     27     18
D823V11, multiclass
[1] "Remove cluster labels:" "HNRNPH3 MUTATED"       
clus
  HNRNPH3 MUTATED HNRNPH3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-G5-6641 
"HNRNPH3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPH3 MUTATED        0      0      1      0
  HNRNPH3 WILD-TYPE     54     10     23     22
D823V12, multiclass
[1] "Remove cluster labels:" "HNRNPH3 MUTATED"       
clus
  HNRNPH3 MUTATED HNRNPH3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" "HNRNPH3 WILD-TYPE" 
       TCGA-G5-6641 
"HNRNPH3 WILD-TYPE" 

Clustering(824) Variable = FSHR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSHR MUTATED        2      0      1      5
  FSHR WILD-TYPE     44     58     63     38
D824V1, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FSHR MUTATED        4      3      1
  FSHR WILD-TYPE     47     80     76
D824V2, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            4             47
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSHR MUTATED       10      5      4      0
  FSHR WILD-TYPE    168    178     97     20
D824V3, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1           10            168
  CLUS_2            5            178
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FSHR MUTATED        8      1      2
  FSHR WILD-TYPE     79     79     98
D824V4, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            8             79
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FSHR MUTATED        3      4      9
  FSHR WILD-TYPE     86    156    129
D824V5, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            3             86
  CLUS_2            4            156
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FSHR MUTATED       10      4      2
  FSHR WILD-TYPE    172    129     70
D824V6, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1           10            172
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSHR MUTATED        3      4      4      8
  FSHR WILD-TYPE    109     92     88    178
D824V7, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            4             88
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FSHR MUTATED        2      2      1      2      5      2      5
  FSHR WILD-TYPE     58     48     48     38     58    123     94
D824V8, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            2             38
  CLUS_5            5             58
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSHR MUTATED        5      5      3      5
  FSHR WILD-TYPE    125     73     65    191
D824V9, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            5            125
  CLUS_2            5             73
  CLUS_3            3             65
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FSHR MUTATED        0      4      2      5      4      0      1      0      2
  FSHR WILD-TYPE     40     58     26     75     65     48     42     28     72
D824V10, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            5             75
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSHR MUTATED        1      4      0      0
  FSHR WILD-TYPE     32     27     27     19
D824V11, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            1             32
  CLUS_2            4             27
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSHR MUTATED        3      1      0      1
  FSHR WILD-TYPE     51      9     24     21
D824V12, multiclass
        clus
vv       FSHR MUTATED FSHR WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(825) Variable = HUWE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED        4      2      0      9
  HUWE1 WILD-TYPE     42     56     64     34
D825V1, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             9              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED        9      2      4
  HUWE1 WILD-TYPE     42     81     73
D825V2, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             2              81
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       28     11      8      0
  HUWE1 WILD-TYPE    150    172     93     20
D825V3, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            28             150
  CLUS_2            11             172
  CLUS_3             8              93
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       11      4     16
  HUWE1 WILD-TYPE     76     76     84
D825V4, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             4              76
  CLUS_3            16              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED        7     13     17
  HUWE1 WILD-TYPE     82    147    121
D825V5, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             7              82
  CLUS_2            13             147
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HUWE1 MUTATED       20     13      4
  HUWE1 WILD-TYPE    162    120     68
D825V6, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            20             162
  CLUS_2            13             120
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED        8     10     14     14
  HUWE1 WILD-TYPE    104     86     78    172
D825V7, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             8             104
  CLUS_2            10              86
  CLUS_3            14              78
  CLUS_4            14             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HUWE1 MUTATED        3      6     14      2      6      3     12
  HUWE1 WILD-TYPE     57     44     35     38     57    122     87
D825V8, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             6              44
  CLUS_3            14              35
  CLUS_4             2              38
  CLUS_5             6              57
  CLUS_6             3             122
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED       17      9      2     18
  HUWE1 WILD-TYPE    113     69     66    178
D825V9, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1            17             113
  CLUS_2             9              69
  CLUS_3             2              66
  CLUS_4            18             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HUWE1 MUTATED        4     10      3      7     15      1      0      3
  HUWE1 WILD-TYPE     36     52     25     73     54     47     43     25
                 vv
clus              CLUS_9
  HUWE1 MUTATED        3
  HUWE1 WILD-TYPE     71
D825V10, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2            10              52
  CLUS_3             3              25
  CLUS_4             7              73
  CLUS_5            15              54
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             3              25
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED        4      3      0      3
  HUWE1 WILD-TYPE     29     28     27     16
D825V11, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUWE1 MUTATED        6      1      2      1
  HUWE1 WILD-TYPE     48      9     22     21
D825V12, multiclass
        clus
vv       HUWE1 MUTATED HUWE1 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(826) Variable = EIF2B5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B5 MUTATED        1      1      0      3
  EIF2B5 WILD-TYPE     45     57     64     40
D826V1, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B5 MUTATED        3      2      0
  EIF2B5 WILD-TYPE     48     81     77
D826V2, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B5 MUTATED        9      4      1      2
  EIF2B5 WILD-TYPE    169    179    100     18
D826V3, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B5 MUTATED        4      3      4
  EIF2B5 WILD-TYPE     83     77     96
D826V4, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B5 MUTATED        2      7      6
  EIF2B5 WILD-TYPE     87    153    132
D826V5, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B5 MUTATED        6      7      2
  EIF2B5 WILD-TYPE    176    126     70
D826V6, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B5 MUTATED        3      8      1      4
  EIF2B5 WILD-TYPE    109     88     91    182
D826V7, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              8               88
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF2B5 MUTATED        3      2      2      3      1      1      4
  EIF2B5 WILD-TYPE     57     48     47     37     62    124     95
D826V8, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              3               37
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B5 MUTATED        9      0      1      6
  EIF2B5 WILD-TYPE    121     78     67    190
D826V9, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF2B5 MUTATED        3      1      1      2      4      0      4      0
  EIF2B5 WILD-TYPE     37     61     27     78     65     48     39     28
                  vv
clus               CLUS_9
  EIF2B5 MUTATED        1
  EIF2B5 WILD-TYPE     73
D826V10, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              4               39
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B5 MUTATED        0      1      0      2
  EIF2B5 WILD-TYPE     33     30     27     17
D826V11, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B5 MUTATED        2      0      1      0
  EIF2B5 WILD-TYPE     52     10     23     22
D826V12, multiclass
        clus
vv       EIF2B5 MUTATED EIF2B5 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(827) Variable = C14ORF118 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF118 MUTATED        1      1      0      2
  C14ORF118 WILD-TYPE     45     57     64     41
D827V1, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 1                  45
  CLUS_2                 1                  57
  CLUS_3                 0                  64
  CLUS_4                 2                  41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF118 MUTATED        0      3      1
  C14ORF118 WILD-TYPE     51     80     76
D827V2, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 0                  51
  CLUS_2                 3                  80
  CLUS_3                 1                  76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF118 MUTATED        5      5      0      0
  C14ORF118 WILD-TYPE    173    178    101     20
D827V3, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 5                 173
  CLUS_2                 5                 178
  CLUS_3                 0                 101
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF118 MUTATED        2      1      3
  C14ORF118 WILD-TYPE     85     79     97
D827V4, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 2                  85
  CLUS_2                 1                  79
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF118 MUTATED        1      4      4
  C14ORF118 WILD-TYPE     88    156    134
D827V5, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 1                  88
  CLUS_2                 4                 156
  CLUS_3                 4                 134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF118 MUTATED        5      4      0
  C14ORF118 WILD-TYPE    177    129     72
D827V6, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 5                 177
  CLUS_2                 4                 129
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF118 MUTATED        3      2      1      4
  C14ORF118 WILD-TYPE    109     94     91    182
D827V7, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 3                 109
  CLUS_2                 2                  94
  CLUS_3                 1                  91
  CLUS_4                 4                 182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF118 MUTATED        1      3      1      1      1      1      2
  C14ORF118 WILD-TYPE     59     47     48     39     62    124     97
D827V8, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 3                  47
  CLUS_3                 1                  48
  CLUS_4                 1                  39
  CLUS_5                 1                  62
  CLUS_6                 1                 124
  CLUS_7                 2                  97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF118 MUTATED        4      2      0      3
  C14ORF118 WILD-TYPE    126     76     68    193
D827V9, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 4                 126
  CLUS_2                 2                  76
  CLUS_3                 0                  68
  CLUS_4                 3                 193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF118 MUTATED        3      1      1      2      1      0      1      0
  C14ORF118 WILD-TYPE     37     61     27     78     68     48     42     28
                     vv
clus                  CLUS_9
  C14ORF118 MUTATED        0
  C14ORF118 WILD-TYPE     74
D827V10, multiclass
        clus
vv       C14ORF118 MUTATED C14ORF118 WILD-TYPE
  CLUS_1                 3                  37
  CLUS_2                 1                  61
  CLUS_3                 1                  27
  CLUS_4                 2                  78
  CLUS_5                 1                  68
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF118 MUTATED        0      0      1      0
  C14ORF118 WILD-TYPE     33     31     26     19
D827V11, multiclass
[1] "Remove cluster labels:" "C14ORF118 MUTATED"     
clus
  C14ORF118 MUTATED C14ORF118 WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6600 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AZ-6607          TCGA-CA-6718          TCGA-CA-6719 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-5916          TCGA-CK-6748 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-5860          TCGA-CM-6167 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CM-6674          TCGA-CM-6676          TCGA-CM-6677 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-6533          TCGA-D5-6534 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6922          TCGA-D5-6924 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6157 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6681          TCGA-DC-6682 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0XD          TCGA-DM-A0XF 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D7          TCGA-DM-A1D8 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1HA 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DM-A282          TCGA-DM-A285          TCGA-DY-A1DC 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF118 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF118 MUTATED        0      0      1      0
  C14ORF118 WILD-TYPE     54     10     23     22
D827V12, multiclass
[1] "Remove cluster labels:" "C14ORF118 MUTATED"     
clus
  C14ORF118 MUTATED C14ORF118 WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6600 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-AZ-6607          TCGA-CA-6718          TCGA-CA-6719 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-5916          TCGA-CK-6748 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-5860          TCGA-CM-6167 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CM-6674          TCGA-CM-6676          TCGA-CM-6677 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-6533          TCGA-D5-6534 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6922          TCGA-D5-6924 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6157 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6681          TCGA-DC-6682 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0XD          TCGA-DM-A0XF 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D7          TCGA-DM-A1D8 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1HA 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DM-A282          TCGA-DM-A285          TCGA-DY-A1DC 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" "C14ORF118 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF118 WILD-TYPE" 

Clustering(828) Variable = USP9X MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP9X MUTATED        4      0      0      4
  USP9X WILD-TYPE     42     58     64     39
D828V1, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP9X MUTATED        5      1      2
  USP9X WILD-TYPE     46     82     75
D828V2, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP9X MUTATED       24      5      2      1
  USP9X WILD-TYPE    154    178     99     19
D828V3, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1            24             154
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP9X MUTATED        5      7     13
  USP9X WILD-TYPE     82     73     87
D828V4, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             5              82
  CLUS_2             7              73
  CLUS_3            13              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP9X MUTATED        6      9     12
  USP9X WILD-TYPE     83    151    126
D828V5, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             6              83
  CLUS_2             9             151
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP9X MUTATED       12     10      5
  USP9X WILD-TYPE    170    123     67
D828V6, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1            12             170
  CLUS_2            10             123
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP9X MUTATED        7     11      6      9
  USP9X WILD-TYPE    105     85     86    177
D828V7, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             7             105
  CLUS_2            11              85
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP9X MUTATED        7      3     10      3      2      1      7
  USP9X WILD-TYPE     53     47     39     37     61    124     92
D828V8, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             7              53
  CLUS_2             3              47
  CLUS_3            10              39
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP9X MUTATED       18      2      1     11
  USP9X WILD-TYPE    112     76     67    185
D828V9, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1            18             112
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP9X MUTATED        5      4      3      3     11      1      2      0
  USP9X WILD-TYPE     35     58     25     77     58     47     41     28
                 vv
clus              CLUS_9
  USP9X MUTATED        3
  USP9X WILD-TYPE     71
D828V10, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             5              35
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5            11              58
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP9X MUTATED        1      0      0      4
  USP9X WILD-TYPE     32     31     27     15
D828V11, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP9X MUTATED        4      0      1      0
  USP9X WILD-TYPE     50     10     23     22
D828V12, multiclass
        clus
vv       USP9X MUTATED USP9X WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(829) Variable = SLC35A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A5 MUTATED        0      0      0      1
  SLC35A5 WILD-TYPE     46     58     64     42
D829V1, multiclass
[1] "Remove cluster labels:" "SLC35A5 MUTATED"       
clus
  SLC35A5 MUTATED SLC35A5 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A5 MUTATED        0      0      1
  SLC35A5 WILD-TYPE     51     83     76
D829V2, multiclass
[1] "Remove cluster labels:" "SLC35A5 MUTATED"       
clus
  SLC35A5 MUTATED SLC35A5 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A5 MUTATED        4      4      0      0
  SLC35A5 WILD-TYPE    174    179    101     20
D829V3, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A5 MUTATED        3      2      2
  SLC35A5 WILD-TYPE     84     78     98
D829V4, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A5 MUTATED        1      2      4
  SLC35A5 WILD-TYPE     88    158    134
D829V5, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A5 MUTATED        4      3      0
  SLC35A5 WILD-TYPE    178    130     72
D829V6, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A5 MUTATED        4      1      1      2
  SLC35A5 WILD-TYPE    108     95     91    184
D829V7, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC35A5 MUTATED        1      0      2      2      2      0      1
  SLC35A5 WILD-TYPE     59     50     47     38     61    125     98
D829V8, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A5 MUTATED        3      2      1      2
  SLC35A5 WILD-TYPE    127     76     67    194
D829V9, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC35A5 MUTATED        1      1      0      1      2      0      1      0
  SLC35A5 WILD-TYPE     39     61     28     79     67     48     42     28
                   vv
clus                CLUS_9
  SLC35A5 MUTATED        2
  SLC35A5 WILD-TYPE     72
D829V10, multiclass
        clus
vv       SLC35A5 MUTATED SLC35A5 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A5 MUTATED        0      1      0      1
  SLC35A5 WILD-TYPE     33     30     27     18
D829V11, multiclass
[1] "Remove cluster labels:" "SLC35A5 MUTATED"       
clus
  SLC35A5 MUTATED SLC35A5 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6306 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A5 MUTATED        1      1      0      0
  SLC35A5 WILD-TYPE     53      9     24     22
D829V12, multiclass
[1] "Remove cluster labels:" "SLC35A5 MUTATED"       
clus
  SLC35A5 MUTATED SLC35A5 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6306 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" "SLC35A5 WILD-TYPE" 

Clustering(830) Variable = FAS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAS MUTATED        0      0      1      1
  FAS WILD-TYPE     46     58     63     42
D830V1, multiclass
[1] "Remove cluster labels:" "FAS MUTATED"           
clus
  FAS MUTATED FAS WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3575    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3893 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FAS MUTATED        0      0      2
  FAS WILD-TYPE     51     83     75
D830V2, multiclass
[1] "Remove cluster labels:" "FAS MUTATED"           
clus
  FAS MUTATED FAS WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3575    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3893 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAS MUTATED        8      0      1      0
  FAS WILD-TYPE    170    183    100     20
D830V3, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           8           170
  CLUS_2           0           183
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FAS MUTATED        3      1      3
  FAS WILD-TYPE     84     79     97
D830V4, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           3            84
  CLUS_2           1            79
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FAS MUTATED        0      2      5
  FAS WILD-TYPE     89    158    133
D830V5, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           0            89
  CLUS_2           2           158
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FAS MUTATED        3      4      0
  FAS WILD-TYPE    179    129     72
D830V6, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           3           179
  CLUS_2           4           129
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAS MUTATED        1      4      2      2
  FAS WILD-TYPE    111     92     90    184
D830V7, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           1           111
  CLUS_2           4            92
  CLUS_3           2            90
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAS MUTATED        1      2      2      1      1      0      2
  FAS WILD-TYPE     59     48     47     39     62    125     97
D830V8, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           2            47
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAS MUTATED        3      1      0      5
  FAS WILD-TYPE    127     77     68    191
D830V9, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           3           127
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           5           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FAS MUTATED        1      2      1      2      1      0      0      0      2
  FAS WILD-TYPE     39     60     27     78     68     48     43     28     72
D830V10, multiclass
        clus
vv       FAS MUTATED FAS WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           1            27
  CLUS_4           2            78
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAS MUTATED        0      0      0      1
  FAS WILD-TYPE     33     31     27     18
D830V11, multiclass
[1] "Remove cluster labels:" "FAS MUTATED"           
clus
  FAS MUTATED FAS WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAS MUTATED        0      0      1      0
  FAS WILD-TYPE     54     10     23     22
D830V12, multiclass
[1] "Remove cluster labels:" "FAS MUTATED"           
clus
  FAS MUTATED FAS WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" "FAS WILD-TYPE" 

Clustering(831) Variable = PGM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM2 MUTATED        0      0      0      0
  PGM2 WILD-TYPE     46     58     64     43
D831V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM2 MUTATED        0      0      0
  PGM2 WILD-TYPE     51     83     77
D831V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM2 MUTATED        1      2      1      0
  PGM2 WILD-TYPE    177    181    100     20
D831V3, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            1            177
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM2 MUTATED        1      0      3
  PGM2 WILD-TYPE     86     80     97
D831V4, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM2 MUTATED        0      2      2
  PGM2 WILD-TYPE     89    158    136
D831V5, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM2 MUTATED        3      0      1
  PGM2 WILD-TYPE    179    133     71
D831V6, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM2 MUTATED        1      1      2      0
  PGM2 WILD-TYPE    111     95     90    186
D831V7, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PGM2 MUTATED        0      1      1      0      2      0      0
  PGM2 WILD-TYPE     60     49     48     40     61    125     99
D831V8, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM2 MUTATED        2      0      1      1
  PGM2 WILD-TYPE    128     78     67    195
D831V9, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PGM2 MUTATED        2      1      0      0      1      0      0      0      0
  PGM2 WILD-TYPE     38     61     28     80     68     48     43     28     74
D831V10, multiclass
        clus
vv       PGM2 MUTATED PGM2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM2 MUTATED        1      0      0      1
  PGM2 WILD-TYPE     32     31     27     18
D831V11, multiclass
[1] "Remove cluster labels:" "PGM2 MUTATED"          
clus
  PGM2 MUTATED PGM2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM2 MUTATED        1      0      1      0
  PGM2 WILD-TYPE     53     10     23     22
D831V12, multiclass
[1] "Remove cluster labels:" "PGM2 MUTATED"          
clus
  PGM2 MUTATED PGM2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" "PGM2 WILD-TYPE" 

Clustering(832) Variable = STX16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX16 MUTATED        2      0      1      0
  STX16 WILD-TYPE     44     58     63     43
D832V1, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STX16 MUTATED        2      1      0
  STX16 WILD-TYPE     49     82     77
D832V2, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX16 MUTATED        3      2      2      0
  STX16 WILD-TYPE    175    181     99     20
D832V3, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STX16 MUTATED        3      1      0
  STX16 WILD-TYPE     84     79    100
D832V4, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STX16 MUTATED        1      1      4
  STX16 WILD-TYPE     88    159    134
D832V5, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STX16 MUTATED        4      1      1
  STX16 WILD-TYPE    178    132     71
D832V6, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX16 MUTATED        1      0      3      3
  STX16 WILD-TYPE    111     96     89    183
D832V7, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              96
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STX16 MUTATED        1      1      0      0      2      1      2
  STX16 WILD-TYPE     59     49     49     40     61    124     97
D832V8, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX16 MUTATED        1      2      1      3
  STX16 WILD-TYPE    129     76     67    193
D832V9, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STX16 MUTATED        0      3      0      0      2      0      1      0
  STX16 WILD-TYPE     40     59     28     80     67     48     42     28
                 vv
clus              CLUS_9
  STX16 MUTATED        1
  STX16 WILD-TYPE     73
D832V10, multiclass
        clus
vv       STX16 MUTATED STX16 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX16 MUTATED        0      2      0      0
  STX16 WILD-TYPE     33     29     27     19
D832V11, multiclass
[1] "Remove cluster labels:" "STX16 MUTATED"         
clus
  STX16 MUTATED STX16 WILD-TYPE 
              2             108 
     TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F5-6464      TCGA-F5-6465 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX16 MUTATED        2      0      0      0
  STX16 WILD-TYPE     52     10     24     22
D832V12, multiclass
[1] "Remove cluster labels:" "STX16 MUTATED"         
clus
  STX16 MUTATED STX16 WILD-TYPE 
              2             108 
     TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F5-6464      TCGA-F5-6465 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" "STX16 WILD-TYPE" 

Clustering(833) Variable = TJP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP1 MUTATED        2      0      0      4
  TJP1 WILD-TYPE     44     58     64     39
D833V1, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TJP1 MUTATED        4      0      2
  TJP1 WILD-TYPE     47     83     75
D833V2, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP1 MUTATED       14      5      2      1
  TJP1 WILD-TYPE    164    178     99     19
D833V3, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            5            178
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TJP1 MUTATED        7      2      7
  TJP1 WILD-TYPE     80     78     93
D833V4, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            2             78
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TJP1 MUTATED        4      5      7
  TJP1 WILD-TYPE     85    155    131
D833V5, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TJP1 MUTATED        8      5      3
  TJP1 WILD-TYPE    174    128     69
D833V6, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP1 MUTATED        4      7      5      6
  TJP1 WILD-TYPE    108     89     87    180
D833V7, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            7             89
  CLUS_3            5             87
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TJP1 MUTATED        3      3      8      2      1      0      5
  TJP1 WILD-TYPE     57     47     41     38     62    125     94
D833V8, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            8             41
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP1 MUTATED        7      7      0      7
  TJP1 WILD-TYPE    123     71     68    189
D833V9, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            7             71
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TJP1 MUTATED        1      6      2      1      8      2      1      0      0
  TJP1 WILD-TYPE     39     56     26     79     61     46     42     28     74
D833V10, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            8             61
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP1 MUTATED        1      1      1      1
  TJP1 WILD-TYPE     32     30     26     18
D833V11, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP1 MUTATED        3      0      1      0
  TJP1 WILD-TYPE     51     10     23     22
D833V12, multiclass
        clus
vv       TJP1 MUTATED TJP1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(834) Variable = INTS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS3 MUTATED        1      0      0      2
  INTS3 WILD-TYPE     45     58     64     41
D834V1, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS3 MUTATED        3      0      0
  INTS3 WILD-TYPE     48     83     77
D834V2, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS3 MUTATED        5      1      1      1
  INTS3 WILD-TYPE    173    182    100     19
D834V3, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS3 MUTATED        1      2      2
  INTS3 WILD-TYPE     86     78     98
D834V4, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS3 MUTATED        1      2      4
  INTS3 WILD-TYPE     88    158    134
D834V5, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INTS3 MUTATED        4      2      1
  INTS3 WILD-TYPE    178    131     71
D834V6, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS3 MUTATED        3      3      0      2
  INTS3 WILD-TYPE    109     93     92    184
D834V7, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INTS3 MUTATED        3      0      1      1      0      0      3
  INTS3 WILD-TYPE     57     50     48     39     63    125     96
D834V8, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS3 MUTATED        3      1      1      3
  INTS3 WILD-TYPE    127     77     67    193
D834V9, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INTS3 MUTATED        0      0      1      0      4      1      2      0
  INTS3 WILD-TYPE     40     62     27     80     65     47     41     28
                 vv
clus              CLUS_9
  INTS3 MUTATED        0
  INTS3 WILD-TYPE     74
D834V10, multiclass
        clus
vv       INTS3 MUTATED INTS3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS3 MUTATED        1      0      0      0
  INTS3 WILD-TYPE     32     31     27     19
D834V11, multiclass
[1] "Remove cluster labels:" "INTS3 MUTATED"         
clus
  INTS3 MUTATED INTS3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6549 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-G5-6641 
"INTS3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS3 MUTATED        1      0      0      0
  INTS3 WILD-TYPE     53     10     24     22
D834V12, multiclass
[1] "Remove cluster labels:" "INTS3 MUTATED"         
clus
  INTS3 MUTATED INTS3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6549 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" "INTS3 WILD-TYPE" 
     TCGA-G5-6641 
"INTS3 WILD-TYPE" 

Clustering(835) Variable = DBN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBN1 MUTATED        1      0      0      1
  DBN1 WILD-TYPE     45     58     64     42
D835V1, multiclass
[1] "Remove cluster labels:" "DBN1 MUTATED"          
clus
  DBN1 MUTATED DBN1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AY-4071 
"DBN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DBN1 MUTATED        1      0      1
  DBN1 WILD-TYPE     50     83     76
D835V2, multiclass
[1] "Remove cluster labels:" "DBN1 MUTATED"          
clus
  DBN1 MUTATED DBN1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" "DBN1 WILD-TYPE" 
    TCGA-AY-4071 
"DBN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBN1 MUTATED        9      2      1      1
  DBN1 WILD-TYPE    169    181    100     19
D835V3, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DBN1 MUTATED        3      3      5
  DBN1 WILD-TYPE     84     77     95
D835V4, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            3             77
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DBN1 MUTATED        2      3      7
  DBN1 WILD-TYPE     87    157    131
D835V5, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DBN1 MUTATED        7      2      3
  DBN1 WILD-TYPE    175    131     69
D835V6, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBN1 MUTATED        3      5      3      2
  DBN1 WILD-TYPE    109     91     89    184
D835V7, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DBN1 MUTATED        2      1      4      3      2      0      1
  DBN1 WILD-TYPE     58     49     45     37     61    125     98
D835V8, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            3             37
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBN1 MUTATED        6      3      1      3
  DBN1 WILD-TYPE    124     75     67    193
D835V9, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DBN1 MUTATED        1      2      0      0      5      2      3      0      0
  DBN1 WILD-TYPE     39     60     28     80     64     46     40     28     74
D835V10, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            2             46
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBN1 MUTATED        0      2      1      3
  DBN1 WILD-TYPE     33     29     26     16
D835V11, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBN1 MUTATED        1      0      3      2
  DBN1 WILD-TYPE     53     10     21     20
D835V12, multiclass
        clus
vv       DBN1 MUTATED DBN1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(836) Variable = MCCC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCCC1 MUTATED        3      0      0      4
  MCCC1 WILD-TYPE     43     58     64     39
D836V1, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MCCC1 MUTATED        4      1      2
  MCCC1 WILD-TYPE     47     82     75
D836V2, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCCC1 MUTATED       14      3      2      0
  MCCC1 WILD-TYPE    164    180     99     20
D836V3, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MCCC1 MUTATED        3      6      2
  MCCC1 WILD-TYPE     84     74     98
D836V4, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             6              74
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MCCC1 MUTATED        1     11      4
  MCCC1 WILD-TYPE     88    149    134
D836V5, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2            11             149
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MCCC1 MUTATED        6      9      1
  MCCC1 WILD-TYPE    176    124     71
D836V6, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             9             124
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCCC1 MUTATED        6      5      0      8
  MCCC1 WILD-TYPE    106     91     92    178
D836V7, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             5              91
  CLUS_3             0              92
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MCCC1 MUTATED        5      5      2      0      0      0      7
  MCCC1 WILD-TYPE     55     45     47     40     63    125     92
D836V8, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             5              45
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCCC1 MUTATED        7      1      2      8
  MCCC1 WILD-TYPE    123     77     66    188
D836V9, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MCCC1 MUTATED        1      0      4      1      7      0      3      1
  MCCC1 WILD-TYPE     39     62     24     79     62     48     40     27
                 vv
clus              CLUS_9
  MCCC1 MUTATED        1
  MCCC1 WILD-TYPE     73
D836V10, multiclass
        clus
vv       MCCC1 MUTATED MCCC1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             4              24
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCCC1 MUTATED        0      0      0      1
  MCCC1 WILD-TYPE     33     31     27     18
D836V11, multiclass
[1] "Remove cluster labels:" "MCCC1 MUTATED"         
clus
  MCCC1 MUTATED MCCC1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-G5-6641 
"MCCC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCCC1 MUTATED        0      0      1      0
  MCCC1 WILD-TYPE     54     10     23     22
D836V12, multiclass
[1] "Remove cluster labels:" "MCCC1 MUTATED"         
clus
  MCCC1 MUTATED MCCC1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" "MCCC1 WILD-TYPE" 
     TCGA-G5-6641 
"MCCC1 WILD-TYPE" 

Clustering(837) Variable = ETF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETF1 MUTATED        2      0      0      2
  ETF1 WILD-TYPE     44     58     64     41
D837V1, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETF1 MUTATED        2      0      2
  ETF1 WILD-TYPE     49     83     75
D837V2, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETF1 MUTATED        8      2      2      0
  ETF1 WILD-TYPE    170    181     99     20
D837V3, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETF1 MUTATED        3      1      4
  ETF1 WILD-TYPE     84     79     96
D837V4, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETF1 MUTATED        1      4      4
  ETF1 WILD-TYPE     88    156    134
D837V5, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETF1 MUTATED        4      4      1
  ETF1 WILD-TYPE    178    129     71
D837V6, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETF1 MUTATED        2      3      3      4
  ETF1 WILD-TYPE    110     93     89    182
D837V7, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ETF1 MUTATED        2      0      3      0      4      0      3
  ETF1 WILD-TYPE     58     50     46     40     59    125     96
D837V8, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETF1 MUTATED        4      4      0      4
  ETF1 WILD-TYPE    126     74     68    192
D837V9, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ETF1 MUTATED        1      3      1      1      3      1      1      1      0
  ETF1 WILD-TYPE     39     59     27     79     66     47     42     27     74
D837V10, multiclass
        clus
vv       ETF1 MUTATED ETF1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETF1 MUTATED        0      2      0      0
  ETF1 WILD-TYPE     33     29     27     19
D837V11, multiclass
[1] "Remove cluster labels:" "ETF1 MUTATED"          
clus
  ETF1 MUTATED ETF1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F5-6464     TCGA-F5-6465 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETF1 MUTATED        2      0      0      0
  ETF1 WILD-TYPE     52     10     24     22
D837V12, multiclass
[1] "Remove cluster labels:" "ETF1 MUTATED"          
clus
  ETF1 MUTATED ETF1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F5-6464     TCGA-F5-6465 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" "ETF1 WILD-TYPE" 

Clustering(838) Variable = ALDOB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDOB MUTATED        3      0      0      2
  ALDOB WILD-TYPE     43     58     64     41
D838V1, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDOB MUTATED        5      0      0
  ALDOB WILD-TYPE     46     83     77
D838V2, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDOB MUTATED       14      0      1      0
  ALDOB WILD-TYPE    164    183    100     20
D838V3, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1            14             164
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDOB MUTATED        4      0      6
  ALDOB WILD-TYPE     83     80     94
D838V4, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDOB MUTATED        1      3      7
  ALDOB WILD-TYPE     88    157    131
D838V5, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDOB MUTATED        7      3      1
  ALDOB WILD-TYPE    175    130     71
D838V6, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDOB MUTATED        0      4      6      5
  ALDOB WILD-TYPE    112     92     86    181
D838V7, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             6              86
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALDOB MUTATED        1      3      5      0      1      0      5
  ALDOB WILD-TYPE     59     47     44     40     62    125     94
D838V8, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDOB MUTATED        6      4      0      4
  ALDOB WILD-TYPE    124     74     68    192
D838V9, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALDOB MUTATED        2      3      0      2      4      0      2      1
  ALDOB WILD-TYPE     38     59     28     78     65     48     41     27
                 vv
clus              CLUS_9
  ALDOB MUTATED        0
  ALDOB WILD-TYPE     74
D838V10, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDOB MUTATED        1      1      0      1
  ALDOB WILD-TYPE     32     30     27     18
D838V11, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDOB MUTATED        3      0      0      0
  ALDOB WILD-TYPE     51     10     24     22
D838V12, multiclass
        clus
vv       ALDOB MUTATED ALDOB WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(839) Variable = TFEC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFEC MUTATED        1      1      0      0
  TFEC WILD-TYPE     45     57     64     43
D839V1, multiclass
[1] "Remove cluster labels:" "TFEC MUTATED"          
clus
  TFEC MUTATED TFEC WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01Q 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AY-4071 
"TFEC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFEC MUTATED        1      1      0
  TFEC WILD-TYPE     50     82     77
D839V2, multiclass
[1] "Remove cluster labels:" "TFEC MUTATED"          
clus
  TFEC MUTATED TFEC WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01Q 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" "TFEC WILD-TYPE" 
    TCGA-AY-4071 
"TFEC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFEC MUTATED        9      2      1      0
  TFEC WILD-TYPE    169    181    100     20
D839V3, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFEC MUTATED        5      1      4
  TFEC WILD-TYPE     82     79     96
D839V4, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFEC MUTATED        1      4      6
  TFEC WILD-TYPE     88    156    132
D839V5, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFEC MUTATED        5      6      0
  TFEC WILD-TYPE    177    127     72
D839V6, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            5            177
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFEC MUTATED        0      7      2      3
  TFEC WILD-TYPE    112     89     90    183
D839V7, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            0            112
  CLUS_2            7             89
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TFEC MUTATED        0      2      2      3      1      0      4
  TFEC WILD-TYPE     60     48     47     37     62    125     95
D839V8, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFEC MUTATED        4      2      1      4
  TFEC WILD-TYPE    126     76     67    192
D839V9, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TFEC MUTATED        2      2      1      0      3      1      0      0      2
  TFEC WILD-TYPE     38     60     27     80     66     47     43     28     72
D839V10, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFEC MUTATED        0      0      2      1
  TFEC WILD-TYPE     33     31     25     18
D839V11, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFEC MUTATED        1      0      2      0
  TFEC WILD-TYPE     53     10     22     22
D839V12, multiclass
        clus
vv       TFEC MUTATED TFEC WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(840) Variable = NFATC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC3 MUTATED        0      1      1      1
  NFATC3 WILD-TYPE     46     57     63     42
D840V1, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFATC3 MUTATED        0      3      0
  NFATC3 WILD-TYPE     51     80     77
D840V2, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC3 MUTATED        7      4      2      1
  NFATC3 WILD-TYPE    171    179     99     19
D840V3, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFATC3 MUTATED        2      4      4
  NFATC3 WILD-TYPE     85     76     96
D840V4, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              4               76
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFATC3 MUTATED        3      5      5
  NFATC3 WILD-TYPE     86    155    133
D840V5, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFATC3 MUTATED        6      6      1
  NFATC3 WILD-TYPE    176    127     71
D840V6, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC3 MUTATED        6      2      2      4
  NFATC3 WILD-TYPE    106     94     90    182
D840V7, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFATC3 MUTATED        3      1      2      0      3      2      3
  NFATC3 WILD-TYPE     57     49     47     40     60    123     96
D840V8, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC3 MUTATED        3      4      1      6
  NFATC3 WILD-TYPE    127     74     67    190
D840V9, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NFATC3 MUTATED        1      4      3      0      3      1      0      0
  NFATC3 WILD-TYPE     39     58     25     80     66     47     43     28
                  vv
clus               CLUS_9
  NFATC3 MUTATED        2
  NFATC3 WILD-TYPE     72
D840V10, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              3               25
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC3 MUTATED        1      1      0      1
  NFATC3 WILD-TYPE     32     30     27     18
D840V11, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFATC3 MUTATED        1      1      1      0
  NFATC3 WILD-TYPE     53      9     23     22
D840V12, multiclass
        clus
vv       NFATC3 MUTATED NFATC3 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(841) Variable = ZNF83 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF83 MUTATED        2      1      0      6
  ZNF83 WILD-TYPE     44     57     64     37
D841V1, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF83 MUTATED        4      2      3
  ZNF83 WILD-TYPE     47     81     74
D841V2, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF83 MUTATED       14      2      3      0
  ZNF83 WILD-TYPE    164    181     98     20
D841V3, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF83 MUTATED        6      1      4
  ZNF83 WILD-TYPE     81     79     96
D841V4, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF83 MUTATED        4      6      7
  ZNF83 WILD-TYPE     85    154    131
D841V5, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             6             154
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF83 MUTATED        8      5      4
  ZNF83 WILD-TYPE    174    128     68
D841V6, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF83 MUTATED        1      5      4     10
  ZNF83 WILD-TYPE    111     91     88    176
D841V7, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF83 MUTATED        2      1      6      0      1      4      6
  ZNF83 WILD-TYPE     58     49     43     40     62    121     93
D841V8, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             4             121
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF83 MUTATED        3      3      0     13
  ZNF83 WILD-TYPE    127     75     68    183
D841V9, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF83 MUTATED        1      3      3      4      4      0      1      0
  ZNF83 WILD-TYPE     39     59     25     76     65     48     42     28
                 vv
clus              CLUS_9
  ZNF83 MUTATED        3
  ZNF83 WILD-TYPE     71
D841V10, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF83 MUTATED        2      0      0      1
  ZNF83 WILD-TYPE     31     31     27     18
D841V11, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF83 MUTATED        3      0      0      0
  ZNF83 WILD-TYPE     51     10     24     22
D841V12, multiclass
        clus
vv       ZNF83 MUTATED ZNF83 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(842) Variable = CDC27 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        2      0      0      6
  CDC27 WILD-TYPE     44     58     64     37
D842V1, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        3      2      3
  CDC27 WILD-TYPE     48     81     74
D842V2, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED       12      1      1      1
  CDC27 WILD-TYPE    166    182    100     19
D842V3, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        2      0      5
  CDC27 WILD-TYPE     85     80     95
D842V4, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        2      8      4
  CDC27 WILD-TYPE     87    152    134
D842V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        7      6      1
  CDC27 WILD-TYPE    175    127     71
D842V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        1      5      3      7
  CDC27 WILD-TYPE    111     91     89    179
D842V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC27 MUTATED        2      3      3      0      1      1      6
  CDC27 WILD-TYPE     58     47     46     40     62    124     93
D842V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        4      1      1      9
  CDC27 WILD-TYPE    126     77     67    187
D842V9, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDC27 MUTATED        2      1      3      2      3      0      2      1
  CDC27 WILD-TYPE     38     61     25     78     66     48     41     27
                 vv
clus              CLUS_9
  CDC27 MUTATED        1
  CDC27 WILD-TYPE     73
D842V10, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        0      0      1      1
  CDC27 WILD-TYPE     33     31     26     18
D842V11, multiclass
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AF-2687 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        1      0      1      0
  CDC27 WILD-TYPE     53     10     23     22
D842V12, multiclass
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AF-2687 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 

Clustering(843) Variable = PAAF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAAF1 MUTATED        0      0      0      0
  PAAF1 WILD-TYPE     46     58     64     43
D843V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAAF1 MUTATED        0      0      0
  PAAF1 WILD-TYPE     51     83     77
D843V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAAF1 MUTATED        3      3      0      0
  PAAF1 WILD-TYPE    175    180    101     20
D843V3, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAAF1 MUTATED        1      3      2
  PAAF1 WILD-TYPE     86     77     98
D843V4, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAAF1 MUTATED        0      4      2
  PAAF1 WILD-TYPE     89    156    136
D843V5, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAAF1 MUTATED        1      5      0
  PAAF1 WILD-TYPE    181    128     72
D843V6, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAAF1 MUTATED        3      2      0      1
  PAAF1 WILD-TYPE    109     94     92    185
D843V7, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAAF1 MUTATED        1      1      1      1      1      0      1
  PAAF1 WILD-TYPE     59     49     48     39     62    125     98
D843V8, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAAF1 MUTATED        2      1      1      2
  PAAF1 WILD-TYPE    128     77     67    194
D843V9, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PAAF1 MUTATED        0      1      0      0      2      2      0      0
  PAAF1 WILD-TYPE     40     61     28     80     67     46     43     28
                 vv
clus              CLUS_9
  PAAF1 MUTATED        1
  PAAF1 WILD-TYPE     73
D843V10, multiclass
        clus
vv       PAAF1 MUTATED PAAF1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAAF1 MUTATED        2      0      0      0
  PAAF1 WILD-TYPE     31     31     27     19
D843V11, multiclass
[1] "Remove cluster labels:" "PAAF1 MUTATED"         
clus
  PAAF1 MUTATED PAAF1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAAF1 MUTATED        1      0      0      1
  PAAF1 WILD-TYPE     53     10     24     21
D843V12, multiclass
[1] "Remove cluster labels:" "PAAF1 MUTATED"         
clus
  PAAF1 MUTATED PAAF1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" "PAAF1 WILD-TYPE" 

Clustering(844) Variable = CD244 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD244 MUTATED        0      0      0      3
  CD244 WILD-TYPE     46     58     64     40
D844V1, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD244 MUTATED        2      1      0
  CD244 WILD-TYPE     49     82     77
D844V2, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD244 MUTATED        4      1      2      0
  CD244 WILD-TYPE    174    182     99     20
D844V3, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD244 MUTATED        3      0      1
  CD244 WILD-TYPE     84     80     99
D844V4, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD244 MUTATED        1      3      3
  CD244 WILD-TYPE     88    157    135
D844V5, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD244 MUTATED        3      2      2
  CD244 WILD-TYPE    179    131     70
D844V6, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD244 MUTATED        1      1      1      4
  CD244 WILD-TYPE    111     95     91    182
D844V7, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD244 MUTATED        0      1      0      0      2      0      4
  CD244 WILD-TYPE     60     49     49     40     61    125     95
D844V8, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD244 MUTATED        0      2      1      3
  CD244 WILD-TYPE    130     76     67    193
D844V9, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CD244 MUTATED        0      1      1      0      1      1      1      0
  CD244 WILD-TYPE     40     61     27     80     68     47     42     28
                 vv
clus              CLUS_9
  CD244 MUTATED        1
  CD244 WILD-TYPE     73
D844V10, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD244 MUTATED        0      2      1      0
  CD244 WILD-TYPE     33     29     26     19
D844V11, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD244 MUTATED        1      0      1      1
  CD244 WILD-TYPE     53     10     23     21
D844V12, multiclass
        clus
vv       CD244 MUTATED CD244 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(845) Variable = UAP1L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UAP1L1 MUTATED        2      0      0      0
  UAP1L1 WILD-TYPE     44     58     64     43
D845V1, multiclass
[1] "Remove cluster labels:" "UAP1L1 MUTATED"        
clus
  UAP1L1 MUTATED UAP1L1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3939 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AY-4071 
"UAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UAP1L1 MUTATED        2      0      0
  UAP1L1 WILD-TYPE     49     83     77
D845V2, multiclass
[1] "Remove cluster labels:" "UAP1L1 MUTATED"        
clus
  UAP1L1 MUTATED UAP1L1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3939 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" "UAP1L1 WILD-TYPE" 
      TCGA-AY-4071 
"UAP1L1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UAP1L1 MUTATED        3      1      3      0
  UAP1L1 WILD-TYPE    175    182     98     20
D845V3, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UAP1L1 MUTATED        0      0      5
  UAP1L1 WILD-TYPE     87     80     95
D845V4, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UAP1L1 MUTATED        0      2      2
  UAP1L1 WILD-TYPE     89    158    136
D845V5, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UAP1L1 MUTATED        2      2      0
  UAP1L1 WILD-TYPE    180    131     72
D845V6, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UAP1L1 MUTATED        1      1      3      2
  UAP1L1 WILD-TYPE    111     95     89    184
D845V7, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UAP1L1 MUTATED        0      2      3      0      0      0      2
  UAP1L1 WILD-TYPE     60     48     46     40     63    125     97
D845V8, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UAP1L1 MUTATED        4      1      0      2
  UAP1L1 WILD-TYPE    126     77     68    194
D845V9, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UAP1L1 MUTATED        0      2      0      2      3      0      0      0
  UAP1L1 WILD-TYPE     40     60     28     78     66     48     43     28
                  vv
clus               CLUS_9
  UAP1L1 MUTATED        0
  UAP1L1 WILD-TYPE     74
D845V10, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UAP1L1 MUTATED        1      0      1      1
  UAP1L1 WILD-TYPE     32     31     26     18
D845V11, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UAP1L1 MUTATED        2      0      1      0
  UAP1L1 WILD-TYPE     52     10     23     22
D845V12, multiclass
        clus
vv       UAP1L1 MUTATED UAP1L1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(846) Variable = FAM189B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM189B MUTATED        2      0      0      1
  FAM189B WILD-TYPE     44     58     64     42
D846V1, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM189B MUTATED        3      0      0
  FAM189B WILD-TYPE     48     83     77
D846V2, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM189B MUTATED       10      1      1      1
  FAM189B WILD-TYPE    168    182    100     19
D846V3, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM189B MUTATED        3      1      6
  FAM189B WILD-TYPE     84     79     94
D846V4, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM189B MUTATED        2      4      5
  FAM189B WILD-TYPE     87    156    133
D846V5, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM189B MUTATED        6      5      0
  FAM189B WILD-TYPE    176    128     72
D846V6, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM189B MUTATED        1      4      5      3
  FAM189B WILD-TYPE    111     92     87    183
D846V7, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               5                87
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM189B MUTATED        1      0      7      0      1      0      4
  FAM189B WILD-TYPE     59     50     42     40     62    125     95
D846V8, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               7                42
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM189B MUTATED        5      3      1      3
  FAM189B WILD-TYPE    125     75     67    193
D846V9, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               5               125
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM189B MUTATED        1      3      0      0      6      0      1      1
  FAM189B WILD-TYPE     39     59     28     80     63     48     42     27
                   vv
clus                CLUS_9
  FAM189B MUTATED        0
  FAM189B WILD-TYPE     74
D846V10, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM189B MUTATED        1      1      0      1
  FAM189B WILD-TYPE     32     30     27     18
D846V11, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM189B MUTATED        2      0      1      0
  FAM189B WILD-TYPE     52     10     23     22
D846V12, multiclass
        clus
vv       FAM189B MUTATED FAM189B WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(847) Variable = MIA3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA3 MUTATED        3      0      2      4
  MIA3 WILD-TYPE     43     58     62     39
D847V1, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA3 MUTATED        3      3      3
  MIA3 WILD-TYPE     48     80     74
D847V2, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            3             80
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA3 MUTATED       17      2      1      1
  MIA3 WILD-TYPE    161    181    100     19
D847V3, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA3 MUTATED        5      1      6
  MIA3 WILD-TYPE     82     79     94
D847V4, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA3 MUTATED        1      7      7
  MIA3 WILD-TYPE     88    153    131
D847V5, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            7            153
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA3 MUTATED        7      6      2
  MIA3 WILD-TYPE    175    127     70
D847V6, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA3 MUTATED        1      8      3      9
  MIA3 WILD-TYPE    111     88     89    177
D847V7, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            8             88
  CLUS_3            3             89
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIA3 MUTATED        2      2      7      0      1      3      6
  MIA3 WILD-TYPE     58     48     42     40     62    122     93
D847V8, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            7             42
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            3            122
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA3 MUTATED        6      2      2     10
  MIA3 WILD-TYPE    124     76     66    186
D847V9, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MIA3 MUTATED        0      4      3      1      6      1      1      0      4
  MIA3 WILD-TYPE     40     58     25     79     63     47     42     28     70
D847V10, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA3 MUTATED        0      0      0      5
  MIA3 WILD-TYPE     33     31     27     14
D847V11, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA3 MUTATED        2      0      3      0
  MIA3 WILD-TYPE     52     10     21     22
D847V12, multiclass
        clus
vv       MIA3 MUTATED MIA3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(848) Variable = EFHC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC2 MUTATED        2      0      0      3
  EFHC2 WILD-TYPE     44     58     64     40
D848V1, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC2 MUTATED        3      0      2
  EFHC2 WILD-TYPE     48     83     75
D848V2, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC2 MUTATED       12      3      2      0
  EFHC2 WILD-TYPE    166    180     99     20
D848V3, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC2 MUTATED        4      3      5
  EFHC2 WILD-TYPE     83     77     95
D848V4, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC2 MUTATED        1      4      8
  EFHC2 WILD-TYPE     88    156    130
D848V5, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC2 MUTATED        7      4      2
  EFHC2 WILD-TYPE    175    129     70
D848V6, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC2 MUTATED        3      5      4      5
  EFHC2 WILD-TYPE    109     91     88    181
D848V7, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFHC2 MUTATED        3      3      5      0      2      0      4
  EFHC2 WILD-TYPE     57     47     44     40     61    125     95
D848V8, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC2 MUTATED        7      2      1      6
  EFHC2 WILD-TYPE    123     76     67    190
D848V9, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFHC2 MUTATED        3      4      2      0      4      1      0      1
  EFHC2 WILD-TYPE     37     58     26     80     65     47     43     27
                 vv
clus              CLUS_9
  EFHC2 MUTATED        1
  EFHC2 WILD-TYPE     73
D848V10, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC2 MUTATED        1      0      0      2
  EFHC2 WILD-TYPE     32     31     27     17
D848V11, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC2 MUTATED        3      0      0      0
  EFHC2 WILD-TYPE     51     10     24     22
D848V12, multiclass
        clus
vv       EFHC2 MUTATED EFHC2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(849) Variable = PALLD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALLD MUTATED        1      0      0      3
  PALLD WILD-TYPE     45     58     64     40
D849V1, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALLD MUTATED        1      0      3
  PALLD WILD-TYPE     50     83     74
D849V2, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALLD MUTATED        8      2      2      0
  PALLD WILD-TYPE    170    181     99     20
D849V3, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALLD MUTATED        3      2      3
  PALLD WILD-TYPE     84     78     97
D849V4, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALLD MUTATED        1      1      6
  PALLD WILD-TYPE     88    159    132
D849V5, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALLD MUTATED        7      1      0
  PALLD WILD-TYPE    175    132     72
D849V6, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             7             175
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALLD MUTATED        3      3      3      3
  PALLD WILD-TYPE    109     93     89    183
D849V7, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PALLD MUTATED        2      1      5      0      1      0      3
  PALLD WILD-TYPE     58     49     44     40     62    125     96
D849V8, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALLD MUTATED        4      2      0      6
  PALLD WILD-TYPE    126     76     68    190
D849V9, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PALLD MUTATED        0      2      2      1      5      1      0      1
  PALLD WILD-TYPE     40     60     26     79     64     47     43     27
                 vv
clus              CLUS_9
  PALLD MUTATED        0
  PALLD WILD-TYPE     74
D849V10, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALLD MUTATED        0      0      0      3
  PALLD WILD-TYPE     33     31     27     16
D849V11, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALLD MUTATED        1      0      1      1
  PALLD WILD-TYPE     53     10     23     21
D849V12, multiclass
        clus
vv       PALLD MUTATED PALLD WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(850) Variable = C1QL3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QL3 MUTATED        0      0      0      0
  C1QL3 WILD-TYPE     46     58     64     43
D850V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C1QL3 MUTATED        0      0      0
  C1QL3 WILD-TYPE     51     83     77
D850V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QL3 MUTATED        1      2      1      0
  C1QL3 WILD-TYPE    177    181    100     20
D850V3, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C1QL3 MUTATED        0      2      2
  C1QL3 WILD-TYPE     87     78     98
D850V4, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C1QL3 MUTATED        0      3      1
  C1QL3 WILD-TYPE     89    157    137
D850V5, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C1QL3 MUTATED        2      2      0
  C1QL3 WILD-TYPE    180    131     72
D850V6, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QL3 MUTATED        2      1      1      0
  C1QL3 WILD-TYPE    110     95     91    186
D850V7, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1QL3 MUTATED        2      0      1      0      1      0      0
  C1QL3 WILD-TYPE     58     50     48     40     62    125     99
D850V8, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QL3 MUTATED        2      2      0      0
  C1QL3 WILD-TYPE    128     76     68    196
D850V9, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1QL3 MUTATED        1      1      0      0      0      2      0      0
  C1QL3 WILD-TYPE     39     61     28     80     69     46     43     28
                 vv
clus              CLUS_9
  C1QL3 MUTATED        0
  C1QL3 WILD-TYPE     74
D850V10, multiclass
        clus
vv       C1QL3 MUTATED C1QL3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QL3 MUTATED        0      0      0      2
  C1QL3 WILD-TYPE     33     31     27     17
D850V11, multiclass
[1] "Remove cluster labels:" "C1QL3 MUTATED"         
clus
  C1QL3 MUTATED C1QL3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6141      TCGA-A6-6142 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QL3 MUTATED        1      0      0      1
  C1QL3 WILD-TYPE     53     10     24     21
D850V12, multiclass
[1] "Remove cluster labels:" "C1QL3 MUTATED"         
clus
  C1QL3 MUTATED C1QL3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6141      TCGA-A6-6142 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" "C1QL3 WILD-TYPE" 

Clustering(851) Variable = SFRS18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        3      0      0      2
  SFRS18 WILD-TYPE     43     58     64     41
D851V1, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS18 MUTATED        2      2      1
  SFRS18 WILD-TYPE     49     81     76
D851V2, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED       13      0      0      0
  SFRS18 WILD-TYPE    165    183    101     20
D851V3, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS18 MUTATED        2      0      6
  SFRS18 WILD-TYPE     85     80     94
D851V4, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS18 MUTATED        0      5      5
  SFRS18 WILD-TYPE     89    155    133
D851V5, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS18 MUTATED        3      6      1
  SFRS18 WILD-TYPE    179    127     71
D851V6, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        0      5      3      5
  SFRS18 WILD-TYPE    112     91     89    181
D851V7, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRS18 MUTATED        1      1      6      0      1      1      3
  SFRS18 WILD-TYPE     59     49     43     40     62    124     96
D851V8, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        5      2      0      5
  SFRS18 WILD-TYPE    125     76     68    191
D851V9, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SFRS18 MUTATED        0      3      1      1      6      0      0      0
  SFRS18 WILD-TYPE     40     59     27     79     63     48     43     28
                  vv
clus               CLUS_9
  SFRS18 MUTATED        1
  SFRS18 WILD-TYPE     73
D851V10, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        0      0      0      3
  SFRS18 WILD-TYPE     33     31     27     16
D851V11, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        1      0      2      0
  SFRS18 WILD-TYPE     53     10     22     22
D851V12, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(852) Variable = TAT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAT MUTATED        4      0      0      1
  TAT WILD-TYPE     42     58     64     42
D852V1, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           4            42
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TAT MUTATED        3      1      1
  TAT WILD-TYPE     48     82     76
D852V2, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           3            48
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAT MUTATED       14      0      1      0
  TAT WILD-TYPE    164    183    100     20
D852V3, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1          14           164
  CLUS_2           0           183
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TAT MUTATED        4      1      5
  TAT WILD-TYPE     83     79     95
D852V4, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           4            83
  CLUS_2           1            79
  CLUS_3           5            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TAT MUTATED        2      3      6
  TAT WILD-TYPE     87    157    132
D852V5, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           2            87
  CLUS_2           3           157
  CLUS_3           6           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TAT MUTATED        6      2      3
  TAT WILD-TYPE    176    131     69
D852V6, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           6           176
  CLUS_2           2           131
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAT MUTATED        1      5      4      5
  TAT WILD-TYPE    111     91     88    181
D852V7, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           1           111
  CLUS_2           5            91
  CLUS_3           4            88
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAT MUTATED        2      1      5      2      1      1      3
  TAT WILD-TYPE     58     49     44     38     62    124     96
D852V8, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           2            58
  CLUS_2           1            49
  CLUS_3           5            44
  CLUS_4           2            38
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAT MUTATED        6      3      0      5
  TAT WILD-TYPE    124     75     68    191
D852V9, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           6           124
  CLUS_2           3            75
  CLUS_3           0            68
  CLUS_4           5           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TAT MUTATED        2      3      1      2      5      1      0      0      0
  TAT WILD-TYPE     38     59     27     78     64     47     43     28     74
D852V10, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           2            38
  CLUS_2           3            59
  CLUS_3           1            27
  CLUS_4           2            78
  CLUS_5           5            64
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAT MUTATED        0      0      0      3
  TAT WILD-TYPE     33     31     27     16
D852V11, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAT MUTATED        2      0      1      0
  TAT WILD-TYPE     52     10     23     22
D852V12, multiclass
        clus
vv       TAT MUTATED TAT WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(853) Variable = LRRC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC6 MUTATED        0      0      0      1
  LRRC6 WILD-TYPE     46     58     64     42
D853V1, multiclass
[1] "Remove cluster labels:" "LRRC6 MUTATED"         
clus
  LRRC6 MUTATED LRRC6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRC6 MUTATED        0      0      1
  LRRC6 WILD-TYPE     51     83     76
D853V2, multiclass
[1] "Remove cluster labels:" "LRRC6 MUTATED"         
clus
  LRRC6 MUTATED LRRC6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"LRRC6 WILD-TYPE" "LRRC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC6 MUTATED        1      2      0      1
  LRRC6 WILD-TYPE    177    181    101     19
D853V3, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRC6 MUTATED        2      1      0
  LRRC6 WILD-TYPE     85     79    100
D853V4, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRC6 MUTATED        0      1      2
  LRRC6 WILD-TYPE     89    159    136
D853V5, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRC6 MUTATED        3      0      0
  LRRC6 WILD-TYPE    179    133     72
D853V6, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC6 MUTATED        1      0      2      1
  LRRC6 WILD-TYPE    111     96     90    185
D853V7, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              96
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRC6 MUTATED        1      0      0      0      2      0      1
  LRRC6 WILD-TYPE     59     50     49     40     61    125     98
D853V8, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC6 MUTATED        2      1      0      1
  LRRC6 WILD-TYPE    128     77     68    195
D853V9, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRC6 MUTATED        0      1      2      1      0      0      0      0
  LRRC6 WILD-TYPE     40     61     26     79     69     48     43     28
                 vv
clus              CLUS_9
  LRRC6 MUTATED        0
  LRRC6 WILD-TYPE     74
D853V10, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC6 MUTATED        1      2      0      0
  LRRC6 WILD-TYPE     32     29     27     19
D853V11, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC6 MUTATED        2      0      1      0
  LRRC6 WILD-TYPE     52     10     23     22
D853V12, multiclass
        clus
vv       LRRC6 MUTATED LRRC6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(854) Variable = ADAM18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM18 MUTATED        3      1      1      2
  ADAM18 WILD-TYPE     43     57     63     41
D854V1, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM18 MUTATED        3      3      1
  ADAM18 WILD-TYPE     48     80     76
D854V2, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM18 MUTATED       14      5      3      0
  ADAM18 WILD-TYPE    164    178     98     20
D854V3, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM18 MUTATED        5      5      6
  ADAM18 WILD-TYPE     82     75     94
D854V4, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              5               75
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM18 MUTATED        4     10      8
  ADAM18 WILD-TYPE     85    150    130
D854V5, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             10              150
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM18 MUTATED        9      9      4
  ADAM18 WILD-TYPE    173    124     68
D854V6, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              9              124
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM18 MUTATED        4      8      4      7
  ADAM18 WILD-TYPE    108     88     88    179
D854V7, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              8               88
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM18 MUTATED        4      2      4      2      4      2      5
  ADAM18 WILD-TYPE     56     48     45     38     59    123     94
D854V8, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              4               59
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM18 MUTATED        8      3      3      9
  ADAM18 WILD-TYPE    122     75     65    187
D854V9, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              3               75
  CLUS_3              3               65
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM18 MUTATED        1      3      4      3      9      0      1      0
  ADAM18 WILD-TYPE     39     59     24     77     60     48     42     28
                  vv
clus               CLUS_9
  ADAM18 MUTATED        2
  ADAM18 WILD-TYPE     72
D854V10, multiclass
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              4               24
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM18 MUTATED        0      0      1      1
  ADAM18 WILD-TYPE     33     31     26     18
D854V11, multiclass
[1] "Remove cluster labels:" "ADAM18 MUTATED"        
clus
  ADAM18 MUTATED ADAM18 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM18 MUTATED        0      0      2      0
  ADAM18 WILD-TYPE     54     10     22     22
D854V12, multiclass
[1] "Remove cluster labels:" "ADAM18 MUTATED"        
clus
  ADAM18 MUTATED ADAM18 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 

Clustering(855) Variable = MRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRAS MUTATED        1      0      0      0
  MRAS WILD-TYPE     45     58     64     43
D855V1, multiclass
[1] "Remove cluster labels:" "MRAS MUTATED"          
clus
  MRAS MUTATED MRAS WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MRAS MUTATED        1      0      0
  MRAS WILD-TYPE     50     83     77
D855V2, multiclass
[1] "Remove cluster labels:" "MRAS MUTATED"          
clus
  MRAS MUTATED MRAS WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" "MRAS WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MRAS WILD-TYPE" "MRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRAS MUTATED        3      0      1      0
  MRAS WILD-TYPE    175    183    100     20
D855V3, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MRAS MUTATED        1      1      1
  MRAS WILD-TYPE     86     79     99
D855V4, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MRAS MUTATED        0      3      1
  MRAS WILD-TYPE     89    157    137
D855V5, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MRAS MUTATED        1      1      2
  MRAS WILD-TYPE    181    132     70
D855V6, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            1            181
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRAS MUTATED        2      1      0      1
  MRAS WILD-TYPE    110     95     92    185
D855V7, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            0             92
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRAS MUTATED        1      0      1      0      1      0      1
  MRAS WILD-TYPE     59     50     48     40     62    125     98
D855V8, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRAS MUTATED        3      0      0      1
  MRAS WILD-TYPE    127     78     68    195
D855V9, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MRAS MUTATED        1      0      0      0      2      1      0      0      0
  MRAS WILD-TYPE     39     62     28     80     67     47     43     28     74
D855V10, multiclass
        clus
vv       MRAS MUTATED MRAS WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRAS MUTATED        0      0      0      0
  MRAS WILD-TYPE     33     31     27     19
D855V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRAS MUTATED        0      0      0      0
  MRAS WILD-TYPE     54     10     24     22
D855V12, multiclass

Clustering(856) Variable = ADNP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        1      0      0      3
  ADNP2 WILD-TYPE     45     58     64     40
D856V1, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED        2      0      2
  ADNP2 WILD-TYPE     49     83     75
D856V2, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED       13      3      1      0
  ADNP2 WILD-TYPE    165    180    100     20
D856V3, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED        3      0      9
  ADNP2 WILD-TYPE     84     80     91
D856V4, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED        2      9      4
  ADNP2 WILD-TYPE     87    151    134
D856V5, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED        6      7      2
  ADNP2 WILD-TYPE    176    126     70
D856V6, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        0      9      2      6
  ADNP2 WILD-TYPE    112     87     90    180
D856V7, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             9              87
  CLUS_3             2              90
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADNP2 MUTATED        1      5      5      1      0      0      5
  ADNP2 WILD-TYPE     59     45     44     39     63    125     94
D856V8, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             5              45
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        8      2      1      5
  ADNP2 WILD-TYPE    122     76     67    191
D856V9, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADNP2 MUTATED        5      0      2      0      4      0      3      0
  ADNP2 WILD-TYPE     35     62     26     80     65     48     40     28
                 vv
clus              CLUS_9
  ADNP2 MUTATED        2
  ADNP2 WILD-TYPE     72
D856V10, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        1      0      0      2
  ADNP2 WILD-TYPE     32     31     27     17
D856V11, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        3      0      0      0
  ADNP2 WILD-TYPE     51     10     24     22
D856V12, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(857) Variable = SLC22A16 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        2      0      0      2
  SLC22A16 WILD-TYPE     44     58     64     41
D857V1, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        1      1      2
  SLC22A16 WILD-TYPE     50     82     75
D857V2, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED       14      1      0      0
  SLC22A16 WILD-TYPE    164    182    101     20
D857V3, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                1                182
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        4      0      6
  SLC22A16 WILD-TYPE     83     80     94
D857V4, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                0                 80
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        2      3      6
  SLC22A16 WILD-TYPE     87    157    132
D857V5, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                3                157
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        5      5      1
  SLC22A16 WILD-TYPE    177    128     71
D857V6, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                5                128
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        0      6      4      5
  SLC22A16 WILD-TYPE    112     90     88    181
D857V7, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                6                 90
  CLUS_3                4                 88
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC22A16 MUTATED        1      0      9      0      0      2      3
  SLC22A16 WILD-TYPE     59     50     40     40     63    123     96
D857V8, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                9                 40
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        4      3      1      6
  SLC22A16 WILD-TYPE    126     75     67    190
D857V9, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC22A16 MUTATED        1      3      1      2      6      0      0      0
  SLC22A16 WILD-TYPE     39     59     27     78     63     48     43     28
                    vv
clus                 CLUS_9
  SLC22A16 MUTATED        1
  SLC22A16 WILD-TYPE     73
D857V10, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        2      0      0      1
  SLC22A16 WILD-TYPE     31     31     27     18
D857V11, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        3      0      0      0
  SLC22A16 WILD-TYPE     51     10     24     22
D857V12, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(858) Variable = GSS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSS MUTATED        1      0      0      2
  GSS WILD-TYPE     45     58     64     41
D858V1, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSS MUTATED        2      1      0
  GSS WILD-TYPE     49     82     77
D858V2, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSS MUTATED        6      1      1      1
  GSS WILD-TYPE    172    182    100     19
D858V3, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           6           172
  CLUS_2           1           182
  CLUS_3           1           100
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSS MUTATED        3      0      2
  GSS WILD-TYPE     84     80     98
D858V4, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           3            84
  CLUS_2           0            80
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSS MUTATED        1      2      4
  GSS WILD-TYPE     88    158    134
D858V5, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           1            88
  CLUS_2           2           158
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GSS MUTATED        3      4      0
  GSS WILD-TYPE    179    129     72
D858V6, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           3           179
  CLUS_2           4           129
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSS MUTATED        1      3      1      4
  GSS WILD-TYPE    111     93     91    182
D858V7, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           1           111
  CLUS_2           3            93
  CLUS_3           1            91
  CLUS_4           4           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSS MUTATED        1      0      2      2      0      0      4
  GSS WILD-TYPE     59     50     47     38     63    125     95
D858V8, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           2            47
  CLUS_4           2            38
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSS MUTATED        4      1      0      2
  GSS WILD-TYPE    126     77     68    194
D858V9, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           4           126
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GSS MUTATED        1      1      1      1      2      1      0      0      0
  GSS WILD-TYPE     39     61     27     79     67     47     43     28     74
D858V10, multiclass
        clus
vv       GSS MUTATED GSS WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           1            79
  CLUS_5           2            67
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSS MUTATED        1      0      1      0
  GSS WILD-TYPE     32     31     26     19
D858V11, multiclass
[1] "Remove cluster labels:" "GSS MUTATED"           
clus
  GSS MUTATED GSS WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6607    TCGA-CA-6718 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624    TCGA-CK-5916 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167    TCGA-CM-6674 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSS MUTATED        1      0      0      1
  GSS WILD-TYPE     53     10     24     21
D858V12, multiclass
[1] "Remove cluster labels:" "GSS MUTATED"           
clus
  GSS MUTATED GSS WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6607    TCGA-CA-6718 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624    TCGA-CK-5916 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167    TCGA-CM-6674 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"GSS WILD-TYPE" "GSS WILD-TYPE" "GSS WILD-TYPE" 

Clustering(859) Variable = IGF2R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2R MUTATED        7      0      1      6
  IGF2R WILD-TYPE     39     58     63     37
D859V1, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             7              39
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGF2R MUTATED        9      3      2
  IGF2R WILD-TYPE     42     80     75
D859V2, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             9              42
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2R MUTATED       32      1      8      0
  IGF2R WILD-TYPE    146    182     93     20
D859V3, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1            32             146
  CLUS_2             1             182
  CLUS_3             8              93
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGF2R MUTATED        8      2     17
  IGF2R WILD-TYPE     79     78     83
D859V4, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3            17              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGF2R MUTATED        3     11     17
  IGF2R WILD-TYPE     86    149    121
D859V5, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             3              86
  CLUS_2            11             149
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGF2R MUTATED       14     11      6
  IGF2R WILD-TYPE    168    122     66
D859V6, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1            14             168
  CLUS_2            11             122
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2R MUTATED        3     14     10     14
  IGF2R WILD-TYPE    109     82     82    172
D859V7, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             3             109
  CLUS_2            14              82
  CLUS_3            10              82
  CLUS_4            14             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGF2R MUTATED        4      4     15      1      1      2     14
  IGF2R WILD-TYPE     56     46     34     39     62    123     85
D859V8, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             4              56
  CLUS_2             4              46
  CLUS_3            15              34
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7            14              85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2R MUTATED        9      8      2     20
  IGF2R WILD-TYPE    121     70     66    176
D859V9, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             9             121
  CLUS_2             8              70
  CLUS_3             2              66
  CLUS_4            20             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IGF2R MUTATED        0      7      4      6     17      0      2      1
  IGF2R WILD-TYPE     40     55     24     74     52     48     41     27
                 vv
clus              CLUS_9
  IGF2R MUTATED        2
  IGF2R WILD-TYPE     72
D859V10, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             0              40
  CLUS_2             7              55
  CLUS_3             4              24
  CLUS_4             6              74
  CLUS_5            17              52
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2R MUTATED        1      1      1      4
  IGF2R WILD-TYPE     32     30     26     15
D859V11, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2R MUTATED        3      0      3      1
  IGF2R WILD-TYPE     51     10     21     21
D859V12, multiclass
        clus
vv       IGF2R MUTATED IGF2R WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(860) Variable = OR51A4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A4 MUTATED        1      0      0      2
  OR51A4 WILD-TYPE     45     58     64     41
D860V1, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A4 MUTATED        2      1      0
  OR51A4 WILD-TYPE     49     82     77
D860V2, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A4 MUTATED        6      2      0      0
  OR51A4 WILD-TYPE    172    181    101     20
D860V3, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A4 MUTATED        1      0      4
  OR51A4 WILD-TYPE     86     80     96
D860V4, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A4 MUTATED        1      3      2
  OR51A4 WILD-TYPE     88    157    136
D860V5, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A4 MUTATED        2      3      1
  OR51A4 WILD-TYPE    180    130     71
D860V6, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A4 MUTATED        0      1      4      3
  OR51A4 WILD-TYPE    112     95     88    183
D860V7, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR51A4 MUTATED        0      1      3      0      1      1      2
  OR51A4 WILD-TYPE     60     49     46     40     62    124     97
D860V8, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A4 MUTATED        2      2      0      4
  OR51A4 WILD-TYPE    128     76     68    192
D860V9, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR51A4 MUTATED        1      2      0      1      4      0      0      0
  OR51A4 WILD-TYPE     39     60     28     79     65     48     43     28
                  vv
clus               CLUS_9
  OR51A4 MUTATED        0
  OR51A4 WILD-TYPE     74
D860V10, multiclass
        clus
vv       OR51A4 MUTATED OR51A4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A4 MUTATED        1      0      0      0
  OR51A4 WILD-TYPE     32     31     27     19
D860V11, multiclass
[1] "Remove cluster labels:" "OR51A4 MUTATED"        
clus
  OR51A4 MUTATED OR51A4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-G5-6641 
"OR51A4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A4 MUTATED        1      0      0      0
  OR51A4 WILD-TYPE     53     10     24     22
D860V12, multiclass
[1] "Remove cluster labels:" "OR51A4 MUTATED"        
clus
  OR51A4 MUTATED OR51A4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" "OR51A4 WILD-TYPE" 
      TCGA-G5-6641 
"OR51A4 WILD-TYPE" 

Clustering(861) Variable = CRYGA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        0      0      0      0
  CRYGA WILD-TYPE     46     58     64     43
D861V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        0      0      0
  CRYGA WILD-TYPE     51     83     77
D861V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        5      0      0      0
  CRYGA WILD-TYPE    173    183    101     20
D861V3, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        0      0      5
  CRYGA WILD-TYPE     87     80     95
D861V4, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        0      1      4
  CRYGA WILD-TYPE     89    159    134
D861V5, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        3      2      0
  CRYGA WILD-TYPE    179    131     72
D861V6, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        0      5      0      0
  CRYGA WILD-TYPE    112     91     92    186
D861V7, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             0              92
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CRYGA MUTATED        0      1      4      0      0      0      0
  CRYGA WILD-TYPE     60     49     45     40     63    125     99
D861V8, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        2      0      0      3
  CRYGA WILD-TYPE    128     78     68    193
D861V9, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CRYGA MUTATED        0      0      0      1      3      0      1      0
  CRYGA WILD-TYPE     40     62     28     79     66     48     42     28
                 vv
clus              CLUS_9
  CRYGA MUTATED        0
  CRYGA WILD-TYPE     74
D861V10, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        0      0      0      2
  CRYGA WILD-TYPE     33     31     27     17
D861V11, multiclass
[1] "Remove cluster labels:" "CRYGA MUTATED"         
clus
  CRYGA MUTATED CRYGA WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        0      0      2      0
  CRYGA WILD-TYPE     54     10     22     22
D861V12, multiclass
[1] "Remove cluster labels:" "CRYGA MUTATED"         
clus
  CRYGA MUTATED CRYGA WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 

Clustering(862) Variable = RNF10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF10 MUTATED        3      0      0      3
  RNF10 WILD-TYPE     43     58     64     40
D862V1, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF10 MUTATED        4      0      2
  RNF10 WILD-TYPE     47     83     75
D862V2, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF10 MUTATED       10      0      3      1
  RNF10 WILD-TYPE    168    183     98     19
D862V3, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF10 MUTATED        4      0      5
  RNF10 WILD-TYPE     83     80     95
D862V4, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF10 MUTATED        2      4      8
  RNF10 WILD-TYPE     87    156    130
D862V5, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF10 MUTATED        4      8      2
  RNF10 WILD-TYPE    178    125     70
D862V6, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             8             125
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF10 MUTATED        2      3      3      7
  RNF10 WILD-TYPE    110     93     89    179
D862V7, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF10 MUTATED        2      2      2      1      2      0      6
  RNF10 WILD-TYPE     58     48     47     39     61    125     93
D862V8, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF10 MUTATED        4      1      1      9
  RNF10 WILD-TYPE    126     77     67    187
D862V9, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF10 MUTATED        1      1      1      1      6      2      1      0
  RNF10 WILD-TYPE     39     61     27     79     63     46     42     28
                 vv
clus              CLUS_9
  RNF10 MUTATED        2
  RNF10 WILD-TYPE     72
D862V10, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF10 MUTATED        2      0      1      0
  RNF10 WILD-TYPE     31     31     26     19
D862V11, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF10 MUTATED        0      0      1      2
  RNF10 WILD-TYPE     54     10     23     20
D862V12, multiclass
        clus
vv       RNF10 MUTATED RNF10 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(863) Variable = NCAPD3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        4      0      0      2
  NCAPD3 WILD-TYPE     42     58     64     41
D863V1, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD3 MUTATED        4      1      1
  NCAPD3 WILD-TYPE     47     82     76
D863V2, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED       18      4      4      0
  NCAPD3 WILD-TYPE    160    179     97     20
D863V3, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              4              179
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD3 MUTATED        7      3     11
  NCAPD3 WILD-TYPE     80     77     89
D863V4, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              3               77
  CLUS_3             11               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD3 MUTATED        4     11      9
  NCAPD3 WILD-TYPE     85    149    129
D863V5, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             11              149
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD3 MUTATED        9     11      4
  NCAPD3 WILD-TYPE    173    122     68
D863V6, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              9              173
  CLUS_2             11              122
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        6      9      4      7
  NCAPD3 WILD-TYPE    106     87     88    179
D863V7, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              9               87
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCAPD3 MUTATED        3      4      8      1      3      1      6
  NCAPD3 WILD-TYPE     57     46     41     39     60    124     93
D863V8, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              4               46
  CLUS_3              8               41
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED       14      4      1      7
  NCAPD3 WILD-TYPE    116     74     67    189
D863V9, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NCAPD3 MUTATED        4      4      2      4      5      1      3      1
  NCAPD3 WILD-TYPE     36     58     26     76     64     47     40     27
                  vv
clus               CLUS_9
  NCAPD3 MUTATED        2
  NCAPD3 WILD-TYPE     72
D863V10, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              4               76
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        1      0      2      3
  NCAPD3 WILD-TYPE     32     31     25     16
D863V11, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        3      0      2      1
  NCAPD3 WILD-TYPE     51     10     22     21
D863V12, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(864) Variable = MTTP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTTP MUTATED        5      1      1      2
  MTTP WILD-TYPE     41     57     63     41
D864V1, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTTP MUTATED        5      2      2
  MTTP WILD-TYPE     46     81     75
D864V2, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            5             46
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTTP MUTATED       18      5      2      2
  MTTP WILD-TYPE    160    178     99     18
D864V3, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1           18            160
  CLUS_2            5            178
  CLUS_3            2             99
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTTP MUTATED        6      4      8
  MTTP WILD-TYPE     81     76     92
D864V4, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            6             81
  CLUS_2            4             76
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTTP MUTATED        3      5     14
  MTTP WILD-TYPE     86    155    124
D864V5, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            155
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTTP MUTATED       16      4      2
  MTTP WILD-TYPE    166    129     70
D864V6, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1           16            166
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTTP MUTATED        5      8      6      9
  MTTP WILD-TYPE    107     88     86    177
D864V7, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            5            107
  CLUS_2            8             88
  CLUS_3            6             86
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTTP MUTATED        3      1      8      1      5      3      7
  MTTP WILD-TYPE     57     49     41     39     58    122     92
D864V8, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            5             58
  CLUS_6            3            122
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTTP MUTATED        6      5      2     13
  MTTP WILD-TYPE    124     73     66    183
D864V9, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            6            124
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTTP MUTATED        2      6      0      3     10      1      4      0      0
  MTTP WILD-TYPE     38     56     28     77     59     47     39     28     74
D864V10, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5           10             59
  CLUS_6            1             47
  CLUS_7            4             39
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTTP MUTATED        1      4      1      2
  MTTP WILD-TYPE     32     27     26     17
D864V11, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            1             32
  CLUS_2            4             27
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTTP MUTATED        5      1      1      1
  MTTP WILD-TYPE     49      9     23     21
D864V12, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(865) Variable = HEPH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPH MUTATED        0      0      0      3
  HEPH WILD-TYPE     46     58     64     40
D865V1, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HEPH MUTATED        1      0      2
  HEPH WILD-TYPE     50     83     75
D865V2, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPH MUTATED       11      5      3      0
  HEPH WILD-TYPE    167    178     98     20
D865V3, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1           11            167
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HEPH MUTATED        4      2     10
  HEPH WILD-TYPE     83     78     90
D865V4, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HEPH MUTATED        2      5      8
  HEPH WILD-TYPE     87    155    130
D865V5, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HEPH MUTATED        9      5      1
  HEPH WILD-TYPE    173    128     71
D865V6, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            9            173
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPH MUTATED        5      9      2      3
  HEPH WILD-TYPE    107     87     90    183
D865V7, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            5            107
  CLUS_2            9             87
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HEPH MUTATED        5      3      5      1      3      0      2
  HEPH WILD-TYPE     55     47     44     39     60    125     97
D865V8, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            5             55
  CLUS_2            3             47
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPH MUTATED       12      1      2      3
  HEPH WILD-TYPE    118     77     66    193
D865V9, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1           12            118
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HEPH MUTATED        2      3      2      4      4      0      2      0      1
  HEPH WILD-TYPE     38     59     26     76     65     48     41     28     73
D865V10, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPH MUTATED        1      1      1      0
  HEPH WILD-TYPE     32     30     26     19
D865V11, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPH MUTATED        1      0      0      2
  HEPH WILD-TYPE     53     10     24     20
D865V12, multiclass
        clus
vv       HEPH MUTATED HEPH WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(866) Variable = MAP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2 MUTATED        4      1      2      8
  MAP2 WILD-TYPE     42     57     62     35
D866V1, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            8             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP2 MUTATED        8      3      4
  MAP2 WILD-TYPE     43     80     73
D866V2, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            8             43
  CLUS_2            3             80
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2 MUTATED       30      6      6      0
  MAP2 WILD-TYPE    148    177     95     20
D866V3, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1           30            148
  CLUS_2            6            177
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP2 MUTATED       12      5     10
  MAP2 WILD-TYPE     75     75     90
D866V4, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1           12             75
  CLUS_2            5             75
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP2 MUTATED       10      9     15
  MAP2 WILD-TYPE     79    151    123
D866V5, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1           10             79
  CLUS_2            9            151
  CLUS_3           15            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP2 MUTATED       21      8      5
  MAP2 WILD-TYPE    161    125     67
D866V6, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1           21            161
  CLUS_2            8            125
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2 MUTATED        5     12     10     16
  MAP2 WILD-TYPE    107     84     82    170
D866V7, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            5            107
  CLUS_2           12             84
  CLUS_3           10             82
  CLUS_4           16            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP2 MUTATED        4      3     11      3      5      4     13
  MAP2 WILD-TYPE     56     47     38     37     58    121     86
D866V8, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            3             47
  CLUS_3           11             38
  CLUS_4            3             37
  CLUS_5            5             58
  CLUS_6            4            121
  CLUS_7           13             86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2 MUTATED       11      9      7     15
  MAP2 WILD-TYPE    119     69     61    181
D866V9, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            9             69
  CLUS_3            7             61
  CLUS_4           15            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MAP2 MUTATED        2      8      3      9      8      1      3      3      5
  MAP2 WILD-TYPE     38     54     25     71     61     47     40     25     69
D866V10, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            8             54
  CLUS_3            3             25
  CLUS_4            9             71
  CLUS_5            8             61
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            3             25
  CLUS_9            5             69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2 MUTATED        3      2      5      4
  MAP2 WILD-TYPE     30     29     22     15
D866V11, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            5             22
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2 MUTATED        8      1      4      1
  MAP2 WILD-TYPE     46      9     20     21
D866V12, multiclass
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  CLUS_1            8             46
  CLUS_2            1              9
  CLUS_3            4             20
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(867) Variable = NOD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOD2 MUTATED        1      0      0      2
  NOD2 WILD-TYPE     45     58     64     41
D867V1, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOD2 MUTATED        1      0      2
  NOD2 WILD-TYPE     50     83     75
D867V2, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOD2 MUTATED       14      1      1      4
  NOD2 WILD-TYPE    164    182    100     16
D867V3, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            4             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOD2 MUTATED        5      2      9
  NOD2 WILD-TYPE     82     78     91
D867V4, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOD2 MUTATED        0      5      9
  NOD2 WILD-TYPE     89    155    129
D867V5, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOD2 MUTATED        8      6      0
  NOD2 WILD-TYPE    174    127     72
D867V6, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOD2 MUTATED        2      8      6      4
  NOD2 WILD-TYPE    110     88     86    182
D867V7, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            8             88
  CLUS_3            6             86
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOD2 MUTATED        3      1      8      1      4      0      3
  NOD2 WILD-TYPE     57     49     41     39     59    125     96
D867V8, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOD2 MUTATED       11      3      0      6
  NOD2 WILD-TYPE    119     75     68    190
D867V9, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NOD2 MUTATED        5      3      1      3      6      1      1      0      0
  NOD2 WILD-TYPE     35     59     27     77     63     47     42     28     74
D867V10, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOD2 MUTATED        2      1      0      0
  NOD2 WILD-TYPE     31     30     27     19
D867V11, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOD2 MUTATED        2      0      0      1
  NOD2 WILD-TYPE     52     10     24     21
D867V12, multiclass
        clus
vv       NOD2 MUTATED NOD2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(868) Variable = RSPO2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO2 MUTATED        2      1      2      1
  RSPO2 WILD-TYPE     44     57     62     42
D868V1, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO2 MUTATED        1      4      1
  RSPO2 WILD-TYPE     50     79     76
D868V2, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             4              79
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO2 MUTATED        8      8      5      0
  RSPO2 WILD-TYPE    170    175     96     20
D868V3, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             8             175
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO2 MUTATED        7      2      7
  RSPO2 WILD-TYPE     80     78     93
D868V4, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO2 MUTATED        3      6      6
  RSPO2 WILD-TYPE     86    154    132
D868V5, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RSPO2 MUTATED        7      6      2
  RSPO2 WILD-TYPE    175    127     70
D868V6, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO2 MUTATED        5      5      7      4
  RSPO2 WILD-TYPE    107     91     85    182
D868V7, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RSPO2 MUTATED        2      2      3      4      4      4      2
  RSPO2 WILD-TYPE     58     48     46     36     59    121     97
D868V8, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             4              36
  CLUS_5             4              59
  CLUS_6             4             121
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO2 MUTATED        8      4      5      4
  RSPO2 WILD-TYPE    122     74     63    192
D868V9, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             5              63
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RSPO2 MUTATED        2      3      3      3      2      1      4      0
  RSPO2 WILD-TYPE     38     59     25     77     67     47     39     28
                 vv
clus              CLUS_9
  RSPO2 MUTATED        3
  RSPO2 WILD-TYPE     71
D868V10, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO2 MUTATED        3      2      0      2
  RSPO2 WILD-TYPE     30     29     27     17
D868V11, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSPO2 MUTATED        6      0      0      1
  RSPO2 WILD-TYPE     48     10     24     21
D868V12, multiclass
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(869) Variable = PCDH20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH20 MUTATED        3      1      1      2
  PCDH20 WILD-TYPE     43     57     63     41
D869V1, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH20 MUTATED        4      2      1
  PCDH20 WILD-TYPE     47     81     76
D869V2, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH20 MUTATED       15      6      3      0
  PCDH20 WILD-TYPE    163    177     98     20
D869V3, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              6              177
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH20 MUTATED        5      2     10
  PCDH20 WILD-TYPE     82     78     90
D869V4, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH20 MUTATED        3      8     10
  PCDH20 WILD-TYPE     86    152    128
D869V5, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              8              152
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH20 MUTATED       10      8      3
  PCDH20 WILD-TYPE    172    125     69
D869V6, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH20 MUTATED        4      9      4      7
  PCDH20 WILD-TYPE    108     87     88    179
D869V7, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              9               87
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDH20 MUTATED        3      3      7      2      1      2      6
  PCDH20 WILD-TYPE     57     47     42     38     62    123     93
D869V8, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              7               42
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH20 MUTATED        7      3      5      9
  PCDH20 WILD-TYPE    123     75     63    187
D869V9, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              5               63
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDH20 MUTATED        1      3      3      0      7      0      5      3
  PCDH20 WILD-TYPE     39     59     25     80     62     48     38     25
                  vv
clus               CLUS_9
  PCDH20 MUTATED        2
  PCDH20 WILD-TYPE     72
D869V10, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              0               80
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              5               38
  CLUS_8              3               25
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH20 MUTATED        2      1      2      4
  PCDH20 WILD-TYPE     31     30     25     15
D869V11, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH20 MUTATED        4      0      3      2
  PCDH20 WILD-TYPE     50     10     21     20
D869V12, multiclass
        clus
vv       PCDH20 MUTATED PCDH20 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(870) Variable = OR5H15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H15 MUTATED        0      0      0      1
  OR5H15 WILD-TYPE     46     58     64     42
D870V1, multiclass
[1] "Remove cluster labels:" "OR5H15 MUTATED"        
clus
  OR5H15 MUTATED OR5H15 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5H15 MUTATED        0      0      1
  OR5H15 WILD-TYPE     51     83     76
D870V2, multiclass
[1] "Remove cluster labels:" "OR5H15 MUTATED"        
clus
  OR5H15 MUTATED OR5H15 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H15 MUTATED        2      2      2      1
  OR5H15 WILD-TYPE    176    181     99     19
D870V3, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5H15 MUTATED        2      1      3
  OR5H15 WILD-TYPE     85     79     97
D870V4, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5H15 MUTATED        1      2      4
  OR5H15 WILD-TYPE     88    158    134
D870V5, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5H15 MUTATED        5      2      0
  OR5H15 WILD-TYPE    177    131     72
D870V6, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H15 MUTATED        1      2      3      1
  OR5H15 WILD-TYPE    111     94     89    185
D870V7, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5H15 MUTATED        1      0      3      0      3      0      0
  OR5H15 WILD-TYPE     59     50     46     40     60    125     99
D870V8, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H15 MUTATED        3      1      1      2
  OR5H15 WILD-TYPE    127     77     67    194
D870V9, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5H15 MUTATED        1      3      1      0      2      0      0      0
  OR5H15 WILD-TYPE     39     59     27     80     67     48     43     28
                  vv
clus               CLUS_9
  OR5H15 MUTATED        0
  OR5H15 WILD-TYPE     74
D870V10, multiclass
        clus
vv       OR5H15 MUTATED OR5H15 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H15 MUTATED        0      1      1      0
  OR5H15 WILD-TYPE     33     30     26     19
D870V11, multiclass
[1] "Remove cluster labels:" "OR5H15 MUTATED"        
clus
  OR5H15 MUTATED OR5H15 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H15 MUTATED        1      1      0      0
  OR5H15 WILD-TYPE     53      9     24     22
D870V12, multiclass
[1] "Remove cluster labels:" "OR5H15 MUTATED"        
clus
  OR5H15 MUTATED OR5H15 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" "OR5H15 WILD-TYPE" 

Clustering(871) Variable = ACTL6B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6B MUTATED        1      0      0      0
  ACTL6B WILD-TYPE     45     58     64     43
D871V1, multiclass
[1] "Remove cluster labels:" "ACTL6B MUTATED"        
clus
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6B MUTATED        1      0      0
  ACTL6B WILD-TYPE     50     83     77
D871V2, multiclass
[1] "Remove cluster labels:" "ACTL6B MUTATED"        
clus
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6B MUTATED        3      5      1      0
  ACTL6B WILD-TYPE    175    178    100     20
D871V3, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              3              175
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6B MUTATED        0      2      5
  ACTL6B WILD-TYPE     87     78     95
D871V4, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              0               87
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6B MUTATED        0      2      5
  ACTL6B WILD-TYPE     89    158    133
D871V5, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6B MUTATED        4      3      0
  ACTL6B WILD-TYPE    178    130     72
D871V6, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6B MUTATED        2      4      1      2
  ACTL6B WILD-TYPE    110     92     91    184
D871V7, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTL6B MUTATED        1      3      1      1      1      0      2
  ACTL6B WILD-TYPE     59     47     48     39     62    125     97
D871V8, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6B MUTATED        6      1      0      2
  ACTL6B WILD-TYPE    124     77     68    194
D871V9, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACTL6B MUTATED        5      1      0      0      0      1      0      1
  ACTL6B WILD-TYPE     35     61     28     80     69     47     43     27
                  vv
clus               CLUS_9
  ACTL6B MUTATED        1
  ACTL6B WILD-TYPE     73
D871V10, multiclass
        clus
vv       ACTL6B MUTATED ACTL6B WILD-TYPE
  CLUS_1              5               35
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6B MUTATED        1      0      0      1
  ACTL6B WILD-TYPE     32     31     27     18
D871V11, multiclass
[1] "Remove cluster labels:" "ACTL6B MUTATED"        
clus
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6B MUTATED        1      0      0      1
  ACTL6B WILD-TYPE     53     10     24     21
D871V12, multiclass
[1] "Remove cluster labels:" "ACTL6B MUTATED"        
clus
  ACTL6B MUTATED ACTL6B WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" "ACTL6B WILD-TYPE" 

Clustering(872) Variable = ZNF167 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF167 MUTATED        2      1      1      3
  ZNF167 WILD-TYPE     44     57     63     40
D872V1, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF167 MUTATED        2      3      2
  ZNF167 WILD-TYPE     49     80     75
D872V2, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF167 MUTATED       13      1      4      0
  ZNF167 WILD-TYPE    165    182     97     20
D872V3, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              1              182
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF167 MUTATED        7      2      2
  ZNF167 WILD-TYPE     80     78     98
D872V4, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF167 MUTATED        2      5      6
  ZNF167 WILD-TYPE     87    155    132
D872V5, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF167 MUTATED        5      5      3
  ZNF167 WILD-TYPE    177    128     69
D872V6, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              5              128
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF167 MUTATED        1      3      5      9
  ZNF167 WILD-TYPE    111     93     87    177
D872V7, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              5               87
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF167 MUTATED        2      1      5      0      2      2      6
  ZNF167 WILD-TYPE     58     49     44     40     61    123     93
D872V8, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF167 MUTATED        4      5      0      8
  ZNF167 WILD-TYPE    126     73     68    188
D872V9, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF167 MUTATED        2      3      1      3      3      1      1      0
  ZNF167 WILD-TYPE     38     59     27     77     66     47     42     28
                  vv
clus               CLUS_9
  ZNF167 MUTATED        3
  ZNF167 WILD-TYPE     71
D872V10, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF167 MUTATED        2      0      0      2
  ZNF167 WILD-TYPE     31     31     27     17
D872V11, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF167 MUTATED        4      0      0      0
  ZNF167 WILD-TYPE     50     10     24     22
D872V12, multiclass
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(873) Variable = LPAR6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPAR6 MUTATED        0      0      0      2
  LPAR6 WILD-TYPE     46     58     64     41
D873V1, multiclass
[1] "Remove cluster labels:" "LPAR6 MUTATED"         
clus
  LPAR6 MUTATED LPAR6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AY-4071 
"LPAR6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPAR6 MUTATED        1      0      1
  LPAR6 WILD-TYPE     50     83     76
D873V2, multiclass
[1] "Remove cluster labels:" "LPAR6 MUTATED"         
clus
  LPAR6 MUTATED LPAR6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AY-4071 
"LPAR6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPAR6 MUTATED        5      1      1      1
  LPAR6 WILD-TYPE    173    182    100     19
D873V3, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPAR6 MUTATED        3      1      2
  LPAR6 WILD-TYPE     84     79     98
D873V4, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPAR6 MUTATED        0      2      4
  LPAR6 WILD-TYPE     89    158    134
D873V5, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPAR6 MUTATED        4      2      0
  LPAR6 WILD-TYPE    178    131     72
D873V6, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPAR6 MUTATED        2      2      2      2
  LPAR6 WILD-TYPE    110     94     90    184
D873V7, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LPAR6 MUTATED        2      2      2      0      1      0      1
  LPAR6 WILD-TYPE     58     48     47     40     62    125     98
D873V8, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPAR6 MUTATED        4      1      0      2
  LPAR6 WILD-TYPE    126     77     68    194
D873V9, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LPAR6 MUTATED        1      1      1      0      1      1      1      0
  LPAR6 WILD-TYPE     39     61     27     80     68     47     42     28
                 vv
clus              CLUS_9
  LPAR6 MUTATED        1
  LPAR6 WILD-TYPE     73
D873V10, multiclass
        clus
vv       LPAR6 MUTATED LPAR6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPAR6 MUTATED        1      0      0      1
  LPAR6 WILD-TYPE     32     31     27     18
D873V11, multiclass
[1] "Remove cluster labels:" "LPAR6 MUTATED"         
clus
  LPAR6 MUTATED LPAR6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPAR6 MUTATED        2      0      0      0
  LPAR6 WILD-TYPE     52     10     24     22
D873V12, multiclass
[1] "Remove cluster labels:" "LPAR6 MUTATED"         
clus
  LPAR6 MUTATED LPAR6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" "LPAR6 WILD-TYPE" 

Clustering(874) Variable = EIF4G2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G2 MUTATED        4      0      0      2
  EIF4G2 WILD-TYPE     42     58     64     41
D874V1, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G2 MUTATED        4      2      0
  EIF4G2 WILD-TYPE     47     81     77
D874V2, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G2 MUTATED        9      1      4      1
  EIF4G2 WILD-TYPE    169    182     97     19
D874V3, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              4               97
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G2 MUTATED        2      2      5
  EIF4G2 WILD-TYPE     85     78     95
D874V4, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G2 MUTATED        0      4      8
  EIF4G2 WILD-TYPE     89    156    130
D874V5, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G2 MUTATED        7      3      2
  EIF4G2 WILD-TYPE    175    130     70
D874V6, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G2 MUTATED        3      3      3      6
  EIF4G2 WILD-TYPE    109     93     89    180
D874V7, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF4G2 MUTATED        2      1      4      0      2      1      5
  EIF4G2 WILD-TYPE     58     49     45     40     61    124     94
D874V8, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G2 MUTATED        4      1      1      8
  EIF4G2 WILD-TYPE    126     77     67    188
D874V9, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF4G2 MUTATED        0      2      2      3      4      0      1      1
  EIF4G2 WILD-TYPE     40     60     26     77     65     48     42     27
                  vv
clus               CLUS_9
  EIF4G2 MUTATED        1
  EIF4G2 WILD-TYPE     73
D874V10, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G2 MUTATED        1      1      0      1
  EIF4G2 WILD-TYPE     32     30     27     18
D874V11, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G2 MUTATED        2      0      0      1
  EIF4G2 WILD-TYPE     52     10     24     21
D874V12, multiclass
        clus
vv       EIF4G2 MUTATED EIF4G2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(875) Variable = PDP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDP2 MUTATED        0      0      0      1
  PDP2 WILD-TYPE     46     58     64     42
D875V1, multiclass
[1] "Remove cluster labels:" "PDP2 MUTATED"          
clus
  PDP2 MUTATED PDP2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDP2 MUTATED        0      0      1
  PDP2 WILD-TYPE     51     83     76
D875V2, multiclass
[1] "Remove cluster labels:" "PDP2 MUTATED"          
clus
  PDP2 MUTATED PDP2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDP2 MUTATED        6      0      0      0
  PDP2 WILD-TYPE    172    183    101     20
D875V3, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDP2 MUTATED        1      1      3
  PDP2 WILD-TYPE     86     79     97
D875V4, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDP2 MUTATED        1      2      2
  PDP2 WILD-TYPE     88    158    136
D875V5, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDP2 MUTATED        2      2      1
  PDP2 WILD-TYPE    180    131     71
D875V6, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDP2 MUTATED        0      2      3      1
  PDP2 WILD-TYPE    112     94     89    185
D875V7, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDP2 MUTATED        1      0      2      1      2      0      0
  PDP2 WILD-TYPE     59     50     47     39     61    125     99
D875V8, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDP2 MUTATED        3      2      0      1
  PDP2 WILD-TYPE    127     76     68    195
D875V9, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PDP2 MUTATED        2      2      0      0      2      0      0      0      0
  PDP2 WILD-TYPE     38     60     28     80     67     48     43     28     74
D875V10, multiclass
        clus
vv       PDP2 MUTATED PDP2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDP2 MUTATED        0      0      0      1
  PDP2 WILD-TYPE     33     31     27     18
D875V11, multiclass
[1] "Remove cluster labels:" "PDP2 MUTATED"          
clus
  PDP2 MUTATED PDP2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-G5-6641 
"PDP2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDP2 MUTATED        0      0      1      0
  PDP2 WILD-TYPE     54     10     23     22
D875V12, multiclass
[1] "Remove cluster labels:" "PDP2 MUTATED"          
clus
  PDP2 MUTATED PDP2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" "PDP2 WILD-TYPE" 
    TCGA-G5-6641 
"PDP2 WILD-TYPE" 

Clustering(876) Variable = C4ORF49 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF49 MUTATED        0      0      0      0
  C4ORF49 WILD-TYPE     46     58     64     43
D876V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C4ORF49 MUTATED        0      0      0
  C4ORF49 WILD-TYPE     51     83     77
D876V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF49 MUTATED        3      2      0      0
  C4ORF49 WILD-TYPE    175    181    101     20
D876V3, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C4ORF49 MUTATED        1      1      3
  C4ORF49 WILD-TYPE     86     79     97
D876V4, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C4ORF49 MUTATED        0      3      2
  C4ORF49 WILD-TYPE     89    157    136
D876V5, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C4ORF49 MUTATED        3      2      0
  C4ORF49 WILD-TYPE    179    131     72
D876V6, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF49 MUTATED        1      3      0      1
  C4ORF49 WILD-TYPE    111     93     92    185
D876V7, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C4ORF49 MUTATED        0      3      1      0      0      0      1
  C4ORF49 WILD-TYPE     60     47     48     40     63    125     98
D876V8, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               3                47
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF49 MUTATED        3      1      0      1
  C4ORF49 WILD-TYPE    127     77     68    195
D876V9, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C4ORF49 MUTATED        0      1      1      0      1      1      0      0
  C4ORF49 WILD-TYPE     40     61     27     80     68     47     43     28
                   vv
clus                CLUS_9
  C4ORF49 MUTATED        1
  C4ORF49 WILD-TYPE     73
D876V10, multiclass
        clus
vv       C4ORF49 MUTATED C4ORF49 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF49 MUTATED        0      0      0      0
  C4ORF49 WILD-TYPE     33     31     27     19
D876V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF49 MUTATED        0      0      0      0
  C4ORF49 WILD-TYPE     54     10     24     22
D876V12, multiclass

Clustering(877) Variable = KLRC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRC3 MUTATED        1      0      0      1
  KLRC3 WILD-TYPE     45     58     64     42
D877V1, multiclass
[1] "Remove cluster labels:" "KLRC3 MUTATED"         
clus
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AY-4071 
"KLRC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRC3 MUTATED        1      0      1
  KLRC3 WILD-TYPE     50     83     76
D877V2, multiclass
[1] "Remove cluster labels:" "KLRC3 MUTATED"         
clus
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AY-4071 
"KLRC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRC3 MUTATED        4      0      1      1
  KLRC3 WILD-TYPE    174    183    100     19
D877V3, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRC3 MUTATED        2      0      2
  KLRC3 WILD-TYPE     85     80     98
D877V4, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRC3 MUTATED        0      3      2
  KLRC3 WILD-TYPE     89    157    136
D877V5, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRC3 MUTATED        2      2      1
  KLRC3 WILD-TYPE    180    131     71
D877V6, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRC3 MUTATED        0      3      1      2
  KLRC3 WILD-TYPE    112     93     91    184
D877V7, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLRC3 MUTATED        1      0      2      1      1      0      1
  KLRC3 WILD-TYPE     59     50     47     39     62    125     98
D877V8, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRC3 MUTATED        2      1      0      3
  KLRC3 WILD-TYPE    128     77     68    193
D877V9, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLRC3 MUTATED        0      1      1      0      4      0      0      0
  KLRC3 WILD-TYPE     40     61     27     80     65     48     43     28
                 vv
clus              CLUS_9
  KLRC3 MUTATED        0
  KLRC3 WILD-TYPE     74
D877V10, multiclass
        clus
vv       KLRC3 MUTATED KLRC3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRC3 MUTATED        1      0      0      1
  KLRC3 WILD-TYPE     32     31     27     18
D877V11, multiclass
[1] "Remove cluster labels:" "KLRC3 MUTATED"         
clus
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6805 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRC3 MUTATED        1      0      1      0
  KLRC3 WILD-TYPE     53     10     23     22
D877V12, multiclass
[1] "Remove cluster labels:" "KLRC3 MUTATED"         
clus
  KLRC3 MUTATED KLRC3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6805 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" "KLRC3 WILD-TYPE" 

Clustering(878) Variable = RARS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARS2 MUTATED        2      0      0      3
  RARS2 WILD-TYPE     44     58     64     40
D878V1, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RARS2 MUTATED        2      1      2
  RARS2 WILD-TYPE     49     82     75
D878V2, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARS2 MUTATED        8      0      1      1
  RARS2 WILD-TYPE    170    183    100     19
D878V3, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RARS2 MUTATED        4      0      1
  RARS2 WILD-TYPE     83     80     99
D878V4, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RARS2 MUTATED        1      1      3
  RARS2 WILD-TYPE     88    159    135
D878V5, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RARS2 MUTATED        2      2      1
  RARS2 WILD-TYPE    180    131     71
D878V6, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARS2 MUTATED        0      3      2      5
  RARS2 WILD-TYPE    112     93     90    181
D878V7, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RARS2 MUTATED        2      1      0      2      1      1      3
  RARS2 WILD-TYPE     58     49     49     38     62    124     96
D878V8, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARS2 MUTATED        3      1      0      5
  RARS2 WILD-TYPE    127     77     68    191
D878V9, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RARS2 MUTATED        1      1      1      3      2      0      0      0
  RARS2 WILD-TYPE     39     61     27     77     67     48     43     28
                 vv
clus              CLUS_9
  RARS2 MUTATED        1
  RARS2 WILD-TYPE     73
D878V10, multiclass
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARS2 MUTATED        0      0      1      0
  RARS2 WILD-TYPE     33     31     26     19
D878V11, multiclass
[1] "Remove cluster labels:" "RARS2 MUTATED"         
clus
  RARS2 MUTATED RARS2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6620      TCGA-CI-6621 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-G5-6641 
"RARS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARS2 MUTATED        0      0      0      1
  RARS2 WILD-TYPE     54     10     24     21
D878V12, multiclass
[1] "Remove cluster labels:" "RARS2 MUTATED"         
clus
  RARS2 MUTATED RARS2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6620      TCGA-CI-6621 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-G5-6641 
"RARS2 WILD-TYPE" 

Clustering(879) Variable = OR5K2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5K2 MUTATED        0      0      1      0
  OR5K2 WILD-TYPE     46     58     63     43
D879V1, multiclass
[1] "Remove cluster labels:" "OR5K2 MUTATED"         
clus
  OR5K2 MUTATED OR5K2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5K2 MUTATED        0      0      1
  OR5K2 WILD-TYPE     51     83     76
D879V2, multiclass
[1] "Remove cluster labels:" "OR5K2 MUTATED"         
clus
  OR5K2 MUTATED OR5K2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"OR5K2 WILD-TYPE" "OR5K2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5K2 MUTATED        9      0      2      0
  OR5K2 WILD-TYPE    169    183     99     20
D879V3, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5K2 MUTATED        5      0      5
  OR5K2 WILD-TYPE     82     80     95
D879V4, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5K2 MUTATED        3      3      4
  OR5K2 WILD-TYPE     86    157    134
D879V5, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5K2 MUTATED        5      4      1
  OR5K2 WILD-TYPE    177    129     71
D879V6, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5K2 MUTATED        0      7      2      2
  OR5K2 WILD-TYPE    112     89     90    184
D879V7, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             7              89
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5K2 MUTATED        0      2      4      3      0      1      1
  OR5K2 WILD-TYPE     60     48     45     37     63    124     98
D879V8, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5K2 MUTATED        6      1      1      3
  OR5K2 WILD-TYPE    124     77     67    193
D879V9, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5K2 MUTATED        3      3      0      1      1      0      1      0
  OR5K2 WILD-TYPE     37     59     28     79     68     48     42     28
                 vv
clus              CLUS_9
  OR5K2 MUTATED        2
  OR5K2 WILD-TYPE     72
D879V10, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5K2 MUTATED        0      1      1      2
  OR5K2 WILD-TYPE     33     30     26     17
D879V11, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5K2 MUTATED        2      0      2      0
  OR5K2 WILD-TYPE     52     10     22     22
D879V12, multiclass
        clus
vv       OR5K2 MUTATED OR5K2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(880) Variable = GABRP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRP MUTATED        1      0      0      2
  GABRP WILD-TYPE     45     58     64     41
D880V1, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRP MUTATED        0      2      1
  GABRP WILD-TYPE     51     81     76
D880V2, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRP MUTATED        7      3      3      0
  GABRP WILD-TYPE    171    180     98     20
D880V3, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRP MUTATED        4      1      5
  GABRP WILD-TYPE     83     79     95
D880V4, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRP MUTATED        1      4      3
  GABRP WILD-TYPE     88    156    135
D880V5, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRP MUTATED        3      3      2
  GABRP WILD-TYPE    179    130     70
D880V6, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRP MUTATED        3      7      0      3
  GABRP WILD-TYPE    109     89     92    183
D880V7, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             3             109
  CLUS_2             7              89
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABRP MUTATED        2      2      3      1      1      1      3
  GABRP WILD-TYPE     58     48     46     39     62    124     96
D880V8, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRP MUTATED        5      3      1      4
  GABRP WILD-TYPE    125     75     67    192
D880V9, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GABRP MUTATED        2      2      2      1      3      2      1      0
  GABRP WILD-TYPE     38     60     26     79     66     46     42     28
                 vv
clus              CLUS_9
  GABRP MUTATED        0
  GABRP WILD-TYPE     74
D880V10, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRP MUTATED        1      1      0      1
  GABRP WILD-TYPE     32     30     27     18
D880V11, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRP MUTATED        2      0      0      1
  GABRP WILD-TYPE     52     10     24     21
D880V12, multiclass
        clus
vv       GABRP MUTATED GABRP WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(881) Variable = CCT5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT5 MUTATED        1      1      0      1
  CCT5 WILD-TYPE     45     57     64     42
D881V1, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT5 MUTATED        1      2      0
  CCT5 WILD-TYPE     50     81     77
D881V2, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT5 MUTATED        6      2      0      0
  CCT5 WILD-TYPE    172    181    101     20
D881V3, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT5 MUTATED        1      1      3
  CCT5 WILD-TYPE     86     79     97
D881V4, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT5 MUTATED        0      3      3
  CCT5 WILD-TYPE     89    157    135
D881V5, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT5 MUTATED        3      3      0
  CCT5 WILD-TYPE    179    130     72
D881V6, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT5 MUTATED        1      3      1      3
  CCT5 WILD-TYPE    111     93     91    183
D881V7, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCT5 MUTATED        0      1      3      1      0      0      3
  CCT5 WILD-TYPE     60     49     46     39     63    125     96
D881V8, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT5 MUTATED        4      1      0      3
  CCT5 WILD-TYPE    126     77     68    193
D881V9, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CCT5 MUTATED        1      2      2      0      2      0      0      1      0
  CCT5 WILD-TYPE     39     60     26     80     67     48     43     27     74
D881V10, multiclass
        clus
vv       CCT5 MUTATED CCT5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT5 MUTATED        0      0      0      0
  CCT5 WILD-TYPE     33     31     27     19
D881V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT5 MUTATED        0      0      0      0
  CCT5 WILD-TYPE     54     10     24     22
D881V12, multiclass

Clustering(882) Variable = MRPS18B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS18B MUTATED        1      0      0      0
  MRPS18B WILD-TYPE     45     58     64     43
D882V1, multiclass
[1] "Remove cluster labels:" "MRPS18B MUTATED"       
clus
  MRPS18B MUTATED MRPS18B WILD-TYPE 
                1               210 
       TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677        TCGA-A6-2678 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3809 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MRPS18B MUTATED        1      0      0
  MRPS18B WILD-TYPE     50     83     77
D882V2, multiclass
[1] "Remove cluster labels:" "MRPS18B MUTATED"       
clus
  MRPS18B MUTATED MRPS18B WILD-TYPE 
                1               210 
       TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677        TCGA-A6-2678 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3809 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS18B MUTATED        1      1      3      0
  MRPS18B WILD-TYPE    177    182     98     20
D882V3, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               1               177
  CLUS_2               1               182
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MRPS18B MUTATED        0      1      3
  MRPS18B WILD-TYPE     87     79     97
D882V4, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               0                87
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MRPS18B MUTATED        0      3      0
  MRPS18B WILD-TYPE     89    157    138
D882V5, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               0               138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MRPS18B MUTATED        0      1      2
  MRPS18B WILD-TYPE    182    132     70
D882V6, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               0               182
  CLUS_2               1               132
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS18B MUTATED        1      3      0      1
  MRPS18B WILD-TYPE    111     93     92    185
D882V7, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPS18B MUTATED        0      2      1      1      0      0      1
  MRPS18B WILD-TYPE     60     48     48     39     63    125     98
D882V8, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS18B MUTATED        3      0      1      1
  MRPS18B WILD-TYPE    127     78     67    195
D882V9, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRPS18B MUTATED        0      0      1      2      1      1      0      0
  MRPS18B WILD-TYPE     40     62     27     78     68     47     43     28
                   vv
clus                CLUS_9
  MRPS18B MUTATED        0
  MRPS18B WILD-TYPE     74
D882V10, multiclass
        clus
vv       MRPS18B MUTATED MRPS18B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS18B MUTATED        0      0      1      0
  MRPS18B WILD-TYPE     33     31     26     19
D882V11, multiclass
[1] "Remove cluster labels:" "MRPS18B MUTATED"       
clus
  MRPS18B MUTATED MRPS18B WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-G5-6235 
"MRPS18B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS18B MUTATED        0      0      1      0
  MRPS18B WILD-TYPE     54     10     23     22
D882V12, multiclass
[1] "Remove cluster labels:" "MRPS18B MUTATED"       
clus
  MRPS18B MUTATED MRPS18B WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628 
"MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" "MRPS18B WILD-TYPE" 
       TCGA-G5-6235 
"MRPS18B WILD-TYPE" 

Clustering(883) Variable = LEF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEF1 MUTATED        3      1      0      1
  LEF1 WILD-TYPE     43     57     64     42
D883V1, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEF1 MUTATED        3      2      0
  LEF1 WILD-TYPE     48     81     77
D883V2, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEF1 MUTATED        6      0      1      1
  LEF1 WILD-TYPE    172    183    100     19
D883V3, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEF1 MUTATED        2      0      2
  LEF1 WILD-TYPE     85     80     98
D883V4, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEF1 MUTATED        1      2      4
  LEF1 WILD-TYPE     88    158    134
D883V5, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEF1 MUTATED        5      1      1
  LEF1 WILD-TYPE    177    132     71
D883V6, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEF1 MUTATED        0      1      2      6
  LEF1 WILD-TYPE    112     95     90    180
D883V7, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LEF1 MUTATED        0      0      2      0      1      2      4
  LEF1 WILD-TYPE     60     50     47     40     62    123     95
D883V8, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEF1 MUTATED        2      2      0      5
  LEF1 WILD-TYPE    128     76     68    191
D883V9, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LEF1 MUTATED        0      2      0      2      2      0      1      1      1
  LEF1 WILD-TYPE     40     60     28     78     67     48     42     27     73
D883V10, multiclass
        clus
vv       LEF1 MUTATED LEF1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEF1 MUTATED        0      0      0      1
  LEF1 WILD-TYPE     33     31     27     18
D883V11, multiclass
[1] "Remove cluster labels:" "LEF1 MUTATED"          
clus
  LEF1 MUTATED LEF1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-G5-6641 
"LEF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEF1 MUTATED        1      0      0      0
  LEF1 WILD-TYPE     53     10     24     22
D883V12, multiclass
[1] "Remove cluster labels:" "LEF1 MUTATED"          
clus
  LEF1 MUTATED LEF1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" "LEF1 WILD-TYPE" 
    TCGA-G5-6641 
"LEF1 WILD-TYPE" 

Clustering(884) Variable = CD55 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD55 MUTATED        2      0      1      1
  CD55 WILD-TYPE     44     58     63     42
D884V1, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD55 MUTATED        3      0      1
  CD55 WILD-TYPE     48     83     76
D884V2, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD55 MUTATED        6      1      1      0
  CD55 WILD-TYPE    172    182    100     20
D884V3, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD55 MUTATED        2      0      2
  CD55 WILD-TYPE     85     80     98
D884V4, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD55 MUTATED        1      2      2
  CD55 WILD-TYPE     88    158    136
D884V5, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD55 MUTATED        1      1      3
  CD55 WILD-TYPE    181    132     69
D884V6, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            1            132
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD55 MUTATED        0      3      1      4
  CD55 WILD-TYPE    112     93     91    182
D884V7, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD55 MUTATED        0      1      2      1      0      0      4
  CD55 WILD-TYPE     60     49     47     39     63    125     95
D884V8, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD55 MUTATED        3      1      0      4
  CD55 WILD-TYPE    127     77     68    192
D884V9, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CD55 MUTATED        1      2      2      0      0      0      0      3      0
  CD55 WILD-TYPE     39     60     26     80     69     48     43     25     74
D884V10, multiclass
        clus
vv       CD55 MUTATED CD55 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            3             25
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD55 MUTATED        1      0      0      0
  CD55 WILD-TYPE     32     31     27     19
D884V11, multiclass
[1] "Remove cluster labels:" "CD55 MUTATED"          
clus
  CD55 MUTATED CD55 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-G5-6641 
"CD55 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD55 MUTATED        1      0      0      0
  CD55 WILD-TYPE     53     10     24     22
D884V12, multiclass
[1] "Remove cluster labels:" "CD55 MUTATED"          
clus
  CD55 MUTATED CD55 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" "CD55 WILD-TYPE" 
    TCGA-G5-6641 
"CD55 WILD-TYPE" 

Clustering(885) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        3      0      0      0
  CIC WILD-TYPE     43     58     64     43
D885V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           0            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        3      0      0
  CIC WILD-TYPE     48     83     77
D885V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           3            48
  CLUS_2           0            83
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       19      3      1      0
  CIC WILD-TYPE    159    180    100     20
D885V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          19           159
  CLUS_2           3           180
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        8      2      9
  CIC WILD-TYPE     79     78     91
D885V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           8            79
  CLUS_2           2            78
  CLUS_3           9            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        1      5     14
  CIC WILD-TYPE     88    155    124
D885V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1            88
  CLUS_2           5           155
  CLUS_3          14           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       13      6      1
  CIC WILD-TYPE    169    127     71
D885V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          13           169
  CLUS_2           6           127
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        3     11      5      4
  CIC WILD-TYPE    109     85     87    182
D885V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           3           109
  CLUS_2          11            85
  CLUS_3           5            87
  CLUS_4           4           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIC MUTATED        0      3     14      1      1      0      4
  CIC WILD-TYPE     60     47     35     39     62    125     95
D885V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0            60
  CLUS_2           3            47
  CLUS_3          14            35
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       11      6      0      6
  CIC WILD-TYPE    119     72     68    190
D885V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          11           119
  CLUS_2           6            72
  CLUS_3           0            68
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CIC MUTATED        3      5      1      0      9      1      2      1      1
  CIC WILD-TYPE     37     57     27     80     60     47     41     27     73
D885V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           3            37
  CLUS_2           5            57
  CLUS_3           1            27
  CLUS_4           0            80
  CLUS_5           9            60
  CLUS_6           1            47
  CLUS_7           2            41
  CLUS_8           1            27
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        1      1      0      4
  CIC WILD-TYPE     32     30     27     15
D885V11, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           4            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        4      1      1      0
  CIC WILD-TYPE     50      9     23     22
D885V12, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           4            50
  CLUS_2           1             9
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(886) Variable = TXNDC6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC6 MUTATED        0      1      0      2
  TXNDC6 WILD-TYPE     46     57     64     41
D886V1, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC6 MUTATED        1      1      1
  TXNDC6 WILD-TYPE     50     82     76
D886V2, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC6 MUTATED        5      2      2      0
  TXNDC6 WILD-TYPE    173    181     99     20
D886V3, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC6 MUTATED        3      1      3
  TXNDC6 WILD-TYPE     84     79     97
D886V4, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC6 MUTATED        1      4      3
  TXNDC6 WILD-TYPE     88    156    135
D886V5, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNDC6 MUTATED        4      3      1
  TXNDC6 WILD-TYPE    178    130     71
D886V6, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC6 MUTATED        1      3      1      4
  TXNDC6 WILD-TYPE    111     93     91    182
D886V7, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNDC6 MUTATED        2      1      2      0      0      2      2
  TXNDC6 WILD-TYPE     58     49     47     40     63    123     97
D886V8, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC6 MUTATED        4      0      0      5
  TXNDC6 WILD-TYPE    126     78     68    191
D886V9, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXNDC6 MUTATED        0      1      1      2      4      0      0      0
  TXNDC6 WILD-TYPE     40     61     27     78     65     48     43     28
                  vv
clus               CLUS_9
  TXNDC6 MUTATED        1
  TXNDC6 WILD-TYPE     73
D886V10, multiclass
        clus
vv       TXNDC6 MUTATED TXNDC6 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC6 MUTATED        0      0      0      2
  TXNDC6 WILD-TYPE     33     31     27     17
D886V11, multiclass
[1] "Remove cluster labels:" "TXNDC6 MUTATED"        
clus
  TXNDC6 MUTATED TXNDC6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1HA 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC6 MUTATED        1      0      1      0
  TXNDC6 WILD-TYPE     53     10     23     22
D886V12, multiclass
[1] "Remove cluster labels:" "TXNDC6 MUTATED"        
clus
  TXNDC6 MUTATED TXNDC6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1HA 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" "TXNDC6 WILD-TYPE" 

Clustering(887) Variable = HERC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        1      0      2      3
  HERC5 WILD-TYPE     45     58     62     40
D887V1, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC5 MUTATED        2      2      2
  HERC5 WILD-TYPE     49     81     75
D887V2, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED       10      4      7      0
  HERC5 WILD-TYPE    168    179     94     20
D887V3, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             7              94
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC5 MUTATED        4      4      7
  HERC5 WILD-TYPE     83     76     93
D887V4, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             4              76
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC5 MUTATED        5     10      6
  HERC5 WILD-TYPE     84    150    132
D887V5, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            10             150
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC5 MUTATED        8      9      4
  HERC5 WILD-TYPE    174    124     68
D887V6, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        5      8      1      7
  HERC5 WILD-TYPE    107     88     91    179
D887V7, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             8              88
  CLUS_3             1              91
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HERC5 MUTATED        3      4      2      3      3      2      4
  HERC5 WILD-TYPE     57     46     47     37     60    123     95
D887V8, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             2              47
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        8      3      2      8
  HERC5 WILD-TYPE    122     75     66    188
D887V9, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HERC5 MUTATED        1      3      2      2      3      1      5      0
  HERC5 WILD-TYPE     39     59     26     78     66     47     38     28
                 vv
clus              CLUS_9
  HERC5 MUTATED        4
  HERC5 WILD-TYPE     70
D887V10, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             5              38
  CLUS_8             0              28
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        0      1      2      0
  HERC5 WILD-TYPE     33     30     25     19
D887V11, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC5 MUTATED        1      0      2      0
  HERC5 WILD-TYPE     53     10     22     22
D887V12, multiclass
        clus
vv       HERC5 MUTATED HERC5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(888) Variable = ENSA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENSA MUTATED        0      0      0      1
  ENSA WILD-TYPE     46     58     64     42
D888V1, multiclass
[1] "Remove cluster labels:" "ENSA MUTATED"          
clus
  ENSA MUTATED ENSA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENSA MUTATED        0      0      1
  ENSA WILD-TYPE     51     83     76
D888V2, multiclass
[1] "Remove cluster labels:" "ENSA MUTATED"          
clus
  ENSA MUTATED ENSA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" "ENSA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ENSA WILD-TYPE" "ENSA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENSA MUTATED        5      1      0      0
  ENSA WILD-TYPE    173    182    101     20
D888V3, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENSA MUTATED        2      1      2
  ENSA WILD-TYPE     85     79     98
D888V4, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENSA MUTATED        1      3      1
  ENSA WILD-TYPE     88    157    137
D888V5, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENSA MUTATED        1      2      2
  ENSA WILD-TYPE    181    131     70
D888V6, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENSA MUTATED        2      2      1      1
  ENSA WILD-TYPE    110     94     91    185
D888V7, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENSA MUTATED        3      0      3      0      0      0      0
  ENSA WILD-TYPE     57     50     46     40     63    125     99
D888V8, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENSA MUTATED        2      1      1      2
  ENSA WILD-TYPE    128     77     67    194
D888V9, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ENSA MUTATED        1      1      0      0      3      0      1      0      0
  ENSA WILD-TYPE     39     61     28     80     66     48     42     28     74
D888V10, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENSA MUTATED        0      0      1      2
  ENSA WILD-TYPE     33     31     26     17
D888V11, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENSA MUTATED        1      0      1      1
  ENSA WILD-TYPE     53     10     23     21
D888V12, multiclass
        clus
vv       ENSA MUTATED ENSA WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(889) Variable = TMEM45A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM45A MUTATED        0      0      0      0
  TMEM45A WILD-TYPE     46     58     64     43
D889V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM45A MUTATED        0      0      0
  TMEM45A WILD-TYPE     51     83     77
D889V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM45A MUTATED        3      1      0      0
  TMEM45A WILD-TYPE    175    182    101     20
D889V3, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM45A MUTATED        0      0      4
  TMEM45A WILD-TYPE     87     80     96
D889V4, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM45A MUTATED        1      2      1
  TMEM45A WILD-TYPE     88    158    137
D889V5, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM45A MUTATED        3      1      0
  TMEM45A WILD-TYPE    179    132     72
D889V6, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM45A MUTATED        0      2      2      0
  TMEM45A WILD-TYPE    112     94     90    186
D889V7, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM45A MUTATED        0      1      2      0      1      0      0
  TMEM45A WILD-TYPE     60     49     47     40     62    125     99
D889V8, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM45A MUTATED        3      1      0      0
  TMEM45A WILD-TYPE    127     77     68    196
D889V9, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM45A MUTATED        0      1      0      1      1      0      1      0
  TMEM45A WILD-TYPE     40     61     28     79     68     48     42     28
                   vv
clus                CLUS_9
  TMEM45A MUTATED        0
  TMEM45A WILD-TYPE     74
D889V10, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM45A MUTATED        0      0      0      3
  TMEM45A WILD-TYPE     33     31     27     16
D889V11, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM45A MUTATED        2      0      1      0
  TMEM45A WILD-TYPE     52     10     23     22
D889V12, multiclass
        clus
vv       TMEM45A MUTATED TMEM45A WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(890) Variable = TNNI3K MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNI3K MUTATED        6      1      1      3
  TNNI3K WILD-TYPE     40     57     63     40
D890V1, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              6               40
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNNI3K MUTATED        7      2      2
  TNNI3K WILD-TYPE     44     81     75
D890V2, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              7               44
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNI3K MUTATED       15      5      4      2
  TNNI3K WILD-TYPE    163    178     97     18
D890V3, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1             15              163
  CLUS_2              5              178
  CLUS_3              4               97
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNNI3K MUTATED        5      4      6
  TNNI3K WILD-TYPE     82     76     94
D890V4, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              5               82
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNNI3K MUTATED        2     10     11
  TNNI3K WILD-TYPE     87    150    127
D890V5, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              2               87
  CLUS_2             10              150
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNNI3K MUTATED       11      8      4
  TNNI3K WILD-TYPE    171    125     68
D890V6, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1             11              171
  CLUS_2              8              125
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNI3K MUTATED        5      5      3     12
  TNNI3K WILD-TYPE    107     91     89    174
D890V7, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              5              107
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNNI3K MUTATED        4      5      3      1      1      1     10
  TNNI3K WILD-TYPE     56     45     46     39     62    124     89
D890V8, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              4               56
  CLUS_2              5               45
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNI3K MUTATED        9      1      2     12
  TNNI3K WILD-TYPE    121     77     66    184
D890V9, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              9              121
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNNI3K MUTATED        3      1      3      5      4      3      0      2
  TNNI3K WILD-TYPE     37     61     25     75     65     45     43     26
                  vv
clus               CLUS_9
  TNNI3K MUTATED        3
  TNNI3K WILD-TYPE     71
D890V10, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              3               37
  CLUS_2              1               61
  CLUS_3              3               25
  CLUS_4              5               75
  CLUS_5              4               65
  CLUS_6              3               45
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNI3K MUTATED        1      0      2      1
  TNNI3K WILD-TYPE     32     31     25     18
D890V11, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNI3K MUTATED        1      0      2      1
  TNNI3K WILD-TYPE     53     10     22     21
D890V12, multiclass
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(891) Variable = PFN4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFN4 MUTATED        1      0      0      0
  PFN4 WILD-TYPE     45     58     64     43
D891V1, multiclass
[1] "Remove cluster labels:" "PFN4 MUTATED"          
clus
  PFN4 MUTATED PFN4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFN4 MUTATED        1      0      0
  PFN4 WILD-TYPE     50     83     77
D891V2, multiclass
[1] "Remove cluster labels:" "PFN4 MUTATED"          
clus
  PFN4 MUTATED PFN4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PFN4 WILD-TYPE" "PFN4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFN4 MUTATED        5      0      1      0
  PFN4 WILD-TYPE    173    183    100     20
D891V3, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFN4 MUTATED        1      0      4
  PFN4 WILD-TYPE     86     80     96
D891V4, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFN4 MUTATED        1      2      1
  PFN4 WILD-TYPE     88    158    137
D891V5, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFN4 MUTATED        3      0      1
  PFN4 WILD-TYPE    179    133     71
D891V6, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFN4 MUTATED        0      4      1      1
  PFN4 WILD-TYPE    112     92     91    185
D891V7, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PFN4 MUTATED        0      0      4      0      1      0      1
  PFN4 WILD-TYPE     60     50     45     40     62    125     98
D891V8, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFN4 MUTATED        4      0      0      2
  PFN4 WILD-TYPE    126     78     68    194
D891V9, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PFN4 MUTATED        2      1      0      0      3      0      0      0      0
  PFN4 WILD-TYPE     38     61     28     80     66     48     43     28     74
D891V10, multiclass
        clus
vv       PFN4 MUTATED PFN4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFN4 MUTATED        0      0      0      0
  PFN4 WILD-TYPE     33     31     27     19
D891V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFN4 MUTATED        0      0      0      0
  PFN4 WILD-TYPE     54     10     24     22
D891V12, multiclass

Clustering(892) Variable = GPR75 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR75 MUTATED        1      0      1      0
  GPR75 WILD-TYPE     45     58     63     43
D892V1, multiclass
[1] "Remove cluster labels:" "GPR75 MUTATED"         
clus
  GPR75 MUTATED GPR75 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A026 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AY-4071 
"GPR75 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR75 MUTATED        1      0      1
  GPR75 WILD-TYPE     50     83     76
D892V2, multiclass
[1] "Remove cluster labels:" "GPR75 MUTATED"         
clus
  GPR75 MUTATED GPR75 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A026 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AY-4071 
"GPR75 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR75 MUTATED        6      0      2      1
  GPR75 WILD-TYPE    172    183     99     19
D892V3, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR75 MUTATED        3      0      4
  GPR75 WILD-TYPE     84     80     96
D892V4, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR75 MUTATED        0      3      5
  GPR75 WILD-TYPE     89    157    133
D892V5, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR75 MUTATED        6      1      1
  GPR75 WILD-TYPE    176    132     71
D892V6, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR75 MUTATED        0      4      3      2
  GPR75 WILD-TYPE    112     92     89    184
D892V7, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR75 MUTATED        0      2      3      0      2      1      1
  GPR75 WILD-TYPE     60     48     46     40     61    124     98
D892V8, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR75 MUTATED        4      1      1      3
  GPR75 WILD-TYPE    126     77     67    193
D892V9, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR75 MUTATED        1      3      0      1      3      0      1      0
  GPR75 WILD-TYPE     39     59     28     79     66     48     42     28
                 vv
clus              CLUS_9
  GPR75 MUTATED        0
  GPR75 WILD-TYPE     74
D892V10, multiclass
        clus
vv       GPR75 MUTATED GPR75 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR75 MUTATED        0      0      1      1
  GPR75 WILD-TYPE     33     31     26     18
D892V11, multiclass
[1] "Remove cluster labels:" "GPR75 MUTATED"         
clus
  GPR75 MUTATED GPR75 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR75 MUTATED        0      0      2      0
  GPR75 WILD-TYPE     54     10     22     22
D892V12, multiclass
[1] "Remove cluster labels:" "GPR75 MUTATED"         
clus
  GPR75 MUTATED GPR75 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" "GPR75 WILD-TYPE" 

Clustering(893) Variable = LAX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAX1 MUTATED        0      0      0      1
  LAX1 WILD-TYPE     46     58     64     42
D893V1, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LAX1 MUTATED        0      0      1
  LAX1 WILD-TYPE     51     83     76
D893V2, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAX1 MUTATED        5      0      0      0
  LAX1 WILD-TYPE    173    183    101     20
D893V3, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LAX1 MUTATED        2      0      2
  LAX1 WILD-TYPE     85     80     98
D893V4, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LAX1 MUTATED        0      1      4
  LAX1 WILD-TYPE     89    159    134
D893V5, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LAX1 MUTATED        4      1      0
  LAX1 WILD-TYPE    178    132     72
D893V6, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAX1 MUTATED        0      2      2      1
  LAX1 WILD-TYPE    112     94     90    185
D893V7, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAX1 MUTATED        1      0      4      0      0      0      0
  LAX1 WILD-TYPE     59     50     45     40     63    125     99
D893V8, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAX1 MUTATED        2      0      0      3
  LAX1 WILD-TYPE    128     78     68    193
D893V9, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LAX1 MUTATED        0      1      0      0      4      0      0      0      0
  LAX1 WILD-TYPE     40     61     28     80     65     48     43     28     74
D893V10, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAX1 MUTATED        0      0      0      2
  LAX1 WILD-TYPE     33     31     27     17
D893V11, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-6748     TCGA-CL-5918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAX1 MUTATED        1      0      1      0
  LAX1 WILD-TYPE     53     10     23     22
D893V12, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-6748     TCGA-CL-5918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 

Clustering(894) Variable = DHX36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        1      0      0      1
  DHX36 WILD-TYPE     45     58     64     42
D894V1, multiclass
[1] "Remove cluster labels:" "DHX36 MUTATED"         
clus
  DHX36 MUTATED DHX36 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AY-4071 
"DHX36 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        1      0      1
  DHX36 WILD-TYPE     50     83     76
D894V2, multiclass
[1] "Remove cluster labels:" "DHX36 MUTATED"         
clus
  DHX36 MUTATED DHX36 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-AY-4071 
"DHX36 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED       13      2      2      0
  DHX36 WILD-TYPE    165    181     99     20
D894V3, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        7      2      6
  DHX36 WILD-TYPE     80     78     94
D894V4, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        1      5      8
  DHX36 WILD-TYPE     88    155    130
D894V5, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        7      6      1
  DHX36 WILD-TYPE    175    127     71
D894V6, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        3      5      7      2
  DHX36 WILD-TYPE    109     91     85    184
D894V7, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX36 MUTATED        4      2      8      1      0      0      2
  DHX36 WILD-TYPE     56     48     41     39     63    125     97
D894V8, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        6      3      3      5
  DHX36 WILD-TYPE    124     75     65    191
D894V9, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             3              65
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DHX36 MUTATED        0      2      0      3      7      1      3      0
  DHX36 WILD-TYPE     40     60     28     77     62     47     40     28
                 vv
clus              CLUS_9
  DHX36 MUTATED        1
  DHX36 WILD-TYPE     73
D894V10, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        4      0      2      3
  DHX36 WILD-TYPE     29     31     25     16
D894V11, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        4      0      4      1
  DHX36 WILD-TYPE     50     10     20     21
D894V12, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(895) Variable = C13ORF23 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF23 MUTATED        1      0      0      2
  C13ORF23 WILD-TYPE     45     58     64     41
D895V1, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF23 MUTATED        2      1      0
  C13ORF23 WILD-TYPE     49     82     77
D895V2, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF23 MUTATED        9      2      2      0
  C13ORF23 WILD-TYPE    169    181     99     20
D895V3, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                2                181
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF23 MUTATED        4      1      5
  C13ORF23 WILD-TYPE     83     79     95
D895V4, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                1                 79
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF23 MUTATED        1      6      4
  C13ORF23 WILD-TYPE     88    154    134
D895V5, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                6                154
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF23 MUTATED        6      5      0
  C13ORF23 WILD-TYPE    176    128     72
D895V6, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                5                128
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF23 MUTATED        3      3      4      3
  C13ORF23 WILD-TYPE    109     93     88    183
D895V7, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                3                 93
  CLUS_3                4                 88
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C13ORF23 MUTATED        2      2      4      0      2      0      3
  C13ORF23 WILD-TYPE     58     48     45     40     61    125     96
D895V8, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                2                 48
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF23 MUTATED        5      3      2      3
  C13ORF23 WILD-TYPE    125     75     66    193
D895V9, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                3                 75
  CLUS_3                2                 66
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C13ORF23 MUTATED        0      3      3      0      4      0      3      0
  C13ORF23 WILD-TYPE     40     59     25     80     65     48     40     28
                    vv
clus                 CLUS_9
  C13ORF23 MUTATED        0
  C13ORF23 WILD-TYPE     74
D895V10, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                3                 25
  CLUS_4                0                 80
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF23 MUTATED        1      1      1      3
  C13ORF23 WILD-TYPE     32     30     26     16
D895V11, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF23 MUTATED        2      1      2      1
  C13ORF23 WILD-TYPE     52      9     22     21
D895V12, multiclass
        clus
vv       C13ORF23 MUTATED C13ORF23 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                1                  9
  CLUS_3                2                 22
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(896) Variable = BAG5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG5 MUTATED        0      0      0      2
  BAG5 WILD-TYPE     46     58     64     41
D896V1, multiclass
[1] "Remove cluster labels:" "BAG5 MUTATED"          
clus
  BAG5 MUTATED BAG5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AY-4071 
"BAG5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG5 MUTATED        0      0      2
  BAG5 WILD-TYPE     51     83     75
D896V2, multiclass
[1] "Remove cluster labels:" "BAG5 MUTATED"          
clus
  BAG5 MUTATED BAG5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AY-4071 
"BAG5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG5 MUTATED        3      0      0      0
  BAG5 WILD-TYPE    175    183    101     20
D896V3, multiclass
        clus
vv       BAG5 MUTATED BAG5 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG5 MUTATED        0      0      1
  BAG5 WILD-TYPE     87     80     99
D896V4, multiclass
[1] "Remove cluster labels:" "BAG5 MUTATED"          
clus
  BAG5 MUTATED BAG5 WILD-TYPE 
             1            266 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AD-6890     TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-2693     TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-4681     TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CK-4948     TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CK-5913     TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CK-6746     TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CL-5917     TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6929     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-7000     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XD 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4     TCGA-DM-A1D6 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB     TCGA-DM-A282 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A285     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DM-A28H     TCGA-DM-A28K     TCGA-DT-5265 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DY-A0XA     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-EI-6507     TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6856     TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6293     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6315     TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6586     TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G5-6235     TCGA-G5-6641 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG5 MUTATED        0      1      1
  BAG5 WILD-TYPE     89    159    137
D896V5, multiclass
[1] "Remove cluster labels:" "BAG5 MUTATED"          
clus
  BAG5 MUTATED BAG5 WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6928     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G5-6641 
"BAG5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG5 MUTATED        1      1      0
  BAG5 WILD-TYPE    181    132     72
D896V6, multiclass
[1] "Remove cluster labels:" "BAG5 MUTATED"          
clus
  BAG5 MUTATED BAG5 WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-D5-6928     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" "BAG5 WILD-TYPE" 
    TCGA-G5-6641 
"BAG5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG5 MUTATED        0      1      0      2
  BAG5 WILD-TYPE    112     95     92    184
D896V7, multiclass
        clus
vv       BAG5 MUTATED BAG5 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            0             92
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAG5 MUTATED        1      0      1      0      0      0      1
  BAG5 WILD-TYPE     59     50     48     40     63    125     98
D896V8, multiclass
        clus
vv       BAG5 MUTATED BAG5 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG5 MUTATED        0      0      0      3
  BAG5 WILD-TYPE    130     78     68    193
D896V9, multiclass
        clus
vv       BAG5 MUTATED BAG5 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BAG5 MUTATED        0      0      1      0      2      0      0      0      0
  BAG5 WILD-TYPE     40     62     27     80     67     48     43     28     74
D896V10, multiclass
        clus
vv       BAG5 MUTATED BAG5 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG5 MUTATED        0      0      0      0
  BAG5 WILD-TYPE     33     31     27     19
D896V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG5 MUTATED        0      0      0      0
  BAG5 WILD-TYPE     54     10     24     22
D896V12, multiclass

Clustering(897) Variable = MIPOL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPOL1 MUTATED        0      0      1      0
  MIPOL1 WILD-TYPE     46     58     63     43
D897V1, multiclass
[1] "Remove cluster labels:" "MIPOL1 MUTATED"        
clus
  MIPOL1 MUTATED MIPOL1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856       TCGA-AA-3858 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MIPOL1 MUTATED        0      0      1
  MIPOL1 WILD-TYPE     51     83     76
D897V2, multiclass
[1] "Remove cluster labels:" "MIPOL1 MUTATED"        
clus
  MIPOL1 MUTATED MIPOL1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856       TCGA-AA-3858 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPOL1 MUTATED        2      2      0      1
  MIPOL1 WILD-TYPE    176    181    101     19
D897V3, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MIPOL1 MUTATED        3      0      1
  MIPOL1 WILD-TYPE     84     80     99
D897V4, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MIPOL1 MUTATED        1      2      1
  MIPOL1 WILD-TYPE     88    158    137
D897V5, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MIPOL1 MUTATED        2      1      1
  MIPOL1 WILD-TYPE    180    132     71
D897V6, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPOL1 MUTATED        1      2      2      0
  MIPOL1 WILD-TYPE    111     94     90    186
D897V7, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIPOL1 MUTATED        1      1      2      0      0      1      0
  MIPOL1 WILD-TYPE     59     49     47     40     63    124     99
D897V8, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPOL1 MUTATED        1      2      0      2
  MIPOL1 WILD-TYPE    129     76     68    194
D897V9, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MIPOL1 MUTATED        1      0      0      0      1      1      1      0
  MIPOL1 WILD-TYPE     39     62     28     80     68     47     42     28
                  vv
clus               CLUS_9
  MIPOL1 MUTATED        1
  MIPOL1 WILD-TYPE     73
D897V10, multiclass
        clus
vv       MIPOL1 MUTATED MIPOL1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPOL1 MUTATED        1      0      0      1
  MIPOL1 WILD-TYPE     32     31     27     18
D897V11, multiclass
[1] "Remove cluster labels:" "MIPOL1 MUTATED"        
clus
  MIPOL1 MUTATED MIPOL1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPOL1 MUTATED        1      0      1      0
  MIPOL1 WILD-TYPE     53     10     23     22
D897V12, multiclass
[1] "Remove cluster labels:" "MIPOL1 MUTATED"        
clus
  MIPOL1 MUTATED MIPOL1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" "MIPOL1 WILD-TYPE" 

Clustering(898) Variable = CDH22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH22 MUTATED        3      2      1      2
  CDH22 WILD-TYPE     43     56     63     41
D898V1, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH22 MUTATED        3      2      3
  CDH22 WILD-TYPE     48     81     74
D898V2, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH22 MUTATED       10      6      3      1
  CDH22 WILD-TYPE    168    177     98     19
D898V3, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             6             177
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH22 MUTATED        1      3      8
  CDH22 WILD-TYPE     86     77     92
D898V4, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH22 MUTATED        2      6      9
  CDH22 WILD-TYPE     87    154    129
D898V5, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH22 MUTATED       10      6      1
  CDH22 WILD-TYPE    172    127     71
D898V6, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH22 MUTATED        3      6      4      7
  CDH22 WILD-TYPE    109     90     88    179
D898V7, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH22 MUTATED        2      3      4      1      2      3      5
  CDH22 WILD-TYPE     58     47     45     39     61    122     94
D898V8, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH22 MUTATED        9      1      4      6
  CDH22 WILD-TYPE    121     77     64    190
D898V9, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             1              77
  CLUS_3             4              64
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDH22 MUTATED        2      1      1      5      4      1      3      0
  CDH22 WILD-TYPE     38     61     27     75     65     47     40     28
                 vv
clus              CLUS_9
  CDH22 MUTATED        3
  CDH22 WILD-TYPE     71
D898V10, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             5              75
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH22 MUTATED        2      1      2      1
  CDH22 WILD-TYPE     31     30     25     18
D898V11, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH22 MUTATED        2      2      2      0
  CDH22 WILD-TYPE     52      8     22     22
D898V12, multiclass
        clus
vv       CDH22 MUTATED CDH22 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(899) Variable = MAPK9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK9 MUTATED        1      1      0      2
  MAPK9 WILD-TYPE     45     57     64     41
D899V1, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK9 MUTATED        0      3      1
  MAPK9 WILD-TYPE     51     80     76
D899V2, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK9 MUTATED        8      2      2      0
  MAPK9 WILD-TYPE    170    181     99     20
D899V3, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK9 MUTATED        3      1      4
  MAPK9 WILD-TYPE     84     79     96
D899V4, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK9 MUTATED        2      4      4
  MAPK9 WILD-TYPE     87    156    134
D899V5, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAPK9 MUTATED        6      4      0
  MAPK9 WILD-TYPE    176    129     72
D899V6, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK9 MUTATED        3      3      3      3
  MAPK9 WILD-TYPE    109     93     89    183
D899V7, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK9 MUTATED        3      2      3      0      1      2      1
  MAPK9 WILD-TYPE     57     48     46     40     62    123     98
D899V8, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK9 MUTATED        5      2      2      3
  MAPK9 WILD-TYPE    125     76     66    193
D899V9, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAPK9 MUTATED        1      2      2      1      3      1      1      0
  MAPK9 WILD-TYPE     39     60     26     79     66     47     42     28
                 vv
clus              CLUS_9
  MAPK9 MUTATED        1
  MAPK9 WILD-TYPE     73
D899V10, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK9 MUTATED        0      0      2      3
  MAPK9 WILD-TYPE     33     31     25     16
D899V11, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK9 MUTATED        2      0      3      0
  MAPK9 WILD-TYPE     52     10     21     22
D899V12, multiclass
        clus
vv       MAPK9 MUTATED MAPK9 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(900) Variable = NRK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED        5      1      0      3
  NRK WILD-TYPE     41     57     64     40
D900V1, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           5            41
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NRK MUTATED        4      3      2
  NRK WILD-TYPE     47     80     75
D900V2, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           4            47
  CLUS_2           3            80
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED       16      7      3      3
  NRK WILD-TYPE    162    176     98     17
D900V3, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1          16           162
  CLUS_2           7           176
  CLUS_3           3            98
  CLUS_4           3            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NRK MUTATED        6      3     11
  NRK WILD-TYPE     81     77     89
D900V4, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           6            81
  CLUS_2           3            77
  CLUS_3          11            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NRK MUTATED        1     11      8
  NRK WILD-TYPE     88    149    130
D900V5, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           1            88
  CLUS_2          11           149
  CLUS_3           8           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NRK MUTATED        9      7      4
  NRK WILD-TYPE    173    126     68
D900V6, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           9           173
  CLUS_2           7           126
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED        5      9      6      9
  NRK WILD-TYPE    107     87     86    177
D900V7, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           5           107
  CLUS_2           9            87
  CLUS_3           6            86
  CLUS_4           9           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRK MUTATED        4      2      6      7      2      1      7
  NRK WILD-TYPE     56     48     43     33     61    124     92
D900V8, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           4            56
  CLUS_2           2            48
  CLUS_3           6            43
  CLUS_4           7            33
  CLUS_5           2            61
  CLUS_6           1           124
  CLUS_7           7            92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED       14      2      3     10
  NRK WILD-TYPE    116     76     65    186
D900V9, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1          14           116
  CLUS_2           2            76
  CLUS_3           3            65
  CLUS_4          10           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NRK MUTATED        2      4      3      6      9      1      3      1      0
  NRK WILD-TYPE     38     58     25     74     60     47     40     27     74
D900V10, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           2            38
  CLUS_2           4            58
  CLUS_3           3            25
  CLUS_4           6            74
  CLUS_5           9            60
  CLUS_6           1            47
  CLUS_7           3            40
  CLUS_8           1            27
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED        3      2      1      0
  NRK WILD-TYPE     30     29     26     19
D900V11, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           3            30
  CLUS_2           2            29
  CLUS_3           1            26
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED        3      0      1      2
  NRK WILD-TYPE     51     10     23     20
D900V12, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           2            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(901) Variable = TMEM131 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM131 MUTATED        3      1      0      1
  TMEM131 WILD-TYPE     43     57     64     42
D901V1, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM131 MUTATED        2      2      1
  TMEM131 WILD-TYPE     49     81     76
D901V2, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM131 MUTATED       11      6      3      1
  TMEM131 WILD-TYPE    167    177     98     19
D901V3, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               6               177
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM131 MUTATED        6      3      8
  TMEM131 WILD-TYPE     81     77     92
D901V4, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               3                77
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM131 MUTATED        3      8      8
  TMEM131 WILD-TYPE     86    152    130
D901V5, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               8               152
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM131 MUTATED       11      7      1
  TMEM131 WILD-TYPE    171    126     71
D901V6, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               7               126
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM131 MUTATED        4      8      5      5
  TMEM131 WILD-TYPE    108     88     87    181
D901V7, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               8                88
  CLUS_3               5                87
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM131 MUTATED        4      3      7      1      1      2      4
  TMEM131 WILD-TYPE     56     47     42     39     62    123     95
D901V8, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               3                47
  CLUS_3               7                42
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM131 MUTATED       11      1      4      6
  TMEM131 WILD-TYPE    119     77     64    190
D901V9, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1              11               119
  CLUS_2               1                77
  CLUS_3               4                64
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM131 MUTATED        3      2      2      3      6      1      1      1
  TMEM131 WILD-TYPE     37     60     26     77     63     47     42     27
                   vv
clus                CLUS_9
  TMEM131 MUTATED        3
  TMEM131 WILD-TYPE     71
D901V10, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM131 MUTATED        1      0      0      2
  TMEM131 WILD-TYPE     32     31     27     17
D901V11, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM131 MUTATED        1      0      1      1
  TMEM131 WILD-TYPE     53     10     23     21
D901V12, multiclass
        clus
vv       TMEM131 MUTATED TMEM131 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(902) Variable = DOCK8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED        3      1      1      2
  DOCK8 WILD-TYPE     43     57     63     41
D902V1, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        2      3      2
  DOCK8 WILD-TYPE     49     80     75
D902V2, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED       16      3      1      1
  DOCK8 WILD-TYPE    162    180    100     19
D902V3, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        6      2      7
  DOCK8 WILD-TYPE     81     78     93
D902V4, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED        2      5      8
  DOCK8 WILD-TYPE     87    155    130
D902V5, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK8 MUTATED       10      4      1
  DOCK8 WILD-TYPE    172    129     71
D902V6, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED        3      5      7      7
  DOCK8 WILD-TYPE    109     91     85    179
D902V7, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOCK8 MUTATED        2      2     10      0      2      2      4
  DOCK8 WILD-TYPE     58     48     39     40     61    123     95
D902V8, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3            10              39
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED       11      3      2      6
  DOCK8 WILD-TYPE    119     75     66    190
D902V9, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DOCK8 MUTATED        3      4      2      2      7      0      2      1
  DOCK8 WILD-TYPE     37     58     26     78     62     48     41     27
                 vv
clus              CLUS_9
  DOCK8 MUTATED        1
  DOCK8 WILD-TYPE     73
D902V10, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED        1      1      1      5
  DOCK8 WILD-TYPE     32     30     26     14
D902V11, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK8 MUTATED        5      0      2      1
  DOCK8 WILD-TYPE     49     10     22     21
D902V12, multiclass
        clus
vv       DOCK8 MUTATED DOCK8 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(903) Variable = FLNB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        3      0      0      6
  FLNB WILD-TYPE     43     58     64     37
D903V1, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED        7      1      1
  FLNB WILD-TYPE     44     82     76
D903V2, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            7             44
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED       26      4      1      0
  FLNB WILD-TYPE    152    179    100     20
D903V3, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           26            152
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED        4      0     15
  FLNB WILD-TYPE     83     80     85
D903V4, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3           15             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED        6     11     11
  FLNB WILD-TYPE     83    149    127
D903V5, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            6             83
  CLUS_2           11            149
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED       13     11      4
  FLNB WILD-TYPE    169    122     68
D903V6, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           13            169
  CLUS_2           11            122
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        1     13      5     12
  FLNB WILD-TYPE    111     83     87    174
D903V7, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            1            111
  CLUS_2           13             83
  CLUS_3            5             87
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLNB MUTATED        2      3     10      2      2      1     11
  FLNB WILD-TYPE     58     47     39     38     61    124     88
D903V8, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3           10             39
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7           11             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        8      3      3     14
  FLNB WILD-TYPE    122     75     65    182
D903V9, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            8            122
  CLUS_2            3             75
  CLUS_3            3             65
  CLUS_4           14            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FLNB MUTATED        3      5      1      2     13      1      1      1      1
  FLNB WILD-TYPE     37     57     27     78     56     47     42     27     73
D903V10, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            3             37
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5           13             56
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        1      0      1      4
  FLNB WILD-TYPE     32     31     26     15
D903V11, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        3      0      3      0
  FLNB WILD-TYPE     51     10     21     22
D903V12, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(904) Variable = PTTG1IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTTG1IP MUTATED        0      0      0      0
  PTTG1IP WILD-TYPE     46     58     64     43
D904V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PTTG1IP MUTATED        0      0      0
  PTTG1IP WILD-TYPE     51     83     77
D904V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTTG1IP MUTATED        5      0      1      1
  PTTG1IP WILD-TYPE    173    183    100     19
D904V3, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PTTG1IP MUTATED        4      1      2
  PTTG1IP WILD-TYPE     83     79     98
D904V4, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               4                83
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PTTG1IP MUTATED        0      3      4
  PTTG1IP WILD-TYPE     89    157    134
D904V5, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PTTG1IP MUTATED        4      2      1
  PTTG1IP WILD-TYPE    178    131     71
D904V6, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               4               178
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTTG1IP MUTATED        1      4      1      1
  PTTG1IP WILD-TYPE    111     92     91    185
D904V7, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTTG1IP MUTATED        1      1      3      1      0      0      1
  PTTG1IP WILD-TYPE     59     49     46     39     63    125     98
D904V8, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTTG1IP MUTATED        4      0      1      2
  PTTG1IP WILD-TYPE    126     78     67    194
D904V9, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTTG1IP MUTATED        1      1      2      0      1      0      1      0
  PTTG1IP WILD-TYPE     39     61     26     80     68     48     42     28
                   vv
clus                CLUS_9
  PTTG1IP MUTATED        1
  PTTG1IP WILD-TYPE     73
D904V10, multiclass
        clus
vv       PTTG1IP MUTATED PTTG1IP WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTTG1IP MUTATED        0      0      0      1
  PTTG1IP WILD-TYPE     33     31     27     18
D904V11, multiclass
[1] "Remove cluster labels:" "PTTG1IP MUTATED"       
clus
  PTTG1IP MUTATED PTTG1IP WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-G5-6641 
"PTTG1IP WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTTG1IP MUTATED        1      0      0      0
  PTTG1IP WILD-TYPE     53     10     24     22
D904V12, multiclass
[1] "Remove cluster labels:" "PTTG1IP MUTATED"       
clus
  PTTG1IP MUTATED PTTG1IP WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235 
"PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" "PTTG1IP WILD-TYPE" 
       TCGA-G5-6641 
"PTTG1IP WILD-TYPE" 

Clustering(905) Variable = FUCA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA2 MUTATED        0      0      0      0
  FUCA2 WILD-TYPE     46     58     64     43
D905V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUCA2 MUTATED        0      0      0
  FUCA2 WILD-TYPE     51     83     77
D905V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA2 MUTATED        1      2      1      1
  FUCA2 WILD-TYPE    177    181    100     19
D905V3, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUCA2 MUTATED        3      2      0
  FUCA2 WILD-TYPE     84     78    100
D905V4, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUCA2 MUTATED        0      2      2
  FUCA2 WILD-TYPE     89    158    136
D905V5, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUCA2 MUTATED        2      2      0
  FUCA2 WILD-TYPE    180    131     72
D905V6, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA2 MUTATED        2      1      2      0
  FUCA2 WILD-TYPE    110     95     90    186
D905V7, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FUCA2 MUTATED        3      0      1      1      0      0      0
  FUCA2 WILD-TYPE     57     50     48     39     63    125     99
D905V8, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA2 MUTATED        2      1      2      0
  FUCA2 WILD-TYPE    128     77     66    196
D905V9, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FUCA2 MUTATED        1      1      0      1      0      0      2      0
  FUCA2 WILD-TYPE     39     61     28     79     69     48     41     28
                 vv
clus              CLUS_9
  FUCA2 MUTATED        0
  FUCA2 WILD-TYPE     74
D905V10, multiclass
        clus
vv       FUCA2 MUTATED FUCA2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA2 MUTATED        0      0      0      1
  FUCA2 WILD-TYPE     33     31     27     18
D905V11, multiclass
[1] "Remove cluster labels:" "FUCA2 MUTATED"         
clus
  FUCA2 MUTATED FUCA2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-G5-6641 
"FUCA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA2 MUTATED        1      0      0      0
  FUCA2 WILD-TYPE     53     10     24     22
D905V12, multiclass
[1] "Remove cluster labels:" "FUCA2 MUTATED"         
clus
  FUCA2 MUTATED FUCA2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" "FUCA2 WILD-TYPE" 
     TCGA-G5-6641 
"FUCA2 WILD-TYPE" 

Clustering(906) Variable = VN1R4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VN1R4 MUTATED        1      0      0      1
  VN1R4 WILD-TYPE     45     58     64     42
D906V1, multiclass
[1] "Remove cluster labels:" "VN1R4 MUTATED"         
clus
  VN1R4 MUTATED VN1R4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AY-4071 
"VN1R4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VN1R4 MUTATED        1      1      0
  VN1R4 WILD-TYPE     50     82     77
D906V2, multiclass
[1] "Remove cluster labels:" "VN1R4 MUTATED"         
clus
  VN1R4 MUTATED VN1R4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AY-4071 
"VN1R4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VN1R4 MUTATED        4      1      2      0
  VN1R4 WILD-TYPE    174    182     99     20
D906V3, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VN1R4 MUTATED        3      1      2
  VN1R4 WILD-TYPE     84     79     98
D906V4, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VN1R4 MUTATED        2      1      4
  VN1R4 WILD-TYPE     87    159    134
D906V5, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VN1R4 MUTATED        5      1      1
  VN1R4 WILD-TYPE    177    132     71
D906V6, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VN1R4 MUTATED        0      1      5      2
  VN1R4 WILD-TYPE    112     95     87    184
D906V7, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VN1R4 MUTATED        1      0      2      0      3      0      2
  VN1R4 WILD-TYPE     59     50     47     40     60    125     97
D906V8, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VN1R4 MUTATED        3      3      0      2
  VN1R4 WILD-TYPE    127     75     68    194
D906V9, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VN1R4 MUTATED        1      3      1      1      2      0      0      0
  VN1R4 WILD-TYPE     39     59     27     79     67     48     43     28
                 vv
clus              CLUS_9
  VN1R4 MUTATED        0
  VN1R4 WILD-TYPE     74
D906V10, multiclass
        clus
vv       VN1R4 MUTATED VN1R4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VN1R4 MUTATED        0      1      0      1
  VN1R4 WILD-TYPE     33     30     27     18
D906V11, multiclass
[1] "Remove cluster labels:" "VN1R4 MUTATED"         
clus
  VN1R4 MUTATED VN1R4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6812 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VN1R4 MUTATED        2      0      0      0
  VN1R4 WILD-TYPE     52     10     24     22
D906V12, multiclass
[1] "Remove cluster labels:" "VN1R4 MUTATED"         
clus
  VN1R4 MUTATED VN1R4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6812 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" "VN1R4 WILD-TYPE" 

Clustering(907) Variable = ARFIP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFIP1 MUTATED        0      0      1      3
  ARFIP1 WILD-TYPE     46     58     63     40
D907V1, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARFIP1 MUTATED        2      1      1
  ARFIP1 WILD-TYPE     49     82     76
D907V2, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFIP1 MUTATED       10      1      1      0
  ARFIP1 WILD-TYPE    168    182    100     20
D907V3, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARFIP1 MUTATED        5      0      2
  ARFIP1 WILD-TYPE     82     80     98
D907V4, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARFIP1 MUTATED        2      2      7
  ARFIP1 WILD-TYPE     87    158    131
D907V5, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              2              158
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARFIP1 MUTATED        7      3      1
  ARFIP1 WILD-TYPE    175    130     71
D907V6, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFIP1 MUTATED        0      4      4      3
  ARFIP1 WILD-TYPE    112     92     88    183
D907V7, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARFIP1 MUTATED        0      2      4      0      2      1      2
  ARFIP1 WILD-TYPE     60     48     45     40     61    124     97
D907V8, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFIP1 MUTATED        2      3      1      5
  ARFIP1 WILD-TYPE    128     75     67    191
D907V9, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARFIP1 MUTATED        1      3      1      0      2      0      0      1
  ARFIP1 WILD-TYPE     39     59     27     80     67     48     43     27
                  vv
clus               CLUS_9
  ARFIP1 MUTATED        3
  ARFIP1 WILD-TYPE     71
D907V10, multiclass
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFIP1 MUTATED        0      1      0      1
  ARFIP1 WILD-TYPE     33     30     27     18
D907V11, multiclass
[1] "Remove cluster labels:" "ARFIP1 MUTATED"        
clus
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
               2              108 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFIP1 MUTATED        2      0      0      0
  ARFIP1 WILD-TYPE     52     10     24     22
D907V12, multiclass
[1] "Remove cluster labels:" "ARFIP1 MUTATED"        
clus
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
               2              108 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 

Clustering(908) Variable = UPF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF2 MUTATED        2      0      0      5
  UPF2 WILD-TYPE     44     58     64     38
D908V1, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPF2 MUTATED        4      0      3
  UPF2 WILD-TYPE     47     83     74
D908V2, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF2 MUTATED       17      1      1      0
  UPF2 WILD-TYPE    161    182    100     20
D908V3, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPF2 MUTATED        5      0      6
  UPF2 WILD-TYPE     82     80     94
D908V4, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPF2 MUTATED        2      6      8
  UPF2 WILD-TYPE     87    154    130
D908V5, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPF2 MUTATED        9      6      1
  UPF2 WILD-TYPE    173    127     71
D908V6, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF2 MUTATED        0      7      6      6
  UPF2 WILD-TYPE    112     89     86    180
D908V7, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            7             89
  CLUS_3            6             86
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UPF2 MUTATED        1      4      5      1      2      0      6
  UPF2 WILD-TYPE     59     46     44     39     61    125     93
D908V8, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            4             46
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF2 MUTATED        6      4      0      8
  UPF2 WILD-TYPE    124     74     68    188
D908V9, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UPF2 MUTATED        2      5      1      1      6      0      0      1      2
  UPF2 WILD-TYPE     38     57     27     79     63     48     43     27     72
D908V10, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF2 MUTATED        0      1      0      2
  UPF2 WILD-TYPE     33     30     27     17
D908V11, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF2 MUTATED        2      1      0      0
  UPF2 WILD-TYPE     52      9     24     22
D908V12, multiclass
        clus
vv       UPF2 MUTATED UPF2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(909) Variable = DCUN1D3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCUN1D3 MUTATED        2      0      0      0
  DCUN1D3 WILD-TYPE     44     58     64     43
D909V1, multiclass
[1] "Remove cluster labels:" "DCUN1D3 MUTATED"       
clus
  DCUN1D3 MUTATED DCUN1D3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3555 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00D 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AY-4071 
"DCUN1D3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCUN1D3 MUTATED        2      0      0
  DCUN1D3 WILD-TYPE     49     83     77
D909V2, multiclass
[1] "Remove cluster labels:" "DCUN1D3 MUTATED"       
clus
  DCUN1D3 MUTATED DCUN1D3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3555 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00D 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AY-4071 
"DCUN1D3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCUN1D3 MUTATED        3      2      2      0
  DCUN1D3 WILD-TYPE    175    181     99     20
D909V3, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCUN1D3 MUTATED        1      2      2
  DCUN1D3 WILD-TYPE     86     78     98
D909V4, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCUN1D3 MUTATED        2      2      3
  DCUN1D3 WILD-TYPE     87    158    135
D909V5, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCUN1D3 MUTATED        4      3      0
  DCUN1D3 WILD-TYPE    178    130     72
D909V6, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCUN1D3 MUTATED        2      2      1      2
  DCUN1D3 WILD-TYPE    110     94     91    184
D909V7, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCUN1D3 MUTATED        3      0      1      1      0      0      2
  DCUN1D3 WILD-TYPE     57     50     48     39     63    125     97
D909V8, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCUN1D3 MUTATED        3      1      1      1
  DCUN1D3 WILD-TYPE    127     77     67    195
D909V9, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCUN1D3 MUTATED        1      1      2      0      2      0      0      0
  DCUN1D3 WILD-TYPE     39     61     26     80     67     48     43     28
                   vv
clus                CLUS_9
  DCUN1D3 MUTATED        0
  DCUN1D3 WILD-TYPE     74
D909V10, multiclass
        clus
vv       DCUN1D3 MUTATED DCUN1D3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCUN1D3 MUTATED        0      2      0      0
  DCUN1D3 WILD-TYPE     33     29     27     19
D909V11, multiclass
[1] "Remove cluster labels:" "DCUN1D3 MUTATED"       
clus
  DCUN1D3 MUTATED DCUN1D3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6812 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCUN1D3 MUTATED        2      0      0      0
  DCUN1D3 WILD-TYPE     52     10     24     22
D909V12, multiclass
[1] "Remove cluster labels:" "DCUN1D3 MUTATED"       
clus
  DCUN1D3 MUTATED DCUN1D3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6812 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" "DCUN1D3 WILD-TYPE" 

Clustering(910) Variable = GPR115 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        3      1      1      1
  GPR115 WILD-TYPE     43     57     63     42
D910V1, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR115 MUTATED        3      1      2
  GPR115 WILD-TYPE     48     82     75
D910V2, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED       11      5      3      2
  GPR115 WILD-TYPE    167    178     98     18
D910V3, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR115 MUTATED        5      3      8
  GPR115 WILD-TYPE     82     77     92
D910V4, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR115 MUTATED        3      8      7
  GPR115 WILD-TYPE     86    152    131
D910V5, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              8              152
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR115 MUTATED        6      8      4
  GPR115 WILD-TYPE    176    125     68
D910V6, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              8              125
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        3      7      4      8
  GPR115 WILD-TYPE    109     89     88    178
D910V7, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              7               89
  CLUS_3              4               88
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR115 MUTATED        3      2      5      2      3      3      4
  GPR115 WILD-TYPE     57     48     44     38     60    122     95
D910V8, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              3              122
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        8      4      2      8
  GPR115 WILD-TYPE    122     74     66    188
D910V9, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR115 MUTATED        3      3      0      5      6      0      1      0
  GPR115 WILD-TYPE     37     59     28     75     63     48     42     28
                  vv
clus               CLUS_9
  GPR115 MUTATED        4
  GPR115 WILD-TYPE     70
D910V10, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              5               75
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        2      1      1      2
  GPR115 WILD-TYPE     31     30     26     17
D910V11, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        3      0      2      1
  GPR115 WILD-TYPE     51     10     22     21
D910V12, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(911) Variable = NLK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        0      1      0      0
  NLK WILD-TYPE     46     57     64     43
D911V1, multiclass
[1] "Remove cluster labels:" "NLK MUTATED"           
clus
  NLK MUTATED NLK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810    TCGA-AA-3514 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519    TCGA-AA-3520 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525    TCGA-AA-3526 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531    TCGA-AA-3532 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543    TCGA-AA-3544 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553    TCGA-AA-3554 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560    TCGA-AA-3561 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667    TCGA-AA-3672 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680    TCGA-AA-3681 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692    TCGA-AA-3693 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811    TCGA-AA-3812 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3821 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        0      1      0
  NLK WILD-TYPE     51     82     77
D911V2, multiclass
[1] "Remove cluster labels:" "NLK MUTATED"           
clus
  NLK MUTATED NLK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810    TCGA-AA-3514 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519    TCGA-AA-3520 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525    TCGA-AA-3526 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531    TCGA-AA-3532 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543    TCGA-AA-3544 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553    TCGA-AA-3554 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560    TCGA-AA-3561 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667    TCGA-AA-3672 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680    TCGA-AA-3681 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692    TCGA-AA-3693 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811    TCGA-AA-3812 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3821 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        5      2      4      0
  NLK WILD-TYPE    173    181     97     20
D911V3, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           5           173
  CLUS_2           2           181
  CLUS_3           4            97
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        4      1      5
  NLK WILD-TYPE     83     79     95
D911V4, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           4            83
  CLUS_2           1            79
  CLUS_3           5            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        0      2      7
  NLK WILD-TYPE     89    158    131
D911V5, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           0            89
  CLUS_2           2           158
  CLUS_3           7           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        7      1      1
  NLK WILD-TYPE    175    132     71
D911V6, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           7           175
  CLUS_2           1           132
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        1      6      3      1
  NLK WILD-TYPE    111     90     89    185
D911V7, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1           111
  CLUS_2           6            90
  CLUS_3           3            89
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLK MUTATED        1      3      4      0      2      1      0
  NLK WILD-TYPE     59     47     45     40     61    124     99
D911V8, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            59
  CLUS_2           3            47
  CLUS_3           4            45
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           1           124
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        8      2      1      0
  NLK WILD-TYPE    122     76     67    196
D911V9, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           8           122
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NLK MUTATED        2      3      0      2      3      0      0      0      1
  NLK WILD-TYPE     38     59     28     78     66     48     43     28     73
D911V10, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           2            38
  CLUS_2           3            59
  CLUS_3           0            28
  CLUS_4           2            78
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        0      1      0      1
  NLK WILD-TYPE     33     30     27     18
D911V11, multiclass
[1] "Remove cluster labels:" "NLK MUTATED"           
clus
  NLK MUTATED NLK WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DM-A0XD    TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-EI-6506    TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-F4-6570    TCGA-F4-6704    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6625 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        1      0      1      0
  NLK WILD-TYPE     53     10     23     22
D911V12, multiclass
[1] "Remove cluster labels:" "NLK MUTATED"           
clus
  NLK MUTATED NLK WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DM-A0XD    TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-EI-6506    TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-F4-6570    TCGA-F4-6704    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6625 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"NLK WILD-TYPE" "NLK WILD-TYPE" "NLK WILD-TYPE" 

Clustering(912) Variable = ARHGAP32 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP32 MUTATED        2      0      0      5
  ARHGAP32 WILD-TYPE     44     58     64     38
D912V1, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                5                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP32 MUTATED        5      1      1
  ARHGAP32 WILD-TYPE     46     82     76
D912V2, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP32 MUTATED       17      5      3      0
  ARHGAP32 WILD-TYPE    161    178     98     20
D912V3, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1               17                161
  CLUS_2                5                178
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP32 MUTATED        1      6     12
  ARHGAP32 WILD-TYPE     86     74     88
D912V4, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                6                 74
  CLUS_3               12                 88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP32 MUTATED        6     10     10
  ARHGAP32 WILD-TYPE     83    150    128
D912V5, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                6                 83
  CLUS_2               10                150
  CLUS_3               10                128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP32 MUTATED       11     10      5
  ARHGAP32 WILD-TYPE    171    123     67
D912V6, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1               11                171
  CLUS_2               10                123
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP32 MUTATED        4     10      3      9
  ARHGAP32 WILD-TYPE    108     86     89    177
D912V7, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                4                108
  CLUS_2               10                 86
  CLUS_3                3                 89
  CLUS_4                9                177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP32 MUTATED        3      5      5      3      1      1      8
  ARHGAP32 WILD-TYPE     57     45     44     37     62    124     91
D912V8, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                5                 45
  CLUS_3                5                 44
  CLUS_4                3                 37
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                8                 91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP32 MUTATED        9      2      3     10
  ARHGAP32 WILD-TYPE    121     76     65    186
D912V9, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                9                121
  CLUS_2                2                 76
  CLUS_3                3                 65
  CLUS_4               10                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP32 MUTATED        7      2      2      2      8      0      1      0
  ARHGAP32 WILD-TYPE     33     60     26     78     61     48     42     28
                    vv
clus                 CLUS_9
  ARHGAP32 MUTATED        2
  ARHGAP32 WILD-TYPE     72
D912V10, multiclass
        clus
vv       ARHGAP32 MUTATED ARHGAP32 WILD-TYPE
  CLUS_1                7                 33
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                2                 78
  CLUS_5                8                 61
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP32 MUTATED        1      0      0      0
  ARHGAP32 WILD-TYPE     32     31     27     19
D912V11, multiclass
[1] "Remove cluster labels:" "ARHGAP32 MUTATED"      
clus
  ARHGAP32 MUTATED ARHGAP32 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-G5-6641 
"ARHGAP32 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP32 MUTATED        1      0      0      0
  ARHGAP32 WILD-TYPE     53     10     24     22
D912V12, multiclass
[1] "Remove cluster labels:" "ARHGAP32 MUTATED"      
clus
  ARHGAP32 MUTATED ARHGAP32 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" "ARHGAP32 WILD-TYPE" 
        TCGA-G5-6641 
"ARHGAP32 WILD-TYPE" 

Clustering(913) Variable = PIK3R4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R4 MUTATED        3      0      1      4
  PIK3R4 WILD-TYPE     43     58     63     39
D913V1, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R4 MUTATED        5      2      1
  PIK3R4 WILD-TYPE     46     81     76
D913V2, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R4 MUTATED       12      1      4      0
  PIK3R4 WILD-TYPE    166    182     97     20
D913V3, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              1              182
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R4 MUTATED        2      2      5
  PIK3R4 WILD-TYPE     85     78     95
D913V4, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R4 MUTATED        2      7      5
  PIK3R4 WILD-TYPE     87    153    133
D913V5, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R4 MUTATED        8      4      2
  PIK3R4 WILD-TYPE    174    129     70
D913V6, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R4 MUTATED        3      7      0      7
  PIK3R4 WILD-TYPE    109     89     92    179
D913V7, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              7               89
  CLUS_3              0               92
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3R4 MUTATED        2      0      4      2      1      1      7
  PIK3R4 WILD-TYPE     58     50     45     38     62    124     92
D913V8, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R4 MUTATED        6      1      1      6
  PIK3R4 WILD-TYPE    124     77     67    190
D913V9, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3R4 MUTATED        1      3      1      4      4      0      0      0
  PIK3R4 WILD-TYPE     39     59     27     76     65     48     43     28
                  vv
clus               CLUS_9
  PIK3R4 MUTATED        1
  PIK3R4 WILD-TYPE     73
D913V10, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R4 MUTATED        0      1      2      1
  PIK3R4 WILD-TYPE     33     30     25     18
D913V11, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R4 MUTATED        0      1      3      0
  PIK3R4 WILD-TYPE     54      9     21     22
D913V12, multiclass
        clus
vv       PIK3R4 MUTATED PIK3R4 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              1                9
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(914) Variable = GNAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        2      0      3      3
  GNAS WILD-TYPE     44     58     61     40
D914V1, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            3             61
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        2      1      5
  GNAS WILD-TYPE     49     82     72
D914V2, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED       19      6      7      2
  GNAS WILD-TYPE    159    177     94     18
D914V3, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           19            159
  CLUS_2            6            177
  CLUS_3            7             94
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        9      6     13
  GNAS WILD-TYPE     78     74     87
D914V4, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            9             78
  CLUS_2            6             74
  CLUS_3           13             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED        4     12     14
  GNAS WILD-TYPE     85    148    124
D914V5, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            4             85
  CLUS_2           12            148
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED       15     13      2
  GNAS WILD-TYPE    167    120     70
D914V6, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           15            167
  CLUS_2           13            120
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        6     17      7      6
  GNAS WILD-TYPE    106     79     85    180
D914V7, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            6            106
  CLUS_2           17             79
  CLUS_3            7             85
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNAS MUTATED        3      6     13      4      2      2      6
  GNAS WILD-TYPE     57     44     36     36     61    123     93
D914V8, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            3             57
  CLUS_2            6             44
  CLUS_3           13             36
  CLUS_4            4             36
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED       18      5      2     11
  GNAS WILD-TYPE    112     73     66    185
D914V9, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           18            112
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GNAS MUTATED        4      5      5      4     10      2      5      0      1
  GNAS WILD-TYPE     36     57     23     76     59     46     38     28     73
D914V10, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            4             36
  CLUS_2            5             57
  CLUS_3            5             23
  CLUS_4            4             76
  CLUS_5           10             59
  CLUS_6            2             46
  CLUS_7            5             38
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        3      2      1      7
  GNAS WILD-TYPE     30     29     26     12
D914V11, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            7             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        8      0      5      0
  GNAS WILD-TYPE     46     10     19     22
D914V12, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            8             46
  CLUS_2            0             10
  CLUS_3            5             19
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(915) Variable = TRIB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIB1 MUTATED        1      0      0      1
  TRIB1 WILD-TYPE     45     58     64     42
D915V1, multiclass
[1] "Remove cluster labels:" "TRIB1 MUTATED"         
clus
  TRIB1 MUTATED TRIB1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AY-4071 
"TRIB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIB1 MUTATED        1      0      1
  TRIB1 WILD-TYPE     50     83     76
D915V2, multiclass
[1] "Remove cluster labels:" "TRIB1 MUTATED"         
clus
  TRIB1 MUTATED TRIB1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" "TRIB1 WILD-TYPE" 
     TCGA-AY-4071 
"TRIB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIB1 MUTATED        6      1      2      0
  TRIB1 WILD-TYPE    172    182     99     20
D915V3, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIB1 MUTATED        3      1      3
  TRIB1 WILD-TYPE     84     79     97
D915V4, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIB1 MUTATED        1      2      2
  TRIB1 WILD-TYPE     88    158    136
D915V5, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIB1 MUTATED        3      1      1
  TRIB1 WILD-TYPE    179    132     71
D915V6, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIB1 MUTATED        1      4      2      2
  TRIB1 WILD-TYPE    111     92     90    184
D915V7, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIB1 MUTATED        2      0      4      2      0      0      1
  TRIB1 WILD-TYPE     58     50     45     38     63    125     98
D915V8, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIB1 MUTATED        4      2      1      2
  TRIB1 WILD-TYPE    126     76     67    194
D915V9, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIB1 MUTATED        2      1      0      2      3      1      0      0
  TRIB1 WILD-TYPE     38     61     28     78     66     47     43     28
                 vv
clus              CLUS_9
  TRIB1 MUTATED        0
  TRIB1 WILD-TYPE     74
D915V10, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIB1 MUTATED        2      0      1      1
  TRIB1 WILD-TYPE     31     31     26     18
D915V11, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIB1 MUTATED        2      0      1      1
  TRIB1 WILD-TYPE     52     10     23     21
D915V12, multiclass
        clus
vv       TRIB1 MUTATED TRIB1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(916) Variable = VWCE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWCE MUTATED        1      0      0      2
  VWCE WILD-TYPE     45     58     64     41
D916V1, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VWCE MUTATED        2      1      0
  VWCE WILD-TYPE     49     82     77
D916V2, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWCE MUTATED       10      2      3      0
  VWCE WILD-TYPE    168    181     98     20
D916V3, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VWCE MUTATED        3      2      7
  VWCE WILD-TYPE     84     78     93
D916V4, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VWCE MUTATED        1      5      7
  VWCE WILD-TYPE     88    155    131
D916V5, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VWCE MUTATED        7      5      1
  VWCE WILD-TYPE    175    128     71
D916V6, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            7            175
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWCE MUTATED        4      6      2      3
  VWCE WILD-TYPE    108     90     90    183
D916V7, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            4            108
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VWCE MUTATED        2      2      6      1      1      1      2
  VWCE WILD-TYPE     58     48     43     39     62    124     97
D916V8, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWCE MUTATED        8      3      1      3
  VWCE WILD-TYPE    122     75     67    193
D916V9, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            8            122
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VWCE MUTATED        0      4      0      2      4      3      1      0      1
  VWCE WILD-TYPE     40     58     28     78     65     45     42     28     73
D916V10, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            4             65
  CLUS_6            3             45
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWCE MUTATED        1      0      2      1
  VWCE WILD-TYPE     32     31     25     18
D916V11, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWCE MUTATED        0      0      3      1
  VWCE WILD-TYPE     54     10     21     21
D916V12, multiclass
        clus
vv       VWCE MUTATED VWCE WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(917) Variable = JMJD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD6 MUTATED        0      0      0      1
  JMJD6 WILD-TYPE     46     58     64     42
D917V1, multiclass
[1] "Remove cluster labels:" "JMJD6 MUTATED"         
clus
  JMJD6 MUTATED JMJD6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  JMJD6 MUTATED        0      1      0
  JMJD6 WILD-TYPE     51     82     77
D917V2, multiclass
[1] "Remove cluster labels:" "JMJD6 MUTATED"         
clus
  JMJD6 MUTATED JMJD6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"JMJD6 WILD-TYPE" "JMJD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD6 MUTATED        6      2      1      0
  JMJD6 WILD-TYPE    172    181    100     20
D917V3, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  JMJD6 MUTATED        2      1      4
  JMJD6 WILD-TYPE     85     79     96
D917V4, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  JMJD6 MUTATED        1      4      3
  JMJD6 WILD-TYPE     88    156    135
D917V5, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  JMJD6 MUTATED        5      2      1
  JMJD6 WILD-TYPE    177    131     71
D917V6, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD6 MUTATED        1      2      4      2
  JMJD6 WILD-TYPE    111     94     88    184
D917V7, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JMJD6 MUTATED        1      1      3      0      2      0      2
  JMJD6 WILD-TYPE     59     49     46     40     61    125     97
D917V8, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD6 MUTATED        7      0      0      2
  JMJD6 WILD-TYPE    123     78     68    194
D917V9, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  JMJD6 MUTATED        0      1      2      2      3      1      0      0
  JMJD6 WILD-TYPE     40     61     26     78     66     47     43     28
                 vv
clus              CLUS_9
  JMJD6 MUTATED        0
  JMJD6 WILD-TYPE     74
D917V10, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD6 MUTATED        1      1      0      1
  JMJD6 WILD-TYPE     32     30     27     18
D917V11, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD6 MUTATED        2      0      0      1
  JMJD6 WILD-TYPE     52     10     24     21
D917V12, multiclass
        clus
vv       JMJD6 MUTATED JMJD6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(918) Variable = AGFG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG2 MUTATED        2      0      0      2
  AGFG2 WILD-TYPE     44     58     64     41
D918V1, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG2 MUTATED        3      0      1
  AGFG2 WILD-TYPE     48     83     76
D918V2, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG2 MUTATED       10      2      0      0
  AGFG2 WILD-TYPE    168    181    101     20
D918V3, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG2 MUTATED        2      2      4
  AGFG2 WILD-TYPE     85     78     96
D918V4, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG2 MUTATED        4      2      4
  AGFG2 WILD-TYPE     85    158    134
D918V5, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGFG2 MUTATED        5      1      4
  AGFG2 WILD-TYPE    177    132     68
D918V6, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG2 MUTATED        1      4      3      4
  AGFG2 WILD-TYPE    111     92     89    182
D918V7, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGFG2 MUTATED        3      0      4      1      1      0      3
  AGFG2 WILD-TYPE     57     50     45     39     62    125     96
D918V8, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG2 MUTATED        5      2      0      5
  AGFG2 WILD-TYPE    125     76     68    191
D918V9, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGFG2 MUTATED        2      2      1      0      5      1      1      0
  AGFG2 WILD-TYPE     38     60     27     80     64     47     42     28
                 vv
clus              CLUS_9
  AGFG2 MUTATED        0
  AGFG2 WILD-TYPE     74
D918V10, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG2 MUTATED        1      1      0      1
  AGFG2 WILD-TYPE     32     30     27     18
D918V11, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGFG2 MUTATED        2      0      0      1
  AGFG2 WILD-TYPE     52     10     24     21
D918V12, multiclass
        clus
vv       AGFG2 MUTATED AGFG2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(919) Variable = VWA5A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA5A MUTATED        2      1      0      4
  VWA5A WILD-TYPE     44     57     64     39
D919V1, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA5A MUTATED        3      2      2
  VWA5A WILD-TYPE     48     81     75
D919V2, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA5A MUTATED       11      2      2      0
  VWA5A WILD-TYPE    167    181     99     20
D919V3, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA5A MUTATED        1      2      5
  VWA5A WILD-TYPE     86     78     95
D919V4, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA5A MUTATED        3      5      5
  VWA5A WILD-TYPE     86    155    133
D919V5, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VWA5A MUTATED        6      6      1
  VWA5A WILD-TYPE    176    127     71
D919V6, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA5A MUTATED        3      4      2      6
  VWA5A WILD-TYPE    109     92     90    180
D919V7, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VWA5A MUTATED        2      0      3      1      2      1      6
  VWA5A WILD-TYPE     58     50     46     39     61    124     93
D919V8, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA5A MUTATED        3      2      0     10
  VWA5A WILD-TYPE    127     76     68    186
D919V9, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VWA5A MUTATED        0      2      1      2      9      0      0      1
  VWA5A WILD-TYPE     40     60     27     78     60     48     43     27
                 vv
clus              CLUS_9
  VWA5A MUTATED        0
  VWA5A WILD-TYPE     74
D919V10, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             9              60
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA5A MUTATED        0      1      0      2
  VWA5A WILD-TYPE     33     30     27     17
D919V11, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA5A MUTATED        0      1      2      0
  VWA5A WILD-TYPE     54      9     22     22
D919V12, multiclass
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  CLUS_1             0              54
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(920) Variable = BAIAP2L1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAIAP2L1 MUTATED        2      0      0      0
  BAIAP2L1 WILD-TYPE     44     58     64     43
D920V1, multiclass
[1] "Remove cluster labels:" "BAIAP2L1 MUTATED"      
clus
  BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3968         TCGA-AA-3971 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3979         TCGA-AA-3980 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  BAIAP2L1 MUTATED        2      0      0
  BAIAP2L1 WILD-TYPE     49     83     77
D920V2, multiclass
[1] "Remove cluster labels:" "BAIAP2L1 MUTATED"      
clus
  BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3968         TCGA-AA-3971 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3979         TCGA-AA-3980 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"BAIAP2L1 WILD-TYPE" "BAIAP2L1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAIAP2L1 MUTATED       11      1      1      0
  BAIAP2L1 WILD-TYPE    167    182    100     20
D920V3, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1               11                167
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  BAIAP2L1 MUTATED        3      0      7
  BAIAP2L1 WILD-TYPE     84     80     93
D920V4, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  BAIAP2L1 MUTATED        1      3      5
  BAIAP2L1 WILD-TYPE     88    157    133
D920V5, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  BAIAP2L1 MUTATED        5      3      1
  BAIAP2L1 WILD-TYPE    177    130     71
D920V6, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAIAP2L1 MUTATED        0      6      4      3
  BAIAP2L1 WILD-TYPE    112     90     88    183
D920V7, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                6                 90
  CLUS_3                4                 88
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAIAP2L1 MUTATED        0      2      8      0      0      0      3
  BAIAP2L1 WILD-TYPE     60     48     41     40     63    125     96
D920V8, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                2                 48
  CLUS_3                8                 41
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAIAP2L1 MUTATED        6      1      0      6
  BAIAP2L1 WILD-TYPE    124     77     68    190
D920V9, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BAIAP2L1 MUTATED        0      2      0      1      7      0      2      0
  BAIAP2L1 WILD-TYPE     40     60     28     79     62     48     41     28
                    vv
clus                 CLUS_9
  BAIAP2L1 MUTATED        1
  BAIAP2L1 WILD-TYPE     73
D920V10, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAIAP2L1 MUTATED        1      0      0      3
  BAIAP2L1 WILD-TYPE     32     31     27     16
D920V11, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAIAP2L1 MUTATED        3      0      1      0
  BAIAP2L1 WILD-TYPE     51     10     23     22
D920V12, multiclass
        clus
vv       BAIAP2L1 MUTATED BAIAP2L1 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(921) Variable = BRD4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD4 MUTATED        3      0      1      1
  BRD4 WILD-TYPE     43     58     63     42
D921V1, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD4 MUTATED        4      1      0
  BRD4 WILD-TYPE     47     82     77
D921V2, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD4 MUTATED       14      2      2      2
  BRD4 WILD-TYPE    164    181     99     18
D921V3, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD4 MUTATED        6      2      8
  BRD4 WILD-TYPE     81     78     92
D921V4, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD4 MUTATED        2      5     11
  BRD4 WILD-TYPE     87    155    127
D921V5, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD4 MUTATED       10      6      2
  BRD4 WILD-TYPE    172    127     70
D921V6, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD4 MUTATED        3      6      5      7
  BRD4 WILD-TYPE    109     90     87    179
D921V7, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            5             87
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRD4 MUTATED        2      2      8      2      0      2      5
  BRD4 WILD-TYPE     58     48     41     38     63    123     94
D921V8, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            8             41
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD4 MUTATED        9      3      1      8
  BRD4 WILD-TYPE    121     75     67    188
D921V9, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BRD4 MUTATED        1      5      1      5      5      0      2      1      1
  BRD4 WILD-TYPE     39     57     27     75     64     48     41     27     73
D921V10, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            5             57
  CLUS_3            1             27
  CLUS_4            5             75
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD4 MUTATED        1      0      2      3
  BRD4 WILD-TYPE     32     31     25     16
D921V11, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD4 MUTATED        3      0      1      2
  BRD4 WILD-TYPE     51     10     23     20
D921V12, multiclass
        clus
vv       BRD4 MUTATED BRD4 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(922) Variable = GUCY1A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY1A3 MUTATED        4      1      2      4
  GUCY1A3 WILD-TYPE     42     57     62     39
D922V1, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               1                57
  CLUS_3               2                62
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GUCY1A3 MUTATED        5      1      5
  GUCY1A3 WILD-TYPE     46     82     72
D922V2, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               1                82
  CLUS_3               5                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY1A3 MUTATED       15      7      1      3
  GUCY1A3 WILD-TYPE    163    176    100     17
D922V3, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               7               176
  CLUS_3               1               100
  CLUS_4               3                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GUCY1A3 MUTATED        3      5      6
  GUCY1A3 WILD-TYPE     84     75     94
D922V4, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               5                75
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GUCY1A3 MUTATED        3     12      6
  GUCY1A3 WILD-TYPE     86    148    132
D922V5, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               3                86
  CLUS_2              12               148
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GUCY1A3 MUTATED        6     11      4
  GUCY1A3 WILD-TYPE    176    122     68
D922V6, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               6               176
  CLUS_2              11               122
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY1A3 MUTATED        5      8      2     11
  GUCY1A3 WILD-TYPE    107     88     90    175
D922V7, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               5               107
  CLUS_2               8                88
  CLUS_3               2                90
  CLUS_4              11               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GUCY1A3 MUTATED        4      2      5      1      3      1     10
  GUCY1A3 WILD-TYPE     56     48     44     39     60    124     89
D922V8, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7              10                89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY1A3 MUTATED        9      3      2     11
  GUCY1A3 WILD-TYPE    121     75     66    185
D922V9, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               3                75
  CLUS_3               2                66
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GUCY1A3 MUTATED        1      2      3      3     11      2      0      0
  GUCY1A3 WILD-TYPE     39     60     25     77     58     46     43     28
                   vv
clus                CLUS_9
  GUCY1A3 MUTATED        3
  GUCY1A3 WILD-TYPE     71
D922V10, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               3                25
  CLUS_4               3                77
  CLUS_5              11                58
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY1A3 MUTATED        2      1      1      3
  GUCY1A3 WILD-TYPE     31     30     26     16
D922V11, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY1A3 MUTATED        3      1      2      1
  GUCY1A3 WILD-TYPE     51      9     22     21
D922V12, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(923) Variable = MCF2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2L2 MUTATED        2      1      1      3
  MCF2L2 WILD-TYPE     44     57     63     40
D923V1, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCF2L2 MUTATED        2      3      2
  MCF2L2 WILD-TYPE     49     80     75
D923V2, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2L2 MUTATED       19      3      1      0
  MCF2L2 WILD-TYPE    159    180    100     20
D923V3, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCF2L2 MUTATED        9      0      5
  MCF2L2 WILD-TYPE     78     80     95
D923V4, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCF2L2 MUTATED        0      8      8
  MCF2L2 WILD-TYPE     89    152    130
D923V5, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              8              152
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCF2L2 MUTATED        8      7      1
  MCF2L2 WILD-TYPE    174    126     71
D923V6, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2L2 MUTATED        2      5      7      9
  MCF2L2 WILD-TYPE    110     91     85    177
D923V7, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              7               85
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MCF2L2 MUTATED        3      2      7      0      2      3      6
  MCF2L2 WILD-TYPE     57     48     42     40     61    122     93
D923V8, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2L2 MUTATED        7      3      1     11
  MCF2L2 WILD-TYPE    123     75     67    185
D923V9, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MCF2L2 MUTATED        1      4      1      3      8      1      0      0
  MCF2L2 WILD-TYPE     39     58     27     77     61     47     43     28
                  vv
clus               CLUS_9
  MCF2L2 MUTATED        4
  MCF2L2 WILD-TYPE     70
D923V10, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              8               61
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2L2 MUTATED        1      0      0      3
  MCF2L2 WILD-TYPE     32     31     27     16
D923V11, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2L2 MUTATED        3      0      1      0
  MCF2L2 WILD-TYPE     51     10     23     22
D923V12, multiclass
        clus
vv       MCF2L2 MUTATED MCF2L2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(924) Variable = DNAH17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH17 MUTATED        0      0      1      0
  DNAH17 WILD-TYPE     46     58     63     43
D924V1, multiclass
[1] "Remove cluster labels:" "DNAH17 MUTATED"        
clus
  DNAH17 MUTATED DNAH17 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH17 MUTATED        0      1      0
  DNAH17 WILD-TYPE     51     82     77
D924V2, multiclass
[1] "Remove cluster labels:" "DNAH17 MUTATED"        
clus
  DNAH17 MUTATED DNAH17 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"DNAH17 WILD-TYPE" "DNAH17 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH17 MUTATED       23      7      2      0
  DNAH17 WILD-TYPE    155    176     99     20
D924V3, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1             23              155
  CLUS_2              7              176
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH17 MUTATED       11      5     15
  DNAH17 WILD-TYPE     76     75     85
D924V4, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1             11               76
  CLUS_2              5               75
  CLUS_3             15               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH17 MUTATED        6      5     17
  DNAH17 WILD-TYPE     83    155    121
D924V5, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              5              155
  CLUS_3             17              121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAH17 MUTATED       18      4      6
  DNAH17 WILD-TYPE    164    129     66
D924V6, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1             18              164
  CLUS_2              4              129
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH17 MUTATED        7     11     11      3
  DNAH17 WILD-TYPE    105     85     81    183
D924V7, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1              7              105
  CLUS_2             11               85
  CLUS_3             11               81
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH17 MUTATED        4      7     11      1      6      2      1
  DNAH17 WILD-TYPE     56     43     38     39     57    123     98
D924V8, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              7               43
  CLUS_3             11               38
  CLUS_4              1               39
  CLUS_5              6               57
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH17 MUTATED       14     10      2      6
  DNAH17 WILD-TYPE    116     68     66    190
D924V9, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1             14              116
  CLUS_2             10               68
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAH17 MUTATED        4      9      3      4      6      1      2      0
  DNAH17 WILD-TYPE     36     53     25     76     63     47     41     28
                  vv
clus               CLUS_9
  DNAH17 MUTATED        3
  DNAH17 WILD-TYPE     71
D924V10, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              9               53
  CLUS_3              3               25
  CLUS_4              4               76
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH17 MUTATED        1      2      1      6
  DNAH17 WILD-TYPE     32     29     26     13
D924V11, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              6               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH17 MUTATED        6      1      2      1
  DNAH17 WILD-TYPE     48      9     22     21
D924V12, multiclass
        clus
vv       DNAH17 MUTATED DNAH17 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(925) Variable = ANKRD17 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        3      1      0      6
  ANKRD17 WILD-TYPE     43     57     64     37
D925V1, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               6                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        6      2      2
  ANKRD17 WILD-TYPE     45     81     75
D925V2, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED       23      5      2      0
  ANKRD17 WILD-TYPE    155    178     99     20
D925V3, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1              23               155
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        7      2     10
  ANKRD17 WILD-TYPE     80     78     90
D925V4, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               2                78
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED        4     11     13
  ANKRD17 WILD-TYPE     85    149    125
D925V5, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               4                85
  CLUS_2              11               149
  CLUS_3              13               125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD17 MUTATED       17      9      2
  ANKRD17 WILD-TYPE    165    124     70
D925V6, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1              17               165
  CLUS_2               9               124
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        3     10      8      9
  ANKRD17 WILD-TYPE    109     86     84    177
D925V7, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               3               109
  CLUS_2              10                86
  CLUS_3               8                84
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD17 MUTATED        3      3     11      0      2      1     10
  ANKRD17 WILD-TYPE     57     47     38     40     61    124     89
D925V8, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               3                47
  CLUS_3              11                38
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7              10                89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED       10      5      0     13
  ANKRD17 WILD-TYPE    120     73     68    183
D925V9, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1              10               120
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4              13               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD17 MUTATED        1      7      1      2     13      0      0      1
  ANKRD17 WILD-TYPE     39     55     27     78     56     48     43     27
                   vv
clus                CLUS_9
  ANKRD17 MUTATED        3
  ANKRD17 WILD-TYPE     71
D925V10, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               7                55
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5              13                56
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        1      1      0      5
  ANKRD17 WILD-TYPE     32     30     27     14
D925V11, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD17 MUTATED        4      0      3      0
  ANKRD17 WILD-TYPE     50     10     21     22
D925V12, multiclass
        clus
vv       ANKRD17 MUTATED ANKRD17 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(926) Variable = RAB42 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        0      0      0      0
  RAB42 WILD-TYPE     46     58     64     43
D926V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB42 MUTATED        0      0      0
  RAB42 WILD-TYPE     51     83     77
D926V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        4      0      0      0
  RAB42 WILD-TYPE    174    183    101     20
D926V3, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB42 MUTATED        2      0      1
  RAB42 WILD-TYPE     85     80     99
D926V4, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB42 MUTATED        1      0      2
  RAB42 WILD-TYPE     88    160    136
D926V5, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB42 MUTATED        2      1      0
  RAB42 WILD-TYPE    180    132     72
D926V6, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        0      2      1      1
  RAB42 WILD-TYPE    112     94     91    185
D926V7, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB42 MUTATED        0      1      2      0      0      0      1
  RAB42 WILD-TYPE     60     49     47     40     63    125     98
D926V8, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        2      1      0      1
  RAB42 WILD-TYPE    128     77     68    195
D926V9, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB42 MUTATED        0      1      1      0      2      0      0      0
  RAB42 WILD-TYPE     40     61     27     80     67     48     43     28
                 vv
clus              CLUS_9
  RAB42 MUTATED        0
  RAB42 WILD-TYPE     74
D926V10, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        1      0      0      0
  RAB42 WILD-TYPE     32     31     27     19
D926V11, multiclass
[1] "Remove cluster labels:" "RAB42 MUTATED"         
clus
  RAB42 MUTATED RAB42 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-G5-6641 
"RAB42 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        1      0      0      0
  RAB42 WILD-TYPE     53     10     24     22
D926V12, multiclass
[1] "Remove cluster labels:" "RAB42 MUTATED"         
clus
  RAB42 MUTATED RAB42 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" "RAB42 WILD-TYPE" 
     TCGA-G5-6641 
"RAB42 WILD-TYPE" 

Clustering(927) Variable = PSMA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMA2 MUTATED        1      0      0      0
  PSMA2 WILD-TYPE     45     58     64     43
D927V1, multiclass
[1] "Remove cluster labels:" "PSMA2 MUTATED"         
clus
  PSMA2 MUTATED PSMA2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMA2 MUTATED        1      0      0
  PSMA2 WILD-TYPE     50     83     77
D927V2, multiclass
[1] "Remove cluster labels:" "PSMA2 MUTATED"         
clus
  PSMA2 MUTATED PSMA2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMA2 MUTATED        6      0      0      0
  PSMA2 WILD-TYPE    172    183    101     20
D927V3, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMA2 MUTATED        0      0      5
  PSMA2 WILD-TYPE     87     80     95
D927V4, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMA2 MUTATED        2      0      2
  PSMA2 WILD-TYPE     87    160    136
D927V5, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0             160
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMA2 MUTATED        2      1      1
  PSMA2 WILD-TYPE    180    132     71
D927V6, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMA2 MUTATED        0      3      2      1
  PSMA2 WILD-TYPE    112     93     90    185
D927V7, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMA2 MUTATED        0      0      3      2      0      0      1
  PSMA2 WILD-TYPE     60     50     46     38     63    125     98
D927V8, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMA2 MUTATED        3      1      0      1
  PSMA2 WILD-TYPE    127     77     68    195
D927V9, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PSMA2 MUTATED        2      1      0      0      2      0      0      0
  PSMA2 WILD-TYPE     38     61     28     80     67     48     43     28
                 vv
clus              CLUS_9
  PSMA2 MUTATED        0
  PSMA2 WILD-TYPE     74
D927V10, multiclass
        clus
vv       PSMA2 MUTATED PSMA2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMA2 MUTATED        0      0      0      1
  PSMA2 WILD-TYPE     33     31     27     18
D927V11, multiclass
[1] "Remove cluster labels:" "PSMA2 MUTATED"         
clus
  PSMA2 MUTATED PSMA2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-G5-6641 
"PSMA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMA2 MUTATED        1      0      0      0
  PSMA2 WILD-TYPE     53     10     24     22
D927V12, multiclass
[1] "Remove cluster labels:" "PSMA2 MUTATED"         
clus
  PSMA2 MUTATED PSMA2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" "PSMA2 WILD-TYPE" 
     TCGA-G5-6641 
"PSMA2 WILD-TYPE" 

Clustering(928) Variable = ZKSCAN1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN1 MUTATED        2      0      0      3
  ZKSCAN1 WILD-TYPE     44     58     64     40
D928V1, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN1 MUTATED        4      0      1
  ZKSCAN1 WILD-TYPE     47     83     76
D928V2, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN1 MUTATED        8      0      0      0
  ZKSCAN1 WILD-TYPE    170    183    101     20
D928V3, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN1 MUTATED        0      0      3
  ZKSCAN1 WILD-TYPE     87     80     97
D928V4, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN1 MUTATED        4      1      1
  ZKSCAN1 WILD-TYPE     85    159    137
D928V5, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               1               159
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN1 MUTATED        3      0      3
  ZKSCAN1 WILD-TYPE    179    133     69
D928V6, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               0               133
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN1 MUTATED        0      2      1      5
  ZKSCAN1 WILD-TYPE    112     94     91    181
D928V7, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZKSCAN1 MUTATED        0      1      2      0      0      1      4
  ZKSCAN1 WILD-TYPE     60     49     47     40     63    124     95
D928V8, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN1 MUTATED        2      0      0      6
  ZKSCAN1 WILD-TYPE    128     78     68    190
D928V9, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZKSCAN1 MUTATED        0      1      2      0      4      1      0      0
  ZKSCAN1 WILD-TYPE     40     61     26     80     65     47     43     28
                   vv
clus                CLUS_9
  ZKSCAN1 MUTATED        0
  ZKSCAN1 WILD-TYPE     74
D928V10, multiclass
        clus
vv       ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN1 MUTATED        0      0      0      1
  ZKSCAN1 WILD-TYPE     33     31     27     18
D928V11, multiclass
[1] "Remove cluster labels:" "ZKSCAN1 MUTATED"       
clus
  ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-G5-6641 
"ZKSCAN1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN1 MUTATED        1      0      0      0
  ZKSCAN1 WILD-TYPE     53     10     24     22
D928V12, multiclass
[1] "Remove cluster labels:" "ZKSCAN1 MUTATED"       
clus
  ZKSCAN1 MUTATED ZKSCAN1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" "ZKSCAN1 WILD-TYPE" 
       TCGA-G5-6641 
"ZKSCAN1 WILD-TYPE" 

Clustering(929) Variable = SLC27A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A2 MUTATED        2      0      0      1
  SLC27A2 WILD-TYPE     44     58     64     42
D929V1, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A2 MUTATED        1      1      1
  SLC27A2 WILD-TYPE     50     82     76
D929V2, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A2 MUTATED        5      1      1      0
  SLC27A2 WILD-TYPE    173    182    100     20
D929V3, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A2 MUTATED        3      1      0
  SLC27A2 WILD-TYPE     84     79    100
D929V4, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A2 MUTATED        1      1      3
  SLC27A2 WILD-TYPE     88    159    135
D929V5, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A2 MUTATED        3      2      0
  SLC27A2 WILD-TYPE    179    131     72
D929V6, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A2 MUTATED        1      1      1      4
  SLC27A2 WILD-TYPE    111     95     91    182
D929V7, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC27A2 MUTATED        1      0      1      0      1      1      3
  SLC27A2 WILD-TYPE     59     50     48     40     62    124     96
D929V8, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A2 MUTATED        2      1      0      4
  SLC27A2 WILD-TYPE    128     77     68    192
D929V9, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC27A2 MUTATED        0      2      1      1      1      1      0      0
  SLC27A2 WILD-TYPE     40     60     27     79     68     47     43     28
                   vv
clus                CLUS_9
  SLC27A2 MUTATED        1
  SLC27A2 WILD-TYPE     73
D929V10, multiclass
        clus
vv       SLC27A2 MUTATED SLC27A2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A2 MUTATED        0      1      0      1
  SLC27A2 WILD-TYPE     33     30     27     18
D929V11, multiclass
[1] "Remove cluster labels:" "SLC27A2 MUTATED"       
clus
  SLC27A2 MUTATED SLC27A2 WILD-TYPE 
                2               108 
       TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A2 MUTATED        1      0      0      1
  SLC27A2 WILD-TYPE     53     10     24     21
D929V12, multiclass
[1] "Remove cluster labels:" "SLC27A2 MUTATED"       
clus
  SLC27A2 MUTATED SLC27A2 WILD-TYPE 
                2               108 
       TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" "SLC27A2 WILD-TYPE" 

Clustering(930) Variable = OR6C75 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C75 MUTATED        2      0      0      0
  OR6C75 WILD-TYPE     44     58     64     43
D930V1, multiclass
[1] "Remove cluster labels:" "OR6C75 MUTATED"        
clus
  OR6C75 MUTATED OR6C75 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AY-4071 
"OR6C75 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C75 MUTATED        2      0      0
  OR6C75 WILD-TYPE     49     83     77
D930V2, multiclass
[1] "Remove cluster labels:" "OR6C75 MUTATED"        
clus
  OR6C75 MUTATED OR6C75 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AY-4071 
"OR6C75 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C75 MUTATED        6      2      0      0
  OR6C75 WILD-TYPE    172    181    101     20
D930V3, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C75 MUTATED        3      2      1
  OR6C75 WILD-TYPE     84     78     99
D930V4, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C75 MUTATED        0      3      4
  OR6C75 WILD-TYPE     89    157    134
D930V5, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR6C75 MUTATED        3      1      3
  OR6C75 WILD-TYPE    179    132     69
D930V6, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C75 MUTATED        1      3      2      2
  OR6C75 WILD-TYPE    111     93     90    184
D930V7, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR6C75 MUTATED        1      2      2      0      1      0      2
  OR6C75 WILD-TYPE     59     48     47     40     62    125     97
D930V8, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C75 MUTATED        3      2      0      3
  OR6C75 WILD-TYPE    127     76     68    193
D930V9, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR6C75 MUTATED        1      2      0      0      2      0      1      1
  OR6C75 WILD-TYPE     39     60     28     80     67     48     42     27
                  vv
clus               CLUS_9
  OR6C75 MUTATED        1
  OR6C75 WILD-TYPE     73
D930V10, multiclass
        clus
vv       OR6C75 MUTATED OR6C75 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C75 MUTATED        0      0      0      1
  OR6C75 WILD-TYPE     33     31     27     18
D930V11, multiclass
[1] "Remove cluster labels:" "OR6C75 MUTATED"        
clus
  OR6C75 MUTATED OR6C75 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-G5-6641 
"OR6C75 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C75 MUTATED        1      0      0      0
  OR6C75 WILD-TYPE     53     10     24     22
D930V12, multiclass
[1] "Remove cluster labels:" "OR6C75 MUTATED"        
clus
  OR6C75 MUTATED OR6C75 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" "OR6C75 WILD-TYPE" 
      TCGA-G5-6641 
"OR6C75 WILD-TYPE" 

Clustering(931) Variable = TRIM54 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM54 MUTATED        2      0      0      0
  TRIM54 WILD-TYPE     44     58     64     43
D931V1, multiclass
[1] "Remove cluster labels:" "TRIM54 MUTATED"        
clus
  TRIM54 MUTATED TRIM54 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AY-4071 
"TRIM54 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM54 MUTATED        1      1      0
  TRIM54 WILD-TYPE     50     82     77
D931V2, multiclass
[1] "Remove cluster labels:" "TRIM54 MUTATED"        
clus
  TRIM54 MUTATED TRIM54 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" "TRIM54 WILD-TYPE" 
      TCGA-AY-4071 
"TRIM54 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM54 MUTATED        4      5      0      0
  TRIM54 WILD-TYPE    174    178    101     20
D931V3, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              5              178
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM54 MUTATED        2      2      3
  TRIM54 WILD-TYPE     85     78     97
D931V4, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM54 MUTATED        0      6      2
  TRIM54 WILD-TYPE     89    154    136
D931V5, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM54 MUTATED        2      4      2
  TRIM54 WILD-TYPE    180    129     70
D931V6, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM54 MUTATED        5      2      0      2
  TRIM54 WILD-TYPE    107     94     92    184
D931V7, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM54 MUTATED        3      1      1      1      1      1      1
  TRIM54 WILD-TYPE     57     49     48     39     62    124     98
D931V8, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM54 MUTATED        3      3      1      1
  TRIM54 WILD-TYPE    127     75     67    195
D931V9, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM54 MUTATED        1      0      0      2      1      3      1      0
  TRIM54 WILD-TYPE     39     62     28     78     68     45     42     28
                  vv
clus               CLUS_9
  TRIM54 MUTATED        0
  TRIM54 WILD-TYPE     74
D931V10, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              3               45
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM54 MUTATED        0      1      0      2
  TRIM54 WILD-TYPE     33     30     27     17
D931V11, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM54 MUTATED        0      0      1      2
  TRIM54 WILD-TYPE     54     10     23     20
D931V12, multiclass
        clus
vv       TRIM54 MUTATED TRIM54 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(932) Variable = ERCC6L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6L MUTATED        5      0      0      2
  ERCC6L WILD-TYPE     41     58     64     41
D932V1, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERCC6L MUTATED        3      2      2
  ERCC6L WILD-TYPE     48     81     75
D932V2, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6L MUTATED       14      1      1      0
  ERCC6L WILD-TYPE    164    182    100     20
D932V3, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1             14              164
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERCC6L MUTATED        3      1      5
  ERCC6L WILD-TYPE     84     79     95
D932V4, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERCC6L MUTATED        2      3      6
  ERCC6L WILD-TYPE     87    157    132
D932V5, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERCC6L MUTATED        6      3      2
  ERCC6L WILD-TYPE    176    130     70
D932V6, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6L MUTATED        1      4      4      7
  ERCC6L WILD-TYPE    111     92     88    179
D932V7, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERCC6L MUTATED        1      2      6      0      1      2      4
  ERCC6L WILD-TYPE     59     48     43     40     62    123     95
D932V8, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6L MUTATED        4      4      0      8
  ERCC6L WILD-TYPE    126     74     68    188
D932V9, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              4              126
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERCC6L MUTATED        2      3      2      1      6      0      1      0
  ERCC6L WILD-TYPE     38     59     26     79     63     48     42     28
                  vv
clus               CLUS_9
  ERCC6L MUTATED        1
  ERCC6L WILD-TYPE     73
D932V10, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6L MUTATED        1      0      0      2
  ERCC6L WILD-TYPE     32     31     27     17
D932V11, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC6L MUTATED        2      0      1      0
  ERCC6L WILD-TYPE     52     10     23     22
D932V12, multiclass
        clus
vv       ERCC6L MUTATED ERCC6L WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(933) Variable = CXORF38 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF38 MUTATED        0      0      0      0
  CXORF38 WILD-TYPE     46     58     64     43
D933V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF38 MUTATED        0      0      0
  CXORF38 WILD-TYPE     51     83     77
D933V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF38 MUTATED        4      0      2      0
  CXORF38 WILD-TYPE    174    183     99     20
D933V3, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               0               183
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF38 MUTATED        4      0      2
  CXORF38 WILD-TYPE     83     80     98
D933V4, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF38 MUTATED        1      2      3
  CXORF38 WILD-TYPE     88    158    135
D933V5, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF38 MUTATED        4      1      1
  CXORF38 WILD-TYPE    178    132     71
D933V6, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF38 MUTATED        0      4      2      0
  CXORF38 WILD-TYPE    112     92     90    186
D933V7, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               2                90
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CXORF38 MUTATED        0      1      3      0      2      0      0
  CXORF38 WILD-TYPE     60     49     46     40     61    125     99
D933V8, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF38 MUTATED        3      1      0      2
  CXORF38 WILD-TYPE    127     77     68    194
D933V9, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CXORF38 MUTATED        2      0      0      1      2      0      0      0
  CXORF38 WILD-TYPE     38     62     28     79     67     48     43     28
                   vv
clus                CLUS_9
  CXORF38 MUTATED        1
  CXORF38 WILD-TYPE     73
D933V10, multiclass
        clus
vv       CXORF38 MUTATED CXORF38 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF38 MUTATED        0      1      0      1
  CXORF38 WILD-TYPE     33     30     27     18
D933V11, multiclass
[1] "Remove cluster labels:" "CXORF38 MUTATED"       
clus
  CXORF38 MUTATED CXORF38 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6811 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF38 MUTATED        1      0      1      0
  CXORF38 WILD-TYPE     53     10     23     22
D933V12, multiclass
[1] "Remove cluster labels:" "CXORF38 MUTATED"       
clus
  CXORF38 MUTATED CXORF38 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6811 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" "CXORF38 WILD-TYPE" 

Clustering(934) Variable = C12ORF49 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF49 MUTATED        0      0      0      0
  C12ORF49 WILD-TYPE     46     58     64     43
D934V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF49 MUTATED        0      0      0
  C12ORF49 WILD-TYPE     51     83     77
D934V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF49 MUTATED        2      2      0      0
  C12ORF49 WILD-TYPE    176    181    101     20
D934V3, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                2                176
  CLUS_2                2                181
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF49 MUTATED        0      1      3
  C12ORF49 WILD-TYPE     87     79     97
D934V4, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF49 MUTATED        0      2      1
  C12ORF49 WILD-TYPE     89    158    137
D934V5, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                1                137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF49 MUTATED        0      3      0
  C12ORF49 WILD-TYPE    182    130     72
D934V6, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                0                182
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF49 MUTATED        1      3      0      0
  C12ORF49 WILD-TYPE    111     93     92    186
D934V7, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                3                 93
  CLUS_3                0                 92
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C12ORF49 MUTATED        0      1      3      0      0      0      0
  C12ORF49 WILD-TYPE     60     49     46     40     63    125     99
D934V8, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF49 MUTATED        3      0      1      0
  C12ORF49 WILD-TYPE    127     78     67    196
D934V9, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                0                 78
  CLUS_3                1                 67
  CLUS_4                0                196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C12ORF49 MUTATED        0      0      0      0      3      0      1      0
  C12ORF49 WILD-TYPE     40     62     28     80     66     48     42     28
                    vv
clus                 CLUS_9
  C12ORF49 MUTATED        0
  C12ORF49 WILD-TYPE     74
D934V10, multiclass
        clus
vv       C12ORF49 MUTATED C12ORF49 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                0                 62
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF49 MUTATED        0      0      0      2
  C12ORF49 WILD-TYPE     33     31     27     17
D934V11, multiclass
[1] "Remove cluster labels:" "C12ORF49 MUTATED"      
clus
  C12ORF49 MUTATED C12ORF49 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF49 MUTATED        0      0      2      0
  C12ORF49 WILD-TYPE     54     10     22     22
D934V12, multiclass
[1] "Remove cluster labels:" "C12ORF49 MUTATED"      
clus
  C12ORF49 MUTATED C12ORF49 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" "C12ORF49 WILD-TYPE" 

Clustering(935) Variable = VEZF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        0      0      0      0
  VEZF1 WILD-TYPE     46     58     64     43
D935V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        0      0      0
  VEZF1 WILD-TYPE     51     83     77
D935V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        6      0      1      0
  VEZF1 WILD-TYPE    172    183    100     20
D935V3, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        4      0      3
  VEZF1 WILD-TYPE     83     80     97
D935V4, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        0      0      6
  VEZF1 WILD-TYPE     89    160    132
D935V5, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             0             160
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        5      1      0
  VEZF1 WILD-TYPE    177    132     72
D935V6, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        1      3      3      0
  VEZF1 WILD-TYPE    111     93     89    186
D935V7, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VEZF1 MUTATED        0      0      6      0      1      0      0
  VEZF1 WILD-TYPE     60     50     43     40     62    125     99
D935V8, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        2      3      1      1
  VEZF1 WILD-TYPE    128     75     67    195
D935V9, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VEZF1 MUTATED        0      4      0      0      2      0      1      0
  VEZF1 WILD-TYPE     40     58     28     80     67     48     42     28
                 vv
clus              CLUS_9
  VEZF1 MUTATED        0
  VEZF1 WILD-TYPE     74
D935V10, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        0      0      1      0
  VEZF1 WILD-TYPE     33     31     26     19
D935V11, multiclass
[1] "Remove cluster labels:" "VEZF1 MUTATED"         
clus
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-G5-6641 
"VEZF1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        0      0      0      1
  VEZF1 WILD-TYPE     54     10     24     21
D935V12, multiclass
[1] "Remove cluster labels:" "VEZF1 MUTATED"         
clus
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-G5-6641 
"VEZF1 WILD-TYPE" 

Clustering(936) Variable = DNAH6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        1      0      0      2
  DNAH6 WILD-TYPE     45     58     64     41
D936V1, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED        1      0      2
  DNAH6 WILD-TYPE     50     83     75
D936V2, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED       21      2      1      0
  DNAH6 WILD-TYPE    157    181    100     20
D936V3, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED       12      0      9
  DNAH6 WILD-TYPE     75     80     91
D936V4, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1            12              75
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED        4      4     13
  DNAH6 WILD-TYPE     85    156    125
D936V5, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             156
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH6 MUTATED       12      7      2
  DNAH6 WILD-TYPE    170    126     70
D936V6, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1            12             170
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        3      9      8      4
  DNAH6 WILD-TYPE    109     87     84    182
D936V7, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             9              87
  CLUS_3             8              84
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAH6 MUTATED        1      3     12      1      4      0      3
  DNAH6 WILD-TYPE     59     47     37     39     59    125     96
D936V8, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3            12              37
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        8      8      1      7
  DNAH6 WILD-TYPE    122     70     67    189
D936V9, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             8              70
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAH6 MUTATED        2      8      2      0      8      0      1      1
  DNAH6 WILD-TYPE     38     54     26     80     61     48     42     27
                 vv
clus              CLUS_9
  DNAH6 MUTATED        2
  DNAH6 WILD-TYPE     72
D936V10, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             8              54
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        3      0      1      4
  DNAH6 WILD-TYPE     30     31     26     15
D936V11, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH6 MUTATED        5      0      2      1
  DNAH6 WILD-TYPE     49     10     22     21
D936V12, multiclass
        clus
vv       DNAH6 MUTATED DNAH6 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(937) Variable = ATP12A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP12A MUTATED        4      0      2      5
  ATP12A WILD-TYPE     42     58     62     38
D937V1, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP12A MUTATED        6      2      3
  ATP12A WILD-TYPE     45     81     74
D937V2, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              6               45
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP12A MUTATED       19      7      2      2
  ATP12A WILD-TYPE    159    176     99     18
D937V3, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1             19              159
  CLUS_2              7              176
  CLUS_3              2               99
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP12A MUTATED        6      5      7
  ATP12A WILD-TYPE     81     75     93
D937V4, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              6               81
  CLUS_2              5               75
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP12A MUTATED        4      9     10
  ATP12A WILD-TYPE     85    151    128
D937V5, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              4               85
  CLUS_2              9              151
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP12A MUTATED       10      8      5
  ATP12A WILD-TYPE    172    125     67
D937V6, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1             10              172
  CLUS_2              8              125
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP12A MUTATED        6      7      5     12
  ATP12A WILD-TYPE    106     89     87    174
D937V7, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              6              106
  CLUS_2              7               89
  CLUS_3              5               87
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP12A MUTATED        6      3      8      0      2      1     10
  ATP12A WILD-TYPE     54     47     41     40     61    124     89
D937V8, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              6               54
  CLUS_2              3               47
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP12A MUTATED       11      4      3     11
  ATP12A WILD-TYPE    119     74     65    185
D937V9, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1             11              119
  CLUS_2              4               74
  CLUS_3              3               65
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP12A MUTATED        1      4      2      1     11      3      5      1
  ATP12A WILD-TYPE     39     58     26     79     58     45     38     27
                  vv
clus               CLUS_9
  ATP12A MUTATED        1
  ATP12A WILD-TYPE     73
D937V10, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5             11               58
  CLUS_6              3               45
  CLUS_7              5               38
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP12A MUTATED        3      0      1      2
  ATP12A WILD-TYPE     30     31     26     17
D937V11, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP12A MUTATED        4      0      2      0
  ATP12A WILD-TYPE     50     10     22     22
D937V12, multiclass
        clus
vv       ATP12A MUTATED ATP12A WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(938) Variable = SGK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        0      0      0      2
  SGK3 WILD-TYPE     46     58     64     41
D938V1, multiclass
[1] "Remove cluster labels:" "SGK3 MUTATED"          
clus
  SGK3 MUTATED SGK3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3909     TCGA-AG-3999 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AY-4071 
"SGK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        0      0      2
  SGK3 WILD-TYPE     51     83     75
D938V2, multiclass
[1] "Remove cluster labels:" "SGK3 MUTATED"          
clus
  SGK3 MUTATED SGK3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3909     TCGA-AG-3999 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AY-4071 
"SGK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        5      2      1      2
  SGK3 WILD-TYPE    173    181    100     18
D938V3, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        4      1      3
  SGK3 WILD-TYPE     83     79     97
D938V4, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        0      6      3
  SGK3 WILD-TYPE     89    154    135
D938V5, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        3      6      0
  SGK3 WILD-TYPE    179    127     72
D938V6, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        2      2      4      2
  SGK3 WILD-TYPE    110     94     88    184
D938V7, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SGK3 MUTATED        3      1      1      1      3      0      1
  SGK3 WILD-TYPE     57     49     48     39     60    125     98
D938V8, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        2      4      1      3
  SGK3 WILD-TYPE    128     74     67    193
D938V9, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SGK3 MUTATED        2      3      0      0      2      1      0      0      2
  SGK3 WILD-TYPE     38     59     28     80     67     47     43     28     72
D938V10, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        1      1      0      0
  SGK3 WILD-TYPE     32     30     27     19
D938V11, multiclass
[1] "Remove cluster labels:" "SGK3 MUTATED"          
clus
  SGK3 MUTATED SGK3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-CA-6718     TCGA-CA-6719 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        2      0      0      0
  SGK3 WILD-TYPE     52     10     24     22
D938V12, multiclass
[1] "Remove cluster labels:" "SGK3 MUTATED"          
clus
  SGK3 MUTATED SGK3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-CA-6718     TCGA-CA-6719 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 

Clustering(939) Variable = ODAM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODAM MUTATED        1      0      0      0
  ODAM WILD-TYPE     45     58     64     43
D939V1, multiclass
[1] "Remove cluster labels:" "ODAM MUTATED"          
clus
  ODAM MUTATED ODAM WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODAM MUTATED        1      0      0
  ODAM WILD-TYPE     50     83     77
D939V2, multiclass
[1] "Remove cluster labels:" "ODAM MUTATED"          
clus
  ODAM MUTATED ODAM WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODAM MUTATED        1      2      3      0
  ODAM WILD-TYPE    177    181     98     20
D939V3, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            1            177
  CLUS_2            2            181
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODAM MUTATED        1      1      3
  ODAM WILD-TYPE     86     79     97
D939V4, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODAM MUTATED        1      2      1
  ODAM WILD-TYPE     88    158    137
D939V5, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ODAM MUTATED        1      2      1
  ODAM WILD-TYPE    181    131     71
D939V6, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODAM MUTATED        2      2      1      1
  ODAM WILD-TYPE    110     94     91    185
D939V7, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ODAM MUTATED        2      2      0      0      1      0      1
  ODAM WILD-TYPE     58     48     49     40     62    125     98
D939V8, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODAM MUTATED        2      0      3      1
  ODAM WILD-TYPE    128     78     65    195
D939V9, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            3             65
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ODAM MUTATED        0      0      0      2      1      0      3      0      0
  ODAM WILD-TYPE     40     62     28     78     68     48     40     28     74
D939V10, multiclass
        clus
vv       ODAM MUTATED ODAM WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODAM MUTATED        0      0      2      0
  ODAM WILD-TYPE     33     31     25     19
D939V11, multiclass
[1] "Remove cluster labels:" "ODAM MUTATED"          
clus
  ODAM MUTATED ODAM WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1H8 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ODAM MUTATED        0      0      2      0
  ODAM WILD-TYPE     54     10     22     22
D939V12, multiclass
[1] "Remove cluster labels:" "ODAM MUTATED"          
clus
  ODAM MUTATED ODAM WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1H8 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" "ODAM WILD-TYPE" 

Clustering(940) Variable = CYSLTR2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYSLTR2 MUTATED        0      1      0      3
  CYSLTR2 WILD-TYPE     46     57     64     40
D940V1, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYSLTR2 MUTATED        2      1      1
  CYSLTR2 WILD-TYPE     49     82     76
D940V2, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYSLTR2 MUTATED        9      5      2      1
  CYSLTR2 WILD-TYPE    169    178     99     19
D940V3, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYSLTR2 MUTATED        5      3      5
  CYSLTR2 WILD-TYPE     82     77     95
D940V4, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYSLTR2 MUTATED        4      3      6
  CYSLTR2 WILD-TYPE     85    157    132
D940V5, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               3               157
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYSLTR2 MUTATED       11      1      1
  CYSLTR2 WILD-TYPE    171    132     71
D940V6, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYSLTR2 MUTATED        3      5      5      4
  CYSLTR2 WILD-TYPE    109     91     87    182
D940V7, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               5                91
  CLUS_3               5                87
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYSLTR2 MUTATED        0      3      3      2      3      3      3
  CYSLTR2 WILD-TYPE     60     47     46     38     60    122     96
D940V8, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               3                47
  CLUS_3               3                46
  CLUS_4               2                38
  CLUS_5               3                60
  CLUS_6               3               122
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYSLTR2 MUTATED        5      7      1      4
  CYSLTR2 WILD-TYPE    125     71     67    192
D940V9, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               7                71
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYSLTR2 MUTATED        0      5      2      4      2      0      2      2
  CYSLTR2 WILD-TYPE     40     57     26     76     67     48     41     26
                   vv
clus                CLUS_9
  CYSLTR2 MUTATED        0
  CYSLTR2 WILD-TYPE     74
D940V10, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               5                57
  CLUS_3               2                26
  CLUS_4               4                76
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               2                26
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYSLTR2 MUTATED        3      0      1      2
  CYSLTR2 WILD-TYPE     30     31     26     17
D940V11, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYSLTR2 MUTATED        4      0      0      2
  CYSLTR2 WILD-TYPE     50     10     24     20
D940V12, multiclass
        clus
vv       CYSLTR2 MUTATED CYSLTR2 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(941) Variable = RAB6C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB6C MUTATED        0      0      0      0
  RAB6C WILD-TYPE     46     58     64     43
D941V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB6C MUTATED        0      0      0
  RAB6C WILD-TYPE     51     83     77
D941V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB6C MUTATED        3      0      2      0
  RAB6C WILD-TYPE    175    183     99     20
D941V3, multiclass
        clus
vv       RAB6C MUTATED RAB6C WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB6C MUTATED        2      1      2
  RAB6C WILD-TYPE     85     79     98
D941V4, multiclass
        clus
vv       RAB6C MUTATED RAB6C WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB6C MUTATED        0      0      2
  RAB6C WILD-TYPE     89    160    136
D941V5, multiclass
[1] "Remove cluster labels:" "RAB6C MUTATED"         
clus
  RAB6C MUTATED RAB6C WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AH-6644      TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AY-6197      TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6719      TCGA-CI-6621 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918      TCGA-CM-4743 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G5-6641 
"RAB6C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB6C MUTATED        2      0      0
  RAB6C WILD-TYPE    180    133     72
D941V6, multiclass
[1] "Remove cluster labels:" "RAB6C MUTATED"         
clus
  RAB6C MUTATED RAB6C WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AH-6644      TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AY-6197      TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6719      TCGA-CI-6621 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918      TCGA-CM-4743 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G5-6641 
"RAB6C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB6C MUTATED        2      1      2      0
  RAB6C WILD-TYPE    110     95     90    186
D941V7, multiclass
        clus
vv       RAB6C MUTATED RAB6C WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB6C MUTATED        1      1      2      0      1      0      0
  RAB6C WILD-TYPE     59     49     47     40     62    125     99
D941V8, multiclass
        clus
vv       RAB6C MUTATED RAB6C WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB6C MUTATED        2      2      1      0
  RAB6C WILD-TYPE    128     76     67    196
D941V9, multiclass
        clus
vv       RAB6C MUTATED RAB6C WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB6C MUTATED        0      2      1      0      1      0      1      0
  RAB6C WILD-TYPE     40     60     27     80     68     48     42     28
                 vv
clus              CLUS_9
  RAB6C MUTATED        0
  RAB6C WILD-TYPE     74
D941V10, multiclass
        clus
vv       RAB6C MUTATED RAB6C WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB6C MUTATED        0      0      1      1
  RAB6C WILD-TYPE     33     31     26     18
D941V11, multiclass
[1] "Remove cluster labels:" "RAB6C MUTATED"         
clus
  RAB6C MUTATED RAB6C WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB6C MUTATED        1      0      0      1
  RAB6C WILD-TYPE     53     10     24     21
D941V12, multiclass
[1] "Remove cluster labels:" "RAB6C MUTATED"         
clus
  RAB6C MUTATED RAB6C WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" "RAB6C WILD-TYPE" 

Clustering(942) Variable = ZC3H6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H6 MUTATED        2      0      1      3
  ZC3H6 WILD-TYPE     44     58     63     40
D942V1, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H6 MUTATED        2      2      2
  ZC3H6 WILD-TYPE     49     81     75
D942V2, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H6 MUTATED       15      3      0      0
  ZC3H6 WILD-TYPE    163    180    101     20
D942V3, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H6 MUTATED        5      2      5
  ZC3H6 WILD-TYPE     82     78     95
D942V4, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H6 MUTATED        2      3      9
  ZC3H6 WILD-TYPE     87    157    129
D942V5, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H6 MUTATED       10      4      0
  ZC3H6 WILD-TYPE    172    129     72
D942V6, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H6 MUTATED        1      6      5      6
  ZC3H6 WILD-TYPE    111     90     87    180
D942V7, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H6 MUTATED        2      4      3      2      2      1      4
  ZC3H6 WILD-TYPE     58     46     46     38     61    124     95
D942V8, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H6 MUTATED        7      3      1      6
  ZC3H6 WILD-TYPE    123     75     67    190
D942V9, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZC3H6 MUTATED        3      2      1      2      3      0      4      0
  ZC3H6 WILD-TYPE     37     60     27     78     66     48     39     28
                 vv
clus              CLUS_9
  ZC3H6 MUTATED        2
  ZC3H6 WILD-TYPE     72
D942V10, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H6 MUTATED        2      2      0      1
  ZC3H6 WILD-TYPE     31     29     27     18
D942V11, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H6 MUTATED        4      0      0      1
  ZC3H6 WILD-TYPE     50     10     24     21
D942V12, multiclass
        clus
vv       ZC3H6 MUTATED ZC3H6 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(943) Variable = TMEM48 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM48 MUTATED        1      0      0      2
  TMEM48 WILD-TYPE     45     58     64     41
D943V1, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM48 MUTATED        1      1      1
  TMEM48 WILD-TYPE     50     82     76
D943V2, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM48 MUTATED       10      0      1      0
  TMEM48 WILD-TYPE    168    183    100     20
D943V3, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM48 MUTATED        4      1      3
  TMEM48 WILD-TYPE     83     79     97
D943V4, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM48 MUTATED        1      4      5
  TMEM48 WILD-TYPE     88    156    133
D943V5, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM48 MUTATED        5      4      1
  TMEM48 WILD-TYPE    177    129     71
D943V6, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM48 MUTATED        1      5      2      3
  TMEM48 WILD-TYPE    111     91     90    183
D943V7, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM48 MUTATED        2      1      4      0      1      1      2
  TMEM48 WILD-TYPE     58     49     45     40     62    124     97
D943V8, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM48 MUTATED        2      2      1      6
  TMEM48 WILD-TYPE    128     76     67    190
D943V9, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM48 MUTATED        0      2      0      1      5      0      1      0
  TMEM48 WILD-TYPE     40     60     28     79     64     48     42     28
                  vv
clus               CLUS_9
  TMEM48 MUTATED        2
  TMEM48 WILD-TYPE     72
D943V10, multiclass
        clus
vv       TMEM48 MUTATED TMEM48 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM48 MUTATED        0      0      0      2
  TMEM48 WILD-TYPE     33     31     27     17
D943V11, multiclass
[1] "Remove cluster labels:" "TMEM48 MUTATED"        
clus
  TMEM48 MUTATED TMEM48 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM48 MUTATED        1      0      1      0
  TMEM48 WILD-TYPE     53     10     23     22
D943V12, multiclass
[1] "Remove cluster labels:" "TMEM48 MUTATED"        
clus
  TMEM48 MUTATED TMEM48 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" "TMEM48 WILD-TYPE" 

Clustering(944) Variable = C12ORF10 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF10 MUTATED        0      0      0      0
  C12ORF10 WILD-TYPE     46     58     64     43
D944V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF10 MUTATED        0      0      0
  C12ORF10 WILD-TYPE     51     83     77
D944V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF10 MUTATED        3      1      0      0
  C12ORF10 WILD-TYPE    175    182    101     20
D944V3, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                1                182
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF10 MUTATED        0      0      4
  C12ORF10 WILD-TYPE     87     80     96
D944V4, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                0                 80
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF10 MUTATED        1      2      0
  C12ORF10 WILD-TYPE     88    158    138
D944V5, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                0                138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF10 MUTATED        3      0      0
  C12ORF10 WILD-TYPE    179    133     72
D944V6, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                0                133
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF10 MUTATED        0      3      1      0
  C12ORF10 WILD-TYPE    112     93     91    186
D944V7, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                1                 91
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C12ORF10 MUTATED        0      2      2      0      0      0      0
  C12ORF10 WILD-TYPE     60     48     47     40     63    125     99
D944V8, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                2                 48
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF10 MUTATED        4      0      0      0
  C12ORF10 WILD-TYPE    126     78     68    196
D944V9, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                0                196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C12ORF10 MUTATED        1      1      1      0      1      0      0      0
  C12ORF10 WILD-TYPE     39     61     27     80     68     48     43     28
                    vv
clus                 CLUS_9
  C12ORF10 MUTATED        0
  C12ORF10 WILD-TYPE     74
D944V10, multiclass
        clus
vv       C12ORF10 MUTATED C12ORF10 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF10 MUTATED        0      0      0      1
  C12ORF10 WILD-TYPE     33     31     27     18
D944V11, multiclass
[1] "Remove cluster labels:" "C12ORF10 MUTATED"      
clus
  C12ORF10 MUTATED C12ORF10 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-G5-6641 
"C12ORF10 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF10 MUTATED        1      0      0      0
  C12ORF10 WILD-TYPE     53     10     24     22
D944V12, multiclass
[1] "Remove cluster labels:" "C12ORF10 MUTATED"      
clus
  C12ORF10 MUTATED C12ORF10 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" "C12ORF10 WILD-TYPE" 
        TCGA-G5-6641 
"C12ORF10 WILD-TYPE" 

Clustering(945) Variable = OSTM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTM1 MUTATED        0      0      0      0
  OSTM1 WILD-TYPE     46     58     64     43
D945V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSTM1 MUTATED        0      0      0
  OSTM1 WILD-TYPE     51     83     77
D945V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTM1 MUTATED        3      2      0      0
  OSTM1 WILD-TYPE    175    181    101     20
D945V3, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSTM1 MUTATED        0      1      4
  OSTM1 WILD-TYPE     87     79     96
D945V4, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSTM1 MUTATED        0      4      1
  OSTM1 WILD-TYPE     89    156    137
D945V5, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSTM1 MUTATED        1      3      1
  OSTM1 WILD-TYPE    181    130     71
D945V6, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTM1 MUTATED        1      3      1      0
  OSTM1 WILD-TYPE    111     93     91    186
D945V7, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSTM1 MUTATED        0      1      3      1      0      0      0
  OSTM1 WILD-TYPE     60     49     46     39     63    125     99
D945V8, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTM1 MUTATED        4      0      1      0
  OSTM1 WILD-TYPE    126     78     67    196
D945V9, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OSTM1 MUTATED        0      0      0      1      3      0      1      0
  OSTM1 WILD-TYPE     40     62     28     79     66     48     42     28
                 vv
clus              CLUS_9
  OSTM1 MUTATED        0
  OSTM1 WILD-TYPE     74
D945V10, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTM1 MUTATED        1      0      0      2
  OSTM1 WILD-TYPE     32     31     27     17
D945V11, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTM1 MUTATED        0      0      2      1
  OSTM1 WILD-TYPE     54     10     22     21
D945V12, multiclass
        clus
vv       OSTM1 MUTATED OSTM1 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(946) Variable = PLEKHB2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHB2 MUTATED        1      0      0      0
  PLEKHB2 WILD-TYPE     45     58     64     43
D946V1, multiclass
[1] "Remove cluster labels:" "PLEKHB2 MUTATED"       
clus
  PLEKHB2 MUTATED PLEKHB2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHB2 MUTATED        1      0      0
  PLEKHB2 WILD-TYPE     50     83     77
D946V2, multiclass
[1] "Remove cluster labels:" "PLEKHB2 MUTATED"       
clus
  PLEKHB2 MUTATED PLEKHB2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHB2 MUTATED        3      2      1      0
  PLEKHB2 WILD-TYPE    175    181    100     20
D946V3, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHB2 MUTATED        2      2      1
  PLEKHB2 WILD-TYPE     85     78     99
D946V4, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHB2 MUTATED        0      2      1
  PLEKHB2 WILD-TYPE     89    158    137
D946V5, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHB2 MUTATED        1      2      0
  PLEKHB2 WILD-TYPE    181    131     72
D946V6, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHB2 MUTATED        2      1      2      1
  PLEKHB2 WILD-TYPE    110     95     90    185
D946V7, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEKHB2 MUTATED        1      2      2      0      0      0      1
  PLEKHB2 WILD-TYPE     59     48     47     40     63    125     98
D946V8, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHB2 MUTATED        3      2      0      1
  PLEKHB2 WILD-TYPE    127     76     68    195
D946V9, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLEKHB2 MUTATED        0      1      1      3      1      0      0      0
  PLEKHB2 WILD-TYPE     40     61     27     77     68     48     43     28
                   vv
clus                CLUS_9
  PLEKHB2 MUTATED        0
  PLEKHB2 WILD-TYPE     74
D946V10, multiclass
        clus
vv       PLEKHB2 MUTATED PLEKHB2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHB2 MUTATED        1      0      0      1
  PLEKHB2 WILD-TYPE     32     31     27     18
D946V11, multiclass
[1] "Remove cluster labels:" "PLEKHB2 MUTATED"       
clus
  PLEKHB2 MUTATED PLEKHB2 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6603 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHB2 MUTATED        2      0      0      0
  PLEKHB2 WILD-TYPE     52     10     24     22
D946V12, multiclass
[1] "Remove cluster labels:" "PLEKHB2 MUTATED"       
clus
  PLEKHB2 MUTATED PLEKHB2 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6603 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" "PLEKHB2 WILD-TYPE" 

Clustering(947) Variable = RALA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALA MUTATED        0      0      0      1
  RALA WILD-TYPE     46     58     64     42
D947V1, multiclass
[1] "Remove cluster labels:" "RALA MUTATED"          
clus
  RALA MUTATED RALA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RALA WILD-TYPE" "RALA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RALA MUTATED        0      0      1
  RALA WILD-TYPE     51     83     76
D947V2, multiclass
[1] "Remove cluster labels:" "RALA MUTATED"          
clus
  RALA MUTATED RALA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RALA WILD-TYPE" "RALA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALA MUTATED        5      3      0      0
  RALA WILD-TYPE    173    180    101     20
D947V3, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            5            173
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RALA MUTATED        5      1      1
  RALA WILD-TYPE     82     79     99
D947V4, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RALA MUTATED        0      3      4
  RALA WILD-TYPE     89    157    134
D947V5, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RALA MUTATED        4      2      1
  RALA WILD-TYPE    178    131     71
D947V6, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALA MUTATED        2      1      2      3
  RALA WILD-TYPE    110     95     90    183
D947V7, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RALA MUTATED        1      0      3      2      0      1      1
  RALA WILD-TYPE     59     50     46     38     63    124     98
D947V8, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALA MUTATED        3      2      0      3
  RALA WILD-TYPE    127     76     68    193
D947V9, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RALA MUTATED        2      2      0      1      2      0      0      0      1
  RALA WILD-TYPE     38     60     28     79     67     48     43     28     73
D947V10, multiclass
        clus
vv       RALA MUTATED RALA WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALA MUTATED        0      0      0      1
  RALA WILD-TYPE     33     31     27     18
D947V11, multiclass
[1] "Remove cluster labels:" "RALA MUTATED"          
clus
  RALA MUTATED RALA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-G5-6641 
"RALA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALA MUTATED        1      0      0      0
  RALA WILD-TYPE     53     10     24     22
D947V12, multiclass
[1] "Remove cluster labels:" "RALA MUTATED"          
clus
  RALA MUTATED RALA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" "RALA WILD-TYPE" 
    TCGA-G5-6641 
"RALA WILD-TYPE" 

Clustering(948) Variable = BRD8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        1      0      0      5
  BRD8 WILD-TYPE     45     58     64     38
D948V1, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        4      0      2
  BRD8 WILD-TYPE     47     83     75
D948V2, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED       15      1      1      1
  BRD8 WILD-TYPE    163    182    100     19
D948V3, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        2      1      9
  BRD8 WILD-TYPE     85     79     91
D948V4, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        2      5      7
  BRD8 WILD-TYPE     87    155    131
D948V5, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED        6      6      2
  BRD8 WILD-TYPE    176    127     70
D948V6, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        1      8      3      6
  BRD8 WILD-TYPE    111     88     89    180
D948V7, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            8             88
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRD8 MUTATED        2      2      8      1      0      0      5
  BRD8 WILD-TYPE     58     48     41     39     63    125     94
D948V8, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        9      2      0      6
  BRD8 WILD-TYPE    121     76     68    190
D948V9, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BRD8 MUTATED        3      2      3      0      7      0      0      1      1
  BRD8 WILD-TYPE     37     60     25     80     62     48     43     27     73
D948V10, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        3      0      0      3
  BRD8 WILD-TYPE     30     31     27     16
D948V11, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        4      0      2      0
  BRD8 WILD-TYPE     50     10     22     22
D948V12, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(949) Variable = PER3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PER3 MUTATED        3      0      1      4
  PER3 WILD-TYPE     43     58     63     39
D949V1, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PER3 MUTATED        3      1      4
  PER3 WILD-TYPE     48     82     73
D949V2, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PER3 MUTATED       15      2      0      1
  PER3 WILD-TYPE    163    181    101     19
D949V3, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PER3 MUTATED        3      1      6
  PER3 WILD-TYPE     84     79     94
D949V4, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PER3 MUTATED        1      5      5
  PER3 WILD-TYPE     88    155    133
D949V5, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PER3 MUTATED        5      6      0
  PER3 WILD-TYPE    177    127     72
D949V6, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PER3 MUTATED        1      7      3      7
  PER3 WILD-TYPE    111     89     89    179
D949V7, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PER3 MUTATED        1      3      4      1      0      1      8
  PER3 WILD-TYPE     59     47     45     39     63    124     91
D949V8, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PER3 MUTATED        7      2      0      7
  PER3 WILD-TYPE    123     76     68    189
D949V9, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PER3 MUTATED        3      2      1      3      3      0      0      2      2
  PER3 WILD-TYPE     37     60     27     77     66     48     43     26     72
D949V10, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PER3 MUTATED        1      0      0      2
  PER3 WILD-TYPE     32     31     27     17
D949V11, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PER3 MUTATED        2      0      1      0
  PER3 WILD-TYPE     52     10     23     22
D949V12, multiclass
        clus
vv       PER3 MUTATED PER3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(950) Variable = WT1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WT1 MUTATED        3      1      0      1
  WT1 WILD-TYPE     43     57     64     42
D950V1, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           3            43
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WT1 MUTATED        3      1      1
  WT1 WILD-TYPE     48     82     76
D950V2, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           3            48
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WT1 MUTATED       14      6      9      1
  WT1 WILD-TYPE    164    177     92     19
D950V3, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1          14           164
  CLUS_2           6           177
  CLUS_3           9            92
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WT1 MUTATED        8      6     11
  WT1 WILD-TYPE     79     74     89
D950V4, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           8            79
  CLUS_2           6            74
  CLUS_3          11            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WT1 MUTATED        2     13      8
  WT1 WILD-TYPE     87    147    130
D950V5, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           2            87
  CLUS_2          13           147
  CLUS_3           8           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WT1 MUTATED        9     10      4
  WT1 WILD-TYPE    173    123     68
D950V6, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           9           173
  CLUS_2          10           123
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WT1 MUTATED        6     11      8      5
  WT1 WILD-TYPE    106     85     84    181
D950V7, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           6           106
  CLUS_2          11            85
  CLUS_3           8            84
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WT1 MUTATED        6      5      6      2      6      0      5
  WT1 WILD-TYPE     54     45     43     38     57    125     94
D950V8, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           6            54
  CLUS_2           5            45
  CLUS_3           6            43
  CLUS_4           2            38
  CLUS_5           6            57
  CLUS_6           0           125
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WT1 MUTATED       15      7      2      6
  WT1 WILD-TYPE    115     71     66    190
D950V9, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1          15           115
  CLUS_2           7            71
  CLUS_3           2            66
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WT1 MUTATED        4      5      1      5      8      2      5      0      0
  WT1 WILD-TYPE     36     57     27     75     61     46     38     28     74
D950V10, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           4            36
  CLUS_2           5            57
  CLUS_3           1            27
  CLUS_4           5            75
  CLUS_5           8            61
  CLUS_6           2            46
  CLUS_7           5            38
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WT1 MUTATED        0      3      2      1
  WT1 WILD-TYPE     33     28     25     18
D950V11, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           3            28
  CLUS_3           2            25
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WT1 MUTATED        4      0      2      0
  WT1 WILD-TYPE     50     10     22     22
D950V12, multiclass
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  CLUS_1           4            50
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(951) Variable = METTL9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL9 MUTATED        0      0      0      0
  METTL9 WILD-TYPE     46     58     64     43
D951V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL9 MUTATED        0      0      0
  METTL9 WILD-TYPE     51     83     77
D951V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL9 MUTATED        3      1      0      0
  METTL9 WILD-TYPE    175    182    101     20
D951V3, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL9 MUTATED        3      0      1
  METTL9 WILD-TYPE     84     80     99
D951V4, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL9 MUTATED        0      1      2
  METTL9 WILD-TYPE     89    159    136
D951V5, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL9 MUTATED        3      0      0
  METTL9 WILD-TYPE    179    133     72
D951V6, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              0              133
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL9 MUTATED        1      1      2      0
  METTL9 WILD-TYPE    111     95     90    186
D951V7, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  METTL9 MUTATED        0      1      2      0      1      0      0
  METTL9 WILD-TYPE     60     49     47     40     62    125     99
D951V8, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL9 MUTATED        3      1      0      0
  METTL9 WILD-TYPE    127     77     68    196
D951V9, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  METTL9 MUTATED        0      3      0      0      0      0      1      0
  METTL9 WILD-TYPE     40     59     28     80     69     48     42     28
                  vv
clus               CLUS_9
  METTL9 MUTATED        0
  METTL9 WILD-TYPE     74
D951V10, multiclass
        clus
vv       METTL9 MUTATED METTL9 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL9 MUTATED        1      0      0      0
  METTL9 WILD-TYPE     32     31     27     19
D951V11, multiclass
[1] "Remove cluster labels:" "METTL9 MUTATED"        
clus
  METTL9 MUTATED METTL9 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-G5-6641 
"METTL9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL9 MUTATED        1      0      0      0
  METTL9 WILD-TYPE     53     10     24     22
D951V12, multiclass
[1] "Remove cluster labels:" "METTL9 MUTATED"        
clus
  METTL9 MUTATED METTL9 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" "METTL9 WILD-TYPE" 
      TCGA-G5-6641 
"METTL9 WILD-TYPE" 

Clustering(952) Variable = FH MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FH MUTATED        1      0      0      0
  FH WILD-TYPE     45     58     64     43
D952V1, multiclass
[1] "Remove cluster labels:" "FH MUTATED"            
clus
  FH MUTATED FH WILD-TYPE 
           1          210 
  TCGA-A6-2672   TCGA-A6-2674   TCGA-A6-2676   TCGA-A6-2677   TCGA-A6-2678 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-A6-2683   TCGA-A6-3807   TCGA-A6-3808   TCGA-A6-3810   TCGA-AA-3514 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3516   TCGA-AA-3517   TCGA-AA-3518   TCGA-AA-3519   TCGA-AA-3520 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3521   TCGA-AA-3522   TCGA-AA-3524   TCGA-AA-3525   TCGA-AA-3526 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3527   TCGA-AA-3529   TCGA-AA-3530   TCGA-AA-3531   TCGA-AA-3532 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3534   TCGA-AA-3538   TCGA-AA-3542   TCGA-AA-3543   TCGA-AA-3544 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3548   TCGA-AA-3549   TCGA-AA-3552   TCGA-AA-3553   TCGA-AA-3554 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3555   TCGA-AA-3556   TCGA-AA-3558   TCGA-AA-3560   TCGA-AA-3561 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3562   TCGA-AA-3664   TCGA-AA-3666   TCGA-AA-3667   TCGA-AA-3672 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3673   TCGA-AA-3678   TCGA-AA-3679   TCGA-AA-3680   TCGA-AA-3681 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3684   TCGA-AA-3685   TCGA-AA-3688   TCGA-AA-3692   TCGA-AA-3693 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3696   TCGA-AA-3710   TCGA-AA-3715   TCGA-AA-3811   TCGA-AA-3812 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3814   TCGA-AA-3815   TCGA-AA-3818   TCGA-AA-3819   TCGA-AA-3821 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3831   TCGA-AA-3833   TCGA-AA-3837   TCGA-AA-3842   TCGA-AA-3844 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3845   TCGA-AA-3846   TCGA-AA-3848   TCGA-AA-3850   TCGA-AA-3851 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3852   TCGA-AA-3854   TCGA-AA-3855   TCGA-AA-3856   TCGA-AA-3858 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3860   TCGA-AA-3861   TCGA-AA-3864   TCGA-AA-3866   TCGA-AA-3867 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3869   TCGA-AA-3870   TCGA-AA-3872   TCGA-AA-3875   TCGA-AA-3877 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3930   TCGA-AA-3939   TCGA-AA-3941   TCGA-AA-3947   TCGA-AA-3949 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3950   TCGA-AA-3952   TCGA-AA-3955   TCGA-AA-3956   TCGA-AA-3966 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3968   TCGA-AA-3971   TCGA-AA-3972   TCGA-AA-3973   TCGA-AA-3975 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3976   TCGA-AA-3977   TCGA-AA-3979   TCGA-AA-3980   TCGA-AA-3982 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3984   TCGA-AA-3986   TCGA-AA-3989   TCGA-AA-3994   TCGA-AA-A004 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A00A   TCGA-AA-A00D   TCGA-AA-A00E   TCGA-AA-A00F   TCGA-AA-A00J 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A00K   TCGA-AA-A00L   TCGA-AA-A00N   TCGA-AA-A00O   TCGA-AA-A00Q 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A00R   TCGA-AA-A00U   TCGA-AA-A00W   TCGA-AA-A00Z   TCGA-AA-A010 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A017   TCGA-AA-A01D   TCGA-AA-A01F   TCGA-AA-A01G   TCGA-AA-A01I 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A01K   TCGA-AA-A01Q   TCGA-AA-A024   TCGA-AA-A029   TCGA-AA-A02F 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A02H   TCGA-AA-A02J   TCGA-AA-A02W   TCGA-AF-2689   TCGA-AF-2691 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AF-2692   TCGA-AF-3400   TCGA-AF-3913   TCGA-AG-3574   TCGA-AG-3575 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3578   TCGA-AG-3580   TCGA-AG-3581   TCGA-AG-3582   TCGA-AG-3583 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3584   TCGA-AG-3586   TCGA-AG-3587   TCGA-AG-3593   TCGA-AG-3594 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3598   TCGA-AG-3599   TCGA-AG-3600   TCGA-AG-3601   TCGA-AG-3602 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3605   TCGA-AG-3608   TCGA-AG-3609   TCGA-AG-3611   TCGA-AG-3612 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3726   TCGA-AG-3727   TCGA-AG-3878   TCGA-AG-3881   TCGA-AG-3882 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3883   TCGA-AG-3885   TCGA-AG-3887   TCGA-AG-3890   TCGA-AG-3892 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3893   TCGA-AG-3894   TCGA-AG-3896   TCGA-AG-3898   TCGA-AG-3901 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3902   TCGA-AG-3909   TCGA-AG-3999   TCGA-AG-4001   TCGA-AG-4005 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-4007   TCGA-AG-4008   TCGA-AG-4015   TCGA-AG-A002   TCGA-AG-A008 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-A00C   TCGA-AG-A00H   TCGA-AG-A00Y   TCGA-AG-A011   TCGA-AG-A014 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-A015   TCGA-AG-A016   TCGA-AG-A01L   TCGA-AG-A025   TCGA-AG-A026 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-A02G   TCGA-AG-A02X   TCGA-AG-A032   TCGA-AY-4070   TCGA-AY-4071 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  FH MUTATED        1      0      0
  FH WILD-TYPE     50     83     77
D952V2, multiclass
[1] "Remove cluster labels:" "FH MUTATED"            
clus
  FH MUTATED FH WILD-TYPE 
           1          210 
  TCGA-A6-2672   TCGA-A6-2674   TCGA-A6-2676   TCGA-A6-2677   TCGA-A6-2678 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-A6-2683   TCGA-A6-3807   TCGA-A6-3808   TCGA-A6-3810   TCGA-AA-3514 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3516   TCGA-AA-3517   TCGA-AA-3518   TCGA-AA-3519   TCGA-AA-3520 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3521   TCGA-AA-3522   TCGA-AA-3524   TCGA-AA-3525   TCGA-AA-3526 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3527   TCGA-AA-3529   TCGA-AA-3530   TCGA-AA-3531   TCGA-AA-3532 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3534   TCGA-AA-3538   TCGA-AA-3542   TCGA-AA-3543   TCGA-AA-3544 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3548   TCGA-AA-3549   TCGA-AA-3552   TCGA-AA-3553   TCGA-AA-3554 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3555   TCGA-AA-3556   TCGA-AA-3558   TCGA-AA-3560   TCGA-AA-3561 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3562   TCGA-AA-3664   TCGA-AA-3666   TCGA-AA-3667   TCGA-AA-3672 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3673   TCGA-AA-3678   TCGA-AA-3679   TCGA-AA-3680   TCGA-AA-3681 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3684   TCGA-AA-3685   TCGA-AA-3688   TCGA-AA-3692   TCGA-AA-3693 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3696   TCGA-AA-3710   TCGA-AA-3715   TCGA-AA-3811   TCGA-AA-3812 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3814   TCGA-AA-3815   TCGA-AA-3818   TCGA-AA-3819   TCGA-AA-3821 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3831   TCGA-AA-3833   TCGA-AA-3837   TCGA-AA-3842   TCGA-AA-3844 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3845   TCGA-AA-3846   TCGA-AA-3848   TCGA-AA-3850   TCGA-AA-3851 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3852   TCGA-AA-3854   TCGA-AA-3855   TCGA-AA-3856   TCGA-AA-3858 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3860   TCGA-AA-3861   TCGA-AA-3864   TCGA-AA-3866   TCGA-AA-3867 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3869   TCGA-AA-3870   TCGA-AA-3872   TCGA-AA-3875   TCGA-AA-3877 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3930   TCGA-AA-3939   TCGA-AA-3941   TCGA-AA-3947   TCGA-AA-3949 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3950   TCGA-AA-3952   TCGA-AA-3955   TCGA-AA-3956   TCGA-AA-3966 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3968   TCGA-AA-3971   TCGA-AA-3972   TCGA-AA-3973   TCGA-AA-3975 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3976   TCGA-AA-3977   TCGA-AA-3979   TCGA-AA-3980   TCGA-AA-3982 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-3984   TCGA-AA-3986   TCGA-AA-3989   TCGA-AA-3994   TCGA-AA-A004 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A00A   TCGA-AA-A00D   TCGA-AA-A00E   TCGA-AA-A00F   TCGA-AA-A00J 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A00K   TCGA-AA-A00L   TCGA-AA-A00N   TCGA-AA-A00O   TCGA-AA-A00Q 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A00R   TCGA-AA-A00U   TCGA-AA-A00W   TCGA-AA-A00Z   TCGA-AA-A010 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A017   TCGA-AA-A01D   TCGA-AA-A01F   TCGA-AA-A01G   TCGA-AA-A01I 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A01K   TCGA-AA-A01Q   TCGA-AA-A024   TCGA-AA-A029   TCGA-AA-A02F 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AA-A02H   TCGA-AA-A02J   TCGA-AA-A02W   TCGA-AF-2689   TCGA-AF-2691 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AF-2692   TCGA-AF-3400   TCGA-AF-3913   TCGA-AG-3574   TCGA-AG-3575 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3578   TCGA-AG-3580   TCGA-AG-3581   TCGA-AG-3582   TCGA-AG-3583 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3584   TCGA-AG-3586   TCGA-AG-3587   TCGA-AG-3593   TCGA-AG-3594 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3598   TCGA-AG-3599   TCGA-AG-3600   TCGA-AG-3601   TCGA-AG-3602 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3605   TCGA-AG-3608   TCGA-AG-3609   TCGA-AG-3611   TCGA-AG-3612 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3726   TCGA-AG-3727   TCGA-AG-3878   TCGA-AG-3881   TCGA-AG-3882 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3883   TCGA-AG-3885   TCGA-AG-3887   TCGA-AG-3890   TCGA-AG-3892 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3893   TCGA-AG-3894   TCGA-AG-3896   TCGA-AG-3898   TCGA-AG-3901 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-3902   TCGA-AG-3909   TCGA-AG-3999   TCGA-AG-4001   TCGA-AG-4005 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-4007   TCGA-AG-4008   TCGA-AG-4015   TCGA-AG-A002   TCGA-AG-A008 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-A00C   TCGA-AG-A00H   TCGA-AG-A00Y   TCGA-AG-A011   TCGA-AG-A014 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-A015   TCGA-AG-A016   TCGA-AG-A01L   TCGA-AG-A025   TCGA-AG-A026 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
  TCGA-AG-A02G   TCGA-AG-A02X   TCGA-AG-A032   TCGA-AY-4070   TCGA-AY-4071 
"FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" "FH WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FH MUTATED        6      3      1      0
  FH WILD-TYPE    172    180    100     20
D952V3, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          6          172
  CLUS_2          3          180
  CLUS_3          1          100
  CLUS_4          0           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  FH MUTATED        3      0      6
  FH WILD-TYPE     84     80     94
D952V4, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          3           84
  CLUS_2          0           80
  CLUS_3          6           94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  FH MUTATED        0      5      3
  FH WILD-TYPE     89    155    135
D952V5, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          0           89
  CLUS_2          5          155
  CLUS_3          3          135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  FH MUTATED        3      4      1
  FH WILD-TYPE    179    129     71
D952V6, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          3          179
  CLUS_2          4          129
  CLUS_3          1           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FH MUTATED        1      4      2      3
  FH WILD-TYPE    111     92     90    183
D952V7, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          1          111
  CLUS_2          4           92
  CLUS_3          2           90
  CLUS_4          3          183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FH MUTATED        1      1      3      1      0      1      3
  FH WILD-TYPE     59     49     46     39     63    124     96
D952V8, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          1           59
  CLUS_2          1           49
  CLUS_3          3           46
  CLUS_4          1           39
  CLUS_5          0           63
  CLUS_6          1          124
  CLUS_7          3           96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FH MUTATED        3      2      1      4
  FH WILD-TYPE    127     76     67    192
D952V9, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          3          127
  CLUS_2          2           76
  CLUS_3          1           67
  CLUS_4          4          192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FH MUTATED        1      2      0      2      3      0      2      0      0
  FH WILD-TYPE     39     60     28     78     66     48     41     28     74
D952V10, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          1           39
  CLUS_2          2           60
  CLUS_3          0           28
  CLUS_4          2           78
  CLUS_5          3           66
  CLUS_6          0           48
  CLUS_7          2           41
  CLUS_8          0           28
  CLUS_9          0           74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FH MUTATED        1      0      0      2
  FH WILD-TYPE     32     31     27     17
D952V11, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          1           32
  CLUS_2          0           31
  CLUS_3          0           27
  CLUS_4          2           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FH MUTATED        2      0      0      1
  FH WILD-TYPE     52     10     24     21
D952V12, multiclass
        clus
vv       FH MUTATED FH WILD-TYPE
  CLUS_1          2           52
  CLUS_2          0           10
  CLUS_3          0           24
  CLUS_4          1           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(953) Variable = H2AFJ MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFJ MUTATED        0      0      0      0
  H2AFJ WILD-TYPE     46     58     64     43
D953V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  H2AFJ MUTATED        0      0      0
  H2AFJ WILD-TYPE     51     83     77
D953V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFJ MUTATED        2      0      1      0
  H2AFJ WILD-TYPE    176    183    100     20
D953V3, multiclass
        clus
vv       H2AFJ MUTATED H2AFJ WILD-TYPE
  CLUS_1             2             176
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  H2AFJ MUTATED        1      0      2
  H2AFJ WILD-TYPE     86     80     98
D953V4, multiclass
        clus
vv       H2AFJ MUTATED H2AFJ WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  H2AFJ MUTATED        2      0      0
  H2AFJ WILD-TYPE     87    160    138
D953V5, multiclass
[1] "Remove cluster labels:" "H2AFJ MUTATED"         
clus
  H2AFJ MUTATED H2AFJ WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3715      TCGA-AA-3811 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5349 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G5-6641 
"H2AFJ WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  H2AFJ MUTATED        0      0      2
  H2AFJ WILD-TYPE    182    133     70
D953V6, multiclass
[1] "Remove cluster labels:" "H2AFJ MUTATED"         
clus
  H2AFJ MUTATED H2AFJ WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3715      TCGA-AA-3811 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5349 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" "H2AFJ WILD-TYPE" 
     TCGA-G5-6641 
"H2AFJ WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFJ MUTATED        0      2      1      0
  H2AFJ WILD-TYPE    112     94     91    186
D953V7, multiclass
        clus
vv       H2AFJ MUTATED H2AFJ WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  H2AFJ MUTATED        0      0      1      1      1      0      0
  H2AFJ WILD-TYPE     60     50     48     39     62    125     99
D953V8, multiclass
        clus
vv       H2AFJ MUTATED H2AFJ WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFJ MUTATED        3      0      0      0
  H2AFJ WILD-TYPE    127     78     68    196
D953V9, multiclass
        clus
vv       H2AFJ MUTATED H2AFJ WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  H2AFJ MUTATED        1      0      0      1      1      0      0      0
  H2AFJ WILD-TYPE     39     62     28     79     68     48     43     28
                 vv
clus              CLUS_9
  H2AFJ MUTATED        0
  H2AFJ WILD-TYPE     74
D953V10, multiclass
        clus
vv       H2AFJ MUTATED H2AFJ WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFJ MUTATED        0      0      0      0
  H2AFJ WILD-TYPE     33     31     27     19
D953V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFJ MUTATED        0      0      0      0
  H2AFJ WILD-TYPE     54     10     24     22
D953V12, multiclass

Clustering(954) Variable = CDH10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED        5      0      1      8
  CDH10 WILD-TYPE     41     58     63     35
D954V1, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             8              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH10 MUTATED        9      1      4
  CDH10 WILD-TYPE     42     82     73
D954V2, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             1              82
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED       31      4      5      1
  CDH10 WILD-TYPE    147    179     96     19
D954V3, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            31             147
  CLUS_2             4             179
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH10 MUTATED       10      6     11
  CDH10 WILD-TYPE     77     74     89
D954V4, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             6              74
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH10 MUTATED        6     14     17
  CDH10 WILD-TYPE     83    146    121
D954V5, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             6              83
  CLUS_2            14             146
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH10 MUTATED       19     14      4
  CDH10 WILD-TYPE    163    119     68
D954V6, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            19             163
  CLUS_2            14             119
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED        7     12     10     13
  CDH10 WILD-TYPE    105     84     82    173
D954V7, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             7             105
  CLUS_2            12              84
  CLUS_3            10              82
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH10 MUTATED        4      8     11      1      5      1     12
  CDH10 WILD-TYPE     56     42     38     39     58    124     87
D954V8, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             8              42
  CLUS_3            11              38
  CLUS_4             1              39
  CLUS_5             5              58
  CLUS_6             1             124
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED       18      6      3     13
  CDH10 WILD-TYPE    112     72     65    183
D954V9, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            18             112
  CLUS_2             6              72
  CLUS_3             3              65
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDH10 MUTATED        4      9      3      2     14      2      3      1
  CDH10 WILD-TYPE     36     53     25     78     55     46     40     27
                 vv
clus              CLUS_9
  CDH10 MUTATED        2
  CDH10 WILD-TYPE     72
D954V10, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             9              53
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5            14              55
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED        6      1      0      5
  CDH10 WILD-TYPE     27     30     27     14
D954V11, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1             6              27
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH10 MUTATED       10      0      1      1
  CDH10 WILD-TYPE     44     10     23     21
D954V12, multiclass
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  CLUS_1            10              44
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(955) Variable = HCRTR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        2      0      0      1
  HCRTR2 WILD-TYPE     44     58     64     42
D955V1, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        2      0      1
  HCRTR2 WILD-TYPE     49     83     76
D955V2, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        3      1      1      0
  HCRTR2 WILD-TYPE    175    182    100     20
D955V3, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        0      0      4
  HCRTR2 WILD-TYPE     87     80     96
D955V4, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        0      5      1
  HCRTR2 WILD-TYPE     89    155    137
D955V5, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        3      2      1
  HCRTR2 WILD-TYPE    179    131     71
D955V6, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        0      5      0      2
  HCRTR2 WILD-TYPE    112     91     92    184
D955V7, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HCRTR2 MUTATED        0      1      2      0      0      0      4
  HCRTR2 WILD-TYPE     60     49     47     40     63    125     95
D955V8, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        3      0      0      4
  HCRTR2 WILD-TYPE    127     78     68    192
D955V9, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HCRTR2 MUTATED        0      1      2      0      4      0      0      0
  HCRTR2 WILD-TYPE     40     61     26     80     65     48     43     28
                  vv
clus               CLUS_9
  HCRTR2 MUTATED        0
  HCRTR2 WILD-TYPE     74
D955V10, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        0      0      0      1
  HCRTR2 WILD-TYPE     33     31     27     18
D955V11, multiclass
[1] "Remove cluster labels:" "HCRTR2 MUTATED"        
clus
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-G5-6641 
"HCRTR2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        0      0      1      0
  HCRTR2 WILD-TYPE     54     10     23     22
D955V12, multiclass
[1] "Remove cluster labels:" "HCRTR2 MUTATED"        
clus
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" "HCRTR2 WILD-TYPE" 
      TCGA-G5-6641 
"HCRTR2 WILD-TYPE" 

Clustering(956) Variable = MTF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF1 MUTATED        2      0      0      3
  MTF1 WILD-TYPE     44     58     64     40
D956V1, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF1 MUTATED        3      1      1
  MTF1 WILD-TYPE     48     82     76
D956V2, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF1 MUTATED        8      1      1      0
  MTF1 WILD-TYPE    170    182    100     20
D956V3, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF1 MUTATED        2      0      3
  MTF1 WILD-TYPE     85     80     97
D956V4, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF1 MUTATED        1      2      4
  MTF1 WILD-TYPE     88    158    134
D956V5, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF1 MUTATED        5      1      1
  MTF1 WILD-TYPE    177    132     71
D956V6, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF1 MUTATED        0      1      4      5
  MTF1 WILD-TYPE    112     95     88    181
D956V7, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            4             88
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTF1 MUTATED        2      1      2      0      1      1      3
  MTF1 WILD-TYPE     58     49     47     40     62    124     96
D956V8, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF1 MUTATED        3      2      0      5
  MTF1 WILD-TYPE    127     76     68    191
D956V9, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTF1 MUTATED        1      4      0      1      3      0      0      0      1
  MTF1 WILD-TYPE     39     58     28     79     66     48     43     28     73
D956V10, multiclass
        clus
vv       MTF1 MUTATED MTF1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF1 MUTATED        0      0      0      1
  MTF1 WILD-TYPE     33     31     27     18
D956V11, multiclass
[1] "Remove cluster labels:" "MTF1 MUTATED"          
clus
  MTF1 MUTATED MTF1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-G5-6641 
"MTF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF1 MUTATED        1      0      0      0
  MTF1 WILD-TYPE     53     10     24     22
D956V12, multiclass
[1] "Remove cluster labels:" "MTF1 MUTATED"          
clus
  MTF1 MUTATED MTF1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" "MTF1 WILD-TYPE" 
    TCGA-G5-6641 
"MTF1 WILD-TYPE" 

Clustering(957) Variable = ZNF518B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF518B MUTATED        0      1      1      1
  ZNF518B WILD-TYPE     46     57     63     42
D957V1, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF518B MUTATED        0      2      1
  ZNF518B WILD-TYPE     51     81     76
D957V2, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF518B MUTATED        5      5      2      2
  ZNF518B WILD-TYPE    173    178     99     18
D957V3, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               5               173
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF518B MUTATED        5      2      4
  ZNF518B WILD-TYPE     82     78     96
D957V4, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF518B MUTATED        2      4      5
  ZNF518B WILD-TYPE     87    156    133
D957V5, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF518B MUTATED        4      4      3
  ZNF518B WILD-TYPE    178    129     69
D957V6, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF518B MUTATED        4      4      3      3
  ZNF518B WILD-TYPE    108     92     89    183
D957V7, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               4               108
  CLUS_2               4                92
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF518B MUTATED        3      2      3      1      3      2      0
  ZNF518B WILD-TYPE     57     48     46     39     60    123     99
D957V8, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               3                57
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               2               123
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF518B MUTATED        5      4      2      3
  ZNF518B WILD-TYPE    125     74     66    193
D957V9, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               5               125
  CLUS_2               4                74
  CLUS_3               2                66
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF518B MUTATED        2      2      1      2      3      3      1      0
  ZNF518B WILD-TYPE     38     60     27     78     66     45     42     28
                   vv
clus                CLUS_9
  ZNF518B MUTATED        0
  ZNF518B WILD-TYPE     74
D957V10, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               3                45
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF518B MUTATED        2      0      2      1
  ZNF518B WILD-TYPE     31     31     25     18
D957V11, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               2                25
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF518B MUTATED        2      1      2      0
  ZNF518B WILD-TYPE     52      9     22     22
D957V12, multiclass
        clus
vv       ZNF518B MUTATED ZNF518B WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(958) Variable = KIAA0195 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        1      1      2      0
  KIAA0195 WILD-TYPE     45     57     62     43
D958V1, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 57
  CLUS_3                2                 62
  CLUS_4                0                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED        1      1      2
  KIAA0195 WILD-TYPE     50     82     75
D958V2, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED       15      3      0      0
  KIAA0195 WILD-TYPE    163    180    101     20
D958V3, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1               15                163
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED        4      1      8
  KIAA0195 WILD-TYPE     83     79     92
D958V4, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                1                 79
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED        1      4     11
  KIAA0195 WILD-TYPE     88    156    127
D958V5, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED       13      3      0
  KIAA0195 WILD-TYPE    169    130     72
D958V6, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1               13                169
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        1      6      6      5
  KIAA0195 WILD-TYPE    111     90     86    181
D958V7, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                6                 90
  CLUS_3                6                 86
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0195 MUTATED        1      1     11      0      0      2      3
  KIAA0195 WILD-TYPE     59     49     38     40     63    123     96
D958V8, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3               11                 38
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        9      3      1      4
  KIAA0195 WILD-TYPE    121     75     67    192
D958V9, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                9                121
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0195 MUTATED        1      5      2      1      5      1      0      1
  KIAA0195 WILD-TYPE     39     57     26     79     64     47     43     27
                    vv
clus                 CLUS_9
  KIAA0195 MUTATED        1
  KIAA0195 WILD-TYPE     73
D958V10, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                5                 57
  CLUS_3                2                 26
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        3      0      0      2
  KIAA0195 WILD-TYPE     30     31     27     17
D958V11, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        4      0      1      0
  KIAA0195 WILD-TYPE     50     10     23     22
D958V12, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(959) Variable = FAM20B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20B MUTATED        1      0      0      1
  FAM20B WILD-TYPE     45     58     64     42
D959V1, multiclass
[1] "Remove cluster labels:" "FAM20B MUTATED"        
clus
  FAM20B MUTATED FAM20B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AY-4071 
"FAM20B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM20B MUTATED        2      0      0
  FAM20B WILD-TYPE     49     83     77
D959V2, multiclass
[1] "Remove cluster labels:" "FAM20B MUTATED"        
clus
  FAM20B MUTATED FAM20B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" "FAM20B WILD-TYPE" 
      TCGA-AY-4071 
"FAM20B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20B MUTATED        7      0      3      0
  FAM20B WILD-TYPE    171    183     98     20
D959V3, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              7              171
  CLUS_2              0              183
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM20B MUTATED        6      0      2
  FAM20B WILD-TYPE     81     80     98
D959V4, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM20B MUTATED        0      5      3
  FAM20B WILD-TYPE     89    155    135
D959V5, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM20B MUTATED        3      3      2
  FAM20B WILD-TYPE    179    130     70
D959V6, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20B MUTATED        2      3      2      3
  FAM20B WILD-TYPE    110     93     90    183
D959V7, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM20B MUTATED        2      0      4      0      1      0      3
  FAM20B WILD-TYPE     58     50     45     40     62    125     96
D959V8, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20B MUTATED        6      1      0      2
  FAM20B WILD-TYPE    124     77     68    194
D959V9, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM20B MUTATED        2      2      0      0      3      1      0      0
  FAM20B WILD-TYPE     38     60     28     80     66     47     43     28
                  vv
clus               CLUS_9
  FAM20B MUTATED        1
  FAM20B WILD-TYPE     73
D959V10, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20B MUTATED        1      0      0      3
  FAM20B WILD-TYPE     32     31     27     16
D959V11, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM20B MUTATED        2      0      2      0
  FAM20B WILD-TYPE     52     10     22     22
D959V12, multiclass
        clus
vv       FAM20B MUTATED FAM20B WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(960) Variable = EPHB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB1 MUTATED        1      0      1      4
  EPHB1 WILD-TYPE     45     58     63     39
D960V1, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB1 MUTATED        2      1      3
  EPHB1 WILD-TYPE     49     82     74
D960V2, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB1 MUTATED       22      9      6      6
  EPHB1 WILD-TYPE    156    174     95     14
D960V3, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             9             174
  CLUS_3             6              95
  CLUS_4             6              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB1 MUTATED       13     10     11
  EPHB1 WILD-TYPE     74     70     89
D960V4, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1            13              74
  CLUS_2            10              70
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB1 MUTATED        8     10     19
  EPHB1 WILD-TYPE     81    150    119
D960V5, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             8              81
  CLUS_2            10             150
  CLUS_3            19             119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB1 MUTATED       20     10      7
  EPHB1 WILD-TYPE    162    123     65
D960V6, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1            20             162
  CLUS_2            10             123
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB1 MUTATED       11     15     11      5
  EPHB1 WILD-TYPE    101     81     81    181
D960V7, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1            11             101
  CLUS_2            15              81
  CLUS_3            11              81
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHB1 MUTATED       10      9      7      6      5      0      5
  EPHB1 WILD-TYPE     50     41     42     34     58    125     94
D960V8, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1            10              50
  CLUS_2             9              41
  CLUS_3             7              42
  CLUS_4             6              34
  CLUS_5             5              58
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB1 MUTATED       20      7      3     13
  EPHB1 WILD-TYPE    110     71     65    183
D960V9, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1            20             110
  CLUS_2             7              71
  CLUS_3             3              65
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHB1 MUTATED        8      6      4      8      7      3      4      1
  EPHB1 WILD-TYPE     32     56     24     72     62     45     39     27
                 vv
clus              CLUS_9
  EPHB1 MUTATED        2
  EPHB1 WILD-TYPE     72
D960V10, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             8              32
  CLUS_2             6              56
  CLUS_3             4              24
  CLUS_4             8              72
  CLUS_5             7              62
  CLUS_6             3              45
  CLUS_7             4              39
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB1 MUTATED        5      4      1      5
  EPHB1 WILD-TYPE     28     27     26     14
D960V11, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             4              27
  CLUS_3             1              26
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB1 MUTATED        8      2      4      1
  EPHB1 WILD-TYPE     46      8     20     21
D960V12, multiclass
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  CLUS_1             8              46
  CLUS_2             2               8
  CLUS_3             4              20
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(961) Variable = APBB1IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBB1IP MUTATED        2      0      1      2
  APBB1IP WILD-TYPE     44     58     63     41
D961V1, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APBB1IP MUTATED        3      1      1
  APBB1IP WILD-TYPE     48     82     76
D961V2, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBB1IP MUTATED       11      4      4      0
  APBB1IP WILD-TYPE    167    179     97     20
D961V3, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1              11               167
  CLUS_2               4               179
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APBB1IP MUTATED        5      2      7
  APBB1IP WILD-TYPE     82     78     93
D961V4, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APBB1IP MUTATED        1      9      4
  APBB1IP WILD-TYPE     88    151    134
D961V5, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               1                88
  CLUS_2               9               151
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APBB1IP MUTATED        5      6      3
  APBB1IP WILD-TYPE    177    127     69
D961V6, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               5               177
  CLUS_2               6               127
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBB1IP MUTATED        4      3      6      6
  APBB1IP WILD-TYPE    108     93     86    180
D961V7, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               4               108
  CLUS_2               3                93
  CLUS_3               6                86
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APBB1IP MUTATED        2      3      4      1      3      1      5
  APBB1IP WILD-TYPE     58     47     45     39     60    124     94
D961V8, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBB1IP MUTATED        8      5      1      4
  APBB1IP WILD-TYPE    122     73     67    192
D961V9, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               8               122
  CLUS_2               5                73
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  APBB1IP MUTATED        3      2      1      4      1      0      2      3
  APBB1IP WILD-TYPE     37     60     27     76     68     48     41     25
                   vv
clus                CLUS_9
  APBB1IP MUTATED        2
  APBB1IP WILD-TYPE     72
D961V10, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               3                37
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               4                76
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               3                25
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBB1IP MUTATED        1      2      1      2
  APBB1IP WILD-TYPE     32     29     26     17
D961V11, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBB1IP MUTATED        5      0      1      0
  APBB1IP WILD-TYPE     49     10     23     22
D961V12, multiclass
        clus
vv       APBB1IP MUTATED APBB1IP WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(962) Variable = TXNDC17 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC17 MUTATED        0      0      0      0
  TXNDC17 WILD-TYPE     46     58     64     43
D962V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC17 MUTATED        0      0      0
  TXNDC17 WILD-TYPE     51     83     77
D962V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC17 MUTATED        3      1      1      0
  TXNDC17 WILD-TYPE    175    182    100     20
D962V3, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC17 MUTATED        0      2      3
  TXNDC17 WILD-TYPE     87     78     97
D962V4, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               2                78
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC17 MUTATED        0      3      1
  TXNDC17 WILD-TYPE     89    157    137
D962V5, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TXNDC17 MUTATED        2      2      0
  TXNDC17 WILD-TYPE    180    131     72
D962V6, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC17 MUTATED        1      3      1      0
  TXNDC17 WILD-TYPE    111     93     91    186
D962V7, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNDC17 MUTATED        1      0      3      0      1      0      0
  TXNDC17 WILD-TYPE     59     50     46     40     62    125     99
D962V8, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC17 MUTATED        5      0      0      0
  TXNDC17 WILD-TYPE    125     78     68    196
D962V9, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXNDC17 MUTATED        2      1      0      0      1      1      0      0
  TXNDC17 WILD-TYPE     38     61     28     80     68     47     43     28
                   vv
clus                CLUS_9
  TXNDC17 MUTATED        0
  TXNDC17 WILD-TYPE     74
D962V10, multiclass
        clus
vv       TXNDC17 MUTATED TXNDC17 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC17 MUTATED        0      0      0      1
  TXNDC17 WILD-TYPE     33     31     27     18
D962V11, multiclass
[1] "Remove cluster labels:" "TXNDC17 MUTATED"       
clus
  TXNDC17 MUTATED TXNDC17 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6534        TCGA-D5-6536 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-G5-6641 
"TXNDC17 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNDC17 MUTATED        0      0      0      1
  TXNDC17 WILD-TYPE     54     10     24     21
D962V12, multiclass
[1] "Remove cluster labels:" "TXNDC17 MUTATED"       
clus
  TXNDC17 MUTATED TXNDC17 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6534        TCGA-D5-6536 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" "TXNDC17 WILD-TYPE" 
       TCGA-G5-6641 
"TXNDC17 WILD-TYPE" 

Clustering(963) Variable = HPSE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPSE MUTATED        0      0      0      2
  HPSE WILD-TYPE     46     58     64     41
D963V1, multiclass
[1] "Remove cluster labels:" "HPSE MUTATED"          
clus
  HPSE MUTATED HPSE WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AY-4071 
"HPSE WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPSE MUTATED        1      1      0
  HPSE WILD-TYPE     50     82     77
D963V2, multiclass
[1] "Remove cluster labels:" "HPSE MUTATED"          
clus
  HPSE MUTATED HPSE WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" "HPSE WILD-TYPE" 
    TCGA-AY-4071 
"HPSE WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPSE MUTATED        9      0      2      0
  HPSE WILD-TYPE    169    183     99     20
D963V3, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPSE MUTATED        5      0      4
  HPSE WILD-TYPE     82     80     96
D963V4, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPSE MUTATED        1      4      3
  HPSE WILD-TYPE     88    156    135
D963V5, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPSE MUTATED        3      4      1
  HPSE WILD-TYPE    179    129     71
D963V6, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPSE MUTATED        0      7      2      2
  HPSE WILD-TYPE    112     89     90    184
D963V7, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            0            112
  CLUS_2            7             89
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HPSE MUTATED        0      3      3      2      1      0      2
  HPSE WILD-TYPE     60     47     46     38     62    125     97
D963V8, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPSE MUTATED        6      1      1      3
  HPSE WILD-TYPE    124     77     67    193
D963V9, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HPSE MUTATED        3      1      3      1      2      0      0      0      1
  HPSE WILD-TYPE     37     61     25     79     67     48     43     28     73
D963V10, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            3             37
  CLUS_2            1             61
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPSE MUTATED        1      0      1      2
  HPSE WILD-TYPE     32     31     26     17
D963V11, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPSE MUTATED        1      0      3      0
  HPSE WILD-TYPE     53     10     21     22
D963V12, multiclass
        clus
vv       HPSE MUTATED HPSE WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(964) Variable = SLC39A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A2 MUTATED        1      1      0      2
  SLC39A2 WILD-TYPE     45     57     64     41
D964V1, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A2 MUTATED        2      0      2
  SLC39A2 WILD-TYPE     49     83     75
D964V2, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A2 MUTATED        5      3      1      1
  SLC39A2 WILD-TYPE    173    180    100     19
D964V3, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A2 MUTATED        4      2      0
  SLC39A2 WILD-TYPE     83     78    100
D964V4, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A2 MUTATED        1      3      4
  SLC39A2 WILD-TYPE     88    157    134
D964V5, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A2 MUTATED        4      4      0
  SLC39A2 WILD-TYPE    178    129     72
D964V6, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A2 MUTATED        2      2      2      4
  SLC39A2 WILD-TYPE    110     94     90    182
D964V7, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC39A2 MUTATED        2      2      1      2      0      1      2
  SLC39A2 WILD-TYPE     58     48     48     38     63    124     97
D964V8, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               2                38
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A2 MUTATED        2      1      2      4
  SLC39A2 WILD-TYPE    128     77     66    192
D964V9, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               2                66
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC39A2 MUTATED        0      3      0      1      2      0      2      0
  SLC39A2 WILD-TYPE     40     59     28     79     67     48     41     28
                   vv
clus                CLUS_9
  SLC39A2 MUTATED        1
  SLC39A2 WILD-TYPE     73
D964V10, multiclass
        clus
vv       SLC39A2 MUTATED SLC39A2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A2 MUTATED        0      1      1      0
  SLC39A2 WILD-TYPE     33     30     26     19
D964V11, multiclass
[1] "Remove cluster labels:" "SLC39A2 MUTATED"       
clus
  SLC39A2 MUTATED SLC39A2 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A2 MUTATED        1      0      0      1
  SLC39A2 WILD-TYPE     53     10     24     21
D964V12, multiclass
[1] "Remove cluster labels:" "SLC39A2 MUTATED"       
clus
  SLC39A2 MUTATED SLC39A2 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" "SLC39A2 WILD-TYPE" 

Clustering(965) Variable = C9ORF71 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF71 MUTATED        0      0      0      0
  C9ORF71 WILD-TYPE     46     58     64     43
D965V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF71 MUTATED        0      0      0
  C9ORF71 WILD-TYPE     51     83     77
D965V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF71 MUTATED        4      0      0      0
  C9ORF71 WILD-TYPE    174    183    101     20
D965V3, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF71 MUTATED        1      0      3
  C9ORF71 WILD-TYPE     86     80     97
D965V4, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF71 MUTATED        0      0      4
  C9ORF71 WILD-TYPE     89    160    134
D965V5, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               0               160
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF71 MUTATED        4      0      0
  C9ORF71 WILD-TYPE    178    133     72
D965V6, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               0               133
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF71 MUTATED        0      2      2      0
  C9ORF71 WILD-TYPE    112     94     90    186
D965V7, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C9ORF71 MUTATED        0      0      3      0      1      0      0
  C9ORF71 WILD-TYPE     60     50     46     40     62    125     99
D965V8, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF71 MUTATED        2      1      0      1
  C9ORF71 WILD-TYPE    128     77     68    195
D965V9, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C9ORF71 MUTATED        0      1      0      0      1      0      2      0
  C9ORF71 WILD-TYPE     40     61     28     80     68     48     41     28
                   vv
clus                CLUS_9
  C9ORF71 MUTATED        0
  C9ORF71 WILD-TYPE     74
D965V10, multiclass
        clus
vv       C9ORF71 MUTATED C9ORF71 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF71 MUTATED        0      0      0      1
  C9ORF71 WILD-TYPE     33     31     27     18
D965V11, multiclass
[1] "Remove cluster labels:" "C9ORF71 MUTATED"       
clus
  C9ORF71 MUTATED C9ORF71 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-G5-6641 
"C9ORF71 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF71 MUTATED        1      0      0      0
  C9ORF71 WILD-TYPE     53     10     24     22
D965V12, multiclass
[1] "Remove cluster labels:" "C9ORF71 MUTATED"       
clus
  C9ORF71 MUTATED C9ORF71 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235 
"C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" "C9ORF71 WILD-TYPE" 
       TCGA-G5-6641 
"C9ORF71 WILD-TYPE" 

Clustering(966) Variable = STYK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STYK1 MUTATED        0      0      0      0
  STYK1 WILD-TYPE     46     58     64     43
D966V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STYK1 MUTATED        0      0      0
  STYK1 WILD-TYPE     51     83     77
D966V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STYK1 MUTATED        4      2      1      0
  STYK1 WILD-TYPE    174    181    100     20
D966V3, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STYK1 MUTATED        1      3      2
  STYK1 WILD-TYPE     86     77     98
D966V4, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STYK1 MUTATED        0      4      2
  STYK1 WILD-TYPE     89    156    136
D966V5, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STYK1 MUTATED        2      4      0
  STYK1 WILD-TYPE    180    129     72
D966V6, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STYK1 MUTATED        4      1      1      1
  STYK1 WILD-TYPE    108     95     91    185
D966V7, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STYK1 MUTATED        4      0      2      0      0      0      1
  STYK1 WILD-TYPE     56     50     47     40     63    125     98
D966V8, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STYK1 MUTATED        3      1      1      2
  STYK1 WILD-TYPE    127     77     67    194
D966V9, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STYK1 MUTATED        1      0      0      2      2      1      1      0
  STYK1 WILD-TYPE     39     62     28     78     67     47     42     28
                 vv
clus              CLUS_9
  STYK1 MUTATED        0
  STYK1 WILD-TYPE     74
D966V10, multiclass
        clus
vv       STYK1 MUTATED STYK1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STYK1 MUTATED        1      0      0      0
  STYK1 WILD-TYPE     32     31     27     19
D966V11, multiclass
[1] "Remove cluster labels:" "STYK1 MUTATED"         
clus
  STYK1 MUTATED STYK1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-G5-6641 
"STYK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STYK1 MUTATED        1      0      0      0
  STYK1 WILD-TYPE     53     10     24     22
D966V12, multiclass
[1] "Remove cluster labels:" "STYK1 MUTATED"         
clus
  STYK1 MUTATED STYK1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" "STYK1 WILD-TYPE" 
     TCGA-G5-6641 
"STYK1 WILD-TYPE" 

Clustering(967) Variable = LGR4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGR4 MUTATED        2      1      0      2
  LGR4 WILD-TYPE     44     57     64     41
D967V1, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LGR4 MUTATED        1      1      3
  LGR4 WILD-TYPE     50     82     74
D967V2, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGR4 MUTATED       17      0      0      0
  LGR4 WILD-TYPE    161    183    101     20
D967V3, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LGR4 MUTATED        3      0      8
  LGR4 WILD-TYPE     84     80     92
D967V4, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LGR4 MUTATED        2      6      6
  LGR4 WILD-TYPE     87    154    132
D967V5, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LGR4 MUTATED        6      6      2
  LGR4 WILD-TYPE    176    127     70
D967V6, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGR4 MUTATED        0      7      3      7
  LGR4 WILD-TYPE    112     89     89    179
D967V7, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LGR4 MUTATED        1      3      6      1      0      2      4
  LGR4 WILD-TYPE     59     47     43     39     63    123     95
D967V8, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGR4 MUTATED        9      0      0      8
  LGR4 WILD-TYPE    121     78     68    188
D967V9, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LGR4 MUTATED        3      1      1      2      6      0      2      0      2
  LGR4 WILD-TYPE     37     61     27     78     63     48     41     28     72
D967V10, multiclass
        clus
vv       LGR4 MUTATED LGR4 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGR4 MUTATED        0      0      0      2
  LGR4 WILD-TYPE     33     31     27     17
D967V11, multiclass
[1] "Remove cluster labels:" "LGR4 MUTATED"          
clus
  LGR4 MUTATED LGR4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGR4 MUTATED        2      0      0      0
  LGR4 WILD-TYPE     52     10     24     22
D967V12, multiclass
[1] "Remove cluster labels:" "LGR4 MUTATED"          
clus
  LGR4 MUTATED LGR4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" "LGR4 WILD-TYPE" 

Clustering(968) Variable = C14ORF28 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF28 MUTATED        0      0      0      2
  C14ORF28 WILD-TYPE     46     58     64     41
D968V1, multiclass
[1] "Remove cluster labels:" "C14ORF28 MUTATED"      
clus
  C14ORF28 MUTATED C14ORF28 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF28 MUTATED        1      0      1
  C14ORF28 WILD-TYPE     50     83     76
D968V2, multiclass
[1] "Remove cluster labels:" "C14ORF28 MUTATED"      
clus
  C14ORF28 MUTATED C14ORF28 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF28 MUTATED        4      0      1      0
  C14ORF28 WILD-TYPE    174    183    100     20
D968V3, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF28 MUTATED        2      0      1
  C14ORF28 WILD-TYPE     85     80     99
D968V4, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF28 MUTATED        0      1      4
  C14ORF28 WILD-TYPE     89    159    134
D968V5, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                1                159
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF28 MUTATED        4      1      0
  C14ORF28 WILD-TYPE    178    132     72
D968V6, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                1                132
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF28 MUTATED        0      1      2      2
  C14ORF28 WILD-TYPE    112     95     90    184
D968V7, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF28 MUTATED        1      0      1      0      2      0      1
  C14ORF28 WILD-TYPE     59     50     48     40     61    125     98
D968V8, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF28 MUTATED        1      2      0      1
  C14ORF28 WILD-TYPE    129     76     68    195
D968V9, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF28 MUTATED        0      2      0      0      1      0      1      0
  C14ORF28 WILD-TYPE     40     60     28     80     68     48     42     28
                    vv
clus                 CLUS_9
  C14ORF28 MUTATED        0
  C14ORF28 WILD-TYPE     74
D968V10, multiclass
        clus
vv       C14ORF28 MUTATED C14ORF28 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF28 MUTATED        0      1      0      0
  C14ORF28 WILD-TYPE     33     30     27     19
D968V11, multiclass
[1] "Remove cluster labels:" "C14ORF28 MUTATED"      
clus
  C14ORF28 MUTATED C14ORF28 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6704         TCGA-F4-6805 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6808         TCGA-F4-6809 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-G5-6641 
"C14ORF28 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF28 MUTATED        1      0      0      0
  C14ORF28 WILD-TYPE     53     10     24     22
D968V12, multiclass
[1] "Remove cluster labels:" "C14ORF28 MUTATED"      
clus
  C14ORF28 MUTATED C14ORF28 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6704         TCGA-F4-6805 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6808         TCGA-F4-6809 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" "C14ORF28 WILD-TYPE" 
        TCGA-G5-6641 
"C14ORF28 WILD-TYPE" 

Clustering(969) Variable = ACTL6A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        3      0      0      2
  ACTL6A WILD-TYPE     43     58     64     41
D969V1, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        4      0      1
  ACTL6A WILD-TYPE     47     83     76
D969V2, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        6      0      0      0
  ACTL6A WILD-TYPE    172    183    101     20
D969V3, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        1      0      1
  ACTL6A WILD-TYPE     86     80     99
D969V4, multiclass
[1] "Remove cluster labels:" "ACTL6A MUTATED"        
clus
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3492 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510       TCGA-AA-3511 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662       TCGA-AA-3663 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713       TCGA-AD-5900 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889       TCGA-AD-6890 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901       TCGA-AD-6963 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742       TCGA-AG-A01W 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-6746       TCGA-CK-6747 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917       TCGA-CL-5918 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-5538 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929       TCGA-D5-6930 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000       TCGA-DC-5337 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G5-6641 
"ACTL6A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        0      2      5
  ACTL6A WILD-TYPE     89    158    133
D969V5, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        4      1      2
  ACTL6A WILD-TYPE    178    132     70
D969V6, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        0      0      2      5
  ACTL6A WILD-TYPE    112     96     90    181
D969V7, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              0               96
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTL6A MUTATED        1      0      2      0      0      0      4
  ACTL6A WILD-TYPE     59     50     47     40     63    125     95
D969V8, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        1      1      0      4
  ACTL6A WILD-TYPE    129     77     68    192
D969V9, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACTL6A MUTATED        0      2      0      0      4      0      0      0
  ACTL6A WILD-TYPE     40     60     28     80     65     48     43     28
                  vv
clus               CLUS_9
  ACTL6A MUTATED        0
  ACTL6A WILD-TYPE     74
D969V10, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        1      0      0      1
  ACTL6A WILD-TYPE     32     31     27     18
D969V11, multiclass
[1] "Remove cluster labels:" "ACTL6A MUTATED"        
clus
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        2      0      0      0
  ACTL6A WILD-TYPE     52     10     24     22
D969V12, multiclass
[1] "Remove cluster labels:" "ACTL6A MUTATED"        
clus
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" "ACTL6A WILD-TYPE" 

Clustering(970) Variable = UPF3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3A MUTATED        1      0      0      1
  UPF3A WILD-TYPE     45     58     64     42
D970V1, multiclass
[1] "Remove cluster labels:" "UPF3A MUTATED"         
clus
  UPF3A MUTATED UPF3A WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AY-4071 
"UPF3A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3A MUTATED        2      0      0
  UPF3A WILD-TYPE     49     83     77
D970V2, multiclass
[1] "Remove cluster labels:" "UPF3A MUTATED"         
clus
  UPF3A MUTATED UPF3A WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AY-4071 
"UPF3A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3A MUTATED        8      0      1      0
  UPF3A WILD-TYPE    170    183    100     20
D970V3, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3A MUTATED        2      1      4
  UPF3A WILD-TYPE     85     79     96
D970V4, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3A MUTATED        1      3      1
  UPF3A WILD-TYPE     88    157    137
D970V5, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3A MUTATED        2      2      1
  UPF3A WILD-TYPE    180    131     71
D970V6, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3A MUTATED        0      4      1      4
  UPF3A WILD-TYPE    112     92     91    182
D970V7, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UPF3A MUTATED        0      0      5      0      0      1      3
  UPF3A WILD-TYPE     60     50     44     40     63    124     96
D970V8, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3A MUTATED        3      1      0      5
  UPF3A WILD-TYPE    127     77     68    191
D970V9, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UPF3A MUTATED        0      1      0      0      6      0      0      0
  UPF3A WILD-TYPE     40     61     28     80     63     48     43     28
                 vv
clus              CLUS_9
  UPF3A MUTATED        2
  UPF3A WILD-TYPE     72
D970V10, multiclass
        clus
vv       UPF3A MUTATED UPF3A WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3A MUTATED        0      0      0      2
  UPF3A WILD-TYPE     33     31     27     17
D970V11, multiclass
[1] "Remove cluster labels:" "UPF3A MUTATED"         
clus
  UPF3A MUTATED UPF3A WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3A MUTATED        1      0      1      0
  UPF3A WILD-TYPE     53     10     23     22
D970V12, multiclass
[1] "Remove cluster labels:" "UPF3A MUTATED"         
clus
  UPF3A MUTATED UPF3A WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" "UPF3A WILD-TYPE" 

Clustering(971) Variable = MDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDH1 MUTATED        1      0      0      0
  MDH1 WILD-TYPE     45     58     64     43
D971V1, multiclass
[1] "Remove cluster labels:" "MDH1 MUTATED"          
clus
  MDH1 MUTATED MDH1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDH1 MUTATED        1      0      0
  MDH1 WILD-TYPE     50     83     77
D971V2, multiclass
[1] "Remove cluster labels:" "MDH1 MUTATED"          
clus
  MDH1 MUTATED MDH1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MDH1 WILD-TYPE" "MDH1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDH1 MUTATED        4      3      1      0
  MDH1 WILD-TYPE    174    180    100     20
D971V3, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDH1 MUTATED        4      2      1
  MDH1 WILD-TYPE     83     78     99
D971V4, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDH1 MUTATED        1      2      5
  MDH1 WILD-TYPE     88    158    133
D971V5, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDH1 MUTATED        4      3      1
  MDH1 WILD-TYPE    178    130     71
D971V6, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDH1 MUTATED        2      2      3      1
  MDH1 WILD-TYPE    110     94     89    185
D971V7, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MDH1 MUTATED        1      3      1      0      2      0      1
  MDH1 WILD-TYPE     59     47     48     40     61    125     98
D971V8, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDH1 MUTATED        4      1      1      2
  MDH1 WILD-TYPE    126     77     67    194
D971V9, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MDH1 MUTATED        2      1      0      0      1      0      3      0      1
  MDH1 WILD-TYPE     38     61     28     80     68     48     40     28     73
D971V10, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDH1 MUTATED        3      0      0      0
  MDH1 WILD-TYPE     30     31     27     19
D971V11, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDH1 MUTATED        2      0      0      1
  MDH1 WILD-TYPE     52     10     24     21
D971V12, multiclass
        clus
vv       MDH1 MUTATED MDH1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(972) Variable = MYH11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH11 MUTATED        9      1      0      8
  MYH11 WILD-TYPE     37     57     64     35
D972V1, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             9              37
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             8              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH11 MUTATED       13      2      3
  MYH11 WILD-TYPE     38     81     74
D972V2, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1            13              38
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH11 MUTATED       25      5      3      2
  MYH11 WILD-TYPE    153    178     98     18
D972V3, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1            25             153
  CLUS_2             5             178
  CLUS_3             3              98
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH11 MUTATED        5      2      8
  MYH11 WILD-TYPE     82     78     92
D972V4, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH11 MUTATED        5      7     14
  MYH11 WILD-TYPE     84    153    124
D972V5, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             7             153
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH11 MUTATED       14      8      4
  MYH11 WILD-TYPE    168    125     68
D972V6, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH11 MUTATED        3      2     10     20
  MYH11 WILD-TYPE    109     94     82    166
D972V7, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3            10              82
  CLUS_4            20             166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH11 MUTATED        3      2      8      1      2      3     16
  MYH11 WILD-TYPE     57     48     41     39     61    122     83
D972V8, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7            16              83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH11 MUTATED       10      4      1     19
  MYH11 WILD-TYPE    120     74     67    177
D972V9, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4            19             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYH11 MUTATED        4      5      2      4     15      0      1      0
  MYH11 WILD-TYPE     36     57     26     76     54     48     42     28
                 vv
clus              CLUS_9
  MYH11 MUTATED        3
  MYH11 WILD-TYPE     71
D972V10, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5            15              54
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH11 MUTATED        3      0      0      4
  MYH11 WILD-TYPE     30     31     27     15
D972V11, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH11 MUTATED        6      0      1      0
  MYH11 WILD-TYPE     48     10     23     22
D972V12, multiclass
        clus
vv       MYH11 MUTATED MYH11 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(973) Variable = KLF11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF11 MUTATED        1      0      1      0
  KLF11 WILD-TYPE     45     58     63     43
D973V1, multiclass
[1] "Remove cluster labels:" "KLF11 MUTATED"         
clus
  KLF11 MUTATED KLF11 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AY-4071 
"KLF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF11 MUTATED        1      0      1
  KLF11 WILD-TYPE     50     83     76
D973V2, multiclass
[1] "Remove cluster labels:" "KLF11 MUTATED"         
clus
  KLF11 MUTATED KLF11 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AY-4071 
"KLF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF11 MUTATED        4      2      2      0
  KLF11 WILD-TYPE    174    181     99     20
D973V3, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF11 MUTATED        2      0      4
  KLF11 WILD-TYPE     85     80     96
D973V4, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF11 MUTATED        0      3      2
  KLF11 WILD-TYPE     89    157    136
D973V5, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF11 MUTATED        3      2      0
  KLF11 WILD-TYPE    179    131     72
D973V6, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF11 MUTATED        1      3      2      2
  KLF11 WILD-TYPE    111     93     90    184
D973V7, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLF11 MUTATED        0      2      2      1      1      1      1
  KLF11 WILD-TYPE     60     48     47     39     62    124     98
D973V8, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF11 MUTATED        2      3      0      2
  KLF11 WILD-TYPE    128     75     68    194
D973V9, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLF11 MUTATED        0      4      0      1      1      0      0      1
  KLF11 WILD-TYPE     40     58     28     79     68     48     43     27
                 vv
clus              CLUS_9
  KLF11 MUTATED        0
  KLF11 WILD-TYPE     74
D973V10, multiclass
        clus
vv       KLF11 MUTATED KLF11 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF11 MUTATED        0      1      0      0
  KLF11 WILD-TYPE     33     30     27     19
D973V11, multiclass
[1] "Remove cluster labels:" "KLF11 MUTATED"         
clus
  KLF11 MUTATED KLF11 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-G5-6641 
"KLF11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF11 MUTATED        1      0      0      0
  KLF11 WILD-TYPE     53     10     24     22
D973V12, multiclass
[1] "Remove cluster labels:" "KLF11 MUTATED"         
clus
  KLF11 MUTATED KLF11 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" "KLF11 WILD-TYPE" 
     TCGA-G5-6641 
"KLF11 WILD-TYPE" 

Clustering(974) Variable = MED12L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED        5      1      1      5
  MED12L WILD-TYPE     41     57     63     38
D974V1, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              5               41
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MED12L MUTATED        7      3      2
  MED12L WILD-TYPE     44     80     75
D974V2, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              7               44
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED       22      6      2      1
  MED12L WILD-TYPE    156    177     99     19
D974V3, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1             22              156
  CLUS_2              6              177
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MED12L MUTATED        8      1     10
  MED12L WILD-TYPE     79     79     90
D974V4, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              8               79
  CLUS_2              1               79
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MED12L MUTATED        2     10     10
  MED12L WILD-TYPE     87    150    128
D974V5, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              2               87
  CLUS_2             10              150
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MED12L MUTATED       12      8      2
  MED12L WILD-TYPE    170    125     70
D974V6, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1             12              170
  CLUS_2              8              125
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED        2      8      7     14
  MED12L WILD-TYPE    110     88     85    172
D974V7, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              7               85
  CLUS_4             14              172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED12L MUTATED        2      4      6      2      4      4      9
  MED12L WILD-TYPE     58     46     43     38     59    121     90
D974V8, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              6               43
  CLUS_4              2               38
  CLUS_5              4               59
  CLUS_6              4              121
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED       10      5      0     14
  MED12L WILD-TYPE    120     73     68    182
D974V9, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1             10              120
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4             14              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MED12L MUTATED        3      4      2      4      7      3      2      1
  MED12L WILD-TYPE     37     58     26     76     62     45     41     27
                  vv
clus               CLUS_9
  MED12L MUTATED        3
  MED12L WILD-TYPE     71
D974V10, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              3               37
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              4               76
  CLUS_5              7               62
  CLUS_6              3               45
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED        0      2      0      2
  MED12L WILD-TYPE     33     29     27     17
D974V11, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12L MUTATED        2      0      1      1
  MED12L WILD-TYPE     52     10     23     21
D974V12, multiclass
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(975) Variable = ZNF620 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF620 MUTATED        1      0      0      2
  ZNF620 WILD-TYPE     45     58     64     41
D975V1, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF620 MUTATED        2      0      1
  ZNF620 WILD-TYPE     49     83     76
D975V2, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF620 MUTATED        8      0      0      1
  ZNF620 WILD-TYPE    170    183    101     19
D975V3, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF620 MUTATED        2      0      3
  ZNF620 WILD-TYPE     85     80     97
D975V4, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF620 MUTATED        2      2      4
  ZNF620 WILD-TYPE     87    158    134
D975V5, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF620 MUTATED        6      1      1
  ZNF620 WILD-TYPE    176    132     71
D975V6, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF620 MUTATED        0      5      1      3
  ZNF620 WILD-TYPE    112     91     91    183
D975V7, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF620 MUTATED        0      2      2      1      1      0      3
  ZNF620 WILD-TYPE     60     48     47     39     62    125     96
D975V8, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF620 MUTATED        4      1      0      4
  ZNF620 WILD-TYPE    126     77     68    192
D975V9, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF620 MUTATED        2      1      1      0      3      0      1      0
  ZNF620 WILD-TYPE     38     61     27     80     66     48     42     28
                  vv
clus               CLUS_9
  ZNF620 MUTATED        1
  ZNF620 WILD-TYPE     73
D975V10, multiclass
        clus
vv       ZNF620 MUTATED ZNF620 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF620 MUTATED        0      1      0      0
  ZNF620 WILD-TYPE     33     30     27     19
D975V11, multiclass
[1] "Remove cluster labels:" "ZNF620 MUTATED"        
clus
  ZNF620 MUTATED ZNF620 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF620 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF620 MUTATED        1      0      0      0
  ZNF620 WILD-TYPE     53     10     24     22
D975V12, multiclass
[1] "Remove cluster labels:" "ZNF620 MUTATED"        
clus
  ZNF620 MUTATED ZNF620 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" "ZNF620 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF620 WILD-TYPE" 

Clustering(976) Variable = UGT1A7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A7 MUTATED        0      0      0      2
  UGT1A7 WILD-TYPE     46     58     64     41
D976V1, multiclass
[1] "Remove cluster labels:" "UGT1A7 MUTATED"        
clus
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AY-4071 
"UGT1A7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A7 MUTATED        1      1      0
  UGT1A7 WILD-TYPE     50     82     77
D976V2, multiclass
[1] "Remove cluster labels:" "UGT1A7 MUTATED"        
clus
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AY-4071 
"UGT1A7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A7 MUTATED        5      2      1      0
  UGT1A7 WILD-TYPE    173    181    100     20
D976V3, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A7 MUTATED        2      1      3
  UGT1A7 WILD-TYPE     85     79     97
D976V4, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A7 MUTATED        0      4      4
  UGT1A7 WILD-TYPE     89    156    134
D976V5, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A7 MUTATED        4      3      1
  UGT1A7 WILD-TYPE    178    130     71
D976V6, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A7 MUTATED        2      2      2      2
  UGT1A7 WILD-TYPE    110     94     90    184
D976V7, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UGT1A7 MUTATED        2      2      2      0      0      0      2
  UGT1A7 WILD-TYPE     58     48     47     40     63    125     97
D976V8, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A7 MUTATED        3      1      1      2
  UGT1A7 WILD-TYPE    127     77     67    194
D976V9, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UGT1A7 MUTATED        0      1      2      0      1      1      1      0
  UGT1A7 WILD-TYPE     40     61     26     80     68     47     42     28
                  vv
clus               CLUS_9
  UGT1A7 MUTATED        1
  UGT1A7 WILD-TYPE     73
D976V10, multiclass
        clus
vv       UGT1A7 MUTATED UGT1A7 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A7 MUTATED        1      0      0      0
  UGT1A7 WILD-TYPE     32     31     27     19
D976V11, multiclass
[1] "Remove cluster labels:" "UGT1A7 MUTATED"        
clus
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D9       TCGA-DM-A1DA 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-G5-6641 
"UGT1A7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A7 MUTATED        0      0      0      1
  UGT1A7 WILD-TYPE     54     10     24     21
D976V12, multiclass
[1] "Remove cluster labels:" "UGT1A7 MUTATED"        
clus
  UGT1A7 MUTATED UGT1A7 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D9       TCGA-DM-A1DA 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" "UGT1A7 WILD-TYPE" 
      TCGA-G5-6641 
"UGT1A7 WILD-TYPE" 

Clustering(977) Variable = UST MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UST MUTATED        0      0      1      0
  UST WILD-TYPE     46     58     63     43
D977V1, multiclass
[1] "Remove cluster labels:" "UST MUTATED"           
clus
  UST MUTATED UST WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3956    TCGA-AA-3966 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UST MUTATED        0      1      0
  UST WILD-TYPE     51     82     77
D977V2, multiclass
[1] "Remove cluster labels:" "UST MUTATED"           
clus
  UST MUTATED UST WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3956    TCGA-AA-3966 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" "UST WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UST MUTATED        4      5      1      1
  UST WILD-TYPE    174    178    100     19
D977V3, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           4           174
  CLUS_2           5           178
  CLUS_3           1           100
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UST MUTATED        3      3      4
  UST WILD-TYPE     84     77     96
D977V4, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           3            84
  CLUS_2           3            77
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UST MUTATED        2      2      7
  UST WILD-TYPE     87    158    131
D977V5, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           2            87
  CLUS_2           2           158
  CLUS_3           7           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UST MUTATED        7      2      2
  UST WILD-TYPE    175    131     70
D977V6, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           7           175
  CLUS_2           2           131
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UST MUTATED        2      5      3      1
  UST WILD-TYPE    110     91     89    185
D977V7, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           2           110
  CLUS_2           5            91
  CLUS_3           3            89
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UST MUTATED        1      3      2      1      2      1      1
  UST WILD-TYPE     59     47     47     39     61    124     98
D977V8, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           1            59
  CLUS_2           3            47
  CLUS_3           2            47
  CLUS_4           1            39
  CLUS_5           2            61
  CLUS_6           1           124
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UST MUTATED        5      2      2      2
  UST WILD-TYPE    125     76     66    194
D977V9, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           5           125
  CLUS_2           2            76
  CLUS_3           2            66
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UST MUTATED        2      4      0      0      1      0      2      0      2
  UST WILD-TYPE     38     58     28     80     68     48     41     28     72
D977V10, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           2            38
  CLUS_2           4            58
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           2            41
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UST MUTATED        1      2      1      1
  UST WILD-TYPE     32     29     26     18
D977V11, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           1            32
  CLUS_2           2            29
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UST MUTATED        4      1      0      0
  UST WILD-TYPE     50      9     24     22
D977V12, multiclass
        clus
vv       UST MUTATED UST WILD-TYPE
  CLUS_1           4            50
  CLUS_2           1             9
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(978) Variable = NDUFAF1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFAF1 MUTATED        0      0      0      0
  NDUFAF1 WILD-TYPE     46     58     64     43
D978V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NDUFAF1 MUTATED        0      0      0
  NDUFAF1 WILD-TYPE     51     83     77
D978V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFAF1 MUTATED        5      1      1      0
  NDUFAF1 WILD-TYPE    173    182    100     20
D978V3, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NDUFAF1 MUTATED        1      2      4
  NDUFAF1 WILD-TYPE     86     78     96
D978V4, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NDUFAF1 MUTATED        3      1      2
  NDUFAF1 WILD-TYPE     86    159    136
D978V5, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               1               159
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NDUFAF1 MUTATED        4      1      1
  NDUFAF1 WILD-TYPE    178    132     71
D978V6, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFAF1 MUTATED        3      3      1      0
  NDUFAF1 WILD-TYPE    109     93     91    186
D978V7, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NDUFAF1 MUTATED        2      1      2      1      1      0      0
  NDUFAF1 WILD-TYPE     58     49     47     39     62    125     99
D978V8, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFAF1 MUTATED        4      2      0      1
  NDUFAF1 WILD-TYPE    126     76     68    195
D978V9, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NDUFAF1 MUTATED        3      2      0      1      1      0      0      0
  NDUFAF1 WILD-TYPE     37     60     28     79     68     48     43     28
                   vv
clus                CLUS_9
  NDUFAF1 MUTATED        0
  NDUFAF1 WILD-TYPE     74
D978V10, multiclass
        clus
vv       NDUFAF1 MUTATED NDUFAF1 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFAF1 MUTATED        1      0      0      0
  NDUFAF1 WILD-TYPE     32     31     27     19
D978V11, multiclass
[1] "Remove cluster labels:" "NDUFAF1 MUTATED"       
clus
  NDUFAF1 MUTATED NDUFAF1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-G5-6641 
"NDUFAF1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFAF1 MUTATED        1      0      0      0
  NDUFAF1 WILD-TYPE     53     10     24     22
D978V12, multiclass
[1] "Remove cluster labels:" "NDUFAF1 MUTATED"       
clus
  NDUFAF1 MUTATED NDUFAF1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" "NDUFAF1 WILD-TYPE" 
       TCGA-G5-6641 
"NDUFAF1 WILD-TYPE" 

Clustering(979) Variable = ENPP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP1 MUTATED        1      0      1      2
  ENPP1 WILD-TYPE     45     58     63     41
D979V1, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP1 MUTATED        1      1      2
  ENPP1 WILD-TYPE     50     82     75
D979V2, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP1 MUTATED        9      3      3      0
  ENPP1 WILD-TYPE    169    180     98     20
D979V3, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP1 MUTATED        4      1      6
  ENPP1 WILD-TYPE     83     79     94
D979V4, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP1 MUTATED        1      7      6
  ENPP1 WILD-TYPE     88    153    132
D979V5, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ENPP1 MUTATED        7      6      1
  ENPP1 WILD-TYPE    175    127     71
D979V6, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP1 MUTATED        2      6      3      4
  ENPP1 WILD-TYPE    110     90     89    182
D979V7, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENPP1 MUTATED        2      3      5      0      2      2      1
  ENPP1 WILD-TYPE     58     47     44     40     61    123     98
D979V8, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP1 MUTATED        6      2      1      5
  ENPP1 WILD-TYPE    124     76     67    191
D979V9, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ENPP1 MUTATED        0      4      1      2      3      1      1      0
  ENPP1 WILD-TYPE     40     58     27     78     66     47     42     28
                 vv
clus              CLUS_9
  ENPP1 MUTATED        2
  ENPP1 WILD-TYPE     72
D979V10, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP1 MUTATED        0      0      1      2
  ENPP1 WILD-TYPE     33     31     26     17
D979V11, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENPP1 MUTATED        2      0      1      0
  ENPP1 WILD-TYPE     52     10     23     22
D979V12, multiclass
        clus
vv       ENPP1 MUTATED ENPP1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(980) Variable = CASP4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP4 MUTATED        0      1      0      1
  CASP4 WILD-TYPE     46     57     64     42
D980V1, multiclass
[1] "Remove cluster labels:" "CASP4 MUTATED"         
clus
  CASP4 MUTATED CASP4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3973 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AY-4071 
"CASP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP4 MUTATED        0      0      2
  CASP4 WILD-TYPE     51     83     75
D980V2, multiclass
[1] "Remove cluster labels:" "CASP4 MUTATED"         
clus
  CASP4 MUTATED CASP4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3973 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AY-4071 
"CASP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP4 MUTATED        6      3      1      0
  CASP4 WILD-TYPE    172    180    100     20
D980V3, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP4 MUTATED        2      2      4
  CASP4 WILD-TYPE     85     78     96
D980V4, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP4 MUTATED        0      6      3
  CASP4 WILD-TYPE     89    154    135
D980V5, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP4 MUTATED        4      4      1
  CASP4 WILD-TYPE    178    129     71
D980V6, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP4 MUTATED        2      3      3      2
  CASP4 WILD-TYPE    110     93     89    184
D980V7, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP4 MUTATED        3      1      3      0      2      1      0
  CASP4 WILD-TYPE     57     49     46     40     61    124     99
D980V8, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP4 MUTATED        5      2      1      2
  CASP4 WILD-TYPE    125     76     67    194
D980V9, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASP4 MUTATED        2      2      0      1      2      0      2      0
  CASP4 WILD-TYPE     38     60     28     79     67     48     41     28
                 vv
clus              CLUS_9
  CASP4 MUTATED        1
  CASP4 WILD-TYPE     73
D980V10, multiclass
        clus
vv       CASP4 MUTATED CASP4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP4 MUTATED        1      0      1      0
  CASP4 WILD-TYPE     32     31     26     19
D980V11, multiclass
[1] "Remove cluster labels:" "CASP4 MUTATED"         
clus
  CASP4 MUTATED CASP4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-EI-6506 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP4 MUTATED        1      0      1      0
  CASP4 WILD-TYPE     53     10     23     22
D980V12, multiclass
[1] "Remove cluster labels:" "CASP4 MUTATED"         
clus
  CASP4 MUTATED CASP4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-EI-6506 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" "CASP4 WILD-TYPE" 

Clustering(981) Variable = STK36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        2      0      1      0
  STK36 WILD-TYPE     44     58     63     43
D981V1, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        2      1      0
  STK36 WILD-TYPE     49     82     77
D981V2, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED       10      2      4      2
  STK36 WILD-TYPE    168    181     97     18
D981V3, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             4              97
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        8      2      5
  STK36 WILD-TYPE     79     78     95
D981V4, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        6      2      8
  STK36 WILD-TYPE     83    158    130
D981V5, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             2             158
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED       11      3      2
  STK36 WILD-TYPE    171    130     70
D981V6, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        2      6      7      3
  STK36 WILD-TYPE    110     90     85    183
D981V7, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK36 MUTATED        2      3      4      1      5      1      2
  STK36 WILD-TYPE     58     47     45     39     58    124     97
D981V8, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             5              58
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED       10      4      0      3
  STK36 WILD-TYPE    120     74     68    193
D981V9, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STK36 MUTATED        3      5      1      2      3      0      1      0
  STK36 WILD-TYPE     37     57     27     78     66     48     42     28
                 vv
clus              CLUS_9
  STK36 MUTATED        2
  STK36 WILD-TYPE     72
D981V10, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        1      4      0      2
  STK36 WILD-TYPE     32     27     27     17
D981V11, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             4              27
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        6      1      0      0
  STK36 WILD-TYPE     48      9     24     22
D981V12, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(982) Variable = KRT19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT19 MUTATED        1      0      0      1
  KRT19 WILD-TYPE     45     58     64     42
D982V1, multiclass
[1] "Remove cluster labels:" "KRT19 MUTATED"         
clus
  KRT19 MUTATED KRT19 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AY-4071 
"KRT19 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT19 MUTATED        1      1      0
  KRT19 WILD-TYPE     50     82     77
D982V2, multiclass
[1] "Remove cluster labels:" "KRT19 MUTATED"         
clus
  KRT19 MUTATED KRT19 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AY-4071 
"KRT19 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT19 MUTATED        4      0      0      0
  KRT19 WILD-TYPE    174    183    101     20
D982V3, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT19 MUTATED        1      0      1
  KRT19 WILD-TYPE     86     80     99
D982V4, multiclass
[1] "Remove cluster labels:" "KRT19 MUTATED"         
clus
  KRT19 MUTATED KRT19 WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3663      TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AD-6890      TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AF-2693      TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-5538 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929      TCGA-D5-6930 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000      TCGA-DC-5337 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28C 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DM-A28H 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G5-6641 
"KRT19 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT19 MUTATED        0      2      2
  KRT19 WILD-TYPE     89    158    136
D982V5, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT19 MUTATED        1      3      0
  KRT19 WILD-TYPE    181    130     72
D982V6, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT19 MUTATED        0      2      0      2
  KRT19 WILD-TYPE    112     94     92    184
D982V7, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT19 MUTATED        0      0      2      0      0      0      2
  KRT19 WILD-TYPE     60     50     47     40     63    125     97
D982V8, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT19 MUTATED        2      0      0      2
  KRT19 WILD-TYPE    128     78     68    194
D982V9, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRT19 MUTATED        0      0      1      0      2      0      0      1
  KRT19 WILD-TYPE     40     62     27     80     67     48     43     27
                 vv
clus              CLUS_9
  KRT19 MUTATED        0
  KRT19 WILD-TYPE     74
D982V10, multiclass
        clus
vv       KRT19 MUTATED KRT19 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT19 MUTATED        0      0      0      1
  KRT19 WILD-TYPE     33     31     27     18
D982V11, multiclass
[1] "Remove cluster labels:" "KRT19 MUTATED"         
clus
  KRT19 MUTATED KRT19 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G5-6641 
"KRT19 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT19 MUTATED        0      0      1      0
  KRT19 WILD-TYPE     54     10     23     22
D982V12, multiclass
[1] "Remove cluster labels:" "KRT19 MUTATED"         
clus
  KRT19 MUTATED KRT19 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" "KRT19 WILD-TYPE" 
     TCGA-G5-6641 
"KRT19 WILD-TYPE" 

Clustering(983) Variable = KIF16B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF16B MUTATED        6      0      0      4
  KIF16B WILD-TYPE     40     58     64     39
D983V1, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              6               40
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF16B MUTATED        8      0      2
  KIF16B WILD-TYPE     43     83     75
D983V2, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              8               43
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF16B MUTATED       21      3      4      2
  KIF16B WILD-TYPE    157    180     97     18
D983V3, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1             21              157
  CLUS_2              3              180
  CLUS_3              4               97
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF16B MUTATED        5      6      9
  KIF16B WILD-TYPE     82     74     91
D983V4, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              5               82
  CLUS_2              6               74
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF16B MUTATED        5     10      9
  KIF16B WILD-TYPE     84    150    129
D983V5, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              5               84
  CLUS_2             10              150
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF16B MUTATED       12     11      1
  KIF16B WILD-TYPE    170    122     71
D983V6, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1             12              170
  CLUS_2             11              122
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF16B MUTATED        6      8      6     11
  KIF16B WILD-TYPE    106     88     86    175
D983V7, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              6              106
  CLUS_2              8               88
  CLUS_3              6               86
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF16B MUTATED        4      4      7      1      4      0     11
  KIF16B WILD-TYPE     56     46     42     39     59    125     88
D983V8, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              4               56
  CLUS_2              4               46
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              0              125
  CLUS_7             11               88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF16B MUTATED       13      2      2     12
  KIF16B WILD-TYPE    117     76     66    184
D983V9, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1             13              117
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF16B MUTATED        4      3      2      3     12      2      1      1
  KIF16B WILD-TYPE     36     59     26     77     57     46     42     27
                  vv
clus               CLUS_9
  KIF16B MUTATED        1
  KIF16B WILD-TYPE     73
D983V10, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              4               36
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5             12               57
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF16B MUTATED        1      0      2      3
  KIF16B WILD-TYPE     32     31     25     16
D983V11, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF16B MUTATED        3      1      2      0
  KIF16B WILD-TYPE     51      9     22     22
D983V12, multiclass
        clus
vv       KIF16B MUTATED KIF16B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(984) Variable = ZHX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        0      0      0      2
  ZHX1 WILD-TYPE     46     58     64     41
D984V1, multiclass
[1] "Remove cluster labels:" "ZHX1 MUTATED"          
clus
  ZHX1 MUTATED ZHX1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AY-4071 
"ZHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX1 MUTATED        0      1      1
  ZHX1 WILD-TYPE     51     82     76
D984V2, multiclass
[1] "Remove cluster labels:" "ZHX1 MUTATED"          
clus
  ZHX1 MUTATED ZHX1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" "ZHX1 WILD-TYPE" 
    TCGA-AY-4071 
"ZHX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        7      3      1      0
  ZHX1 WILD-TYPE    171    180    100     20
D984V3, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX1 MUTATED        5      1      3
  ZHX1 WILD-TYPE     82     79     97
D984V4, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX1 MUTATED        0      6      4
  ZHX1 WILD-TYPE     89    154    134
D984V5, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX1 MUTATED        4      5      1
  ZHX1 WILD-TYPE    178    128     71
D984V6, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        4      1      3      3
  ZHX1 WILD-TYPE    108     95     89    183
D984V7, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZHX1 MUTATED        3      1      2      0      3      0      2
  ZHX1 WILD-TYPE     57     49     47     40     60    125     97
D984V8, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        3      2      3      3
  ZHX1 WILD-TYPE    127     76     65    193
D984V9, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            3             65
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZHX1 MUTATED        0      3      1      0      2      2      2      0      1
  ZHX1 WILD-TYPE     40     59     27     80     67     46     41     28     73
D984V10, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        1      1      0      2
  ZHX1 WILD-TYPE     32     30     27     17
D984V11, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX1 MUTATED        2      0      1      1
  ZHX1 WILD-TYPE     52     10     23     21
D984V12, multiclass
        clus
vv       ZHX1 MUTATED ZHX1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(985) Variable = ZNF658 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF658 MUTATED        3      2      0      3
  ZNF658 WILD-TYPE     43     56     64     40
D985V1, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF658 MUTATED        3      3      2
  ZNF658 WILD-TYPE     48     80     75
D985V2, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF658 MUTATED        8      4      2      0
  ZNF658 WILD-TYPE    170    179     99     20
D985V3, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF658 MUTATED        1      3      3
  ZNF658 WILD-TYPE     86     77     97
D985V4, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF658 MUTATED        2      3      4
  ZNF658 WILD-TYPE     87    157    134
D985V5, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF658 MUTATED        5      3      1
  ZNF658 WILD-TYPE    177    130     71
D985V6, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF658 MUTATED        3      2      2      7
  ZNF658 WILD-TYPE    109     94     90    179
D985V7, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF658 MUTATED        3      2      2      0      0      3      4
  ZNF658 WILD-TYPE     57     48     47     40     63    122     95
D985V8, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF658 MUTATED        4      1      2      6
  ZNF658 WILD-TYPE    126     77     66    190
D985V9, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF658 MUTATED        1      1      2      3      4      0      1      0
  ZNF658 WILD-TYPE     39     61     26     77     65     48     42     28
                  vv
clus               CLUS_9
  ZNF658 MUTATED        1
  ZNF658 WILD-TYPE     73
D985V10, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF658 MUTATED        1      0      1      1
  ZNF658 WILD-TYPE     32     31     26     18
D985V11, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF658 MUTATED        1      0      2      0
  ZNF658 WILD-TYPE     53     10     22     22
D985V12, multiclass
        clus
vv       ZNF658 MUTATED ZNF658 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(986) Variable = GPR141 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        3      0      0      0
  GPR141 WILD-TYPE     43     58     64     43
D986V1, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        3      0      0
  GPR141 WILD-TYPE     48     83     77
D986V2, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        8      2      1      0
  GPR141 WILD-TYPE    170    181    100     20
D986V3, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        3      1      4
  GPR141 WILD-TYPE     84     79     96
D986V4, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        2      1      7
  GPR141 WILD-TYPE     87    159    131
D986V5, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1              159
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        6      1      3
  GPR141 WILD-TYPE    176    132     69
D986V6, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        1      4      3      3
  GPR141 WILD-TYPE    111     92     89    183
D986V7, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR141 MUTATED        1      2      4      1      0      0      3
  GPR141 WILD-TYPE     59     48     45     39     63    125     96
D986V8, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        2      4      2      3
  GPR141 WILD-TYPE    128     74     66    193
D986V9, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR141 MUTATED        1      4      0      0      3      0      2      1
  GPR141 WILD-TYPE     39     58     28     80     66     48     41     27
                  vv
clus               CLUS_9
  GPR141 MUTATED        0
  GPR141 WILD-TYPE     74
D986V10, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        0      0      1      2
  GPR141 WILD-TYPE     33     31     26     17
D986V11, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        2      0      1      0
  GPR141 WILD-TYPE     52     10     23     22
D986V12, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(987) Variable = ZNF585A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585A MUTATED        4      0      1      5
  ZNF585A WILD-TYPE     42     58     63     38
D987V1, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585A MUTATED        5      2      3
  ZNF585A WILD-TYPE     46     81     74
D987V2, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               5                46
  CLUS_2               2                81
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585A MUTATED       16      2      1      0
  ZNF585A WILD-TYPE    162    181    100     20
D987V3, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1              16               162
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585A MUTATED        3      1      5
  ZNF585A WILD-TYPE     84     79     95
D987V4, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585A MUTATED        3      6      4
  ZNF585A WILD-TYPE     86    154    134
D987V5, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               3                86
  CLUS_2               6               154
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585A MUTATED        7      4      2
  ZNF585A WILD-TYPE    175    129     70
D987V6, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               7               175
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585A MUTATED        1      4      4     10
  ZNF585A WILD-TYPE    111     92     88    176
D987V7, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               4                88
  CLUS_4              10               176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF585A MUTATED        1      3      3      1      1      1      9
  ZNF585A WILD-TYPE     59     47     46     39     62    124     90
D987V8, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               9                90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585A MUTATED        4      3      1     10
  ZNF585A WILD-TYPE    126     75     67    186
D987V9, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4              10               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF585A MUTATED        1      3      3      3      6      0      1      0
  ZNF585A WILD-TYPE     39     59     25     77     63     48     42     28
                   vv
clus                CLUS_9
  ZNF585A MUTATED        1
  ZNF585A WILD-TYPE     73
D987V10, multiclass
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               3                25
  CLUS_4               3                77
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585A MUTATED        0      1      0      1
  ZNF585A WILD-TYPE     33     30     27     18
D987V11, multiclass
[1] "Remove cluster labels:" "ZNF585A MUTATED"       
clus
  ZNF585A MUTATED ZNF585A WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6536        TCGA-D5-6922 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585A MUTATED        2      0      0      0
  ZNF585A WILD-TYPE     52     10     24     22
D987V12, multiclass
[1] "Remove cluster labels:" "ZNF585A MUTATED"       
clus
  ZNF585A MUTATED ZNF585A WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6536        TCGA-D5-6922 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 

Clustering(988) Variable = DIAPH2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH2 MUTATED        3      0      3      4
  DIAPH2 WILD-TYPE     43     58     61     39
D988V1, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              3               61
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH2 MUTATED        4      2      4
  DIAPH2 WILD-TYPE     47     81     73
D988V2, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH2 MUTATED       13      6      5      0
  DIAPH2 WILD-TYPE    165    177     96     20
D988V3, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              6              177
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH2 MUTATED        3      2      9
  DIAPH2 WILD-TYPE     84     78     91
D988V4, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH2 MUTATED        4      7      8
  DIAPH2 WILD-TYPE     85    153    130
D988V5, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              7              153
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH2 MUTATED       13      4      2
  DIAPH2 WILD-TYPE    169    129     70
D988V6, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH2 MUTATED        4      3      7     11
  DIAPH2 WILD-TYPE    108     93     85    175
D988V7, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              7               85
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIAPH2 MUTATED        3      3      2      1      6      1      9
  DIAPH2 WILD-TYPE     57     47     47     39     57    124     90
D988V8, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              6               57
  CLUS_6              1              124
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH2 MUTATED        5      7      2     10
  DIAPH2 WILD-TYPE    125     71     66    186
D988V9, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              7               71
  CLUS_3              2               66
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DIAPH2 MUTATED        2      5      1      5      6      3      2      0
  DIAPH2 WILD-TYPE     38     57     27     75     63     45     41     28
                  vv
clus               CLUS_9
  DIAPH2 MUTATED        0
  DIAPH2 WILD-TYPE     74
D988V10, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              5               75
  CLUS_5              6               63
  CLUS_6              3               45
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH2 MUTATED        2      2      2      2
  DIAPH2 WILD-TYPE     31     29     25     17
D988V11, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH2 MUTATED        4      2      1      1
  DIAPH2 WILD-TYPE     50      8     23     21
D988V12, multiclass
        clus
vv       DIAPH2 MUTATED DIAPH2 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              2                8
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(989) Variable = ANKRD10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD10 MUTATED        0      0      0      1
  ANKRD10 WILD-TYPE     46     58     64     42
D989V1, multiclass
[1] "Remove cluster labels:" "ANKRD10 MUTATED"       
clus
  ANKRD10 MUTATED ANKRD10 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3526 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD10 MUTATED        1      0      0
  ANKRD10 WILD-TYPE     50     83     77
D989V2, multiclass
[1] "Remove cluster labels:" "ANKRD10 MUTATED"       
clus
  ANKRD10 MUTATED ANKRD10 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3526 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD10 MUTATED        7      1      1      0
  ANKRD10 WILD-TYPE    171    182    100     20
D989V3, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD10 MUTATED        3      1      3
  ANKRD10 WILD-TYPE     84     79     97
D989V4, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD10 MUTATED        1      4      3
  ANKRD10 WILD-TYPE     88    156    135
D989V5, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD10 MUTATED        3      5      0
  ANKRD10 WILD-TYPE    179    128     72
D989V6, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               5               128
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD10 MUTATED        0      3      5      1
  ANKRD10 WILD-TYPE    112     93     87    185
D989V7, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               5                87
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD10 MUTATED        0      1      3      0      2      0      3
  ANKRD10 WILD-TYPE     60     49     46     40     61    125     96
D989V8, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD10 MUTATED        0      3      0      6
  ANKRD10 WILD-TYPE    130     75     68    190
D989V9, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               0               130
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD10 MUTATED        0      3      0      0      5      0      0      0
  ANKRD10 WILD-TYPE     40     59     28     80     64     48     43     28
                   vv
clus                CLUS_9
  ANKRD10 MUTATED        1
  ANKRD10 WILD-TYPE     73
D989V10, multiclass
        clus
vv       ANKRD10 MUTATED ANKRD10 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD10 MUTATED        0      0      0      1
  ANKRD10 WILD-TYPE     33     31     27     18
D989V11, multiclass
[1] "Remove cluster labels:" "ANKRD10 MUTATED"       
clus
  ANKRD10 MUTATED ANKRD10 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-F4-6459        TCGA-F4-6460 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-G5-6641 
"ANKRD10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD10 MUTATED        0      0      1      0
  ANKRD10 WILD-TYPE     54     10     23     22
D989V12, multiclass
[1] "Remove cluster labels:" "ANKRD10 MUTATED"       
clus
  ANKRD10 MUTATED ANKRD10 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-F4-6459        TCGA-F4-6460 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" "ANKRD10 WILD-TYPE" 
       TCGA-G5-6641 
"ANKRD10 WILD-TYPE" 

Clustering(990) Variable = ASPG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPG MUTATED        1      0      0      0
  ASPG WILD-TYPE     45     58     64     43
D990V1, multiclass
[1] "Remove cluster labels:" "ASPG MUTATED"          
clus
  ASPG MUTATED ASPG WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3930     TCGA-AA-3939 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPG MUTATED        1      0      0
  ASPG WILD-TYPE     50     83     77
D990V2, multiclass
[1] "Remove cluster labels:" "ASPG MUTATED"          
clus
  ASPG MUTATED ASPG WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3930     TCGA-AA-3939 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPG MUTATED        6      1      0      0
  ASPG WILD-TYPE    172    182    101     20
D990V3, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPG MUTATED        4      0      2
  ASPG WILD-TYPE     83     80     98
D990V4, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPG MUTATED        0      1      4
  ASPG WILD-TYPE     89    159    134
D990V5, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPG MUTATED        4      1      0
  ASPG WILD-TYPE    178    132     72
D990V6, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            4            178
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPG MUTATED        1      3      2      1
  ASPG WILD-TYPE    111     93     90    185
D990V7, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASPG MUTATED        1      1      4      0      0      0      1
  ASPG WILD-TYPE     59     49     45     40     63    125     98
D990V8, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPG MUTATED        3      2      0      2
  ASPG WILD-TYPE    127     76     68    194
D990V9, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ASPG MUTATED        1      3      0      0      1      0      0      1      1
  ASPG WILD-TYPE     39     59     28     80     68     48     43     27     73
D990V10, multiclass
        clus
vv       ASPG MUTATED ASPG WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPG MUTATED        1      0      0      1
  ASPG WILD-TYPE     32     31     27     18
D990V11, multiclass
[1] "Remove cluster labels:" "ASPG MUTATED"          
clus
  ASPG MUTATED ASPG WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676     TCGA-CM-6677 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPG MUTATED        2      0      0      0
  ASPG WILD-TYPE     52     10     24     22
D990V12, multiclass
[1] "Remove cluster labels:" "ASPG MUTATED"          
clus
  ASPG MUTATED ASPG WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676     TCGA-CM-6677 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" "ASPG WILD-TYPE" 

Clustering(991) Variable = CDK14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK14 MUTATED        1      2      2      1
  CDK14 WILD-TYPE     45     56     62     42
D991V1, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              56
  CLUS_3             2              62
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK14 MUTATED        2      3      1
  CDK14 WILD-TYPE     49     80     76
D991V2, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK14 MUTATED        6      7      3      1
  CDK14 WILD-TYPE    172    176     98     19
D991V3, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             7             176
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK14 MUTATED        4      3      4
  CDK14 WILD-TYPE     83     77     96
D991V4, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK14 MUTATED        1      5      7
  CDK14 WILD-TYPE     88    155    131
D991V5, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK14 MUTATED        9      3      1
  CDK14 WILD-TYPE    173    130     71
D991V6, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK14 MUTATED        2      8      2      5
  CDK14 WILD-TYPE    110     88     90    181
D991V7, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDK14 MUTATED        2      1      5      2      1      4      2
  CDK14 WILD-TYPE     58     49     44     38     62    121     97
D991V8, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             4             121
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK14 MUTATED        8      2      2      4
  CDK14 WILD-TYPE    122     76     66    192
D991V9, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDK14 MUTATED        5      2      2      0      4      0      0      0
  CDK14 WILD-TYPE     35     60     26     80     65     48     43     28
                 vv
clus              CLUS_9
  CDK14 MUTATED        3
  CDK14 WILD-TYPE     71
D991V10, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK14 MUTATED        0      2      0      2
  CDK14 WILD-TYPE     33     29     27     17
D991V11, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK14 MUTATED        3      1      0      0
  CDK14 WILD-TYPE     51      9     24     22
D991V12, multiclass
        clus
vv       CDK14 MUTATED CDK14 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(992) Variable = OR8A1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8A1 MUTATED        0      0      0      0
  OR8A1 WILD-TYPE     46     58     64     43
D992V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8A1 MUTATED        0      0      0
  OR8A1 WILD-TYPE     51     83     77
D992V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8A1 MUTATED        2      2      0      1
  OR8A1 WILD-TYPE    176    181    101     19
D992V3, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8A1 MUTATED        3      1      1
  OR8A1 WILD-TYPE     84     79     99
D992V4, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8A1 MUTATED        0      1      3
  OR8A1 WILD-TYPE     89    159    135
D992V5, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8A1 MUTATED        3      1      0
  OR8A1 WILD-TYPE    179    132     72
D992V6, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8A1 MUTATED        1      3      1      0
  OR8A1 WILD-TYPE    111     93     91    186
D992V7, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR8A1 MUTATED        0      0      1      3      1      0      0
  OR8A1 WILD-TYPE     60     50     48     37     62    125     99
D992V8, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8A1 MUTATED        3      1      1      0
  OR8A1 WILD-TYPE    127     77     67    196
D992V9, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR8A1 MUTATED        1      1      0      0      1      1      1      0
  OR8A1 WILD-TYPE     39     61     28     80     68     47     42     28
                 vv
clus              CLUS_9
  OR8A1 MUTATED        0
  OR8A1 WILD-TYPE     74
D992V10, multiclass
        clus
vv       OR8A1 MUTATED OR8A1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8A1 MUTATED        0      1      0      0
  OR8A1 WILD-TYPE     33     30     27     19
D992V11, multiclass
[1] "Remove cluster labels:" "OR8A1 MUTATED"         
clus
  OR8A1 MUTATED OR8A1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6536 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-G5-6641 
"OR8A1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8A1 MUTATED        1      0      0      0
  OR8A1 WILD-TYPE     53     10     24     22
D992V12, multiclass
[1] "Remove cluster labels:" "OR8A1 MUTATED"         
clus
  OR8A1 MUTATED OR8A1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6536 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" "OR8A1 WILD-TYPE" 
     TCGA-G5-6641 
"OR8A1 WILD-TYPE" 

Clustering(993) Variable = SPINT4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT4 MUTATED        0      0      0      0
  SPINT4 WILD-TYPE     46     58     64     43
D993V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPINT4 MUTATED        0      0      0
  SPINT4 WILD-TYPE     51     83     77
D993V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT4 MUTATED        3      1      0      0
  SPINT4 WILD-TYPE    175    182    101     20
D993V3, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPINT4 MUTATED        1      1      2
  SPINT4 WILD-TYPE     86     79     98
D993V4, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPINT4 MUTATED        0      3      1
  SPINT4 WILD-TYPE     89    157    137
D993V5, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPINT4 MUTATED        2      2      0
  SPINT4 WILD-TYPE    180    131     72
D993V6, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT4 MUTATED        1      2      1      0
  SPINT4 WILD-TYPE    111     94     91    186
D993V7, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPINT4 MUTATED        1      1      2      0      0      0      0
  SPINT4 WILD-TYPE     59     49     47     40     63    125     99
D993V8, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT4 MUTATED        2      1      1      0
  SPINT4 WILD-TYPE    128     77     67    196
D993V9, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPINT4 MUTATED        0      2      0      1      0      0      1      0
  SPINT4 WILD-TYPE     40     60     28     79     69     48     42     28
                  vv
clus               CLUS_9
  SPINT4 MUTATED        0
  SPINT4 WILD-TYPE     74
D993V10, multiclass
        clus
vv       SPINT4 MUTATED SPINT4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT4 MUTATED        1      0      0      0
  SPINT4 WILD-TYPE     32     31     27     19
D993V11, multiclass
[1] "Remove cluster labels:" "SPINT4 MUTATED"        
clus
  SPINT4 MUTATED SPINT4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-G5-6641 
"SPINT4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPINT4 MUTATED        1      0      0      0
  SPINT4 WILD-TYPE     53     10     24     22
D993V12, multiclass
[1] "Remove cluster labels:" "SPINT4 MUTATED"        
clus
  SPINT4 MUTATED SPINT4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" "SPINT4 WILD-TYPE" 
      TCGA-G5-6641 
"SPINT4 WILD-TYPE" 

Clustering(994) Variable = E2F5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        1      1      0      0
  E2F5 WILD-TYPE     45     57     64     43
D994V1, multiclass
[1] "Remove cluster labels:" "E2F5 MUTATED"          
clus
  E2F5 MUTATED E2F5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3696 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AY-4071 
"E2F5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F5 MUTATED        1      1      0
  E2F5 WILD-TYPE     50     82     77
D994V2, multiclass
[1] "Remove cluster labels:" "E2F5 MUTATED"          
clus
  E2F5 MUTATED E2F5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3696 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AY-4071 
"E2F5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        6      1      0      0
  E2F5 WILD-TYPE    172    182    101     20
D994V3, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F5 MUTATED        4      0      1
  E2F5 WILD-TYPE     83     80     99
D994V4, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F5 MUTATED        0      1      5
  E2F5 WILD-TYPE     89    159    133
D994V5, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F5 MUTATED        3      1      2
  E2F5 WILD-TYPE    179    132     70
D994V6, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        2      2      2      1
  E2F5 WILD-TYPE    110     94     90    185
D994V7, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  E2F5 MUTATED        2      1      1      0      1      1      1
  E2F5 WILD-TYPE     58     49     48     40     62    124     98
D994V8, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        2      2      1      2
  E2F5 WILD-TYPE    128     76     67    194
D994V9, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  E2F5 MUTATED        0      4      0      0      1      1      0      0      1
  E2F5 WILD-TYPE     40     58     28     80     68     47     43     28     73
D994V10, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        0      0      0      1
  E2F5 WILD-TYPE     33     31     27     18
D994V11, multiclass
[1] "Remove cluster labels:" "E2F5 MUTATED"          
clus
  E2F5 MUTATED E2F5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-G5-6641 
"E2F5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        1      0      0      0
  E2F5 WILD-TYPE     53     10     24     22
D994V12, multiclass
[1] "Remove cluster labels:" "E2F5 MUTATED"          
clus
  E2F5 MUTATED E2F5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-G5-6641 
"E2F5 WILD-TYPE" 

Clustering(995) Variable = STRADB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRADB MUTATED        0      0      0      1
  STRADB WILD-TYPE     46     58     64     42
D995V1, multiclass
[1] "Remove cluster labels:" "STRADB MUTATED"        
clus
  STRADB MUTATED STRADB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STRADB MUTATED        0      0      1
  STRADB WILD-TYPE     51     83     76
D995V2, multiclass
[1] "Remove cluster labels:" "STRADB MUTATED"        
clus
  STRADB MUTATED STRADB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRADB MUTATED        4      0      2      1
  STRADB WILD-TYPE    174    183     99     19
D995V3, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STRADB MUTATED        2      0      4
  STRADB WILD-TYPE     85     80     96
D995V4, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STRADB MUTATED        3      1      1
  STRADB WILD-TYPE     86    159    137
D995V5, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1              159
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STRADB MUTATED        1      2      2
  STRADB WILD-TYPE    181    131     70
D995V6, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRADB MUTATED        1      2      2      2
  STRADB WILD-TYPE    111     94     90    184
D995V7, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STRADB MUTATED        2      0      3      1      0      1      0
  STRADB WILD-TYPE     58     50     46     39     63    124     99
D995V8, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRADB MUTATED        3      1      0      3
  STRADB WILD-TYPE    127     77     68    193
D995V9, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STRADB MUTATED        2      0      0      2      2      0      0      0
  STRADB WILD-TYPE     38     62     28     78     67     48     43     28
                  vv
clus               CLUS_9
  STRADB MUTATED        1
  STRADB WILD-TYPE     73
D995V10, multiclass
        clus
vv       STRADB MUTATED STRADB WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRADB MUTATED        2      0      0      0
  STRADB WILD-TYPE     31     31     27     19
D995V11, multiclass
[1] "Remove cluster labels:" "STRADB MUTATED"        
clus
  STRADB MUTATED STRADB WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRADB MUTATED        2      0      0      0
  STRADB WILD-TYPE     52     10     24     22
D995V12, multiclass
[1] "Remove cluster labels:" "STRADB MUTATED"        
clus
  STRADB MUTATED STRADB WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" "STRADB WILD-TYPE" 

Clustering(996) Variable = RANBP17 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP17 MUTATED        0      1      0      2
  RANBP17 WILD-TYPE     46     57     64     41
D996V1, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RANBP17 MUTATED        1      1      1
  RANBP17 WILD-TYPE     50     82     76
D996V2, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP17 MUTATED       10      1      1      0
  RANBP17 WILD-TYPE    168    182    100     20
D996V3, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RANBP17 MUTATED        4      1      4
  RANBP17 WILD-TYPE     83     79     96
D996V4, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RANBP17 MUTATED        2      3      7
  RANBP17 WILD-TYPE     87    157    131
D996V5, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               3               157
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RANBP17 MUTATED        8      2      2
  RANBP17 WILD-TYPE    174    131     70
D996V6, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               2               131
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP17 MUTATED        2      4      3      3
  RANBP17 WILD-TYPE    110     92     89    183
D996V7, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               4                92
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RANBP17 MUTATED        1      0      4      3      2      0      2
  RANBP17 WILD-TYPE     59     50     45     37     61    125     97
D996V8, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               3                37
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP17 MUTATED        3      4      1      3
  RANBP17 WILD-TYPE    127     74     67    193
D996V9, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RANBP17 MUTATED        2      3      0      1      3      1      1      0
  RANBP17 WILD-TYPE     38     59     28     79     66     47     42     28
                   vv
clus                CLUS_9
  RANBP17 MUTATED        0
  RANBP17 WILD-TYPE     74
D996V10, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP17 MUTATED        0      1      1      3
  RANBP17 WILD-TYPE     33     30     26     16
D996V11, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP17 MUTATED        2      0      2      1
  RANBP17 WILD-TYPE     52     10     22     21
D996V12, multiclass
        clus
vv       RANBP17 MUTATED RANBP17 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(997) Variable = AHCTF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHCTF1 MUTATED        3      0      1      4
  AHCTF1 WILD-TYPE     43     58     63     39
D997V1, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHCTF1 MUTATED        4      1      3
  AHCTF1 WILD-TYPE     47     82     74
D997V2, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHCTF1 MUTATED       14      5      3      1
  AHCTF1 WILD-TYPE    164    178     98     19
D997V3, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHCTF1 MUTATED        5      1      9
  AHCTF1 WILD-TYPE     82     79     91
D997V4, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHCTF1 MUTATED        2      8      9
  AHCTF1 WILD-TYPE     87    152    129
D997V5, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              8              152
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AHCTF1 MUTATED        9      8      2
  AHCTF1 WILD-TYPE    173    125     70
D997V6, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              8              125
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHCTF1 MUTATED        3      8      5      7
  AHCTF1 WILD-TYPE    109     88     87    179
D997V7, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AHCTF1 MUTATED        2      5      4      2      3      1      6
  AHCTF1 WILD-TYPE     58     45     45     38     60    124     93
D997V8, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              5               45
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHCTF1 MUTATED        9      3      2      8
  AHCTF1 WILD-TYPE    121     75     66    188
D997V9, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AHCTF1 MUTATED        1      3      3      2      7      2      2      1
  AHCTF1 WILD-TYPE     39     59     25     78     62     46     41     27
                  vv
clus               CLUS_9
  AHCTF1 MUTATED        1
  AHCTF1 WILD-TYPE     73
D997V10, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHCTF1 MUTATED        1      2      0      5
  AHCTF1 WILD-TYPE     32     29     27     14
D997V11, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHCTF1 MUTATED        4      1      2      1
  AHCTF1 WILD-TYPE     50      9     22     21
D997V12, multiclass
        clus
vv       AHCTF1 MUTATED AHCTF1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(998) Variable = OR10J1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J1 MUTATED        2      0      0      2
  OR10J1 WILD-TYPE     44     58     64     41
D998V1, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J1 MUTATED        3      1      0
  OR10J1 WILD-TYPE     48     82     77
D998V2, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J1 MUTATED        8      3      2      0
  OR10J1 WILD-TYPE    170    180     99     20
D998V3, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J1 MUTATED        3      1      5
  OR10J1 WILD-TYPE     84     79     95
D998V4, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J1 MUTATED        1      3      5
  OR10J1 WILD-TYPE     88    157    133
D998V5, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J1 MUTATED        7      1      1
  OR10J1 WILD-TYPE    175    132     71
D998V6, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J1 MUTATED        1      5      3      4
  OR10J1 WILD-TYPE    111     91     89    182
D998V7, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR10J1 MUTATED        1      3      4      1      0      1      3
  OR10J1 WILD-TYPE     59     47     45     39     63    124     96
D998V8, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J1 MUTATED        6      2      1      3
  OR10J1 WILD-TYPE    124     76     67    193
D998V9, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR10J1 MUTATED        1      3      2      1      1      1      1      1
  OR10J1 WILD-TYPE     39     59     26     79     68     47     42     27
                  vv
clus               CLUS_9
  OR10J1 MUTATED        1
  OR10J1 WILD-TYPE     73
D998V10, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J1 MUTATED        0      1      1      3
  OR10J1 WILD-TYPE     33     30     26     16
D998V11, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J1 MUTATED        3      0      1      1
  OR10J1 WILD-TYPE     51     10     23     21
D998V12, multiclass
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(999) Variable = MATN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATN3 MUTATED        3      0      0      1
  MATN3 WILD-TYPE     43     58     64     42
D999V1, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MATN3 MUTATED        4      0      0
  MATN3 WILD-TYPE     47     83     77
D999V2, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATN3 MUTATED        6      0      0      0
  MATN3 WILD-TYPE    172    183    101     20
D999V3, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MATN3 MUTATED        1      0      1
  MATN3 WILD-TYPE     86     80     99
D999V4, multiclass
[1] "Remove cluster labels:" "MATN3 MUTATED"         
clus
  MATN3 MUTATED MATN3 WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649      TCGA-A6-6651 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654      TCGA-A6-6780 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AA-3502      TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3655 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AA-3660      TCGA-AA-3662      TCGA-AA-3663      TCGA-AA-3697 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AD-5900      TCGA-AD-6548 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-6888      TCGA-AD-6889      TCGA-AD-6890      TCGA-AD-6895 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-6899      TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2693      TCGA-AF-4110 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AG-3742      TCGA-AG-A01W      TCGA-AG-A01Y 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02N      TCGA-AG-A036 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004      TCGA-AY-5543 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386      TCGA-AZ-4315 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4681      TCGA-AZ-4682 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6622 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948      TCGA-CK-4950 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913      TCGA-CK-5914 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917      TCGA-CL-5918 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-5538 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929      TCGA-D5-6930 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000      TCGA-DC-5337 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28C 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DM-A28H 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G5-6641 
"MATN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MATN3 MUTATED        1      1      4
  MATN3 WILD-TYPE     88    159    134
D999V5, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MATN3 MUTATED        3      2      1
  MATN3 WILD-TYPE    179    131     71
D999V6, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATN3 MUTATED        0      1      1      4
  MATN3 WILD-TYPE    112     95     91    182
D999V7, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MATN3 MUTATED        0      0      2      0      0      0      4
  MATN3 WILD-TYPE     60     50     47     40     63    125     95
D999V8, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATN3 MUTATED        1      1      0      3
  MATN3 WILD-TYPE    129     77     68    193
D999V9, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MATN3 MUTATED        1      1      0      0      2      0      0      1
  MATN3 WILD-TYPE     39     61     28     80     67     48     43     27
                 vv
clus              CLUS_9
  MATN3 MUTATED        0
  MATN3 WILD-TYPE     74
D999V10, multiclass
        clus
vv       MATN3 MUTATED MATN3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATN3 MUTATED        1      0      0      0
  MATN3 WILD-TYPE     32     31     27     19
D999V11, multiclass
[1] "Remove cluster labels:" "MATN3 MUTATED"         
clus
  MATN3 MUTATED MATN3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G5-6641 
"MATN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MATN3 MUTATED        1      0      0      0
  MATN3 WILD-TYPE     53     10     24     22
D999V12, multiclass
[1] "Remove cluster labels:" "MATN3 MUTATED"         
clus
  MATN3 MUTATED MATN3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" "MATN3 WILD-TYPE" 
     TCGA-G5-6641 
"MATN3 WILD-TYPE" 

Clustering(1000) Variable = HNMT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNMT MUTATED        1      0      0      1
  HNMT WILD-TYPE     45     58     64     42
D1000V1, multiclass
[1] "Remove cluster labels:" "HNMT MUTATED"          
clus
  HNMT MUTATED HNMT WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AY-4071 
"HNMT WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HNMT MUTATED        0      2      0
  HNMT WILD-TYPE     51     81     77
D1000V2, multiclass
[1] "Remove cluster labels:" "HNMT MUTATED"          
clus
  HNMT MUTATED HNMT WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" "HNMT WILD-TYPE" 
    TCGA-AY-4071 
"HNMT WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNMT MUTATED        5      2      1      0
  HNMT WILD-TYPE    173    181    100     20
D1000V3, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HNMT MUTATED        3      0      3
  HNMT WILD-TYPE     84     80     97
D1000V4, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HNMT MUTATED        0      2      4
  HNMT WILD-TYPE     89    158    134
D1000V5, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HNMT MUTATED        4      2      0
  HNMT WILD-TYPE    178    131     72
D1000V6, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNMT MUTATED        0      2      4      2
  HNMT WILD-TYPE    112     94     88    184
D1000V7, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HNMT MUTATED        3      0      3      0      0      1      1
  HNMT WILD-TYPE     57     50     46     40     63    124     98
D1000V8, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNMT MUTATED        4      1      0      3
  HNMT WILD-TYPE    126     77     68    193
D1000V9, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HNMT MUTATED        0      1      1      3      2      0      0      1      0
  HNMT WILD-TYPE     40     61     27     77     67     48     43     27     74
D1000V10, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNMT MUTATED        1      0      0      2
  HNMT WILD-TYPE     32     31     27     17
D1000V11, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNMT MUTATED        2      0      1      0
  HNMT WILD-TYPE     52     10     23     22
D1000V12, multiclass
        clus
vv       HNMT MUTATED HNMT WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1001) Variable = PAGE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAGE2 MUTATED        2      0      0      1
  PAGE2 WILD-TYPE     44     58     64     42
D1001V1, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAGE2 MUTATED        1      1      1
  PAGE2 WILD-TYPE     50     82     76
D1001V2, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAGE2 MUTATED        4      2      1      0
  PAGE2 WILD-TYPE    174    181    100     20
D1001V3, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAGE2 MUTATED        2      1      3
  PAGE2 WILD-TYPE     85     79     97
D1001V4, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAGE2 MUTATED        2      2      3
  PAGE2 WILD-TYPE     87    158    135
D1001V5, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAGE2 MUTATED        5      2      0
  PAGE2 WILD-TYPE    177    131     72
D1001V6, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAGE2 MUTATED        2      2      3      2
  PAGE2 WILD-TYPE    110     94     89    184
D1001V7, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAGE2 MUTATED        2      2      1      1      0      2      1
  PAGE2 WILD-TYPE     58     48     48     39     63    123     98
D1001V8, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAGE2 MUTATED        4      1      1      3
  PAGE2 WILD-TYPE    126     77     67    193
D1001V9, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PAGE2 MUTATED        0      2      1      2      1      1      1      1
  PAGE2 WILD-TYPE     40     60     27     78     68     47     42     27
                 vv
clus              CLUS_9
  PAGE2 MUTATED        0
  PAGE2 WILD-TYPE     74
D1001V10, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAGE2 MUTATED        3      0      1      0
  PAGE2 WILD-TYPE     30     31     26     19
D1001V11, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAGE2 MUTATED        2      0      0      2
  PAGE2 WILD-TYPE     52     10     24     20
D1001V12, multiclass
        clus
vv       PAGE2 MUTATED PAGE2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1002) Variable = MYH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH3 MUTATED        5      0      0      3
  MYH3 WILD-TYPE     41     58     64     40
D1002V1, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH3 MUTATED        6      1      1
  MYH3 WILD-TYPE     45     82     76
D1002V2, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH3 MUTATED       23      7      4      3
  MYH3 WILD-TYPE    155    176     97     17
D1002V3, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1           23            155
  CLUS_2            7            176
  CLUS_3            4             97
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH3 MUTATED       11      4     14
  MYH3 WILD-TYPE     76     76     86
D1002V4, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1           11             76
  CLUS_2            4             76
  CLUS_3           14             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH3 MUTATED        2      9     18
  MYH3 WILD-TYPE     87    151    120
D1002V5, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            9            151
  CLUS_3           18            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYH3 MUTATED       16     10      3
  MYH3 WILD-TYPE    166    123     69
D1002V6, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1           16            166
  CLUS_2           10            123
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH3 MUTATED        6     14      8      9
  MYH3 WILD-TYPE    106     82     84    177
D1002V7, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            6            106
  CLUS_2           14             82
  CLUS_3            8             84
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH3 MUTATED        6      8      7      5      3      1      7
  MYH3 WILD-TYPE     54     42     42     35     60    124     92
D1002V8, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            8             42
  CLUS_3            7             42
  CLUS_4            5             35
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH3 MUTATED       18      6      3      9
  MYH3 WILD-TYPE    112     72     65    187
D1002V9, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1           18            112
  CLUS_2            6             72
  CLUS_3            3             65
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MYH3 MUTATED        6      4      4      4      6      3      6      2      1
  MYH3 WILD-TYPE     34     58     24     76     63     45     37     26     73
D1002V10, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            4             58
  CLUS_3            4             24
  CLUS_4            4             76
  CLUS_5            6             63
  CLUS_6            3             45
  CLUS_7            6             37
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH3 MUTATED        4      1      1      3
  MYH3 WILD-TYPE     29     30     26     16
D1002V11, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH3 MUTATED        5      0      3      1
  MYH3 WILD-TYPE     49     10     21     21
D1002V12, multiclass
        clus
vv       MYH3 MUTATED MYH3 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1003) Variable = OR6C1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C1 MUTATED        0      0      0      0
  OR6C1 WILD-TYPE     46     58     64     43
D1003V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6C1 MUTATED        0      0      0
  OR6C1 WILD-TYPE     51     83     77
D1003V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C1 MUTATED        4      3      1      0
  OR6C1 WILD-TYPE    174    180    100     20
D1003V3, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6C1 MUTATED        4      2      2
  OR6C1 WILD-TYPE     83     78     98
D1003V4, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6C1 MUTATED        1      2      4
  OR6C1 WILD-TYPE     88    158    134
D1003V5, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6C1 MUTATED        4      2      1
  OR6C1 WILD-TYPE    178    131     71
D1003V6, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C1 MUTATED        3      1      4      0
  OR6C1 WILD-TYPE    109     95     88    186
D1003V7, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             4              88
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR6C1 MUTATED        3      1      1      0      3      0      0
  OR6C1 WILD-TYPE     57     49     48     40     60    125     99
D1003V8, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C1 MUTATED        2      4      1      1
  OR6C1 WILD-TYPE    128     74     67    195
D1003V9, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR6C1 MUTATED        1      2      1      2      0      0      1      0
  OR6C1 WILD-TYPE     39     60     27     78     69     48     42     28
                 vv
clus              CLUS_9
  OR6C1 MUTATED        1
  OR6C1 WILD-TYPE     73
D1003V10, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C1 MUTATED        2      1      0      1
  OR6C1 WILD-TYPE     31     30     27     18
D1003V11, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6C1 MUTATED        4      0      0      0
  OR6C1 WILD-TYPE     50     10     24     22
D1003V12, multiclass
        clus
vv       OR6C1 MUTATED OR6C1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1004) Variable = GDE1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDE1 MUTATED        0      0      0      0
  GDE1 WILD-TYPE     46     58     64     43
D1004V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDE1 MUTATED        0      0      0
  GDE1 WILD-TYPE     51     83     77
D1004V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDE1 MUTATED        3      1      2      0
  GDE1 WILD-TYPE    175    182     99     20
D1004V3, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDE1 MUTATED        3      2      1
  GDE1 WILD-TYPE     84     78     99
D1004V4, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDE1 MUTATED        1      0      4
  GDE1 WILD-TYPE     88    160    134
D1004V5, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            0            160
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDE1 MUTATED        4      1      0
  GDE1 WILD-TYPE    178    132     72
D1004V6, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDE1 MUTATED        1      2      3      0
  GDE1 WILD-TYPE    111     94     89    186
D1004V7, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GDE1 MUTATED        1      1      0      1      3      0      0
  GDE1 WILD-TYPE     59     49     49     39     60    125     99
D1004V8, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDE1 MUTATED        1      4      0      1
  GDE1 WILD-TYPE    129     74     68    195
D1004V9, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GDE1 MUTATED        1      4      0      0      0      0      0      0      1
  GDE1 WILD-TYPE     39     58     28     80     69     48     43     28     73
D1004V10, multiclass
        clus
vv       GDE1 MUTATED GDE1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDE1 MUTATED        0      1      0      0
  GDE1 WILD-TYPE     33     30     27     19
D1004V11, multiclass
[1] "Remove cluster labels:" "GDE1 MUTATED"          
clus
  GDE1 MUTATED GDE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-G5-6641 
"GDE1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDE1 MUTATED        1      0      0      0
  GDE1 WILD-TYPE     53     10     24     22
D1004V12, multiclass
[1] "Remove cluster labels:" "GDE1 MUTATED"          
clus
  GDE1 MUTATED GDE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" "GDE1 WILD-TYPE" 
    TCGA-G5-6641 
"GDE1 WILD-TYPE" 

Clustering(1005) Variable = GRINA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        0      0      0      0
  GRINA WILD-TYPE     46     58     64     43
D1005V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRINA MUTATED        0      0      0
  GRINA WILD-TYPE     51     83     77
D1005V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        2      2      0      0
  GRINA WILD-TYPE    176    181    101     20
D1005V3, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRINA MUTATED        1      2      1
  GRINA WILD-TYPE     86     78     99
D1005V4, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRINA MUTATED        1      2      1
  GRINA WILD-TYPE     88    158    137
D1005V5, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRINA MUTATED        0      2      2
  GRINA WILD-TYPE    182    131     70
D1005V6, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             0             182
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        1      2      0      1
  GRINA WILD-TYPE    111     94     92    185
D1005V7, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRINA MUTATED        0      1      2      0      0      1      0
  GRINA WILD-TYPE     60     49     47     40     63    124     99
D1005V8, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        2      0      1      1
  GRINA WILD-TYPE    128     78     67    195
D1005V9, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GRINA MUTATED        1      0      0      0      1      0      1      0
  GRINA WILD-TYPE     39     62     28     80     68     48     42     28
                 vv
clus              CLUS_9
  GRINA MUTATED        1
  GRINA WILD-TYPE     73
D1005V10, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        0      0      0      1
  GRINA WILD-TYPE     33     31     27     18
D1005V11, multiclass
[1] "Remove cluster labels:" "GRINA MUTATED"         
clus
  GRINA MUTATED GRINA WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-G5-6641 
"GRINA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        0      0      1      0
  GRINA WILD-TYPE     54     10     23     22
D1005V12, multiclass
[1] "Remove cluster labels:" "GRINA MUTATED"         
clus
  GRINA MUTATED GRINA WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" "GRINA WILD-TYPE" 
     TCGA-G5-6641 
"GRINA WILD-TYPE" 

Clustering(1006) Variable = FRMD4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4B MUTATED        0      0      0      1
  FRMD4B WILD-TYPE     46     58     64     42
D1006V1, multiclass
[1] "Remove cluster labels:" "FRMD4B MUTATED"        
clus
  FRMD4B MUTATED FRMD4B WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4B MUTATED        0      0      1
  FRMD4B WILD-TYPE     51     83     76
D1006V2, multiclass
[1] "Remove cluster labels:" "FRMD4B MUTATED"        
clus
  FRMD4B MUTATED FRMD4B WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4B MUTATED        6      2      0      0
  FRMD4B WILD-TYPE    172    181    101     20
D1006V3, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4B MUTATED        3      1      2
  FRMD4B WILD-TYPE     84     79     98
D1006V4, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4B MUTATED        1      4      3
  FRMD4B WILD-TYPE     88    156    135
D1006V5, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4B MUTATED        4      4      0
  FRMD4B WILD-TYPE    178    129     72
D1006V6, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4B MUTATED        0      4      2      2
  FRMD4B WILD-TYPE    112     92     90    184
D1006V7, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FRMD4B MUTATED        1      2      1      1      2      1      0
  FRMD4B WILD-TYPE     59     48     48     39     61    124     99
D1006V8, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4B MUTATED        4      2      1      1
  FRMD4B WILD-TYPE    126     76     67    195
D1006V9, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FRMD4B MUTATED        1      2      1      1      1      1      0      0
  FRMD4B WILD-TYPE     39     60     27     79     68     47     43     28
                  vv
clus               CLUS_9
  FRMD4B MUTATED        1
  FRMD4B WILD-TYPE     73
D1006V10, multiclass
        clus
vv       FRMD4B MUTATED FRMD4B WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4B MUTATED        1      0      1      0
  FRMD4B WILD-TYPE     32     31     26     19
D1006V11, multiclass
[1] "Remove cluster labels:" "FRMD4B MUTATED"        
clus
  FRMD4B MUTATED FRMD4B WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6680 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4B MUTATED        1      0      1      0
  FRMD4B WILD-TYPE     53     10     23     22
D1006V12, multiclass
[1] "Remove cluster labels:" "FRMD4B MUTATED"        
clus
  FRMD4B MUTATED FRMD4B WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6680 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" "FRMD4B WILD-TYPE" 

Clustering(1007) Variable = ARHGAP11A MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP11A MUTATED        2      0      0      2
  ARHGAP11A WILD-TYPE     44     58     64     41
D1007V1, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 2                  44
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 2                  41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  ARHGAP11A MUTATED        1      1      2
  ARHGAP11A WILD-TYPE     50     82     75
D1007V2, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 1                  50
  CLUS_2                 1                  82
  CLUS_3                 2                  75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP11A MUTATED       11      1      3      1
  ARHGAP11A WILD-TYPE    167    182     98     19
D1007V3, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                11                 167
  CLUS_2                 1                 182
  CLUS_3                 3                  98
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  ARHGAP11A MUTATED        6      2      3
  ARHGAP11A WILD-TYPE     81     78     97
D1007V4, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 6                  81
  CLUS_2                 2                  78
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  ARHGAP11A MUTATED        1      5      5
  ARHGAP11A WILD-TYPE     88    155    133
D1007V5, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 1                  88
  CLUS_2                 5                 155
  CLUS_3                 5                 133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  ARHGAP11A MUTATED        4      6      1
  ARHGAP11A WILD-TYPE    178    127     71
D1007V6, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 4                 178
  CLUS_2                 6                 127
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP11A MUTATED        3      3      6      4
  ARHGAP11A WILD-TYPE    109     93     86    182
D1007V7, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 3                 109
  CLUS_2                 3                  93
  CLUS_3                 6                  86
  CLUS_4                 4                 182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP11A MUTATED        2      2      5      0      4      1      2
  ARHGAP11A WILD-TYPE     58     48     44     40     59    124     97
D1007V8, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 2                  58
  CLUS_2                 2                  48
  CLUS_3                 5                  44
  CLUS_4                 0                  40
  CLUS_5                 4                  59
  CLUS_6                 1                 124
  CLUS_7                 2                  97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP11A MUTATED        5      6      0      5
  ARHGAP11A WILD-TYPE    125     72     68    191
D1007V9, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 5                 125
  CLUS_2                 6                  72
  CLUS_3                 0                  68
  CLUS_4                 5                 191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP11A MUTATED        0      4      1      6      3      2      0      0
  ARHGAP11A WILD-TYPE     40     58     27     74     66     46     43     28
                     vv
clus                  CLUS_9
  ARHGAP11A MUTATED        0
  ARHGAP11A WILD-TYPE     74
D1007V10, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 4                  58
  CLUS_3                 1                  27
  CLUS_4                 6                  74
  CLUS_5                 3                  66
  CLUS_6                 2                  46
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP11A MUTATED        2      0      0      2
  ARHGAP11A WILD-TYPE     31     31     27     17
D1007V11, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 2                  31
  CLUS_2                 0                  31
  CLUS_3                 0                  27
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP11A MUTATED        3      0      1      0
  ARHGAP11A WILD-TYPE     51     10     23     22
D1007V12, multiclass
        clus
vv       ARHGAP11A MUTATED ARHGAP11A WILD-TYPE
  CLUS_1                 3                  51
  CLUS_2                 0                  10
  CLUS_3                 1                  23
  CLUS_4                 0                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1008) Variable = CHRM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM2 MUTATED        3      0      2      3
  CHRM2 WILD-TYPE     43     58     62     40
D1008V1, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM2 MUTATED        4      2      2
  CHRM2 WILD-TYPE     47     81     75
D1008V2, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM2 MUTATED       20      4      1      1
  CHRM2 WILD-TYPE    158    179    100     19
D1008V3, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1            20             158
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM2 MUTATED        8      1      7
  CHRM2 WILD-TYPE     79     79     93
D1008V4, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM2 MUTATED        6     12      6
  CHRM2 WILD-TYPE     83    148    132
D1008V5, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             6              83
  CLUS_2            12             148
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHRM2 MUTATED        7      8      9
  CHRM2 WILD-TYPE    175    125     63
D1008V6, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             8             125
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM2 MUTATED        1     10      5      9
  CHRM2 WILD-TYPE    111     86     87    177
D1008V7, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2            10              86
  CLUS_3             5              87
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHRM2 MUTATED        3      4      3      3      3      3      6
  CHRM2 WILD-TYPE     57     46     46     37     60    122     93
D1008V8, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             3             122
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM2 MUTATED       10      3      0     12
  CHRM2 WILD-TYPE    120     75     68    184
D1008V9, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHRM2 MUTATED        3      1      4      2      8      4      0      1
  CHRM2 WILD-TYPE     37     61     24     78     61     44     43     27
                 vv
clus              CLUS_9
  CHRM2 MUTATED        2
  CHRM2 WILD-TYPE     72
D1008V10, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             4              24
  CLUS_4             2              78
  CLUS_5             8              61
  CLUS_6             4              44
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM2 MUTATED        1      1      1      2
  CHRM2 WILD-TYPE     32     30     26     17
D1008V11, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRM2 MUTATED        2      0      3      0
  CHRM2 WILD-TYPE     52     10     21     22
D1008V12, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1009) Variable = CEP290 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        7      1      0      4
  CEP290 WILD-TYPE     39     57     64     39
D1009V1, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP290 MUTATED        8      3      1
  CEP290 WILD-TYPE     43     80     76
D1009V2, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              8               43
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED       21      4      2      2
  CEP290 WILD-TYPE    157    179     99     18
D1009V3, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1             21              157
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP290 MUTATED        7      2     10
  CEP290 WILD-TYPE     80     78     90
D1009V4, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP290 MUTATED        5      6     13
  CEP290 WILD-TYPE     84    154    125
D1009V5, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              6              154
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP290 MUTATED       10      8      6
  CEP290 WILD-TYPE    172    125     66
D1009V6, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              8              125
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        3     11      5     12
  CEP290 WILD-TYPE    109     85     87    174
D1009V7, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3              109
  CLUS_2             11               85
  CLUS_3              5               87
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEP290 MUTATED        3      7      5      3      2      3      8
  CEP290 WILD-TYPE     57     43     44     37     61    122     91
D1009V8, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              7               43
  CLUS_3              5               44
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED       11      4      3     12
  CEP290 WILD-TYPE    119     74     65    184
D1009V9, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1             11              119
  CLUS_2              4               74
  CLUS_3              3               65
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEP290 MUTATED        3      2      3      6     10      0      2      2
  CEP290 WILD-TYPE     37     60     25     74     59     48     41     26
                  vv
clus               CLUS_9
  CEP290 MUTATED        2
  CEP290 WILD-TYPE     72
D1009V10, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              3               25
  CLUS_4              6               74
  CLUS_5             10               59
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              2               26
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        2      1      3      1
  CEP290 WILD-TYPE     31     30     24     18
D1009V11, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              3               24
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        3      0      1      3
  CEP290 WILD-TYPE     51     10     23     19
D1009V12, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1010) Variable = MYBPH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYBPH MUTATED        2      1      1      0
  MYBPH WILD-TYPE     44     57     63     43
D1010V1, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYBPH MUTATED        2      2      0
  MYBPH WILD-TYPE     49     81     77
D1010V2, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYBPH MUTATED        3      3      0      1
  MYBPH WILD-TYPE    175    180    101     19
D1010V3, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYBPH MUTATED        0      0      3
  MYBPH WILD-TYPE     87     80     97
D1010V4, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYBPH MUTATED        1      4      1
  MYBPH WILD-TYPE     88    156    137
D1010V5, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYBPH MUTATED        1      2      3
  MYBPH WILD-TYPE    181    131     69
D1010V6, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYBPH MUTATED        0      3      0      4
  MYBPH WILD-TYPE    112     93     92    182
D1010V7, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYBPH MUTATED        0      0      2      0      0      2      3
  MYBPH WILD-TYPE     60     50     47     40     63    123     96
D1010V8, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYBPH MUTATED        2      0      0      5
  MYBPH WILD-TYPE    128     78     68    191
D1010V9, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYBPH MUTATED        0      0      0      0      4      0      1      1
  MYBPH WILD-TYPE     40     62     28     80     65     48     42     27
                 vv
clus              CLUS_9
  MYBPH MUTATED        1
  MYBPH WILD-TYPE     73
D1010V10, multiclass
        clus
vv       MYBPH MUTATED MYBPH WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYBPH MUTATED        0      0      0      1
  MYBPH WILD-TYPE     33     31     27     18
D1010V11, multiclass
[1] "Remove cluster labels:" "MYBPH MUTATED"         
clus
  MYBPH MUTATED MYBPH WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-G5-6641 
"MYBPH WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYBPH MUTATED        0      0      1      0
  MYBPH WILD-TYPE     54     10     23     22
D1010V12, multiclass
[1] "Remove cluster labels:" "MYBPH MUTATED"         
clus
  MYBPH MUTATED MYBPH WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" "MYBPH WILD-TYPE" 
     TCGA-G5-6641 
"MYBPH WILD-TYPE" 

Clustering(1011) Variable = A2M MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A2M MUTATED        6      1      0      2
  A2M WILD-TYPE     40     57     64     41
D1011V1, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           6            40
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  A2M MUTATED        6      2      1
  A2M WILD-TYPE     45     81     76
D1011V2, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           6            45
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A2M MUTATED       18      4      6      0
  A2M WILD-TYPE    160    179     95     20
D1011V3, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1          18           160
  CLUS_2           4           179
  CLUS_3           6            95
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  A2M MUTATED        9      3      7
  A2M WILD-TYPE     78     77     93
D1011V4, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           9            78
  CLUS_2           3            77
  CLUS_3           7            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  A2M MUTATED        4      3     15
  A2M WILD-TYPE     85    157    123
D1011V5, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           4            85
  CLUS_2           3           157
  CLUS_3          15           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  A2M MUTATED       15      5      2
  A2M WILD-TYPE    167    128     70
D1011V6, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1          15           167
  CLUS_2           5           128
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A2M MUTATED        4      7      9      8
  A2M WILD-TYPE    108     89     83    178
D1011V7, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           4           108
  CLUS_2           7            89
  CLUS_3           9            83
  CLUS_4           8           178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  A2M MUTATED        3      4      7      3      2      2      7
  A2M WILD-TYPE     57     46     42     37     61    123     92
D1011V8, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           3            57
  CLUS_2           4            46
  CLUS_3           7            42
  CLUS_4           3            37
  CLUS_5           2            61
  CLUS_6           2           123
  CLUS_7           7            92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A2M MUTATED        5      5      5     12
  A2M WILD-TYPE    125     73     63    184
D1011V9, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           5           125
  CLUS_2           5            73
  CLUS_3           5            63
  CLUS_4          12           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  A2M MUTATED        2      7      1      4      5      0      3      4      1
  A2M WILD-TYPE     38     55     27     76     64     48     40     24     73
D1011V10, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           2            38
  CLUS_2           7            55
  CLUS_3           1            27
  CLUS_4           4            76
  CLUS_5           5            64
  CLUS_6           0            48
  CLUS_7           3            40
  CLUS_8           4            24
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A2M MUTATED        5      0      4      2
  A2M WILD-TYPE     28     31     23     17
D1011V11, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           5            28
  CLUS_2           0            31
  CLUS_3           4            23
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A2M MUTATED        6      1      3      1
  A2M WILD-TYPE     48      9     21     21
D1011V12, multiclass
        clus
vv       A2M MUTATED A2M WILD-TYPE
  CLUS_1           6            48
  CLUS_2           1             9
  CLUS_3           3            21
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1012) Variable = ADM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADM MUTATED        2      0      0      0
  ADM WILD-TYPE     44     58     64     43
D1012V1, multiclass
[1] "Remove cluster labels:" "ADM MUTATED"           
clus
  ADM MUTATED ADM WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADM MUTATED        2      0      0
  ADM WILD-TYPE     49     83     77
D1012V2, multiclass
[1] "Remove cluster labels:" "ADM MUTATED"           
clus
  ADM MUTATED ADM WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" "ADM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADM MUTATED        6      0      0      0
  ADM WILD-TYPE    172    183    101     20
D1012V3, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           6           172
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADM MUTATED        2      0      2
  ADM WILD-TYPE     85     80     98
D1012V4, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           2            85
  CLUS_2           0            80
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADM MUTATED        1      1      3
  ADM WILD-TYPE     88    159    135
D1012V5, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           1            88
  CLUS_2           1           159
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADM MUTATED        3      2      0
  ADM WILD-TYPE    179    131     72
D1012V6, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           3           179
  CLUS_2           2           131
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADM MUTATED        0      3      0      3
  ADM WILD-TYPE    112     93     92    183
D1012V7, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           0           112
  CLUS_2           3            93
  CLUS_3           0            92
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADM MUTATED        0      0      3      0      0      0      3
  ADM WILD-TYPE     60     50     46     40     63    125     96
D1012V8, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           0            60
  CLUS_2           0            50
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADM MUTATED        2      0      0      4
  ADM WILD-TYPE    128     78     68    192
D1012V9, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           2           128
  CLUS_2           0            78
  CLUS_3           0            68
  CLUS_4           4           192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ADM MUTATED        0      0      0      0      5      0      0      0      1
  ADM WILD-TYPE     40     62     28     80     64     48     43     28     73
D1012V10, multiclass
        clus
vv       ADM MUTATED ADM WILD-TYPE
  CLUS_1           0            40
  CLUS_2           0            62
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           5            64
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADM MUTATED        0      0      0      0
  ADM WILD-TYPE     33     31     27     19
D1012V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADM MUTATED        0      0      0      0
  ADM WILD-TYPE     54     10     24     22
D1012V12, multiclass

Clustering(1013) Variable = COL3A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL3A1 MUTATED        7      0      1      3
  COL3A1 WILD-TYPE     39     58     63     40
D1013V1, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL3A1 MUTATED        8      1      2
  COL3A1 WILD-TYPE     43     82     75
D1013V2, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              8               43
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL3A1 MUTATED       21      9      2      0
  COL3A1 WILD-TYPE    157    174     99     20
D1013V3, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1             21              157
  CLUS_2              9              174
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL3A1 MUTATED        9      5      6
  COL3A1 WILD-TYPE     78     75     94
D1013V4, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              5               75
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL3A1 MUTATED        4      9     13
  COL3A1 WILD-TYPE     85    151    125
D1013V5, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              9              151
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL3A1 MUTATED       14      7      5
  COL3A1 WILD-TYPE    168    126     67
D1013V6, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1             14              168
  CLUS_2              7              126
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL3A1 MUTATED        7      8      4     13
  COL3A1 WILD-TYPE    105     88     88    173
D1013V7, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              7              105
  CLUS_2              8               88
  CLUS_3              4               88
  CLUS_4             13              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL3A1 MUTATED        3      3      3      9      2      2     10
  COL3A1 WILD-TYPE     57     47     46     31     61    123     89
D1013V8, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              9               31
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL3A1 MUTATED       14      1      4     11
  COL3A1 WILD-TYPE    116     77     64    185
D1013V9, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1             14              116
  CLUS_2              1               77
  CLUS_3              4               64
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COL3A1 MUTATED        4      2      2      4      9      4      3      0
  COL3A1 WILD-TYPE     36     60     26     76     60     44     40     28
                  vv
clus               CLUS_9
  COL3A1 MUTATED        2
  COL3A1 WILD-TYPE     72
D1013V10, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              4               76
  CLUS_5              9               60
  CLUS_6              4               44
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL3A1 MUTATED        1      1      3      1
  COL3A1 WILD-TYPE     32     30     24     18
D1013V11, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              3               24
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL3A1 MUTATED        3      0      2      1
  COL3A1 WILD-TYPE     51     10     22     21
D1013V12, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1014) Variable = CCAR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        2      0      1      2
  CCAR1 WILD-TYPE     44     58     63     41
D1014V1, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCAR1 MUTATED        2      1      2
  CCAR1 WILD-TYPE     49     82     75
D1014V2, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED       14      3      3      0
  CCAR1 WILD-TYPE    164    180     98     20
D1014V3, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCAR1 MUTATED        7      1      7
  CCAR1 WILD-TYPE     80     79     93
D1014V4, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCAR1 MUTATED        1      8      7
  CCAR1 WILD-TYPE     88    152    131
D1014V5, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCAR1 MUTATED        7      9      0
  CCAR1 WILD-TYPE    175    124     72
D1014V6, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             9             124
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        2      8      5      5
  CCAR1 WILD-TYPE    110     88     87    181
D1014V7, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCAR1 MUTATED        2      6      4      0      2      2      4
  CCAR1 WILD-TYPE     58     44     45     40     61    123     95
D1014V8, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             6              44
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        7      3      2      8
  CCAR1 WILD-TYPE    123     75     66    188
D1014V9, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCAR1 MUTATED        1      3      1      2      5      1      4      0
  CCAR1 WILD-TYPE     39     59     27     78     64     47     39     28
                 vv
clus              CLUS_9
  CCAR1 MUTATED        3
  CCAR1 WILD-TYPE     71
D1014V10, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        2      2      0      2
  CCAR1 WILD-TYPE     31     29     27     17
D1014V11, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        4      1      1      0
  CCAR1 WILD-TYPE     50      9     23     22
D1014V12, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1015) Variable = ZNF182 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF182 MUTATED        2      0      0      4
  ZNF182 WILD-TYPE     44     58     64     39
D1015V1, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF182 MUTATED        2      2      2
  ZNF182 WILD-TYPE     49     81     75
D1015V2, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF182 MUTATED       12      1      3      0
  ZNF182 WILD-TYPE    166    182     98     20
D1015V3, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF182 MUTATED        4      1      5
  ZNF182 WILD-TYPE     83     79     95
D1015V4, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF182 MUTATED        1      5      6
  ZNF182 WILD-TYPE     88    155    132
D1015V5, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF182 MUTATED        7      2      3
  ZNF182 WILD-TYPE    175    131     69
D1015V6, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              2              131
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF182 MUTATED        1      5      4      6
  ZNF182 WILD-TYPE    111     91     88    180
D1015V7, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF182 MUTATED        1      2      3      0      5      1      4
  ZNF182 WILD-TYPE     59     48     46     40     58    124     95
D1015V8, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              5               58
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF182 MUTATED        7      3      0      6
  ZNF182 WILD-TYPE    123     75     68    190
D1015V9, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF182 MUTATED        1      2      3      3      6      0      1      0
  ZNF182 WILD-TYPE     39     60     25     77     63     48     42     28
                  vv
clus               CLUS_9
  ZNF182 MUTATED        0
  ZNF182 WILD-TYPE     74
D1015V10, multiclass
        clus
vv       ZNF182 MUTATED ZNF182 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF182 MUTATED        0      2      0      0
  ZNF182 WILD-TYPE     33     29     27     19
D1015V11, multiclass
[1] "Remove cluster labels:" "ZNF182 MUTATED"        
clus
  ZNF182 MUTATED ZNF182 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6653       TCGA-A6-6654 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6306       TCGA-G4-6309 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF182 MUTATED        1      1      0      0
  ZNF182 WILD-TYPE     53      9     24     22
D1015V12, multiclass
[1] "Remove cluster labels:" "ZNF182 MUTATED"        
clus
  ZNF182 MUTATED ZNF182 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6653       TCGA-A6-6654 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6306       TCGA-G4-6309 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" "ZNF182 WILD-TYPE" 

Clustering(1016) Variable = CXXC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC5 MUTATED        0      0      1      0
  CXXC5 WILD-TYPE     46     58     63     43
D1016V1, multiclass
[1] "Remove cluster labels:" "CXXC5 MUTATED"         
clus
  CXXC5 MUTATED CXXC5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3679 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC5 MUTATED        0      0      1
  CXXC5 WILD-TYPE     51     83     76
D1016V2, multiclass
[1] "Remove cluster labels:" "CXXC5 MUTATED"         
clus
  CXXC5 MUTATED CXXC5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3679 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC5 MUTATED        4      1      0      1
  CXXC5 WILD-TYPE    174    182    101     19
D1016V3, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC5 MUTATED        1      0      4
  CXXC5 WILD-TYPE     86     80     96
D1016V4, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC5 MUTATED        0      3      2
  CXXC5 WILD-TYPE     89    157    136
D1016V5, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC5 MUTATED        2      3      0
  CXXC5 WILD-TYPE    180    130     72
D1016V6, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC5 MUTATED        0      2      3      1
  CXXC5 WILD-TYPE    112     94     89    185
D1016V7, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CXXC5 MUTATED        0      1      3      0      1      0      1
  CXXC5 WILD-TYPE     60     49     46     40     62    125     98
D1016V8, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC5 MUTATED        1      2      0      3
  CXXC5 WILD-TYPE    129     76     68    193
D1016V9, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CXXC5 MUTATED        0      3      0      1      1      0      0      0
  CXXC5 WILD-TYPE     40     59     28     79     68     48     43     28
                 vv
clus              CLUS_9
  CXXC5 MUTATED        1
  CXXC5 WILD-TYPE     73
D1016V10, multiclass
        clus
vv       CXXC5 MUTATED CXXC5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC5 MUTATED        1      0      0      0
  CXXC5 WILD-TYPE     32     31     27     19
D1016V11, multiclass
[1] "Remove cluster labels:" "CXXC5 MUTATED"         
clus
  CXXC5 MUTATED CXXC5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-G5-6641 
"CXXC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC5 MUTATED        1      0      0      0
  CXXC5 WILD-TYPE     53     10     24     22
D1016V12, multiclass
[1] "Remove cluster labels:" "CXXC5 MUTATED"         
clus
  CXXC5 MUTATED CXXC5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" "CXXC5 WILD-TYPE" 
     TCGA-G5-6641 
"CXXC5 WILD-TYPE" 

Clustering(1017) Variable = SPAG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG1 MUTATED        1      1      1      3
  SPAG1 WILD-TYPE     45     57     63     40
D1017V1, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG1 MUTATED        1      3      2
  SPAG1 WILD-TYPE     50     80     75
D1017V2, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG1 MUTATED        8      3      1      0
  SPAG1 WILD-TYPE    170    180    100     20
D1017V3, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG1 MUTATED        5      0      1
  SPAG1 WILD-TYPE     82     80     99
D1017V4, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG1 MUTATED        2      4      3
  SPAG1 WILD-TYPE     87    156    135
D1017V5, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG1 MUTATED        2      4      3
  SPAG1 WILD-TYPE    180    129     69
D1017V6, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG1 MUTATED        1      2      3      6
  SPAG1 WILD-TYPE    111     94     89    180
D1017V7, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPAG1 MUTATED        2      1      1      2      1      2      3
  SPAG1 WILD-TYPE     58     49     48     38     62    123     96
D1017V8, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG1 MUTATED        3      3      1      5
  SPAG1 WILD-TYPE    127     75     67    191
D1017V9, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPAG1 MUTATED        2      1      2      3      2      0      0      0
  SPAG1 WILD-TYPE     38     61     26     77     67     48     43     28
                 vv
clus              CLUS_9
  SPAG1 MUTATED        2
  SPAG1 WILD-TYPE     72
D1017V10, multiclass
        clus
vv       SPAG1 MUTATED SPAG1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG1 MUTATED        1      1      0      0
  SPAG1 WILD-TYPE     32     30     27     19
D1017V11, multiclass
[1] "Remove cluster labels:" "SPAG1 MUTATED"         
clus
  SPAG1 MUTATED SPAG1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3732 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG1 MUTATED        1      0      0      1
  SPAG1 WILD-TYPE     53     10     24     21
D1017V12, multiclass
[1] "Remove cluster labels:" "SPAG1 MUTATED"         
clus
  SPAG1 MUTATED SPAG1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3732 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" "SPAG1 WILD-TYPE" 

Clustering(1018) Variable = KIAA0649 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        1      0      0      1
  KIAA0649 WILD-TYPE     45     58     64     42
D1018V1, multiclass
[1] "Remove cluster labels:" "KIAA0649 MUTATED"      
clus
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3819 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3821         TCGA-AA-3831         TCGA-AA-3833 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3846         TCGA-AA-3848 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3851         TCGA-AA-3852 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3854         TCGA-AA-3855         TCGA-AA-3856 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3858         TCGA-AA-3860         TCGA-AA-3861 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3867 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3870         TCGA-AA-3872 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3875         TCGA-AA-3877         TCGA-AA-3930 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3950         TCGA-AA-3952 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3956         TCGA-AA-3966 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3976 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3977         TCGA-AA-3979         TCGA-AA-3980 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0649 MUTATED        1      0      1
  KIAA0649 WILD-TYPE     50     83     76
D1018V2, multiclass
[1] "Remove cluster labels:" "KIAA0649 MUTATED"      
clus
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3819 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3821         TCGA-AA-3831         TCGA-AA-3833 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3846         TCGA-AA-3848 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3851         TCGA-AA-3852 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3854         TCGA-AA-3855         TCGA-AA-3856 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3858         TCGA-AA-3860         TCGA-AA-3861 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3867 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3870         TCGA-AA-3872 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3875         TCGA-AA-3877         TCGA-AA-3930 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3950         TCGA-AA-3952 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3956         TCGA-AA-3966 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3976 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3977         TCGA-AA-3979         TCGA-AA-3980 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        9      0      1      0
  KIAA0649 WILD-TYPE    169    183    100     20
D1018V3, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0649 MUTATED        1      0      7
  KIAA0649 WILD-TYPE     86     80     93
D1018V4, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                0                 80
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0649 MUTATED        4      1      3
  KIAA0649 WILD-TYPE     85    159    135
D1018V5, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2                1                159
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0649 MUTATED        4      2      2
  KIAA0649 WILD-TYPE    178    131     70
D1018V6, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                2                131
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        0      5      3      2
  KIAA0649 WILD-TYPE    112     91     89    184
D1018V7, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                5                 91
  CLUS_3                3                 89
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0649 MUTATED        0      0      7      0      1      0      2
  KIAA0649 WILD-TYPE     60     50     42     40     62    125     97
D1018V8, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                7                 42
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        6      1      0      3
  KIAA0649 WILD-TYPE    124     77     68    193
D1018V9, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0649 MUTATED        1      1      0      1      5      0      0      2
  KIAA0649 WILD-TYPE     39     61     28     79     64     48     43     26
                    vv
clus                 CLUS_9
  KIAA0649 MUTATED        0
  KIAA0649 WILD-TYPE     74
D1018V10, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                2                 26
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        0      0      0      2
  KIAA0649 WILD-TYPE     33     31     27     17
D1018V11, multiclass
[1] "Remove cluster labels:" "KIAA0649 MUTATED"      
clus
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-6548         TCGA-AD-6889 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6704 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        2      0      0      0
  KIAA0649 WILD-TYPE     52     10     24     22
D1018V12, multiclass
[1] "Remove cluster labels:" "KIAA0649 MUTATED"      
clus
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-6548         TCGA-AD-6889 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6704 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" "KIAA0649 WILD-TYPE" 

Clustering(1019) Variable = SPZ1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPZ1 MUTATED        2      0      0      2
  SPZ1 WILD-TYPE     44     58     64     41
D1019V1, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPZ1 MUTATED        1      1      2
  SPZ1 WILD-TYPE     50     82     75
D1019V2, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPZ1 MUTATED       10      1      0      0
  SPZ1 WILD-TYPE    168    182    101     20
D1019V3, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPZ1 MUTATED        3      0      4
  SPZ1 WILD-TYPE     84     80     96
D1019V4, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPZ1 MUTATED        0      2      4
  SPZ1 WILD-TYPE     89    158    134
D1019V5, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPZ1 MUTATED        3      3      0
  SPZ1 WILD-TYPE    179    130     72
D1019V6, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPZ1 MUTATED        2      2      3      4
  SPZ1 WILD-TYPE    110     94     89    182
D1019V7, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPZ1 MUTATED        2      2      2      1      1      1      2
  SPZ1 WILD-TYPE     58     48     47     39     62    124     97
D1019V8, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPZ1 MUTATED        4      2      0      5
  SPZ1 WILD-TYPE    126     76     68    191
D1019V9, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SPZ1 MUTATED        1      2      1      2      3      1      1      0      0
  SPZ1 WILD-TYPE     39     60     27     78     66     47     42     28     74
D1019V10, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPZ1 MUTATED        1      0      1      2
  SPZ1 WILD-TYPE     32     31     26     17
D1019V11, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPZ1 MUTATED        2      0      0      2
  SPZ1 WILD-TYPE     52     10     24     20
D1019V12, multiclass
        clus
vv       SPZ1 MUTATED SPZ1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1020) Variable = MLLT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT1 MUTATED        1      0      0      0
  MLLT1 WILD-TYPE     45     58     64     43
D1020V1, multiclass
[1] "Remove cluster labels:" "MLLT1 MUTATED"         
clus
  MLLT1 MUTATED MLLT1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT1 MUTATED        1      0      0
  MLLT1 WILD-TYPE     50     83     77
D1020V2, multiclass
[1] "Remove cluster labels:" "MLLT1 MUTATED"         
clus
  MLLT1 MUTATED MLLT1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT1 MUTATED        3      1      2      0
  MLLT1 WILD-TYPE    175    182     99     20
D1020V3, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT1 MUTATED        1      2      2
  MLLT1 WILD-TYPE     86     78     98
D1020V4, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT1 MUTATED        2      3      1
  MLLT1 WILD-TYPE     87    157    137
D1020V5, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT1 MUTATED        1      3      2
  MLLT1 WILD-TYPE    181    130     70
D1020V6, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT1 MUTATED        1      3      1      1
  MLLT1 WILD-TYPE    111     93     91    185
D1020V7, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLLT1 MUTATED        1      1      1      1      1      0      1
  MLLT1 WILD-TYPE     59     49     48     39     62    125     98
D1020V8, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT1 MUTATED        3      1      1      1
  MLLT1 WILD-TYPE    127     77     67    195
D1020V9, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MLLT1 MUTATED        2      1      0      1      1      0      1      0
  MLLT1 WILD-TYPE     38     61     28     79     68     48     42     28
                 vv
clus              CLUS_9
  MLLT1 MUTATED        0
  MLLT1 WILD-TYPE     74
D1020V10, multiclass
        clus
vv       MLLT1 MUTATED MLLT1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT1 MUTATED        0      1      1      0
  MLLT1 WILD-TYPE     33     30     26     19
D1020V11, multiclass
[1] "Remove cluster labels:" "MLLT1 MUTATED"         
clus
  MLLT1 MUTATED MLLT1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AG-3731 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT1 MUTATED        0      1      1      0
  MLLT1 WILD-TYPE     54      9     23     22
D1020V12, multiclass
[1] "Remove cluster labels:" "MLLT1 MUTATED"         
clus
  MLLT1 MUTATED MLLT1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AG-3731 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" "MLLT1 WILD-TYPE" 

Clustering(1021) Variable = DLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL3 MUTATED        1      0      0      2
  DLL3 WILD-TYPE     45     58     64     41
D1021V1, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLL3 MUTATED        1      1      1
  DLL3 WILD-TYPE     50     82     76
D1021V2, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL3 MUTATED        7      0      0      0
  DLL3 WILD-TYPE    171    183    101     20
D1021V3, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLL3 MUTATED        2      0      2
  DLL3 WILD-TYPE     85     80     98
D1021V4, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLL3 MUTATED        0      2      4
  DLL3 WILD-TYPE     89    158    134
D1021V5, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLL3 MUTATED        3      2      1
  DLL3 WILD-TYPE    179    131     71
D1021V6, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL3 MUTATED        0      2      2      3
  DLL3 WILD-TYPE    112     94     90    183
D1021V7, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLL3 MUTATED        0      1      3      0      0      0      3
  DLL3 WILD-TYPE     60     49     46     40     63    125     96
D1021V8, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL3 MUTATED        2      0      0      5
  DLL3 WILD-TYPE    128     78     68    191
D1021V9, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DLL3 MUTATED        0      2      2      0      3      0      0      0      0
  DLL3 WILD-TYPE     40     60     26     80     66     48     43     28     74
D1021V10, multiclass
        clus
vv       DLL3 MUTATED DLL3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL3 MUTATED        0      0      0      2
  DLL3 WILD-TYPE     33     31     27     17
D1021V11, multiclass
[1] "Remove cluster labels:" "DLL3 MUTATED"          
clus
  DLL3 MUTATED DLL3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL3 MUTATED        0      0      2      0
  DLL3 WILD-TYPE     54     10     22     22
D1021V12, multiclass
[1] "Remove cluster labels:" "DLL3 MUTATED"          
clus
  DLL3 MUTATED DLL3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" "DLL3 WILD-TYPE" 

Clustering(1022) Variable = PHF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF1 MUTATED        0      1      0      0
  PHF1 WILD-TYPE     46     57     64     43
D1022V1, multiclass
[1] "Remove cluster labels:" "PHF1 MUTATED"          
clus
  PHF1 MUTATED PHF1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF1 MUTATED        0      0      1
  PHF1 WILD-TYPE     51     83     76
D1022V2, multiclass
[1] "Remove cluster labels:" "PHF1 MUTATED"          
clus
  PHF1 MUTATED PHF1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PHF1 WILD-TYPE" "PHF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF1 MUTATED        5      2      0      0
  PHF1 WILD-TYPE    173    181    101     20
D1022V3, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF1 MUTATED        2      1      3
  PHF1 WILD-TYPE     85     79     97
D1022V4, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF1 MUTATED        1      3      3
  PHF1 WILD-TYPE     88    157    135
D1022V5, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHF1 MUTATED        4      3      0
  PHF1 WILD-TYPE    178    130     72
D1022V6, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF1 MUTATED        1      2      3      1
  PHF1 WILD-TYPE    111     94     89    185
D1022V7, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF1 MUTATED        0      0      4      1      1      1      0
  PHF1 WILD-TYPE     60     50     45     39     62    124     99
D1022V8, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF1 MUTATED        4      2      0      0
  PHF1 WILD-TYPE    126     76     68    196
D1022V9, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PHF1 MUTATED        1      2      0      0      2      1      0      0      0
  PHF1 WILD-TYPE     39     60     28     80     67     47     43     28     74
D1022V10, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF1 MUTATED        1      0      0      2
  PHF1 WILD-TYPE     32     31     27     17
D1022V11, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF1 MUTATED        2      0      1      0
  PHF1 WILD-TYPE     52     10     23     22
D1022V12, multiclass
        clus
vv       PHF1 MUTATED PHF1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1023) Variable = IFNAR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNAR1 MUTATED        2      0      1      1
  IFNAR1 WILD-TYPE     44     58     63     42
D1023V1, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNAR1 MUTATED        2      1      1
  IFNAR1 WILD-TYPE     49     82     76
D1023V2, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNAR1 MUTATED        3      3      0      0
  IFNAR1 WILD-TYPE    175    180    101     20
D1023V3, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNAR1 MUTATED        1      1      1
  IFNAR1 WILD-TYPE     86     79     99
D1023V4, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNAR1 MUTATED        0      1      4
  IFNAR1 WILD-TYPE     89    159    134
D1023V5, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNAR1 MUTATED        3      2      0
  IFNAR1 WILD-TYPE    179    131     72
D1023V6, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNAR1 MUTATED        2      1      1      3
  IFNAR1 WILD-TYPE    110     95     91    183
D1023V7, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFNAR1 MUTATED        2      1      0      0      0      1      3
  IFNAR1 WILD-TYPE     58     49     49     40     63    124     96
D1023V8, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNAR1 MUTATED        2      0      1      4
  IFNAR1 WILD-TYPE    128     78     67    192
D1023V9, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFNAR1 MUTATED        1      0      2      0      1      0      1      1
  IFNAR1 WILD-TYPE     39     62     26     80     68     48     42     27
                  vv
clus               CLUS_9
  IFNAR1 MUTATED        1
  IFNAR1 WILD-TYPE     73
D1023V10, multiclass
        clus
vv       IFNAR1 MUTATED IFNAR1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNAR1 MUTATED        2      0      0      0
  IFNAR1 WILD-TYPE     31     31     27     19
D1023V11, multiclass
[1] "Remove cluster labels:" "IFNAR1 MUTATED"        
clus
  IFNAR1 MUTATED IFNAR1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNAR1 MUTATED        2      0      0      0
  IFNAR1 WILD-TYPE     52     10     24     22
D1023V12, multiclass
[1] "Remove cluster labels:" "IFNAR1 MUTATED"        
clus
  IFNAR1 MUTATED IFNAR1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" "IFNAR1 WILD-TYPE" 

Clustering(1024) Variable = MAP4K4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        2      0      0      4
  MAP4K4 WILD-TYPE     44     58     64     39
D1024V1, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K4 MUTATED        4      0      2
  MAP4K4 WILD-TYPE     47     83     75
D1024V2, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED       15      1      4      1
  MAP4K4 WILD-TYPE    163    182     97     19
D1024V3, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              1              182
  CLUS_3              4               97
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K4 MUTATED        8      1      6
  MAP4K4 WILD-TYPE     79     79     94
D1024V4, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K4 MUTATED        6      3      9
  MAP4K4 WILD-TYPE     83    157    129
D1024V5, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              3              157
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K4 MUTATED       10      2      6
  MAP4K4 WILD-TYPE    172    131     66
D1024V6, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              2              131
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        2      5      8      6
  MAP4K4 WILD-TYPE    110     91     84    180
D1024V7, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              8               84
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP4K4 MUTATED        1      3      7      2      3      0      5
  MAP4K4 WILD-TYPE     59     47     42     38     60    125     94
D1024V8, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              7               42
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        9      4      0      7
  MAP4K4 WILD-TYPE    121     74     68    189
D1024V9, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP4K4 MUTATED        4      4      2      2      7      0      0      1
  MAP4K4 WILD-TYPE     36     58     26     78     62     48     43     27
                  vv
clus               CLUS_9
  MAP4K4 MUTATED        0
  MAP4K4 WILD-TYPE     74
D1024V10, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        1      1      0      1
  MAP4K4 WILD-TYPE     32     30     27     18
D1024V11, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        2      0      0      1
  MAP4K4 WILD-TYPE     52     10     24     21
D1024V12, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1025) Variable = CSNK2A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        0      1      0      0
  CSNK2A2 WILD-TYPE     46     57     64     43
D1025V1, multiclass
[1] "Remove cluster labels:" "CSNK2A2 MUTATED"       
clus
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3696 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK2A2 MUTATED        0      1      0
  CSNK2A2 WILD-TYPE     51     82     77
D1025V2, multiclass
[1] "Remove cluster labels:" "CSNK2A2 MUTATED"       
clus
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3696 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        4      3      0      0
  CSNK2A2 WILD-TYPE    174    180    101     20
D1025V3, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK2A2 MUTATED        1      1      4
  CSNK2A2 WILD-TYPE     86     79     96
D1025V4, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK2A2 MUTATED        1      2      3
  CSNK2A2 WILD-TYPE     88    158    135
D1025V5, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK2A2 MUTATED        4      2      0
  CSNK2A2 WILD-TYPE    178    131     72
D1025V6, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        2      3      2      0
  CSNK2A2 WILD-TYPE    110     93     90    186
D1025V7, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSNK2A2 MUTATED        0      2      3      0      1      1      0
  CSNK2A2 WILD-TYPE     60     48     46     40     62    124     99
D1025V8, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        3      1      1      2
  CSNK2A2 WILD-TYPE    127     77     67    194
D1025V9, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSNK2A2 MUTATED        1      3      0      1      2      0      0      0
  CSNK2A2 WILD-TYPE     39     59     28     79     67     48     43     28
                   vv
clus                CLUS_9
  CSNK2A2 MUTATED        0
  CSNK2A2 WILD-TYPE     74
D1025V10, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        0      0      0      1
  CSNK2A2 WILD-TYPE     33     31     27     18
D1025V11, multiclass
[1] "Remove cluster labels:" "CSNK2A2 MUTATED"       
clus
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-G5-6641 
"CSNK2A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        1      0      0      0
  CSNK2A2 WILD-TYPE     53     10     24     22
D1025V12, multiclass
[1] "Remove cluster labels:" "CSNK2A2 MUTATED"       
clus
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" "CSNK2A2 WILD-TYPE" 
       TCGA-G5-6641 
"CSNK2A2 WILD-TYPE" 

Clustering(1026) Variable = CBX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        2      0      1      0
  CBX3 WILD-TYPE     44     58     63     43
D1026V1, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        2      0      1
  CBX3 WILD-TYPE     49     83     76
D1026V2, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        6      1      0      0
  CBX3 WILD-TYPE    172    182    101     20
D1026V3, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        0      0      4
  CBX3 WILD-TYPE     87     80     96
D1026V4, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        0      2      4
  CBX3 WILD-TYPE     89    158    134
D1026V5, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CBX3 MUTATED        3      3      0
  CBX3 WILD-TYPE    179    130     72
D1026V6, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        0      4      0      3
  CBX3 WILD-TYPE    112     92     92    183
D1026V7, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            0             92
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBX3 MUTATED        0      1      3      0      0      1      2
  CBX3 WILD-TYPE     60     49     46     40     63    124     97
D1026V8, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        3      0      0      4
  CBX3 WILD-TYPE    127     78     68    192
D1026V9, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CBX3 MUTATED        0      0      0      2      4      0      1      0      0
  CBX3 WILD-TYPE     40     62     28     78     65     48     42     28     74
D1026V10, multiclass
        clus
vv       CBX3 MUTATED CBX3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        0      0      0      1
  CBX3 WILD-TYPE     33     31     27     18
D1026V11, multiclass
[1] "Remove cluster labels:" "CBX3 MUTATED"          
clus
  CBX3 MUTATED CBX3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-G5-6641 
"CBX3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBX3 MUTATED        0      0      1      0
  CBX3 WILD-TYPE     54     10     23     22
D1026V12, multiclass
[1] "Remove cluster labels:" "CBX3 MUTATED"          
clus
  CBX3 MUTATED CBX3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" "CBX3 WILD-TYPE" 
    TCGA-G5-6641 
"CBX3 WILD-TYPE" 

Clustering(1027) Variable = MCART1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCART1 MUTATED        2      0      0      0
  MCART1 WILD-TYPE     44     58     64     43
D1027V1, multiclass
[1] "Remove cluster labels:" "MCART1 MUTATED"        
clus
  MCART1 MUTATED MCART1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AY-4071 
"MCART1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCART1 MUTATED        2      0      0
  MCART1 WILD-TYPE     49     83     77
D1027V2, multiclass
[1] "Remove cluster labels:" "MCART1 MUTATED"        
clus
  MCART1 MUTATED MCART1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" "MCART1 WILD-TYPE" 
      TCGA-AY-4071 
"MCART1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCART1 MUTATED       11      0      2      0
  MCART1 WILD-TYPE    167    183     99     20
D1027V3, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCART1 MUTATED        4      0      7
  MCART1 WILD-TYPE     83     80     93
D1027V4, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCART1 MUTATED        2      4      4
  MCART1 WILD-TYPE     87    156    134
D1027V5, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MCART1 MUTATED        2      4      4
  MCART1 WILD-TYPE    180    129     68
D1027V6, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              4              129
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCART1 MUTATED        1      7      3      2
  MCART1 WILD-TYPE    111     89     89    184
D1027V7, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              7               89
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MCART1 MUTATED        1      3      3      1      2      0      3
  MCART1 WILD-TYPE     59     47     46     39     61    125     96
D1027V8, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCART1 MUTATED        6      1      2      4
  MCART1 WILD-TYPE    124     77     66    192
D1027V9, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MCART1 MUTATED        2      0      1      2      5      0      1      1
  MCART1 WILD-TYPE     38     62     27     78     64     48     42     27
                  vv
clus               CLUS_9
  MCART1 MUTATED        1
  MCART1 WILD-TYPE     73
D1027V10, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCART1 MUTATED        0      1      2      1
  MCART1 WILD-TYPE     33     30     25     18
D1027V11, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCART1 MUTATED        1      0      1      2
  MCART1 WILD-TYPE     53     10     23     20
D1027V12, multiclass
        clus
vv       MCART1 MUTATED MCART1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1028) Variable = USP28 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        5      1      2      4
  USP28 WILD-TYPE     41     57     62     39
D1028V1, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        6      3      3
  USP28 WILD-TYPE     45     80     74
D1028V2, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED       17      6      4      0
  USP28 WILD-TYPE    161    177     97     20
D1028V3, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             6             177
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        3      6      8
  USP28 WILD-TYPE     84     74     92
D1028V4, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             6              74
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        1      9     12
  USP28 WILD-TYPE     88    151    126
D1028V5, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED       10      9      3
  USP28 WILD-TYPE    172    124     69
D1028V6, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             9             124
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        6      7      3     12
  USP28 WILD-TYPE    106     89     89    174
D1028V7, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4            12             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP28 MUTATED        4      4      4      0      3      2     11
  USP28 WILD-TYPE     56     46     45     40     60    123     88
D1028V8, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        7      2      4     14
  USP28 WILD-TYPE    123     76     64    182
D1028V9, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             4              64
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP28 MUTATED        1      3      2      6      9      2      2      0
  USP28 WILD-TYPE     39     59     26     74     60     46     41     28
                 vv
clus              CLUS_9
  USP28 MUTATED        2
  USP28 WILD-TYPE     72
D1028V10, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             6              74
  CLUS_5             9              60
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        1      1      2      1
  USP28 WILD-TYPE     32     30     25     18
D1028V11, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        1      2      0      2
  USP28 WILD-TYPE     53      8     24     20
D1028V12, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             2               8
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1029) Variable = ZBP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBP1 MUTATED        3      0      1      3
  ZBP1 WILD-TYPE     43     58     63     40
D1029V1, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZBP1 MUTATED        3      2      2
  ZBP1 WILD-TYPE     48     81     75
D1029V2, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBP1 MUTATED        9      2      1      1
  ZBP1 WILD-TYPE    169    181    100     19
D1029V3, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZBP1 MUTATED        4      1      1
  ZBP1 WILD-TYPE     83     79     99
D1029V4, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZBP1 MUTATED        2      3      4
  ZBP1 WILD-TYPE     87    157    134
D1029V5, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZBP1 MUTATED        5      2      2
  ZBP1 WILD-TYPE    177    131     70
D1029V6, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBP1 MUTATED        0      4      1      8
  ZBP1 WILD-TYPE    112     92     91    178
D1029V7, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBP1 MUTATED        0      1      2      2      0      3      5
  ZBP1 WILD-TYPE     60     49     47     38     63    122     94
D1029V8, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            3            122
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBP1 MUTATED        3      1      0      8
  ZBP1 WILD-TYPE    127     77     68    188
D1029V9, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZBP1 MUTATED        0      0      3      1      5      0      2      0      1
  ZBP1 WILD-TYPE     40     62     25     79     64     48     41     28     73
D1029V10, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBP1 MUTATED        1      1      0      2
  ZBP1 WILD-TYPE     32     30     27     17
D1029V11, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBP1 MUTATED        2      0      2      0
  ZBP1 WILD-TYPE     52     10     22     22
D1029V12, multiclass
        clus
vv       ZBP1 MUTATED ZBP1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1030) Variable = MYLK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK4 MUTATED        1      0      0      0
  MYLK4 WILD-TYPE     45     58     64     43
D1030V1, multiclass
[1] "Remove cluster labels:" "MYLK4 MUTATED"         
clus
  MYLK4 MUTATED MYLK4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYLK4 MUTATED        1      0      0
  MYLK4 WILD-TYPE     50     83     77
D1030V2, multiclass
[1] "Remove cluster labels:" "MYLK4 MUTATED"         
clus
  MYLK4 MUTATED MYLK4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MYLK4 WILD-TYPE" "MYLK4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK4 MUTATED        5      5      0      3
  MYLK4 WILD-TYPE    173    178    101     17
D1030V3, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYLK4 MUTATED        5      5      3
  MYLK4 WILD-TYPE     82     75     97
D1030V4, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             5              75
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYLK4 MUTATED        2      6      5
  MYLK4 WILD-TYPE     87    154    133
D1030V5, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYLK4 MUTATED        6      3      4
  MYLK4 WILD-TYPE    176    130     68
D1030V6, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             3             130
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK4 MUTATED        5      3      4      2
  MYLK4 WILD-TYPE    107     93     88    184
D1030V7, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYLK4 MUTATED        1      2      2      4      3      0      2
  MYLK4 WILD-TYPE     59     48     47     36     60    125     97
D1030V8, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             4              36
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK4 MUTATED        7      4      1      2
  MYLK4 WILD-TYPE    123     74     67    194
D1030V9, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYLK4 MUTATED        4      4      1      1      1      1      1      0
  MYLK4 WILD-TYPE     36     58     27     79     68     47     42     28
                 vv
clus              CLUS_9
  MYLK4 MUTATED        1
  MYLK4 WILD-TYPE     73
D1030V10, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK4 MUTATED        3      1      0      1
  MYLK4 WILD-TYPE     30     30     27     18
D1030V11, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK4 MUTATED        3      0      0      2
  MYLK4 WILD-TYPE     51     10     24     20
D1030V12, multiclass
        clus
vv       MYLK4 MUTATED MYLK4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1031) Variable = FER MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        3      0      1      2
  FER WILD-TYPE     43     58     63     41
D1031V1, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        2      3      1
  FER WILD-TYPE     49     80     76
D1031V2, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           2            49
  CLUS_2           3            80
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED       11      2      3      1
  FER WILD-TYPE    167    181     98     19
D1031V3, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1          11           167
  CLUS_2           2           181
  CLUS_3           3            98
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        4      3      4
  FER WILD-TYPE     83     77     96
D1031V4, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            83
  CLUS_2           3            77
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        0      5     10
  FER WILD-TYPE     89    155    128
D1031V5, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           0            89
  CLUS_2           5           155
  CLUS_3          10           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        8      5      2
  FER WILD-TYPE    174    128     70
D1031V6, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           8           174
  CLUS_2           5           128
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        3      4      4      6
  FER WILD-TYPE    109     92     88    180
D1031V7, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3           109
  CLUS_2           4            92
  CLUS_3           4            88
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FER MUTATED        3      4      5      0      0      2      3
  FER WILD-TYPE     57     46     44     40     63    123     96
D1031V8, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3            57
  CLUS_2           4            46
  CLUS_3           5            44
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           2           123
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        7      2      1      7
  FER WILD-TYPE    123     76     67    189
D1031V9, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           7           123
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FER MUTATED        0      3      3      3      3      1      3      0      1
  FER WILD-TYPE     40     59     25     77     66     47     40     28     73
D1031V10, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           0            40
  CLUS_2           3            59
  CLUS_3           3            25
  CLUS_4           3            77
  CLUS_5           3            66
  CLUS_6           1            47
  CLUS_7           3            40
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        2      0      1      2
  FER WILD-TYPE     31     31     26     17
D1031V11, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            31
  CLUS_3           1            26
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        4      0      1      0
  FER WILD-TYPE     50     10     23     22
D1031V12, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            50
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1032) Variable = GNA11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA11 MUTATED        0      0      0      1
  GNA11 WILD-TYPE     46     58     64     42
D1032V1, multiclass
[1] "Remove cluster labels:" "GNA11 MUTATED"         
clus
  GNA11 MUTATED GNA11 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA11 MUTATED        1      0      0
  GNA11 WILD-TYPE     50     83     77
D1032V2, multiclass
[1] "Remove cluster labels:" "GNA11 MUTATED"         
clus
  GNA11 MUTATED GNA11 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GNA11 WILD-TYPE" "GNA11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA11 MUTATED        6      1      0      0
  GNA11 WILD-TYPE    172    182    101     20
D1032V3, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA11 MUTATED        4      0      2
  GNA11 WILD-TYPE     83     80     98
D1032V4, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA11 MUTATED        1      1      4
  GNA11 WILD-TYPE     88    159    134
D1032V5, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA11 MUTATED        3      2      1
  GNA11 WILD-TYPE    179    131     71
D1032V6, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA11 MUTATED        1      3      3      0
  GNA11 WILD-TYPE    111     93     89    186
D1032V7, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNA11 MUTATED        1      3      2      0      1      0      0
  GNA11 WILD-TYPE     59     47     47     40     62    125     99
D1032V8, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA11 MUTATED        3      2      0      2
  GNA11 WILD-TYPE    127     76     68    194
D1032V9, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GNA11 MUTATED        1      3      0      1      2      0      0      0
  GNA11 WILD-TYPE     39     59     28     79     67     48     43     28
                 vv
clus              CLUS_9
  GNA11 MUTATED        0
  GNA11 WILD-TYPE     74
D1032V10, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA11 MUTATED        1      1      0      1
  GNA11 WILD-TYPE     32     30     27     18
D1032V11, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA11 MUTATED        3      0      0      0
  GNA11 WILD-TYPE     51     10     24     22
D1032V12, multiclass
        clus
vv       GNA11 MUTATED GNA11 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1033) Variable = CHRNA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA1 MUTATED        1      1      1      1
  CHRNA1 WILD-TYPE     45     57     63     42
D1033V1, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA1 MUTATED        1      2      1
  CHRNA1 WILD-TYPE     50     81     76
D1033V2, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA1 MUTATED        6      5      1      0
  CHRNA1 WILD-TYPE    172    178    100     20
D1033V3, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA1 MUTATED        2      4      2
  CHRNA1 WILD-TYPE     85     76     98
D1033V4, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              4               76
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA1 MUTATED        0      6      3
  CHRNA1 WILD-TYPE     89    154    135
D1033V5, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA1 MUTATED        3      5      1
  CHRNA1 WILD-TYPE    179    128     71
D1033V6, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA1 MUTATED        5      1      2      4
  CHRNA1 WILD-TYPE    107     95     90    182
D1033V7, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHRNA1 MUTATED        4      0      2      1      2      2      1
  CHRNA1 WILD-TYPE     56     50     47     39     61    123     98
D1033V8, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA1 MUTATED        5      2      2      3
  CHRNA1 WILD-TYPE    125     76     66    193
D1033V9, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHRNA1 MUTATED        4      2      0      2      3      0      0      0
  CHRNA1 WILD-TYPE     36     60     28     78     66     48     43     28
                  vv
clus               CLUS_9
  CHRNA1 MUTATED        1
  CHRNA1 WILD-TYPE     73
D1033V10, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA1 MUTATED        2      0      1      0
  CHRNA1 WILD-TYPE     31     31     26     19
D1033V11, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA1 MUTATED        2      1      0      0
  CHRNA1 WILD-TYPE     52      9     24     22
D1033V12, multiclass
        clus
vv       CHRNA1 MUTATED CHRNA1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1034) Variable = SLC16A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        2      0      0      1
  SLC16A1 WILD-TYPE     44     58     64     42
D1034V1, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        2      0      1
  SLC16A1 WILD-TYPE     49     83     76
D1034V2, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        7      2      1      0
  SLC16A1 WILD-TYPE    171    181    100     20
D1034V3, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        2      0      5
  SLC16A1 WILD-TYPE     85     80     95
D1034V4, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        2      4      2
  SLC16A1 WILD-TYPE     87    156    136
D1034V5, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        3      3      2
  SLC16A1 WILD-TYPE    179    130     70
D1034V6, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        0      4      3      3
  SLC16A1 WILD-TYPE    112     92     89    183
D1034V7, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC16A1 MUTATED        0      1      3      0      2      1      3
  SLC16A1 WILD-TYPE     60     49     46     40     61    124     96
D1034V8, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        4      2      0      4
  SLC16A1 WILD-TYPE    126     76     68    192
D1034V9, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC16A1 MUTATED        1      3      1      0      4      0      0      0
  SLC16A1 WILD-TYPE     39     59     27     80     65     48     43     28
                   vv
clus                CLUS_9
  SLC16A1 MUTATED        1
  SLC16A1 WILD-TYPE     73
D1034V10, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        0      0      0      1
  SLC16A1 WILD-TYPE     33     31     27     18
D1034V11, multiclass
[1] "Remove cluster labels:" "SLC16A1 MUTATED"       
clus
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G5-6641 
"SLC16A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        1      0      0      0
  SLC16A1 WILD-TYPE     53     10     24     22
D1034V12, multiclass
[1] "Remove cluster labels:" "SLC16A1 MUTATED"       
clus
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" "SLC16A1 WILD-TYPE" 
       TCGA-G5-6641 
"SLC16A1 WILD-TYPE" 

Clustering(1035) Variable = TRAM1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        2      0      0      2
  TRAM1L1 WILD-TYPE     44     58     64     41
D1035V1, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        3      1      0
  TRAM1L1 WILD-TYPE     48     82     77
D1035V2, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        8      3      2      0
  TRAM1L1 WILD-TYPE    170    180     99     20
D1035V3, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               3               180
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        2      2      6
  TRAM1L1 WILD-TYPE     85     78     94
D1035V4, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        2      7      5
  TRAM1L1 WILD-TYPE     87    153    133
D1035V5, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               7               153
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        7      4      3
  TRAM1L1 WILD-TYPE    175    129     69
D1035V6, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               4               129
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        2      4      3      5
  TRAM1L1 WILD-TYPE    110     92     89    181
D1035V7, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               4                92
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRAM1L1 MUTATED        0      0      4      1      4      1      4
  TRAM1L1 WILD-TYPE     60     50     45     39     59    124     95
D1035V8, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               4                59
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        5      2      2      4
  TRAM1L1 WILD-TYPE    125     76     66    192
D1035V9, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRAM1L1 MUTATED        2      4      1      1      4      0      0      0
  TRAM1L1 WILD-TYPE     38     58     27     79     65     48     43     28
                   vv
clus                CLUS_9
  TRAM1L1 MUTATED        1
  TRAM1L1 WILD-TYPE     73
D1035V10, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        1      1      1      1
  TRAM1L1 WILD-TYPE     32     30     26     18
D1035V11, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        1      2      1      0
  TRAM1L1 WILD-TYPE     53      8     23     22
D1035V12, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               2                 8
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1036) Variable = MRPL13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL13 MUTATED        1      0      0      1
  MRPL13 WILD-TYPE     45     58     64     42
D1036V1, multiclass
[1] "Remove cluster labels:" "MRPL13 MUTATED"        
clus
  MRPL13 MUTATED MRPL13 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AY-4071 
"MRPL13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL13 MUTATED        1      0      1
  MRPL13 WILD-TYPE     50     83     76
D1036V2, multiclass
[1] "Remove cluster labels:" "MRPL13 MUTATED"        
clus
  MRPL13 MUTATED MRPL13 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AY-4071 
"MRPL13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL13 MUTATED        6      1      1      0
  MRPL13 WILD-TYPE    172    182    100     20
D1036V3, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL13 MUTATED        4      1      1
  MRPL13 WILD-TYPE     83     79     99
D1036V4, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL13 MUTATED        0      1      5
  MRPL13 WILD-TYPE     89    159    133
D1036V5, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL13 MUTATED        4      1      1
  MRPL13 WILD-TYPE    178    132     71
D1036V6, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL13 MUTATED        2      1      3      2
  MRPL13 WILD-TYPE    110     95     89    184
D1036V7, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPL13 MUTATED        2      1      2      1      0      0      2
  MRPL13 WILD-TYPE     58     49     47     39     63    125     97
D1036V8, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL13 MUTATED        3      1      0      4
  MRPL13 WILD-TYPE    127     77     68    192
D1036V9, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRPL13 MUTATED        0      2      1      1      2      1      0      0
  MRPL13 WILD-TYPE     40     60     27     79     67     47     43     28
                  vv
clus               CLUS_9
  MRPL13 MUTATED        1
  MRPL13 WILD-TYPE     73
D1036V10, multiclass
        clus
vv       MRPL13 MUTATED MRPL13 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL13 MUTATED        0      1      0      1
  MRPL13 WILD-TYPE     33     30     27     18
D1036V11, multiclass
[1] "Remove cluster labels:" "MRPL13 MUTATED"        
clus
  MRPL13 MUTATED MRPL13 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL13 MUTATED        1      0      1      0
  MRPL13 WILD-TYPE     53     10     23     22
D1036V12, multiclass
[1] "Remove cluster labels:" "MRPL13 MUTATED"        
clus
  MRPL13 MUTATED MRPL13 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" "MRPL13 WILD-TYPE" 

Clustering(1037) Variable = MARVELD2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD2 MUTATED        1      0      0      1
  MARVELD2 WILD-TYPE     45     58     64     42
D1037V1, multiclass
[1] "Remove cluster labels:" "MARVELD2 MUTATED"      
clus
  MARVELD2 MUTATED MARVELD2 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3854         TCGA-AA-3855 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MARVELD2 MUTATED        2      0      0
  MARVELD2 WILD-TYPE     49     83     77
D1037V2, multiclass
[1] "Remove cluster labels:" "MARVELD2 MUTATED"      
clus
  MARVELD2 MUTATED MARVELD2 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3854         TCGA-AA-3855 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD2 MUTATED        9      0      1      0
  MARVELD2 WILD-TYPE    169    183    100     20
D1037V3, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MARVELD2 MUTATED        6      1      2
  MARVELD2 WILD-TYPE     81     79     98
D1037V4, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                6                 81
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MARVELD2 MUTATED        2      2      6
  MARVELD2 WILD-TYPE     87    158    132
D1037V5, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                2                158
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MARVELD2 MUTATED        6      2      2
  MARVELD2 WILD-TYPE    176    131     70
D1037V6, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                2                131
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD2 MUTATED        0      6      2      3
  MARVELD2 WILD-TYPE    112     90     90    183
D1037V7, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                6                 90
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MARVELD2 MUTATED        0      1      7      0      0      1      2
  MARVELD2 WILD-TYPE     60     49     42     40     63    124     97
D1037V8, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                7                 42
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD2 MUTATED        6      1      0      3
  MARVELD2 WILD-TYPE    124     77     68    193
D1037V9, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MARVELD2 MUTATED        0      3      0      2      4      0      0      0
  MARVELD2 WILD-TYPE     40     59     28     78     65     48     43     28
                    vv
clus                 CLUS_9
  MARVELD2 MUTATED        1
  MARVELD2 WILD-TYPE     73
D1037V10, multiclass
        clus
vv       MARVELD2 MUTATED MARVELD2 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD2 MUTATED        0      0      0      2
  MARVELD2 WILD-TYPE     33     31     27     17
D1037V11, multiclass
[1] "Remove cluster labels:" "MARVELD2 MUTATED"      
clus
  MARVELD2 MUTATED MARVELD2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6625 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD2 MUTATED        1      0      1      0
  MARVELD2 WILD-TYPE     53     10     23     22
D1037V12, multiclass
[1] "Remove cluster labels:" "MARVELD2 MUTATED"      
clus
  MARVELD2 MUTATED MARVELD2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6625 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" "MARVELD2 WILD-TYPE" 

Clustering(1038) Variable = PAX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        3      0      0      2
  PAX6 WILD-TYPE     43     58     64     41
D1038V1, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED        4      0      1
  PAX6 WILD-TYPE     47     83     76
D1038V2, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED       11      2      1      2
  PAX6 WILD-TYPE    167    181    100     18
D1038V3, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED        5      0      6
  PAX6 WILD-TYPE     82     80     94
D1038V4, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED        1      6      8
  PAX6 WILD-TYPE     88    154    130
D1038V5, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED        8      6      1
  PAX6 WILD-TYPE    174    127     71
D1038V6, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        1      7      3      5
  PAX6 WILD-TYPE    111     89     89    181
D1038V7, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAX6 MUTATED        1      2      4      1      2      0      6
  PAX6 WILD-TYPE     59     48     45     39     61    125     93
D1038V8, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        5      3      0      7
  PAX6 WILD-TYPE    125     75     68    189
D1038V9, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAX6 MUTATED        1      3      1      1      8      0      0      0      1
  PAX6 WILD-TYPE     39     59     27     79     61     48     43     28     73
D1038V10, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            8             61
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        1      0      1      1
  PAX6 WILD-TYPE     32     31     26     18
D1038V11, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        2      0      1      0
  PAX6 WILD-TYPE     52     10     23     22
D1038V12, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1039) Variable = ZNF547 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF547 MUTATED        0      0      0      2
  ZNF547 WILD-TYPE     46     58     64     41
D1039V1, multiclass
[1] "Remove cluster labels:" "ZNF547 MUTATED"        
clus
  ZNF547 MUTATED ZNF547 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF547 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF547 MUTATED        0      0      2
  ZNF547 WILD-TYPE     51     83     75
D1039V2, multiclass
[1] "Remove cluster labels:" "ZNF547 MUTATED"        
clus
  ZNF547 MUTATED ZNF547 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF547 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF547 MUTATED        6      2      1      1
  ZNF547 WILD-TYPE    172    181    100     19
D1039V3, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF547 MUTATED        3      2      3
  ZNF547 WILD-TYPE     84     78     97
D1039V4, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF547 MUTATED        0      4      5
  ZNF547 WILD-TYPE     89    156    133
D1039V5, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF547 MUTATED        4      4      1
  ZNF547 WILD-TYPE    178    129     71
D1039V6, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF547 MUTATED        3      2      3      2
  ZNF547 WILD-TYPE    109     94     89    184
D1039V7, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF547 MUTATED        3      0      3      1      2      0      1
  ZNF547 WILD-TYPE     57     50     46     39     61    125     98
D1039V8, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF547 MUTATED        2      2      2      4
  ZNF547 WILD-TYPE    128     76     66    192
D1039V9, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF547 MUTATED        1      3      1      0      3      0      2      0
  ZNF547 WILD-TYPE     39     59     27     80     66     48     41     28
                  vv
clus               CLUS_9
  ZNF547 MUTATED        0
  ZNF547 WILD-TYPE     74
D1039V10, multiclass
        clus
vv       ZNF547 MUTATED ZNF547 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF547 MUTATED        0      0      1      0
  ZNF547 WILD-TYPE     33     31     26     19
D1039V11, multiclass
[1] "Remove cluster labels:" "ZNF547 MUTATED"        
clus
  ZNF547 MUTATED ZNF547 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1DA 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF547 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF547 MUTATED        0      0      0      1
  ZNF547 WILD-TYPE     54     10     24     21
D1039V12, multiclass
[1] "Remove cluster labels:" "ZNF547 MUTATED"        
clus
  ZNF547 MUTATED ZNF547 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1DA 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" "ZNF547 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF547 WILD-TYPE" 

Clustering(1040) Variable = ADCY9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY9 MUTATED        1      1      1      1
  ADCY9 WILD-TYPE     45     57     63     42
D1040V1, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADCY9 MUTATED        1      1      2
  ADCY9 WILD-TYPE     50     82     75
D1040V2, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY9 MUTATED       12      4      4      0
  ADCY9 WILD-TYPE    166    179     97     20
D1040V3, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADCY9 MUTATED        6      3      6
  ADCY9 WILD-TYPE     81     77     94
D1040V4, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADCY9 MUTATED        2      7      8
  ADCY9 WILD-TYPE     87    153    130
D1040V5, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             7             153
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADCY9 MUTATED        8      5      4
  ADCY9 WILD-TYPE    174    128     68
D1040V6, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY9 MUTATED        3      5      7      5
  ADCY9 WILD-TYPE    109     91     85    181
D1040V7, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADCY9 MUTATED        2      4      6      2      2      2      2
  ADCY9 WILD-TYPE     58     46     43     38     61    123     97
D1040V8, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY9 MUTATED        7      4      1      8
  ADCY9 WILD-TYPE    123     74     67    188
D1040V9, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADCY9 MUTATED        1      4      2      2      7      1      1      0
  ADCY9 WILD-TYPE     39     58     26     78     62     47     42     28
                 vv
clus              CLUS_9
  ADCY9 MUTATED        2
  ADCY9 WILD-TYPE     72
D1040V10, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY9 MUTATED        1      1      0      3
  ADCY9 WILD-TYPE     32     30     27     16
D1040V11, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY9 MUTATED        2      0      1      2
  ADCY9 WILD-TYPE     52     10     23     20
D1040V12, multiclass
        clus
vv       ADCY9 MUTATED ADCY9 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1041) Variable = AGAP4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP4 MUTATED        0      0      0      0
  AGAP4 WILD-TYPE     46     58     64     43
D1041V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP4 MUTATED        0      0      0
  AGAP4 WILD-TYPE     51     83     77
D1041V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP4 MUTATED        1      2      0      1
  AGAP4 WILD-TYPE    177    181    101     19
D1041V3, multiclass
        clus
vv       AGAP4 MUTATED AGAP4 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP4 MUTATED        4      0      0
  AGAP4 WILD-TYPE     83     80    100
D1041V4, multiclass
        clus
vv       AGAP4 MUTATED AGAP4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP4 MUTATED        0      0      1
  AGAP4 WILD-TYPE     89    160    137
D1041V5, multiclass
[1] "Remove cluster labels:" "AGAP4 MUTATED"         
clus
  AGAP4 MUTATED AGAP4 WILD-TYPE 
              1             386 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AH-6644      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6928      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP4 MUTATED        1      0      0
  AGAP4 WILD-TYPE    181    133     72
D1041V6, multiclass
[1] "Remove cluster labels:" "AGAP4 MUTATED"         
clus
  AGAP4 MUTATED AGAP4 WILD-TYPE 
              1             386 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AH-6644      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6928      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP4 MUTATED        1      1      2      0
  AGAP4 WILD-TYPE    111     95     90    186
D1041V7, multiclass
        clus
vv       AGAP4 MUTATED AGAP4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGAP4 MUTATED        0      1      1      1      1      0      0
  AGAP4 WILD-TYPE     60     49     48     39     62    125     99
D1041V8, multiclass
        clus
vv       AGAP4 MUTATED AGAP4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP4 MUTATED        2      1      1      0
  AGAP4 WILD-TYPE    128     77     67    196
D1041V9, multiclass
        clus
vv       AGAP4 MUTATED AGAP4 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGAP4 MUTATED        0      1      0      1      0      0      2      0
  AGAP4 WILD-TYPE     40     61     28     79     69     48     41     28
                 vv
clus              CLUS_9
  AGAP4 MUTATED        0
  AGAP4 WILD-TYPE     74
D1041V10, multiclass
        clus
vv       AGAP4 MUTATED AGAP4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP4 MUTATED        1      1      0      0
  AGAP4 WILD-TYPE     32     30     27     19
D1041V11, multiclass
[1] "Remove cluster labels:" "AGAP4 MUTATED"         
clus
  AGAP4 MUTATED AGAP4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-4110 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP4 MUTATED        1      0      0      1
  AGAP4 WILD-TYPE     53     10     24     21
D1041V12, multiclass
[1] "Remove cluster labels:" "AGAP4 MUTATED"         
clus
  AGAP4 MUTATED AGAP4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-4110 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" "AGAP4 WILD-TYPE" 

Clustering(1042) Variable = OR11H12 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11H12 MUTATED        0      1      0      0
  OR11H12 WILD-TYPE     46     57     64     43
D1042V1, multiclass
[1] "Remove cluster labels:" "OR11H12 MUTATED"       
clus
  OR11H12 MUTATED OR11H12 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OR11H12 MUTATED        0      1      0
  OR11H12 WILD-TYPE     51     82     77
D1042V2, multiclass
[1] "Remove cluster labels:" "OR11H12 MUTATED"       
clus
  OR11H12 MUTATED OR11H12 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11H12 MUTATED        1      3      1      0
  OR11H12 WILD-TYPE    177    180    100     20
D1042V3, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               1               177
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OR11H12 MUTATED        2      0      2
  OR11H12 WILD-TYPE     85     80     98
D1042V4, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OR11H12 MUTATED        1      1      2
  OR11H12 WILD-TYPE     88    159    136
D1042V5, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OR11H12 MUTATED        2      1      1
  OR11H12 WILD-TYPE    180    132     71
D1042V6, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11H12 MUTATED        1      2      1      1
  OR11H12 WILD-TYPE    111     94     91    185
D1042V7, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR11H12 MUTATED        1      1      1      1      0      1      0
  OR11H12 WILD-TYPE     59     49     48     39     63    124     99
D1042V8, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11H12 MUTATED        3      0      2      0
  OR11H12 WILD-TYPE    127     78     66    196
D1042V9, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               2                66
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR11H12 MUTATED        2      0      0      0      0      0      2      0
  OR11H12 WILD-TYPE     38     62     28     80     69     48     41     28
                   vv
clus                CLUS_9
  OR11H12 MUTATED        1
  OR11H12 WILD-TYPE     73
D1042V10, multiclass
        clus
vv       OR11H12 MUTATED OR11H12 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               0                69
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11H12 MUTATED        0      0      1      1
  OR11H12 WILD-TYPE     33     31     26     18
D1042V11, multiclass
[1] "Remove cluster labels:" "OR11H12 MUTATED"       
clus
  OR11H12 MUTATED OR11H12 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6641 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR11H12 MUTATED        1      0      1      0
  OR11H12 WILD-TYPE     53     10     23     22
D1042V12, multiclass
[1] "Remove cluster labels:" "OR11H12 MUTATED"       
clus
  OR11H12 MUTATED OR11H12 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6641 
"OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" "OR11H12 WILD-TYPE" 

Clustering(1043) Variable = SLC22A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A3 MUTATED        1      0      0      2
  SLC22A3 WILD-TYPE     45     58     64     41
D1043V1, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A3 MUTATED        1      1      1
  SLC22A3 WILD-TYPE     50     82     76
D1043V2, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A3 MUTATED       11      1      1      0
  SLC22A3 WILD-TYPE    167    182    100     20
D1043V3, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A3 MUTATED        5      1      4
  SLC22A3 WILD-TYPE     82     79     96
D1043V4, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A3 MUTATED        2      5      4
  SLC22A3 WILD-TYPE     87    155    134
D1043V5, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               5               155
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A3 MUTATED        5      6      0
  SLC22A3 WILD-TYPE    177    127     72
D1043V6, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               6               127
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A3 MUTATED        1      3      5      4
  SLC22A3 WILD-TYPE    111     93     87    182
D1043V7, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               5                87
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC22A3 MUTATED        2      3      4      0      1      0      3
  SLC22A3 WILD-TYPE     58     47     45     40     62    125     96
D1043V8, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A3 MUTATED        5      3      1      4
  SLC22A3 WILD-TYPE    125     75     67    192
D1043V9, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC22A3 MUTATED        1      3      1      1      3      0      2      1
  SLC22A3 WILD-TYPE     39     59     27     79     66     48     41     27
                   vv
clus                CLUS_9
  SLC22A3 MUTATED        1
  SLC22A3 WILD-TYPE     73
D1043V10, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A3 MUTATED        1      0      0      2
  SLC22A3 WILD-TYPE     32     31     27     17
D1043V11, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A3 MUTATED        2      0      1      0
  SLC22A3 WILD-TYPE     52     10     23     22
D1043V12, multiclass
        clus
vv       SLC22A3 MUTATED SLC22A3 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1044) Variable = ATAD2B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2B MUTATED        2      2      0      2
  ATAD2B WILD-TYPE     44     56     64     41
D1044V1, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATAD2B MUTATED        2      3      1
  ATAD2B WILD-TYPE     49     80     76
D1044V2, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2B MUTATED       11      3      2      2
  ATAD2B WILD-TYPE    167    180     99     18
D1044V3, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1             11              167
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATAD2B MUTATED        7      1      5
  ATAD2B WILD-TYPE     80     79     95
D1044V4, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATAD2B MUTATED        2      6      9
  ATAD2B WILD-TYPE     87    154    129
D1044V5, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATAD2B MUTATED       10      5      2
  ATAD2B WILD-TYPE    172    128     70
D1044V6, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1             10              172
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2B MUTATED        1      2      9      6
  ATAD2B WILD-TYPE    111     94     83    180
D1044V7, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              9               83
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATAD2B MUTATED        2      0      6      1      4      1      4
  ATAD2B WILD-TYPE     58     50     43     39     59    124     95
D1044V8, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2B MUTATED        4      6      1      6
  ATAD2B WILD-TYPE    126     72     67    190
D1044V9, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              4              126
  CLUS_2              6               72
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATAD2B MUTATED        2      6      1      2      4      0      1      0
  ATAD2B WILD-TYPE     38     56     27     78     65     48     42     28
                  vv
clus               CLUS_9
  ATAD2B MUTATED        1
  ATAD2B WILD-TYPE     73
D1044V10, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2B MUTATED        2      1      1      3
  ATAD2B WILD-TYPE     31     30     26     16
D1044V11, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2B MUTATED        5      0      1      1
  ATAD2B WILD-TYPE     49     10     23     21
D1044V12, multiclass
        clus
vv       ATAD2B MUTATED ATAD2B WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1045) Variable = GPR126 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR126 MUTATED        4      0      1      3
  GPR126 WILD-TYPE     42     58     63     40
D1045V1, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR126 MUTATED        4      3      1
  GPR126 WILD-TYPE     47     80     76
D1045V2, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR126 MUTATED       15      0      3      1
  GPR126 WILD-TYPE    163    183     98     19
D1045V3, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              0              183
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR126 MUTATED        6      0      4
  GPR126 WILD-TYPE     81     80     96
D1045V4, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR126 MUTATED        5      6      6
  GPR126 WILD-TYPE     84    154    132
D1045V5, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR126 MUTATED        3      7      7
  GPR126 WILD-TYPE    179    126     65
D1045V6, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              7              126
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR126 MUTATED        1      8      1      9
  GPR126 WILD-TYPE    111     88     91    177
D1045V7, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              8               88
  CLUS_3              1               91
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR126 MUTATED        2      3      3      1      1      2      7
  GPR126 WILD-TYPE     58     47     46     39     62    123     92
D1045V8, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR126 MUTATED        5      2      1     11
  GPR126 WILD-TYPE    125     76     67    185
D1045V9, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR126 MUTATED        3      2      2      1      7      1      0      1
  GPR126 WILD-TYPE     37     60     26     79     62     47     43     27
                  vv
clus               CLUS_9
  GPR126 MUTATED        2
  GPR126 WILD-TYPE     72
D1045V10, multiclass
        clus
vv       GPR126 MUTATED GPR126 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR126 MUTATED        1      0      0      0
  GPR126 WILD-TYPE     32     31     27     19
D1045V11, multiclass
[1] "Remove cluster labels:" "GPR126 MUTATED"        
clus
  GPR126 MUTATED GPR126 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-G5-6641 
"GPR126 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR126 MUTATED        1      0      0      0
  GPR126 WILD-TYPE     53     10     24     22
D1045V12, multiclass
[1] "Remove cluster labels:" "GPR126 MUTATED"        
clus
  GPR126 MUTATED GPR126 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" "GPR126 WILD-TYPE" 
      TCGA-G5-6641 
"GPR126 WILD-TYPE" 

Clustering(1046) Variable = CHMP4C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4C MUTATED        0      0      0      1
  CHMP4C WILD-TYPE     46     58     64     42
D1046V1, multiclass
[1] "Remove cluster labels:" "CHMP4C MUTATED"        
clus
  CHMP4C MUTATED CHMP4C WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4C MUTATED        0      0      1
  CHMP4C WILD-TYPE     51     83     76
D1046V2, multiclass
[1] "Remove cluster labels:" "CHMP4C MUTATED"        
clus
  CHMP4C MUTATED CHMP4C WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CHMP4C WILD-TYPE" "CHMP4C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4C MUTATED        3      0      1      0
  CHMP4C WILD-TYPE    175    183    100     20
D1046V3, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4C MUTATED        1      0      2
  CHMP4C WILD-TYPE     86     80     98
D1046V4, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4C MUTATED        0      2      1
  CHMP4C WILD-TYPE     89    158    137
D1046V5, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4C MUTATED        1      2      0
  CHMP4C WILD-TYPE    181    131     72
D1046V6, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4C MUTATED        0      2      1      1
  CHMP4C WILD-TYPE    112     94     91    185
D1046V7, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHMP4C MUTATED        1      1      2      0      0      0      0
  CHMP4C WILD-TYPE     59     49     47     40     63    125     99
D1046V8, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4C MUTATED        3      0      0      1
  CHMP4C WILD-TYPE    127     78     68    195
D1046V9, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHMP4C MUTATED        0      1      1      0      2      0      0      0
  CHMP4C WILD-TYPE     40     61     27     80     67     48     43     28
                  vv
clus               CLUS_9
  CHMP4C MUTATED        0
  CHMP4C WILD-TYPE     74
D1046V10, multiclass
        clus
vv       CHMP4C MUTATED CHMP4C WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4C MUTATED        0      0      0      0
  CHMP4C WILD-TYPE     33     31     27     19
D1046V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4C MUTATED        0      0      0      0
  CHMP4C WILD-TYPE     54     10     24     22
D1046V12, multiclass

Clustering(1047) Variable = POLQ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLQ MUTATED        4      0      1      4
  POLQ WILD-TYPE     42     58     63     39
D1047V1, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLQ MUTATED        4      3      2
  POLQ WILD-TYPE     47     80     75
D1047V2, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            4             47
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLQ MUTATED       27      3      1      2
  POLQ WILD-TYPE    151    180    100     18
D1047V3, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1           27            151
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLQ MUTATED        8      3     13
  POLQ WILD-TYPE     79     77     87
D1047V4, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            8             79
  CLUS_2            3             77
  CLUS_3           13             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLQ MUTATED        1     11     16
  POLQ WILD-TYPE     88    149    122
D1047V5, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            1             88
  CLUS_2           11            149
  CLUS_3           16            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLQ MUTATED       12     13      3
  POLQ WILD-TYPE    170    120     69
D1047V6, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1           12            170
  CLUS_2           13            120
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLQ MUTATED        4     12      7     10
  POLQ WILD-TYPE    108     84     85    176
D1047V7, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            4            108
  CLUS_2           12             84
  CLUS_3            7             85
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POLQ MUTATED        4      4     11      2      2      2      8
  POLQ WILD-TYPE     56     46     38     38     61    123     91
D1047V8, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            4             56
  CLUS_2            4             46
  CLUS_3           11             38
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLQ MUTATED       14      5      1     13
  POLQ WILD-TYPE    116     73     67    183
D1047V9, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1           14            116
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  POLQ MUTATED        4      8      4      2      9      0      3      1      2
  POLQ WILD-TYPE     36     54     24     78     60     48     40     27     72
D1047V10, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            4             36
  CLUS_2            8             54
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5            9             60
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLQ MUTATED        2      2      0      4
  POLQ WILD-TYPE     31     29     27     15
D1047V11, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLQ MUTATED        5      1      2      0
  POLQ WILD-TYPE     49      9     22     22
D1047V12, multiclass
        clus
vv       POLQ MUTATED POLQ WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1048) Variable = CLGN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        1      0      0      1
  CLGN WILD-TYPE     45     58     64     42
D1048V1, multiclass
[1] "Remove cluster labels:" "CLGN MUTATED"          
clus
  CLGN MUTATED CLGN WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AY-4071 
"CLGN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        1      0      1
  CLGN WILD-TYPE     50     83     76
D1048V2, multiclass
[1] "Remove cluster labels:" "CLGN MUTATED"          
clus
  CLGN MUTATED CLGN WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AY-4071 
"CLGN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED       11      2      0      0
  CLGN WILD-TYPE    167    181    101     20
D1048V3, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1           11            167
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        4      1      6
  CLGN WILD-TYPE     83     79     94
D1048V4, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        2      4      6
  CLGN WILD-TYPE     87    156    132
D1048V5, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        6      5      1
  CLGN WILD-TYPE    176    128     71
D1048V6, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        2      5      3      3
  CLGN WILD-TYPE    110     91     89    183
D1048V7, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLGN MUTATED        2      3      3      0      2      0      3
  CLGN WILD-TYPE     58     47     46     40     61    125     96
D1048V8, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        5      2      0      6
  CLGN WILD-TYPE    125     76     68    190
D1048V9, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CLGN MUTATED        2      3      0      1      5      0      0      0      2
  CLGN WILD-TYPE     38     59     28     79     64     48     43     28     72
D1048V10, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        0      1      0      1
  CLGN WILD-TYPE     33     30     27     18
D1048V11, multiclass
[1] "Remove cluster labels:" "CLGN MUTATED"          
clus
  CLGN MUTATED CLGN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6682     TCGA-DC-6683 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        1      1      0      0
  CLGN WILD-TYPE     53      9     24     22
D1048V12, multiclass
[1] "Remove cluster labels:" "CLGN MUTATED"          
clus
  CLGN MUTATED CLGN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6682     TCGA-DC-6683 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" "CLGN WILD-TYPE" 

Clustering(1049) Variable = EML4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML4 MUTATED        3      0      0      0
  EML4 WILD-TYPE     43     58     64     43
D1049V1, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML4 MUTATED        2      1      0
  EML4 WILD-TYPE     49     82     77
D1049V2, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML4 MUTATED        7      2      1      0
  EML4 WILD-TYPE    171    181    100     20
D1049V3, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML4 MUTATED        3      2      2
  EML4 WILD-TYPE     84     78     98
D1049V4, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML4 MUTATED        1      2      4
  EML4 WILD-TYPE     88    158    134
D1049V5, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML4 MUTATED        4      2      1
  EML4 WILD-TYPE    178    131     71
D1049V6, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML4 MUTATED        3      2      2      3
  EML4 WILD-TYPE    109     94     90    183
D1049V7, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EML4 MUTATED        1      2      1      1      2      1      2
  EML4 WILD-TYPE     59     48     48     39     61    124     97
D1049V8, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML4 MUTATED        3      2      1      4
  EML4 WILD-TYPE    127     76     67    192
D1049V9, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EML4 MUTATED        2      2      1      1      3      0      0      0      1
  EML4 WILD-TYPE     38     60     27     79     66     48     43     28     73
D1049V10, multiclass
        clus
vv       EML4 MUTATED EML4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML4 MUTATED        0      1      0      0
  EML4 WILD-TYPE     33     30     27     19
D1049V11, multiclass
[1] "Remove cluster labels:" "EML4 MUTATED"          
clus
  EML4 MUTATED EML4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6460 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-G5-6641 
"EML4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML4 MUTATED        0      1      0      0
  EML4 WILD-TYPE     54      9     24     22
D1049V12, multiclass
[1] "Remove cluster labels:" "EML4 MUTATED"          
clus
  EML4 MUTATED EML4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6460 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" "EML4 WILD-TYPE" 
    TCGA-G5-6641 
"EML4 WILD-TYPE" 

Clustering(1050) Variable = AP1G2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G2 MUTATED        5      0      0      2
  AP1G2 WILD-TYPE     41     58     64     41
D1050V1, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G2 MUTATED        6      0      1
  AP1G2 WILD-TYPE     45     83     76
D1050V2, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G2 MUTATED       12      0      3      0
  AP1G2 WILD-TYPE    166    183     98     20
D1050V3, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             0             183
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G2 MUTATED        4      0      3
  AP1G2 WILD-TYPE     83     80     97
D1050V4, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G2 MUTATED        2      2      8
  AP1G2 WILD-TYPE     87    158    130
D1050V5, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G2 MUTATED        7      4      1
  AP1G2 WILD-TYPE    175    129     71
D1050V6, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G2 MUTATED        0      2      6      7
  AP1G2 WILD-TYPE    112     94     86    179
D1050V7, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             6              86
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP1G2 MUTATED        2      1      5      0      1      0      6
  AP1G2 WILD-TYPE     58     49     44     40     62    125     93
D1050V8, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G2 MUTATED        4      1      0      9
  AP1G2 WILD-TYPE    126     77     68    187
D1050V9, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AP1G2 MUTATED        0      3      1      2      6      0      0      2
  AP1G2 WILD-TYPE     40     59     27     78     63     48     43     26
                 vv
clus              CLUS_9
  AP1G2 MUTATED        0
  AP1G2 WILD-TYPE     74
D1050V10, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G2 MUTATED        2      0      0      2
  AP1G2 WILD-TYPE     31     31     27     17
D1050V11, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G2 MUTATED        3      0      1      0
  AP1G2 WILD-TYPE     51     10     23     22
D1050V12, multiclass
        clus
vv       AP1G2 MUTATED AP1G2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1051) Variable = CD3D MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3D MUTATED        0      0      0      1
  CD3D WILD-TYPE     46     58     64     42
D1051V1, multiclass
[1] "Remove cluster labels:" "CD3D MUTATED"          
clus
  CD3D MUTATED CD3D WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD3D MUTATED        1      0      0
  CD3D WILD-TYPE     50     83     77
D1051V2, multiclass
[1] "Remove cluster labels:" "CD3D MUTATED"          
clus
  CD3D MUTATED CD3D WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3D MUTATED        2      1      2      0
  CD3D WILD-TYPE    176    182     99     20
D1051V3, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            2            176
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD3D MUTATED        2      1      1
  CD3D WILD-TYPE     85     79     99
D1051V4, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD3D MUTATED        1      2      2
  CD3D WILD-TYPE     88    158    136
D1051V5, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD3D MUTATED        3      2      0
  CD3D WILD-TYPE    179    131     72
D1051V6, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3D MUTATED        1      2      1      1
  CD3D WILD-TYPE    111     94     91    185
D1051V7, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD3D MUTATED        1      0      1      1      1      0      1
  CD3D WILD-TYPE     59     50     48     39     62    125     98
D1051V8, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3D MUTATED        1      1      2      0
  CD3D WILD-TYPE    129     77     66    196
D1051V9, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CD3D MUTATED        0      2      0      0      0      0      2      0      0
  CD3D WILD-TYPE     40     60     28     80     69     48     41     28     74
D1051V10, multiclass
        clus
vv       CD3D MUTATED CD3D WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3D MUTATED        0      1      1      0
  CD3D WILD-TYPE     33     30     26     19
D1051V11, multiclass
[1] "Remove cluster labels:" "CD3D MUTATED"          
clus
  CD3D MUTATED CD3D WILD-TYPE 
             2            108 
    TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3D MUTATED        1      0      1      0
  CD3D WILD-TYPE     53     10     23     22
D1051V12, multiclass
[1] "Remove cluster labels:" "CD3D MUTATED"          
clus
  CD3D MUTATED CD3D WILD-TYPE 
             2            108 
    TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" "CD3D WILD-TYPE" 

Clustering(1052) Variable = CCDC69 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC69 MUTATED        0      0      0      1
  CCDC69 WILD-TYPE     46     58     64     42
D1052V1, multiclass
[1] "Remove cluster labels:" "CCDC69 MUTATED"        
clus
  CCDC69 MUTATED CCDC69 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC69 MUTATED        0      0      1
  CCDC69 WILD-TYPE     51     83     76
D1052V2, multiclass
[1] "Remove cluster labels:" "CCDC69 MUTATED"        
clus
  CCDC69 MUTATED CCDC69 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC69 MUTATED        3      0      2      0
  CCDC69 WILD-TYPE    175    183     99     20
D1052V3, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC69 MUTATED        1      1      2
  CCDC69 WILD-TYPE     86     79     98
D1052V4, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC69 MUTATED        0      3      2
  CCDC69 WILD-TYPE     89    157    136
D1052V5, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC69 MUTATED        2      2      1
  CCDC69 WILD-TYPE    180    131     71
D1052V6, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC69 MUTATED        1      2      1      1
  CCDC69 WILD-TYPE    111     94     91    185
D1052V7, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC69 MUTATED        1      1      0      0      2      0      1
  CCDC69 WILD-TYPE     59     49     49     40     61    125     98
D1052V8, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC69 MUTATED        1      1      1      2
  CCDC69 WILD-TYPE    129     77     67    194
D1052V9, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC69 MUTATED        0      1      0      0      2      0      2      0
  CCDC69 WILD-TYPE     40     61     28     80     67     48     41     28
                  vv
clus               CLUS_9
  CCDC69 MUTATED        0
  CCDC69 WILD-TYPE     74
D1052V10, multiclass
        clus
vv       CCDC69 MUTATED CCDC69 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC69 MUTATED        0      1      1      0
  CCDC69 WILD-TYPE     33     30     26     19
D1052V11, multiclass
[1] "Remove cluster labels:" "CCDC69 MUTATED"        
clus
  CCDC69 MUTATED CCDC69 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6683 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC69 MUTATED        0      1      0      1
  CCDC69 WILD-TYPE     54      9     24     21
D1052V12, multiclass
[1] "Remove cluster labels:" "CCDC69 MUTATED"        
clus
  CCDC69 MUTATED CCDC69 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6683 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" "CCDC69 WILD-TYPE" 

Clustering(1053) Variable = NOL9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        0      1      1      0
  NOL9 WILD-TYPE     46     57     63     43
D1053V1, multiclass
[1] "Remove cluster labels:" "NOL9 MUTATED"          
clus
  NOL9 MUTATED NOL9 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3984     TCGA-AA-3986 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02H 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AY-4071 
"NOL9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL9 MUTATED        0      2      0
  NOL9 WILD-TYPE     51     81     77
D1053V2, multiclass
[1] "Remove cluster labels:" "NOL9 MUTATED"          
clus
  NOL9 MUTATED NOL9 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3984     TCGA-AA-3986 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02H 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AY-4071 
"NOL9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        4      1      2      0
  NOL9 WILD-TYPE    174    182     99     20
D1053V3, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL9 MUTATED        0      0      5
  NOL9 WILD-TYPE     87     80     95
D1053V4, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL9 MUTATED        1      2      4
  NOL9 WILD-TYPE     88    158    134
D1053V5, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL9 MUTATED        5      1      1
  NOL9 WILD-TYPE    177    132     71
D1053V6, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        1      3      2      1
  NOL9 WILD-TYPE    111     93     90    185
D1053V7, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOL9 MUTATED        0      0      4      0      1      2      0
  NOL9 WILD-TYPE     60     50     45     40     62    123     99
D1053V8, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        3      1      1      2
  NOL9 WILD-TYPE    127     77     67    194
D1053V9, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NOL9 MUTATED        0      1      0      0      2      0      2      0      2
  NOL9 WILD-TYPE     40     61     28     80     67     48     41     28     72
D1053V10, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        0      1      0      1
  NOL9 WILD-TYPE     33     30     27     18
D1053V11, multiclass
[1] "Remove cluster labels:" "NOL9 MUTATED"          
clus
  NOL9 MUTATED NOL9 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        1      1      0      0
  NOL9 WILD-TYPE     53      9     24     22
D1053V12, multiclass
[1] "Remove cluster labels:" "NOL9 MUTATED"          
clus
  NOL9 MUTATED NOL9 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" "NOL9 WILD-TYPE" 

Clustering(1054) Variable = DSC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSC2 MUTATED        1      0      0      1
  DSC2 WILD-TYPE     45     58     64     42
D1054V1, multiclass
[1] "Remove cluster labels:" "DSC2 MUTATED"          
clus
  DSC2 MUTATED DSC2 WILD-TYPE 
             2            209 
    TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AY-4071 
"DSC2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSC2 MUTATED        2      0      0
  DSC2 WILD-TYPE     49     83     77
D1054V2, multiclass
[1] "Remove cluster labels:" "DSC2 MUTATED"          
clus
  DSC2 MUTATED DSC2 WILD-TYPE 
             2            209 
    TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" "DSC2 WILD-TYPE" 
    TCGA-AY-4071 
"DSC2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSC2 MUTATED       11      3      1      0
  DSC2 WILD-TYPE    167    180    100     20
D1054V3, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSC2 MUTATED        6      2      5
  DSC2 WILD-TYPE     81     78     95
D1054V4, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSC2 MUTATED        0      6      7
  DSC2 WILD-TYPE     89    154    131
D1054V5, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSC2 MUTATED        6      5      2
  DSC2 WILD-TYPE    176    128     70
D1054V6, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSC2 MUTATED        2      6      5      2
  DSC2 WILD-TYPE    110     90     87    184
D1054V7, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DSC2 MUTATED        2      3      4      1      2      0      3
  DSC2 WILD-TYPE     58     47     45     39     61    125     96
D1054V8, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSC2 MUTATED        6      3      2      3
  DSC2 WILD-TYPE    124     75     66    193
D1054V9, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DSC2 MUTATED        0      3      1      3      4      1      1      0      1
  DSC2 WILD-TYPE     40     59     27     77     65     47     42     28     73
D1054V10, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSC2 MUTATED        0      1      0      3
  DSC2 WILD-TYPE     33     30     27     16
D1054V11, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSC2 MUTATED        3      0      1      0
  DSC2 WILD-TYPE     51     10     23     22
D1054V12, multiclass
        clus
vv       DSC2 MUTATED DSC2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1055) Variable = AGTPBP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTPBP1 MUTATED        0      1      1      2
  AGTPBP1 WILD-TYPE     46     57     63     41
D1055V1, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGTPBP1 MUTATED        1      1      2
  AGTPBP1 WILD-TYPE     50     82     75
D1055V2, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTPBP1 MUTATED       12      5      4      0
  AGTPBP1 WILD-TYPE    166    178     97     20
D1055V3, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               5               178
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGTPBP1 MUTATED        9      2      5
  AGTPBP1 WILD-TYPE     78     78     95
D1055V4, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               2                78
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGTPBP1 MUTATED        5      8      6
  AGTPBP1 WILD-TYPE     84    152    132
D1055V5, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               8               152
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGTPBP1 MUTATED        9      9      1
  AGTPBP1 WILD-TYPE    173    124     71
D1055V6, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               9               124
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTPBP1 MUTATED        3      6      7      5
  AGTPBP1 WILD-TYPE    109     90     85    181
D1055V7, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               6                90
  CLUS_3               7                85
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGTPBP1 MUTATED        3      2      4      2      5      2      3
  AGTPBP1 WILD-TYPE     57     48     45     38     58    123     96
D1055V8, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               2                48
  CLUS_3               4                45
  CLUS_4               2                38
  CLUS_5               5                58
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTPBP1 MUTATED        6      6      1      8
  AGTPBP1 WILD-TYPE    124     72     67    188
D1055V9, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               6                72
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGTPBP1 MUTATED        2      5      0      4      5      1      1      0
  AGTPBP1 WILD-TYPE     38     57     28     76     64     47     42     28
                   vv
clus                CLUS_9
  AGTPBP1 MUTATED        3
  AGTPBP1 WILD-TYPE     71
D1055V10, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               0                28
  CLUS_4               4                76
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTPBP1 MUTATED        1      2      0      2
  AGTPBP1 WILD-TYPE     32     29     27     17
D1055V11, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTPBP1 MUTATED        4      0      1      0
  AGTPBP1 WILD-TYPE     50     10     23     22
D1055V12, multiclass
        clus
vv       AGTPBP1 MUTATED AGTPBP1 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1056) Variable = C18ORF19 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        1      0      0      3
  C18ORF19 WILD-TYPE     45     58     64     40
D1056V1, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C18ORF19 MUTATED        3      0      1
  C18ORF19 WILD-TYPE     48     83     76
D1056V2, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        6      2      1      0
  C18ORF19 WILD-TYPE    172    181    100     20
D1056V3, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C18ORF19 MUTATED        4      0      1
  C18ORF19 WILD-TYPE     83     80     99
D1056V4, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C18ORF19 MUTATED        1      4      3
  C18ORF19 WILD-TYPE     88    156    135
D1056V5, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C18ORF19 MUTATED        3      4      1
  C18ORF19 WILD-TYPE    179    129     71
D1056V6, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        0      2      3      4
  C18ORF19 WILD-TYPE    112     94     89    182
D1056V7, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                3                 89
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C18ORF19 MUTATED        1      1      2      0      2      0      3
  C18ORF19 WILD-TYPE     59     49     47     40     61    125     96
D1056V8, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        3      2      0      4
  C18ORF19 WILD-TYPE    127     76     68    192
D1056V9, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C18ORF19 MUTATED        1      2      0      0      5      0      1      0
  C18ORF19 WILD-TYPE     39     60     28     80     64     48     42     28
                    vv
clus                 CLUS_9
  C18ORF19 MUTATED        0
  C18ORF19 WILD-TYPE     74
D1056V10, multiclass
        clus
vv       C18ORF19 MUTATED C18ORF19 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        0      1      0      1
  C18ORF19 WILD-TYPE     33     30     27     18
D1056V11, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6781 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6901 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-4110         TCGA-AF-6655 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3731         TCGA-AG-3732 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AY-6196         TCGA-AZ-4323 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-5403         TCGA-AZ-6598 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C18ORF19 MUTATED        1      0      1      0
  C18ORF19 WILD-TYPE     53     10     23     22
D1056V12, multiclass
[1] "Remove cluster labels:" "C18ORF19 MUTATED"      
clus
  C18ORF19 MUTATED C18ORF19 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6781 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6901 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-4110         TCGA-AF-6655 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3731         TCGA-AG-3732 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AY-6196         TCGA-AZ-4323 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-5403         TCGA-AZ-6598 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" "C18ORF19 WILD-TYPE" 

Clustering(1057) Variable = AWAT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AWAT1 MUTATED        2      0      0      2
  AWAT1 WILD-TYPE     44     58     64     41
D1057V1, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AWAT1 MUTATED        2      0      2
  AWAT1 WILD-TYPE     49     83     75
D1057V2, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AWAT1 MUTATED        7      2      0      0
  AWAT1 WILD-TYPE    171    181    101     20
D1057V3, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AWAT1 MUTATED        2      1      2
  AWAT1 WILD-TYPE     85     79     98
D1057V4, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AWAT1 MUTATED        0      4      4
  AWAT1 WILD-TYPE     89    156    134
D1057V5, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AWAT1 MUTATED        3      4      1
  AWAT1 WILD-TYPE    179    129     71
D1057V6, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AWAT1 MUTATED        2      2      2      3
  AWAT1 WILD-TYPE    110     94     90    183
D1057V7, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AWAT1 MUTATED        4      0      1      0      1      0      3
  AWAT1 WILD-TYPE     56     50     48     40     62    125     96
D1057V8, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AWAT1 MUTATED        3      1      0      5
  AWAT1 WILD-TYPE    127     77     68    191
D1057V9, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AWAT1 MUTATED        0      2      0      1      3      1      0      1
  AWAT1 WILD-TYPE     40     60     28     79     66     47     43     27
                 vv
clus              CLUS_9
  AWAT1 MUTATED        1
  AWAT1 WILD-TYPE     73
D1057V10, multiclass
        clus
vv       AWAT1 MUTATED AWAT1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AWAT1 MUTATED        0      0      0      1
  AWAT1 WILD-TYPE     33     31     27     18
D1057V11, multiclass
[1] "Remove cluster labels:" "AWAT1 MUTATED"         
clus
  AWAT1 MUTATED AWAT1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-G5-6641 
"AWAT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AWAT1 MUTATED        1      0      0      0
  AWAT1 WILD-TYPE     53     10     24     22
D1057V12, multiclass
[1] "Remove cluster labels:" "AWAT1 MUTATED"         
clus
  AWAT1 MUTATED AWAT1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" "AWAT1 WILD-TYPE" 
     TCGA-G5-6641 
"AWAT1 WILD-TYPE" 

Clustering(1058) Variable = YSK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YSK4 MUTATED        4      1      0      5
  YSK4 WILD-TYPE     42     57     64     38
D1058V1, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YSK4 MUTATED        6      2      2
  YSK4 WILD-TYPE     45     81     75
D1058V2, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YSK4 MUTATED       21      8      1      0
  YSK4 WILD-TYPE    157    175    100     20
D1058V3, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1           21            157
  CLUS_2            8            175
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YSK4 MUTATED        6      5      9
  YSK4 WILD-TYPE     81     75     91
D1058V4, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            5             75
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YSK4 MUTATED        3     12     11
  YSK4 WILD-TYPE     86    148    127
D1058V5, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           12            148
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YSK4 MUTATED       12      9      5
  YSK4 WILD-TYPE    170    124     67
D1058V6, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            9            124
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YSK4 MUTATED        6      6      7     11
  YSK4 WILD-TYPE    106     90     85    175
D1058V7, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            6             90
  CLUS_3            7             85
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YSK4 MUTATED        5      5      6      2      2      2      8
  YSK4 WILD-TYPE     55     45     43     38     61    123     91
D1058V8, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            5             45
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YSK4 MUTATED       10      4      4     11
  YSK4 WILD-TYPE    120     74     64    185
D1058V9, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            4             74
  CLUS_3            4             64
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  YSK4 MUTATED        6      4      2      1      7      0      6      1      2
  YSK4 WILD-TYPE     34     58     26     79     62     48     37     27     72
D1058V10, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            6             37
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YSK4 MUTATED        0      0      1      4
  YSK4 WILD-TYPE     33     31     26     15
D1058V11, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YSK4 MUTATED        3      0      1      1
  YSK4 WILD-TYPE     51     10     23     21
D1058V12, multiclass
        clus
vv       YSK4 MUTATED YSK4 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1059) Variable = GSTA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTA5 MUTATED        1      0      0      1
  GSTA5 WILD-TYPE     45     58     64     42
D1059V1, multiclass
[1] "Remove cluster labels:" "GSTA5 MUTATED"         
clus
  GSTA5 MUTATED GSTA5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AY-4071 
"GSTA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTA5 MUTATED        1      0      1
  GSTA5 WILD-TYPE     50     83     76
D1059V2, multiclass
[1] "Remove cluster labels:" "GSTA5 MUTATED"         
clus
  GSTA5 MUTATED GSTA5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AY-4071 
"GSTA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTA5 MUTATED        4      3      1      0
  GSTA5 WILD-TYPE    174    180    100     20
D1059V3, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTA5 MUTATED        3      2      1
  GSTA5 WILD-TYPE     84     78     99
D1059V4, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTA5 MUTATED        1      1      4
  GSTA5 WILD-TYPE     88    159    134
D1059V5, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTA5 MUTATED        3      1      2
  GSTA5 WILD-TYPE    179    132     70
D1059V6, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTA5 MUTATED        2      1      3      2
  GSTA5 WILD-TYPE    110     95     89    184
D1059V7, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSTA5 MUTATED        0      1      0      1      4      0      2
  GSTA5 WILD-TYPE     60     49     49     39     59    125     97
D1059V8, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTA5 MUTATED        2      3      0      3
  GSTA5 WILD-TYPE    128     75     68    193
D1059V9, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GSTA5 MUTATED        1      3      1      1      1      0      0      0
  GSTA5 WILD-TYPE     39     59     27     79     68     48     43     28
                 vv
clus              CLUS_9
  GSTA5 MUTATED        1
  GSTA5 WILD-TYPE     73
D1059V10, multiclass
        clus
vv       GSTA5 MUTATED GSTA5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTA5 MUTATED        0      2      0      0
  GSTA5 WILD-TYPE     33     29     27     19
D1059V11, multiclass
[1] "Remove cluster labels:" "GSTA5 MUTATED"         
clus
  GSTA5 MUTATED GSTA5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6536 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTA5 MUTATED        1      1      0      0
  GSTA5 WILD-TYPE     53      9     24     22
D1059V12, multiclass
[1] "Remove cluster labels:" "GSTA5 MUTATED"         
clus
  GSTA5 MUTATED GSTA5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6536 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" "GSTA5 WILD-TYPE" 

Clustering(1060) Variable = PCOLCE2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        2      1      1      3
  PCOLCE2 WILD-TYPE     44     57     63     40
D1060V1, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCOLCE2 MUTATED        3      3      1
  PCOLCE2 WILD-TYPE     48     80     76
D1060V2, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        8      4      2      1
  PCOLCE2 WILD-TYPE    170    179     99     19
D1060V3, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               4               179
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCOLCE2 MUTATED        4      2      2
  PCOLCE2 WILD-TYPE     83     78     98
D1060V4, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCOLCE2 MUTATED        2      7      4
  PCOLCE2 WILD-TYPE     87    153    134
D1060V5, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               7               153
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCOLCE2 MUTATED        6      5      2
  PCOLCE2 WILD-TYPE    176    128     70
D1060V6, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        4      3      2      6
  PCOLCE2 WILD-TYPE    108     93     90    180
D1060V7, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCOLCE2 MUTATED        1      1      3      1      3      2      4
  PCOLCE2 WILD-TYPE     59     49     46     39     60    123     95
D1060V8, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               2               123
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        5      1      2      6
  PCOLCE2 WILD-TYPE    125     77     66    190
D1060V9, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               1                77
  CLUS_3               2                66
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCOLCE2 MUTATED        1      3      1      1      5      1      1      0
  PCOLCE2 WILD-TYPE     39     59     27     79     64     47     42     28
                   vv
clus                CLUS_9
  PCOLCE2 MUTATED        1
  PCOLCE2 WILD-TYPE     73
D1060V10, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        0      0      2      1
  PCOLCE2 WILD-TYPE     33     31     25     18
D1060V11, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               2                25
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCOLCE2 MUTATED        0      1      1      1
  PCOLCE2 WILD-TYPE     54      9     23     21
D1060V12, multiclass
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  CLUS_1               0                54
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1061) Variable = BUB1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        3      0      0      2
  BUB1B WILD-TYPE     43     58     64     41
D1061V1, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUB1B MUTATED        1      1      3
  BUB1B WILD-TYPE     50     82     74
D1061V2, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        8      2      0      1
  BUB1B WILD-TYPE    170    181    101     19
D1061V3, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUB1B MUTATED        3      1      2
  BUB1B WILD-TYPE     84     79     98
D1061V4, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUB1B MUTATED        1      2      5
  BUB1B WILD-TYPE     88    158    133
D1061V5, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUB1B MUTATED        5      3      0
  BUB1B WILD-TYPE    177    130     72
D1061V6, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        2      3      1      5
  BUB1B WILD-TYPE    110     93     91    181
D1061V7, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BUB1B MUTATED        2      1      2      1      1      1      3
  BUB1B WILD-TYPE     58     49     47     39     62    124     96
D1061V8, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        3      1      1      6
  BUB1B WILD-TYPE    127     77     67    190
D1061V9, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BUB1B MUTATED        0      1      1      1      4      0      2      1
  BUB1B WILD-TYPE     40     61     27     79     65     48     41     27
                 vv
clus              CLUS_9
  BUB1B MUTATED        1
  BUB1B WILD-TYPE     73
D1061V10, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        1      1      0      1
  BUB1B WILD-TYPE     32     30     27     18
D1061V11, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        3      0      0      0
  BUB1B WILD-TYPE     51     10     24     22
D1061V12, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1062) Variable = MC3R MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        0      0      0      1
  MC3R WILD-TYPE     46     58     64     42
D1062V1, multiclass
[1] "Remove cluster labels:" "MC3R MUTATED"          
clus
  MC3R MUTATED MC3R WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        0      1      0
  MC3R WILD-TYPE     51     82     77
D1062V2, multiclass
[1] "Remove cluster labels:" "MC3R MUTATED"          
clus
  MC3R MUTATED MC3R WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" "MC3R WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MC3R WILD-TYPE" "MC3R WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        4      7      2      1
  MC3R WILD-TYPE    174    176     99     19
D1062V3, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            4            174
  CLUS_2            7            176
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        4      7      2
  MC3R WILD-TYPE     83     73     98
D1062V4, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            4             83
  CLUS_2            7             73
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        1      6      7
  MC3R WILD-TYPE     88    154    131
D1062V5, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MC3R MUTATED        8      6      0
  MC3R WILD-TYPE    174    127     72
D1062V6, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            8            174
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        7      4      2      1
  MC3R WILD-TYPE    105     92     90    185
D1062V7, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            7            105
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MC3R MUTATED        4      3      3      1      2      0      1
  MC3R WILD-TYPE     56     47     46     39     61    125     98
D1062V8, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            4             56
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        6      4      3      1
  MC3R WILD-TYPE    124     74     65    195
D1062V9, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            6            124
  CLUS_2            4             74
  CLUS_3            3             65
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MC3R MUTATED        2      2      4      0      1      2      3      0      0
  MC3R WILD-TYPE     38     60     24     80     68     46     40     28     74
D1062V10, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            4             24
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            2             46
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        3      1      1      0
  MC3R WILD-TYPE     30     30     26     19
D1062V11, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MC3R MUTATED        2      1      1      1
  MC3R WILD-TYPE     52      9     23     21
D1062V12, multiclass
        clus
vv       MC3R MUTATED MC3R WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1063) Variable = DNASE1L3 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNASE1L3 MUTATED        1      1      0      0
  DNASE1L3 WILD-TYPE     45     57     64     43
D1063V1, multiclass
[1] "Remove cluster labels:" "DNASE1L3 MUTATED"      
clus
  DNASE1L3 MUTATED DNASE1L3 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AF-2689         TCGA-AF-2691 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DNASE1L3 MUTATED        1      1      0
  DNASE1L3 WILD-TYPE     50     82     77
D1063V2, multiclass
[1] "Remove cluster labels:" "DNASE1L3 MUTATED"      
clus
  DNASE1L3 MUTATED DNASE1L3 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AF-2689         TCGA-AF-2691 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNASE1L3 MUTATED        4      1      3      0
  DNASE1L3 WILD-TYPE    174    182     98     20
D1063V3, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                1                182
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DNASE1L3 MUTATED        4      1      1
  DNASE1L3 WILD-TYPE     83     79     99
D1063V4, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                1                 79
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DNASE1L3 MUTATED        2      1      2
  DNASE1L3 WILD-TYPE     87    159    136
D1063V5, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                1                159
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DNASE1L3 MUTATED        4      1      0
  DNASE1L3 WILD-TYPE    178    132     72
D1063V6, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                1                132
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNASE1L3 MUTATED        2      1      2      3
  DNASE1L3 WILD-TYPE    110     95     90    183
D1063V7, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNASE1L3 MUTATED        0      0      2      1      1      2      2
  DNASE1L3 WILD-TYPE     60     50     47     39     62    123     97
D1063V8, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                2                 47
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                2                123
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNASE1L3 MUTATED        1      4      0      2
  DNASE1L3 WILD-TYPE    129     74     68    194
D1063V9, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                4                 74
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNASE1L3 MUTATED        0      3      0      0      1      0      0      2
  DNASE1L3 WILD-TYPE     40     59     28     80     68     48     43     26
                    vv
clus                 CLUS_9
  DNASE1L3 MUTATED        1
  DNASE1L3 WILD-TYPE     73
D1063V10, multiclass
        clus
vv       DNASE1L3 MUTATED DNASE1L3 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                2                 26
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNASE1L3 MUTATED        0      1      0      1
  DNASE1L3 WILD-TYPE     33     30     27     18
D1063V11, multiclass
[1] "Remove cluster labels:" "DNASE1L3 MUTATED"      
clus
  DNASE1L3 MUTATED DNASE1L3 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6603 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNASE1L3 MUTATED        2      0      0      0
  DNASE1L3 WILD-TYPE     52     10     24     22
D1063V12, multiclass
[1] "Remove cluster labels:" "DNASE1L3 MUTATED"      
clus
  DNASE1L3 MUTATED DNASE1L3 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6603 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" "DNASE1L3 WILD-TYPE" 

Clustering(1064) Variable = FAM98B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98B MUTATED        1      0      0      1
  FAM98B WILD-TYPE     45     58     64     42
D1064V1, multiclass
[1] "Remove cluster labels:" "FAM98B MUTATED"        
clus
  FAM98B MUTATED FAM98B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AY-4071 
"FAM98B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM98B MUTATED        1      0      1
  FAM98B WILD-TYPE     50     83     76
D1064V2, multiclass
[1] "Remove cluster labels:" "FAM98B MUTATED"        
clus
  FAM98B MUTATED FAM98B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AY-4071 
"FAM98B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98B MUTATED        4      0      1      0
  FAM98B WILD-TYPE    174    183    100     20
D1064V3, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM98B MUTATED        1      1      1
  FAM98B WILD-TYPE     86     79     99
D1064V4, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM98B MUTATED        0      2      1
  FAM98B WILD-TYPE     89    158    137
D1064V5, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM98B MUTATED        1      2      0
  FAM98B WILD-TYPE    181    131     72
D1064V6, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98B MUTATED        0      1      2      2
  FAM98B WILD-TYPE    112     95     90    184
D1064V7, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM98B MUTATED        1      0      1      1      1      0      1
  FAM98B WILD-TYPE     59     50     48     39     62    125     98
D1064V8, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98B MUTATED        2      1      0      2
  FAM98B WILD-TYPE    128     77     68    194
D1064V9, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM98B MUTATED        2      1      0      0      2      0      0      0
  FAM98B WILD-TYPE     38     61     28     80     67     48     43     28
                  vv
clus               CLUS_9
  FAM98B MUTATED        0
  FAM98B WILD-TYPE     74
D1064V10, multiclass
        clus
vv       FAM98B MUTATED FAM98B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98B MUTATED        1      0      0      0
  FAM98B WILD-TYPE     32     31     27     19
D1064V11, multiclass
[1] "Remove cluster labels:" "FAM98B MUTATED"        
clus
  FAM98B MUTATED FAM98B WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-G5-6641 
"FAM98B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98B MUTATED        1      0      0      0
  FAM98B WILD-TYPE     53     10     24     22
D1064V12, multiclass
[1] "Remove cluster labels:" "FAM98B MUTATED"        
clus
  FAM98B MUTATED FAM98B WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" "FAM98B WILD-TYPE" 
      TCGA-G5-6641 
"FAM98B WILD-TYPE" 

Clustering(1065) Variable = DCTN5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN5 MUTATED        1      0      0      0
  DCTN5 WILD-TYPE     45     58     64     43
D1065V1, multiclass
[1] "Remove cluster labels:" "DCTN5 MUTATED"         
clus
  DCTN5 MUTATED DCTN5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN5 MUTATED        1      0      0
  DCTN5 WILD-TYPE     50     83     77
D1065V2, multiclass
[1] "Remove cluster labels:" "DCTN5 MUTATED"         
clus
  DCTN5 MUTATED DCTN5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN5 MUTATED        4      2      0      0
  DCTN5 WILD-TYPE    174    181    101     20
D1065V3, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN5 MUTATED        1      1      4
  DCTN5 WILD-TYPE     86     79     96
D1065V4, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN5 MUTATED        1      3      2
  DCTN5 WILD-TYPE     88    157    136
D1065V5, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN5 MUTATED        2      2      2
  DCTN5 WILD-TYPE    180    131     70
D1065V6, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN5 MUTATED        2      3      0      1
  DCTN5 WILD-TYPE    110     93     92    185
D1065V7, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCTN5 MUTATED        0      1      2      1      1      0      1
  DCTN5 WILD-TYPE     60     49     47     39     62    125     98
D1065V8, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN5 MUTATED        4      0      0      2
  DCTN5 WILD-TYPE    126     78     68    194
D1065V9, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCTN5 MUTATED        1      0      0      2      2      1      0      0
  DCTN5 WILD-TYPE     39     62     28     78     67     47     43     28
                 vv
clus              CLUS_9
  DCTN5 MUTATED        0
  DCTN5 WILD-TYPE     74
D1065V10, multiclass
        clus
vv       DCTN5 MUTATED DCTN5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN5 MUTATED        0      0      0      1
  DCTN5 WILD-TYPE     33     31     27     18
D1065V11, multiclass
[1] "Remove cluster labels:" "DCTN5 MUTATED"         
clus
  DCTN5 MUTATED DCTN5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-G5-6641 
"DCTN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN5 MUTATED        0      0      1      0
  DCTN5 WILD-TYPE     54     10     23     22
D1065V12, multiclass
[1] "Remove cluster labels:" "DCTN5 MUTATED"         
clus
  DCTN5 MUTATED DCTN5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" "DCTN5 WILD-TYPE" 
     TCGA-G5-6641 
"DCTN5 WILD-TYPE" 

Clustering(1066) Variable = SLC11A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC11A2 MUTATED        3      0      0      1
  SLC11A2 WILD-TYPE     43     58     64     42
D1066V1, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC11A2 MUTATED        2      1      1
  SLC11A2 WILD-TYPE     49     82     76
D1066V2, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC11A2 MUTATED        9      0      0      0
  SLC11A2 WILD-TYPE    169    183    101     20
D1066V3, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC11A2 MUTATED        2      0      3
  SLC11A2 WILD-TYPE     85     80     97
D1066V4, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC11A2 MUTATED        0      1      4
  SLC11A2 WILD-TYPE     89    159    134
D1066V5, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC11A2 MUTATED        3      2      0
  SLC11A2 WILD-TYPE    179    131     72
D1066V6, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC11A2 MUTATED        0      2      3      4
  SLC11A2 WILD-TYPE    112     94     89    182
D1066V7, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC11A2 MUTATED        1      0      5      0      0      1      2
  SLC11A2 WILD-TYPE     59     50     44     40     63    124     97
D1066V8, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC11A2 MUTATED        2      3      0      4
  SLC11A2 WILD-TYPE    128     75     68    192
D1066V9, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC11A2 MUTATED        0      2      0      2      3      0      1      1
  SLC11A2 WILD-TYPE     40     60     28     78     66     48     42     27
                   vv
clus                CLUS_9
  SLC11A2 MUTATED        0
  SLC11A2 WILD-TYPE     74
D1066V10, multiclass
        clus
vv       SLC11A2 MUTATED SLC11A2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC11A2 MUTATED        1      0      0      0
  SLC11A2 WILD-TYPE     32     31     27     19
D1066V11, multiclass
[1] "Remove cluster labels:" "SLC11A2 MUTATED"       
clus
  SLC11A2 MUTATED SLC11A2 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-G5-6641 
"SLC11A2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC11A2 MUTATED        1      0      0      0
  SLC11A2 WILD-TYPE     53     10     24     22
D1066V12, multiclass
[1] "Remove cluster labels:" "SLC11A2 MUTATED"       
clus
  SLC11A2 MUTATED SLC11A2 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" "SLC11A2 WILD-TYPE" 
       TCGA-G5-6641 
"SLC11A2 WILD-TYPE" 

Clustering(1067) Variable = SERPINB7 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        0      0      0      2
  SERPINB7 WILD-TYPE     46     58     64     41
D1067V1, multiclass
[1] "Remove cluster labels:" "SERPINB7 MUTATED"      
clus
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB7 MUTATED        1      1      0
  SERPINB7 WILD-TYPE     50     82     77
D1067V2, multiclass
[1] "Remove cluster labels:" "SERPINB7 MUTATED"      
clus
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        6      2      0      0
  SERPINB7 WILD-TYPE    172    181    101     20
D1067V3, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                2                181
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB7 MUTATED        3      0      3
  SERPINB7 WILD-TYPE     84     80     97
D1067V4, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB7 MUTATED        0      6      2
  SERPINB7 WILD-TYPE     89    154    136
D1067V5, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                6                154
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB7 MUTATED        2      5      1
  SERPINB7 WILD-TYPE    180    128     71
D1067V6, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                5                128
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        1      3      2      2
  SERPINB7 WILD-TYPE    111     93     90    184
D1067V7, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                3                 93
  CLUS_3                2                 90
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERPINB7 MUTATED        0      1      3      0      2      0      2
  SERPINB7 WILD-TYPE     60     49     46     40     61    125     97
D1067V8, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        3      2      0      3
  SERPINB7 WILD-TYPE    127     76     68    193
D1067V9, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SERPINB7 MUTATED        1      1      1      0      2      1      1      0
  SERPINB7 WILD-TYPE     39     61     27     80     67     47     42     28
                    vv
clus                 CLUS_9
  SERPINB7 MUTATED        1
  SERPINB7 WILD-TYPE     73
D1067V10, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                2                 67
  CLUS_6                1                 47
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        0      2      0      2
  SERPINB7 WILD-TYPE     33     29     27     17
D1067V11, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                2                 29
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        2      0      1      1
  SERPINB7 WILD-TYPE     52     10     23     21
D1067V12, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1068) Variable = PTPRJ MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        3      0      0      1
  PTPRJ WILD-TYPE     43     58     64     42
D1068V1, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED        3      0      1
  PTPRJ WILD-TYPE     48     83     76
D1068V2, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED       11      5      1      0
  PTPRJ WILD-TYPE    167    178    100     20
D1068V3, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1            11             167
  CLUS_2             5             178
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED        3      4      6
  PTPRJ WILD-TYPE     84     76     94
D1068V4, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4              76
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED        2      6      6
  PTPRJ WILD-TYPE     87    154    132
D1068V5, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED       10      4      0
  PTPRJ WILD-TYPE    172    129     72
D1068V6, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        4      4      6      4
  PTPRJ WILD-TYPE    108     92     86    182
D1068V7, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             6              86
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRJ MUTATED        3      3      4      0      5      0      3
  PTPRJ WILD-TYPE     57     47     45     40     58    125     96
D1068V8, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             5              58
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        8      3      1      6
  PTPRJ WILD-TYPE    122     75     67    190
D1068V9, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRJ MUTATED        2      6      0      3      5      0      1      1
  PTPRJ WILD-TYPE     38     56     28     77     64     48     42     27
                 vv
clus              CLUS_9
  PTPRJ MUTATED        0
  PTPRJ WILD-TYPE     74
D1068V10, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        2      2      1      1
  PTPRJ WILD-TYPE     31     29     26     18
D1068V11, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        4      0      1      1
  PTPRJ WILD-TYPE     50     10     23     21
D1068V12, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1069) Variable = WDR5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      0      0      1
  WDR5 WILD-TYPE     46     58     64     42
D1069V1, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        1      0      0
  WDR5 WILD-TYPE     50     83     77
D1069V2, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        4      2      0      0
  WDR5 WILD-TYPE    174    181    101     20
D1069V3, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        3      0      2
  WDR5 WILD-TYPE     84     80     98
D1069V4, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        2      2      2
  WDR5 WILD-TYPE     87    158    136
D1069V5, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        3      1      2
  WDR5 WILD-TYPE    179    132     70
D1069V6, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        1      2      2      1
  WDR5 WILD-TYPE    111     94     90    185
D1069V7, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR5 MUTATED        1      0      3      0      1      0      1
  WDR5 WILD-TYPE     59     50     46     40     62    125     98
D1069V8, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        4      1      0      1
  WDR5 WILD-TYPE    126     77     68    195
D1069V9, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WDR5 MUTATED        0      2      0      0      2      1      1      0      0
  WDR5 WILD-TYPE     40     60     28     80     67     47     42     28     74
D1069V10, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      1      0      1
  WDR5 WILD-TYPE     33     30     27     18
D1069V11, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F5-6464 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        1      0      1      0
  WDR5 WILD-TYPE     53     10     23     22
D1069V12, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F5-6464 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 

Clustering(1070) Variable = MAP3K4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K4 MUTATED        7      1      1      4
  MAP3K4 WILD-TYPE     39     57     63     39
D1070V1, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K4 MUTATED        8      3      2
  MAP3K4 WILD-TYPE     43     80     75
D1070V2, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              8               43
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K4 MUTATED       31      4      3      0
  MAP3K4 WILD-TYPE    147    179     98     20
D1070V3, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1             31              147
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K4 MUTATED        9      4      9
  MAP3K4 WILD-TYPE     78     76     91
D1070V4, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              4               76
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K4 MUTATED        9     11     12
  MAP3K4 WILD-TYPE     80    149    126
D1070V5, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              9               80
  CLUS_2             11              149
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K4 MUTATED       13     12      7
  MAP3K4 WILD-TYPE    169    121     65
D1070V6, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1             13              169
  CLUS_2             12              121
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K4 MUTATED        5      8     10     16
  MAP3K4 WILD-TYPE    107     88     82    170
D1070V7, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              8               88
  CLUS_3             10               82
  CLUS_4             16              170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP3K4 MUTATED        3      3     10      1      4      4     14
  MAP3K4 WILD-TYPE     57     47     39     39     59    121     85
D1070V8, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3             10               39
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              4              121
  CLUS_7             14               85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K4 MUTATED        8      7      3     20
  MAP3K4 WILD-TYPE    122     71     65    176
D1070V9, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              7               71
  CLUS_3              3               65
  CLUS_4             20              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP3K4 MUTATED        3      5      1      6     14      1      3      2
  MAP3K4 WILD-TYPE     37     57     27     74     55     47     40     26
                  vv
clus               CLUS_9
  MAP3K4 MUTATED        3
  MAP3K4 WILD-TYPE     71
D1070V10, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              6               74
  CLUS_5             14               55
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K4 MUTATED        1      2      0      4
  MAP3K4 WILD-TYPE     32     29     27     15
D1070V11, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K4 MUTATED        5      0      2      0
  MAP3K4 WILD-TYPE     49     10     22     22
D1070V12, multiclass
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1071) Variable = KRTAP5-3 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        1      0      0      0
  KRTAP5-3 WILD-TYPE     45     58     64     43
D1071V1, multiclass
[1] "Remove cluster labels:" "KRTAP5-3 MUTATED"      
clus
  KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3968         TCGA-AA-3971 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-3 MUTATED        1      0      0
  KRTAP5-3 WILD-TYPE     50     83     77
D1071V2, multiclass
[1] "Remove cluster labels:" "KRTAP5-3 MUTATED"      
clus
  KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3968         TCGA-AA-3971 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" "KRTAP5-3 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        1      1      2      0
  KRTAP5-3 WILD-TYPE    177    182     99     20
D1071V3, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                177
  CLUS_2                1                182
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-3 MUTATED        1      1      1
  KRTAP5-3 WILD-TYPE     86     79     99
D1071V4, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                1                 79
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-3 MUTATED        1      0      2
  KRTAP5-3 WILD-TYPE     88    160    136
D1071V5, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                0                160
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-3 MUTATED        3      0      0
  KRTAP5-3 WILD-TYPE    179    133     72
D1071V6, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                0                133
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        1      0      2      1
  KRTAP5-3 WILD-TYPE    111     96     90    185
D1071V7, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                0                 96
  CLUS_3                2                 90
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP5-3 MUTATED        0      0      0      0      3      0      1
  KRTAP5-3 WILD-TYPE     60     50     49     40     60    125     98
D1071V8, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                0                 49
  CLUS_4                0                 40
  CLUS_5                3                 60
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        1      2      0      1
  KRTAP5-3 WILD-TYPE    129     76     68    195
D1071V9, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRTAP5-3 MUTATED        0      2      1      0      1      0      0      0
  KRTAP5-3 WILD-TYPE     40     60     27     80     68     48     43     28
                    vv
clus                 CLUS_9
  KRTAP5-3 MUTATED        0
  KRTAP5-3 WILD-TYPE     74
D1071V10, multiclass
        clus
vv       KRTAP5-3 MUTATED KRTAP5-3 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        0      0      0      0
  KRTAP5-3 WILD-TYPE     33     31     27     19
D1071V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-3 MUTATED        0      0      0      0
  KRTAP5-3 WILD-TYPE     54     10     24     22
D1071V12, multiclass

Clustering(1072) Variable = CPS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPS1 MUTATED        6      1      1      4
  CPS1 WILD-TYPE     40     57     63     39
D1072V1, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPS1 MUTATED        5      4      3
  CPS1 WILD-TYPE     46     79     74
D1072V2, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            4             79
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPS1 MUTATED       20      8      4      1
  CPS1 WILD-TYPE    158    175     97     19
D1072V3, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1           20            158
  CLUS_2            8            175
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPS1 MUTATED        9      5      8
  CPS1 WILD-TYPE     78     75     92
D1072V4, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            5             75
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPS1 MUTATED        1     12     16
  CPS1 WILD-TYPE     88    148    122
D1072V5, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2           12            148
  CLUS_3           16            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPS1 MUTATED       13     12      4
  CPS1 WILD-TYPE    169    121     68
D1072V6, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1           13            169
  CLUS_2           12            121
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPS1 MUTATED        6     11      6     11
  CPS1 WILD-TYPE    106     85     86    175
D1072V7, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            6            106
  CLUS_2           11             85
  CLUS_3            6             86
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPS1 MUTATED        5      3      8      3      3      2     10
  CPS1 WILD-TYPE     55     47     41     37     60    123     89
D1072V8, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            3             47
  CLUS_3            8             41
  CLUS_4            3             37
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPS1 MUTATED       13      4      4     12
  CPS1 WILD-TYPE    117     74     64    184
D1072V9, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            4             74
  CLUS_3            4             64
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CPS1 MUTATED        3      4      5      4      9      1      4      1      2
  CPS1 WILD-TYPE     37     58     23     76     60     47     39     27     72
D1072V10, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            5             23
  CLUS_4            4             76
  CLUS_5            9             60
  CLUS_6            1             47
  CLUS_7            4             39
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPS1 MUTATED        2      0      1      3
  CPS1 WILD-TYPE     31     31     26     16
D1072V11, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPS1 MUTATED        3      0      2      1
  CPS1 WILD-TYPE     51     10     22     21
D1072V12, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1073) Variable = MDN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDN1 MUTATED       13      1      3      7
  MDN1 WILD-TYPE     33     57     61     36
D1073V1, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1           13             33
  CLUS_2            1             57
  CLUS_3            3             61
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDN1 MUTATED       16      4      4
  MDN1 WILD-TYPE     35     79     73
D1073V2, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1           16             35
  CLUS_2            4             79
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDN1 MUTATED       41      9      5      1
  MDN1 WILD-TYPE    137    174     96     19
D1073V3, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1           41            137
  CLUS_2            9            174
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDN1 MUTATED       11      5     16
  MDN1 WILD-TYPE     76     75     84
D1073V4, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1           11             76
  CLUS_2            5             75
  CLUS_3           16             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDN1 MUTATED        5     15     23
  MDN1 WILD-TYPE     84    145    115
D1073V5, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           15            145
  CLUS_3           23            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDN1 MUTATED       21     15      7
  MDN1 WILD-TYPE    161    118     65
D1073V6, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1           21            161
  CLUS_2           15            118
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDN1 MUTATED        7     19      8     23
  MDN1 WILD-TYPE    105     77     84    163
D1073V7, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1            7            105
  CLUS_2           19             77
  CLUS_3            8             84
  CLUS_4           23            163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MDN1 MUTATED        4     10     12      4      3      5     19
  MDN1 WILD-TYPE     56     40     37     36     60    120     80
D1073V8, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1            4             56
  CLUS_2           10             40
  CLUS_3           12             37
  CLUS_4            4             36
  CLUS_5            3             60
  CLUS_6            5            120
  CLUS_7           19             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDN1 MUTATED       19      3      4     29
  MDN1 WILD-TYPE    111     75     64    167
D1073V9, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1           19            111
  CLUS_2            3             75
  CLUS_3            4             64
  CLUS_4           29            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MDN1 MUTATED        6      6      3      3     19      1      8      4      5
  MDN1 WILD-TYPE     34     56     25     77     50     47     35     24     69
D1073V10, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            6             56
  CLUS_3            3             25
  CLUS_4            3             77
  CLUS_5           19             50
  CLUS_6            1             47
  CLUS_7            8             35
  CLUS_8            4             24
  CLUS_9            5             69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDN1 MUTATED        3      1      0      6
  MDN1 WILD-TYPE     30     30     27     13
D1073V11, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            6             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDN1 MUTATED        7      0      3      0
  MDN1 WILD-TYPE     47     10     21     22
D1073V12, multiclass
        clus
vv       MDN1 MUTATED MDN1 WILD-TYPE
  CLUS_1            7             47
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1074) Variable = COCH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COCH MUTATED        1      1      0      0
  COCH WILD-TYPE     45     57     64     43
D1074V1, multiclass
[1] "Remove cluster labels:" "COCH MUTATED"          
clus
  COCH MUTATED COCH WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3950     TCGA-AA-3952 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AY-4071 
"COCH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COCH MUTATED        1      1      0
  COCH WILD-TYPE     50     82     77
D1074V2, multiclass
[1] "Remove cluster labels:" "COCH MUTATED"          
clus
  COCH MUTATED COCH WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3950     TCGA-AA-3952 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AY-4071 
"COCH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COCH MUTATED        5      2      0      0
  COCH WILD-TYPE    173    181    101     20
D1074V3, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COCH MUTATED        1      0      3
  COCH WILD-TYPE     86     80     97
D1074V4, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COCH MUTATED        1      2      2
  COCH WILD-TYPE     88    158    136
D1074V5, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COCH MUTATED        3      1      1
  COCH WILD-TYPE    179    132     71
D1074V6, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            3            179
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COCH MUTATED        1      1      3      2
  COCH WILD-TYPE    111     95     89    184
D1074V7, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COCH MUTATED        1      2      0      1      1      1      1
  COCH WILD-TYPE     59     48     49     39     62    124     98
D1074V8, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COCH MUTATED        4      1      0      2
  COCH WILD-TYPE    126     77     68    194
D1074V9, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  COCH MUTATED        2      1      0      2      0      0      0      2      0
  COCH WILD-TYPE     38     61     28     78     69     48     43     26     74
D1074V10, multiclass
        clus
vv       COCH MUTATED COCH WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COCH MUTATED        1      0      0      0
  COCH WILD-TYPE     32     31     27     19
D1074V11, multiclass
[1] "Remove cluster labels:" "COCH MUTATED"          
clus
  COCH MUTATED COCH WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-G5-6641 
"COCH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COCH MUTATED        1      0      0      0
  COCH WILD-TYPE     53     10     24     22
D1074V12, multiclass
[1] "Remove cluster labels:" "COCH MUTATED"          
clus
  COCH MUTATED COCH WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" "COCH WILD-TYPE" 
    TCGA-G5-6641 
"COCH WILD-TYPE" 

Clustering(1075) Variable = MFSD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD9 MUTATED        1      0      0      2
  MFSD9 WILD-TYPE     45     58     64     41
D1075V1, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD9 MUTATED        1      1      1
  MFSD9 WILD-TYPE     50     82     76
D1075V2, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD9 MUTATED        9      1      2      0
  MFSD9 WILD-TYPE    169    182     99     20
D1075V3, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD9 MUTATED        3      0      6
  MFSD9 WILD-TYPE     84     80     94
D1075V4, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD9 MUTATED        1      3      5
  MFSD9 WILD-TYPE     88    157    133
D1075V5, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD9 MUTATED        5      3      1
  MFSD9 WILD-TYPE    177    130     71
D1075V6, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD9 MUTATED        2      5      3      2
  MFSD9 WILD-TYPE    110     91     89    184
D1075V7, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFSD9 MUTATED        1      2      6      0      0      1      2
  MFSD9 WILD-TYPE     59     48     43     40     63    124     97
D1075V8, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD9 MUTATED        6      1      0      5
  MFSD9 WILD-TYPE    124     77     68    191
D1075V9, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MFSD9 MUTATED        1      2      1      3      4      0      0      0
  MFSD9 WILD-TYPE     39     60     27     77     65     48     43     28
                 vv
clus              CLUS_9
  MFSD9 MUTATED        1
  MFSD9 WILD-TYPE     73
D1075V10, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD9 MUTATED        2      0      1      0
  MFSD9 WILD-TYPE     31     31     26     19
D1075V11, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD9 MUTATED        2      0      1      0
  MFSD9 WILD-TYPE     52     10     23     22
D1075V12, multiclass
        clus
vv       MFSD9 MUTATED MFSD9 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1076) Variable = HSPA4L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA4L MUTATED        2      0      0      3
  HSPA4L WILD-TYPE     44     58     64     40
D1076V1, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HSPA4L MUTATED        3      0      2
  HSPA4L WILD-TYPE     48     83     75
D1076V2, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA4L MUTATED        9      2      1      0
  HSPA4L WILD-TYPE    169    181    100     20
D1076V3, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              9              169
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HSPA4L MUTATED        2      2      3
  HSPA4L WILD-TYPE     85     78     97
D1076V4, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HSPA4L MUTATED        2      4      3
  HSPA4L WILD-TYPE     87    156    135
D1076V5, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HSPA4L MUTATED        5      3      1
  HSPA4L WILD-TYPE    177    130     71
D1076V6, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA4L MUTATED        3      2      2      5
  HSPA4L WILD-TYPE    109     94     90    181
D1076V7, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSPA4L MUTATED        3      1      1      0      3      0      4
  HSPA4L WILD-TYPE     57     49     48     40     60    125     95
D1076V8, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA4L MUTATED        2      2      2      6
  HSPA4L WILD-TYPE    128     76     66    190
D1076V9, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HSPA4L MUTATED        0      3      1      1      5      0      1      0
  HSPA4L WILD-TYPE     40     59     27     79     64     48     42     28
                  vv
clus               CLUS_9
  HSPA4L MUTATED        1
  HSPA4L WILD-TYPE     73
D1076V10, multiclass
        clus
vv       HSPA4L MUTATED HSPA4L WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA4L MUTATED        0      0      1      0
  HSPA4L WILD-TYPE     33     31     26     19
D1076V11, multiclass
[1] "Remove cluster labels:" "HSPA4L MUTATED"        
clus
  HSPA4L MUTATED HSPA4L WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-G5-6641 
"HSPA4L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA4L MUTATED        0      0      1      0
  HSPA4L WILD-TYPE     54     10     23     22
D1076V12, multiclass
[1] "Remove cluster labels:" "HSPA4L MUTATED"        
clus
  HSPA4L MUTATED HSPA4L WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" "HSPA4L WILD-TYPE" 
      TCGA-G5-6641 
"HSPA4L WILD-TYPE" 

Clustering(1077) Variable = TMTC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMTC4 MUTATED        2      1      0      1
  TMTC4 WILD-TYPE     44     57     64     42
D1077V1, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMTC4 MUTATED        2      1      1
  TMTC4 WILD-TYPE     49     82     76
D1077V2, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMTC4 MUTATED        9      4      1      1
  TMTC4 WILD-TYPE    169    179    100     19
D1077V3, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMTC4 MUTATED        4      2      5
  TMTC4 WILD-TYPE     83     78     95
D1077V4, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMTC4 MUTATED        4      3      5
  TMTC4 WILD-TYPE     85    157    133
D1077V5, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMTC4 MUTATED        7      2      3
  TMTC4 WILD-TYPE    175    131     69
D1077V6, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMTC4 MUTATED        3      3      5      4
  TMTC4 WILD-TYPE    109     93     87    182
D1077V7, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMTC4 MUTATED        3      3      3      0      2      1      3
  TMTC4 WILD-TYPE     57     47     46     40     61    124     96
D1077V8, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMTC4 MUTATED        6      3      2      4
  TMTC4 WILD-TYPE    124     75     66    192
D1077V9, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMTC4 MUTATED        3      3      1      3      4      0      1      0
  TMTC4 WILD-TYPE     37     59     27     77     65     48     42     28
                 vv
clus              CLUS_9
  TMTC4 MUTATED        0
  TMTC4 WILD-TYPE     74
D1077V10, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMTC4 MUTATED        3      0      2      3
  TMTC4 WILD-TYPE     30     31     25     16
D1077V11, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMTC4 MUTATED        5      0      2      1
  TMTC4 WILD-TYPE     49     10     22     21
D1077V12, multiclass
        clus
vv       TMTC4 MUTATED TMTC4 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1078) Variable = TGIF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGIF1 MUTATED        1      0      2      0
  TGIF1 WILD-TYPE     45     58     62     43
D1078V1, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TGIF1 MUTATED        0      0      3
  TGIF1 WILD-TYPE     51     83     74
D1078V2, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGIF1 MUTATED        6      2      2      1
  TGIF1 WILD-TYPE    172    181     99     19
D1078V3, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TGIF1 MUTATED        3      3      2
  TGIF1 WILD-TYPE     84     77     98
D1078V4, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TGIF1 MUTATED        1      7      2
  TGIF1 WILD-TYPE     88    153    136
D1078V5, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TGIF1 MUTATED        3      5      2
  TGIF1 WILD-TYPE    179    128     70
D1078V6, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGIF1 MUTATED        3      1      3      4
  TGIF1 WILD-TYPE    109     95     89    182
D1078V7, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TGIF1 MUTATED        4      1      1      1      0      3      1
  TGIF1 WILD-TYPE     56     49     48     39     63    122     98
D1078V8, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             3             122
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGIF1 MUTATED        2      2      1      6
  TGIF1 WILD-TYPE    128     76     67    190
D1078V9, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TGIF1 MUTATED        2      1      0      1      0      3      1      1
  TGIF1 WILD-TYPE     38     61     28     79     69     45     42     27
                 vv
clus              CLUS_9
  TGIF1 MUTATED        2
  TGIF1 WILD-TYPE     72
D1078V10, multiclass
        clus
vv       TGIF1 MUTATED TGIF1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGIF1 MUTATED        0      0      0      0
  TGIF1 WILD-TYPE     33     31     27     19
D1078V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGIF1 MUTATED        0      0      0      0
  TGIF1 WILD-TYPE     54     10     24     22
D1078V12, multiclass

Clustering(1079) Variable = TBL1XR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        3      0      0      2
  TBL1XR1 WILD-TYPE     43     58     64     41
D1079V1, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        3      2      0
  TBL1XR1 WILD-TYPE     48     81     77
D1079V2, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                81
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED       11      2      0      0
  TBL1XR1 WILD-TYPE    167    181    101     20
D1079V3, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        5      1      1
  TBL1XR1 WILD-TYPE     82     79     99
D1079V4, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               1                79
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        3      3      4
  TBL1XR1 WILD-TYPE     86    157    134
D1079V5, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               3               157
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        5      4      1
  TBL1XR1 WILD-TYPE    177    129     71
D1079V6, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        0      2      4      7
  TBL1XR1 WILD-TYPE    112     94     88    179
D1079V7, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TBL1XR1 MUTATED        0      0      3      1      2      1      6
  TBL1XR1 WILD-TYPE     60     50     46     39     61    124     93
D1079V8, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        2      3      0      7
  TBL1XR1 WILD-TYPE    128     75     68    189
D1079V9, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TBL1XR1 MUTATED        1      5      1      1      2      0      0      1
  TBL1XR1 WILD-TYPE     39     57     27     79     67     48     43     27
                   vv
clus                CLUS_9
  TBL1XR1 MUTATED        1
  TBL1XR1 WILD-TYPE     73
D1079V10, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               5                57
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        0      2      0      0
  TBL1XR1 WILD-TYPE     33     29     27     19
D1079V11, multiclass
[1] "Remove cluster labels:" "TBL1XR1 MUTATED"       
clus
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CL-5918        TCGA-CM-5860 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        2      0      0      0
  TBL1XR1 WILD-TYPE     52     10     24     22
D1079V12, multiclass
[1] "Remove cluster labels:" "TBL1XR1 MUTATED"       
clus
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CL-5918        TCGA-CM-5860 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" "TBL1XR1 WILD-TYPE" 

Clustering(1080) Variable = NXF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXF3 MUTATED        0      0      0      2
  NXF3 WILD-TYPE     46     58     64     41
D1080V1, multiclass
[1] "Remove cluster labels:" "NXF3 MUTATED"          
clus
  NXF3 MUTATED NXF3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AY-4071 
"NXF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NXF3 MUTATED        1      0      1
  NXF3 WILD-TYPE     50     83     76
D1080V2, multiclass
[1] "Remove cluster labels:" "NXF3 MUTATED"          
clus
  NXF3 MUTATED NXF3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AY-4071 
"NXF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXF3 MUTATED        6      3      3      0
  NXF3 WILD-TYPE    172    180     98     20
D1080V3, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NXF3 MUTATED        4      5      1
  NXF3 WILD-TYPE     83     75     99
D1080V4, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            5             75
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NXF3 MUTATED        0      3      5
  NXF3 WILD-TYPE     89    157    133
D1080V5, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NXF3 MUTATED        5      3      0
  NXF3 WILD-TYPE    177    130     72
D1080V6, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXF3 MUTATED        6      1      3      2
  NXF3 WILD-TYPE    106     95     89    184
D1080V7, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            6            106
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NXF3 MUTATED        7      0      3      0      1      0      1
  NXF3 WILD-TYPE     53     50     46     40     62    125     98
D1080V8, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            7             53
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXF3 MUTATED        4      2      3      3
  NXF3 WILD-TYPE    126     76     65    193
D1080V9, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            3             65
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NXF3 MUTATED        1      2      2      1      4      0      2      0      0
  NXF3 WILD-TYPE     39     60     26     79     65     48     41     28     74
D1080V10, multiclass
        clus
vv       NXF3 MUTATED NXF3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXF3 MUTATED        1      0      0      1
  NXF3 WILD-TYPE     32     31     27     18
D1080V11, multiclass
[1] "Remove cluster labels:" "NXF3 MUTATED"          
clus
  NXF3 MUTATED NXF3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXF3 MUTATED        1      0      1      0
  NXF3 WILD-TYPE     53     10     23     22
D1080V12, multiclass
[1] "Remove cluster labels:" "NXF3 MUTATED"          
clus
  NXF3 MUTATED NXF3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" "NXF3 WILD-TYPE" 

Clustering(1081) Variable = SBNO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        1      0      1      4
  SBNO1 WILD-TYPE     45     58     63     39
D1081V1, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        2      2      2
  SBNO1 WILD-TYPE     49     81     75
D1081V2, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED       11      2      5      0
  SBNO1 WILD-TYPE    167    181     96     20
D1081V3, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        7      1      4
  SBNO1 WILD-TYPE     80     79     96
D1081V4, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        1      6      9
  SBNO1 WILD-TYPE     88    154    129
D1081V5, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        8      4      4
  SBNO1 WILD-TYPE    174    129     68
D1081V6, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             4             129
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        2      6      4      6
  SBNO1 WILD-TYPE    110     90     88    180
D1081V7, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SBNO1 MUTATED        1      2      7      0      3      1      4
  SBNO1 WILD-TYPE     59     48     42     40     60    124     95
D1081V8, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        5      4      1      8
  SBNO1 WILD-TYPE    125     74     67    188
D1081V9, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SBNO1 MUTATED        2      4      3      0      6      0      1      1
  SBNO1 WILD-TYPE     38     58     25     80     63     48     42     27
                 vv
clus              CLUS_9
  SBNO1 MUTATED        1
  SBNO1 WILD-TYPE     73
D1081V10, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        1      0      1      3
  SBNO1 WILD-TYPE     32     31     26     16
D1081V11, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        3      0      2      0
  SBNO1 WILD-TYPE     51     10     22     22
D1081V12, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1082) Variable = FLT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT1 MUTATED        6      1      0      4
  FLT1 WILD-TYPE     40     57     64     39
D1082V1, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT1 MUTATED        7      1      3
  FLT1 WILD-TYPE     44     82     74
D1082V2, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT1 MUTATED       21     10      4      0
  FLT1 WILD-TYPE    157    173     97     20
D1082V3, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1           21            157
  CLUS_2           10            173
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT1 MUTATED        8      7      8
  FLT1 WILD-TYPE     79     73     92
D1082V4, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            7             73
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT1 MUTATED        3     10     13
  FLT1 WILD-TYPE     86    150    125
D1082V5, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           10            150
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLT1 MUTATED       12     10      4
  FLT1 WILD-TYPE    170    123     68
D1082V6, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1           12            170
  CLUS_2           10            123
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT1 MUTATED       10      9      5     11
  FLT1 WILD-TYPE    102     87     87    175
D1082V7, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1           10            102
  CLUS_2            9             87
  CLUS_3            5             87
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FLT1 MUTATED        6      5      5      4      5      1      9
  FLT1 WILD-TYPE     54     45     44     36     58    124     90
D1082V8, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            5             45
  CLUS_3            5             44
  CLUS_4            4             36
  CLUS_5            5             58
  CLUS_6            1            124
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT1 MUTATED        9      7      4     13
  FLT1 WILD-TYPE    121     71     64    183
D1082V9, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            7             71
  CLUS_3            4             64
  CLUS_4           13            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FLT1 MUTATED        3      7      2      6      8      1      3      2      1
  FLT1 WILD-TYPE     37     55     26     74     61     47     40     26     73
D1082V10, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            7             55
  CLUS_3            2             26
  CLUS_4            6             74
  CLUS_5            8             61
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT1 MUTATED        1      1      2      2
  FLT1 WILD-TYPE     32     30     25     17
D1082V11, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLT1 MUTATED        3      2      1      0
  FLT1 WILD-TYPE     51      8     23     22
D1082V12, multiclass
        clus
vv       FLT1 MUTATED FLT1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            2              8
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1083) Variable = NCL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCL MUTATED        1      0      0      1
  NCL WILD-TYPE     45     58     64     42
D1083V1, multiclass
[1] "Remove cluster labels:" "NCL MUTATED"           
clus
  NCL MUTATED NCL WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NCL MUTATED        2      0      0
  NCL WILD-TYPE     49     83     77
D1083V2, multiclass
[1] "Remove cluster labels:" "NCL MUTATED"           
clus
  NCL MUTATED NCL WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" "NCL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCL MUTATED        6      5      1      0
  NCL WILD-TYPE    172    178    100     20
D1083V3, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           6           172
  CLUS_2           5           178
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NCL MUTATED        3      4      3
  NCL WILD-TYPE     84     76     97
D1083V4, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           3            84
  CLUS_2           4            76
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NCL MUTATED        2      4      3
  NCL WILD-TYPE     87    156    135
D1083V5, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           2            87
  CLUS_2           4           156
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NCL MUTATED        4      3      2
  NCL WILD-TYPE    178    130     70
D1083V6, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           4           178
  CLUS_2           3           130
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCL MUTATED        4      2      3      3
  NCL WILD-TYPE    108     94     89    183
D1083V7, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           4           108
  CLUS_2           2            94
  CLUS_3           3            89
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCL MUTATED        4      0      3      1      0      1      3
  NCL WILD-TYPE     56     50     46     39     63    124     96
D1083V8, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           4            56
  CLUS_2           0            50
  CLUS_3           3            46
  CLUS_4           1            39
  CLUS_5           0            63
  CLUS_6           1           124
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCL MUTATED        5      2      1      3
  NCL WILD-TYPE    125     76     67    193
D1083V9, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           5           125
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NCL MUTATED        3      1      0      2      3      0      1      0      1
  NCL WILD-TYPE     37     61     28     78     66     48     42     28     73
D1083V10, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           3            37
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           2            78
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCL MUTATED        2      1      0      1
  NCL WILD-TYPE     31     30     27     18
D1083V11, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCL MUTATED        3      0      1      0
  NCL WILD-TYPE     51     10     23     22
D1083V12, multiclass
        clus
vv       NCL MUTATED NCL WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1084) Variable = SMC1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC1B MUTATED        4      0      0      3
  SMC1B WILD-TYPE     42     58     64     40
D1084V1, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMC1B MUTATED        3      2      2
  SMC1B WILD-TYPE     48     81     75
D1084V2, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC1B MUTATED       18      3      1      0
  SMC1B WILD-TYPE    160    180    100     20
D1084V3, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1            18             160
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMC1B MUTATED        9      1      6
  SMC1B WILD-TYPE     78     79     94
D1084V4, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             9              78
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMC1B MUTATED        3      9      7
  SMC1B WILD-TYPE     86    151    131
D1084V5, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             3              86
  CLUS_2             9             151
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMC1B MUTATED        7      7      5
  SMC1B WILD-TYPE    175    126     67
D1084V6, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             7             175
  CLUS_2             7             126
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC1B MUTATED        1      8      5      8
  SMC1B WILD-TYPE    111     88     87    178
D1084V7, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             1             111
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMC1B MUTATED        1      2      6      3      3      1      6
  SMC1B WILD-TYPE     59     48     43     37     60    124     93
D1084V8, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC1B MUTATED        4      5      1     12
  SMC1B WILD-TYPE    126     73     67    184
D1084V9, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             4             126
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMC1B MUTATED        1      5      2      2      7      0      3      0
  SMC1B WILD-TYPE     39     57     26     78     62     48     40     28
                 vv
clus              CLUS_9
  SMC1B MUTATED        2
  SMC1B WILD-TYPE     72
D1084V10, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC1B MUTATED        2      2      0      5
  SMC1B WILD-TYPE     31     29     27     14
D1084V11, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC1B MUTATED        6      0      2      1
  SMC1B WILD-TYPE     48     10     22     21
D1084V12, multiclass
        clus
vv       SMC1B MUTATED SMC1B WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1085) Variable = HRSP12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRSP12 MUTATED        1      0      0      2
  HRSP12 WILD-TYPE     45     58     64     41
D1085V1, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HRSP12 MUTATED        1      1      1
  HRSP12 WILD-TYPE     50     82     76
D1085V2, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRSP12 MUTATED        6      0      1      0
  HRSP12 WILD-TYPE    172    183    100     20
D1085V3, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HRSP12 MUTATED        2      0      2
  HRSP12 WILD-TYPE     85     80     98
D1085V4, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HRSP12 MUTATED        0      4      2
  HRSP12 WILD-TYPE     89    156    136
D1085V5, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HRSP12 MUTATED        0      5      1
  HRSP12 WILD-TYPE    182    128     71
D1085V6, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              0              182
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRSP12 MUTATED        0      3      0      4
  HRSP12 WILD-TYPE    112     93     92    182
D1085V7, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              0               92
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HRSP12 MUTATED        1      2      1      0      0      0      3
  HRSP12 WILD-TYPE     59     48     48     40     63    125     96
D1085V8, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRSP12 MUTATED        2      0      0      5
  HRSP12 WILD-TYPE    128     78     68    191
D1085V9, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HRSP12 MUTATED        0      0      1      1      3      0      0      0
  HRSP12 WILD-TYPE     40     62     27     79     66     48     43     28
                  vv
clus               CLUS_9
  HRSP12 MUTATED        2
  HRSP12 WILD-TYPE     72
D1085V10, multiclass
        clus
vv       HRSP12 MUTATED HRSP12 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRSP12 MUTATED        0      0      0      1
  HRSP12 WILD-TYPE     33     31     27     18
D1085V11, multiclass
[1] "Remove cluster labels:" "HRSP12 MUTATED"        
clus
  HRSP12 MUTATED HRSP12 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-G5-6641 
"HRSP12 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRSP12 MUTATED        0      0      1      0
  HRSP12 WILD-TYPE     54     10     23     22
D1085V12, multiclass
[1] "Remove cluster labels:" "HRSP12 MUTATED"        
clus
  HRSP12 MUTATED HRSP12 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" "HRSP12 WILD-TYPE" 
      TCGA-G5-6641 
"HRSP12 WILD-TYPE" 

Clustering(1086) Variable = RRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        0      0      0      0
  RRS1 WILD-TYPE     46     58     64     43
D1086V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        0      0      0
  RRS1 WILD-TYPE     51     83     77
D1086V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        3      1      0      0
  RRS1 WILD-TYPE    175    182    101     20
D1086V3, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        1      1      2
  RRS1 WILD-TYPE     86     79     98
D1086V4, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        0      0      4
  RRS1 WILD-TYPE     89    160    134
D1086V5, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            0            160
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        4      0      0
  RRS1 WILD-TYPE    178    133     72
D1086V6, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            0            133
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        1      1      2      0
  RRS1 WILD-TYPE    111     95     90    186
D1086V7, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RRS1 MUTATED        0      0      3      0      1      0      0
  RRS1 WILD-TYPE     60     50     46     40     62    125     99
D1086V8, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        2      1      0      1
  RRS1 WILD-TYPE    128     77     68    195
D1086V9, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RRS1 MUTATED        1      1      0      0      2      0      0      0      0
  RRS1 WILD-TYPE     39     61     28     80     67     48     43     28     74
D1086V10, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        0      0      0      0
  RRS1 WILD-TYPE     33     31     27     19
D1086V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        0      0      0      0
  RRS1 WILD-TYPE     54     10     24     22
D1086V12, multiclass

Clustering(1087) Variable = CTCF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        4      1      1      3
  CTCF WILD-TYPE     42     57     63     40
D1087V1, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        4      3      2
  CTCF WILD-TYPE     47     80     75
D1087V2, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4             47
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED       12      3      3      1
  CTCF WILD-TYPE    166    180     98     19
D1087V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1           12            166
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        6      1      4
  CTCF WILD-TYPE     81     79     96
D1087V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        1     11      4
  CTCF WILD-TYPE     88    149    134
D1087V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             88
  CLUS_2           11            149
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        5      8      3
  CTCF WILD-TYPE    177    125     69
D1087V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            5            177
  CLUS_2            8            125
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        2      7      2      8
  CTCF WILD-TYPE    110     89     90    178
D1087V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2            110
  CLUS_2            7             89
  CLUS_3            2             90
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTCF MUTATED        2      0      6      2      1      2      6
  CTCF WILD-TYPE     58     50     43     38     62    123     93
D1087V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        8      0      1     10
  CTCF WILD-TYPE    122     78     67    186
D1087V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            8            122
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CTCF MUTATED        3      2      3      2      6      0      1      0      2
  CTCF WILD-TYPE     37     60     25     78     63     48     42     28     72
D1087V10, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        0      1      0      1
  CTCF WILD-TYPE     33     30     27     18
D1087V11, multiclass
[1] "Remove cluster labels:" "CTCF MUTATED"          
clus
  CTCF MUTATED CTCF WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6601 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        1      0      1      0
  CTCF WILD-TYPE     53     10     23     22
D1087V12, multiclass
[1] "Remove cluster labels:" "CTCF MUTATED"          
clus
  CTCF MUTATED CTCF WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6601 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" "CTCF WILD-TYPE" 

Clustering(1088) Variable = RNF38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF38 MUTATED        0      0      1      1
  RNF38 WILD-TYPE     46     58     63     42
D1088V1, multiclass
[1] "Remove cluster labels:" "RNF38 MUTATED"         
clus
  RNF38 MUTATED RNF38 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AY-4070 
"RNF38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF38 MUTATED        0      2      0
  RNF38 WILD-TYPE     51     81     77
D1088V2, multiclass
[1] "Remove cluster labels:" "RNF38 MUTATED"         
clus
  RNF38 MUTATED RNF38 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" "RNF38 WILD-TYPE" 
     TCGA-AY-4070 
"RNF38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF38 MUTATED        4      1      1      0
  RNF38 WILD-TYPE    174    182    100     20
D1088V3, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF38 MUTATED        2      0      2
  RNF38 WILD-TYPE     85     80     98
D1088V4, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF38 MUTATED        1      3      1
  RNF38 WILD-TYPE     88    157    137
D1088V5, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF38 MUTATED        2      3      0
  RNF38 WILD-TYPE    180    130     72
D1088V6, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF38 MUTATED        0      2      2      2
  RNF38 WILD-TYPE    112     94     90    184
D1088V7, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF38 MUTATED        0      1      3      0      0      1      1
  RNF38 WILD-TYPE     60     49     46     40     63    124     98
D1088V8, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF38 MUTATED        2      1      2      1
  RNF38 WILD-TYPE    128     77     66    195
D1088V9, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF38 MUTATED        1      1      1      0      1      0      1      0
  RNF38 WILD-TYPE     39     61     27     80     68     48     42     28
                 vv
clus              CLUS_9
  RNF38 MUTATED        1
  RNF38 WILD-TYPE     73
D1088V10, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF38 MUTATED        1      0      1      1
  RNF38 WILD-TYPE     32     31     26     18
D1088V11, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF38 MUTATED        2      0      1      0
  RNF38 WILD-TYPE     52     10     23     22
D1088V12, multiclass
        clus
vv       RNF38 MUTATED RNF38 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1089) Variable = ANKRD50 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD50 MUTATED        4      0      0      4
  ANKRD50 WILD-TYPE     42     58     64     39
D1089V1, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD50 MUTATED        5      1      2
  ANKRD50 WILD-TYPE     46     82     75
D1089V2, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD50 MUTATED       17      2      2      0
  ANKRD50 WILD-TYPE    161    181     99     20
D1089V3, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1              17               161
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD50 MUTATED        3      0      8
  ANKRD50 WILD-TYPE     84     80     92
D1089V4, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD50 MUTATED        5      7      5
  ANKRD50 WILD-TYPE     84    153    133
D1089V5, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               7               153
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD50 MUTATED        5      8      4
  ANKRD50 WILD-TYPE    177    125     68
D1089V6, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               8               125
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD50 MUTATED        0      7      5      9
  ANKRD50 WILD-TYPE    112     89     87    177
D1089V7, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               7                89
  CLUS_3               5                87
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD50 MUTATED        2      0      6      2      2      0      9
  ANKRD50 WILD-TYPE     58     50     43     38     61    125     90
D1089V8, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               6                43
  CLUS_4               2                38
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               9                90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD50 MUTATED        5      2      2     10
  ANKRD50 WILD-TYPE    125     76     66    186
D1089V9, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4              10               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD50 MUTATED        1      3      2      1     10      0      1      1
  ANKRD50 WILD-TYPE     39     59     26     79     59     48     42     27
                   vv
clus                CLUS_9
  ANKRD50 MUTATED        0
  ANKRD50 WILD-TYPE     74
D1089V10, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5              10                59
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD50 MUTATED        0      1      0      2
  ANKRD50 WILD-TYPE     33     30     27     17
D1089V11, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD50 MUTATED        2      0      1      0
  ANKRD50 WILD-TYPE     52     10     23     22
D1089V12, multiclass
        clus
vv       ANKRD50 MUTATED ANKRD50 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1090) Variable = DNAJC16 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC16 MUTATED        1      1      0      2
  DNAJC16 WILD-TYPE     45     57     64     41
D1090V1, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC16 MUTATED        1      2      1
  DNAJC16 WILD-TYPE     50     81     76
D1090V2, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC16 MUTATED        7      1      2      1
  DNAJC16 WILD-TYPE    171    182     99     19
D1090V3, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC16 MUTATED        3      1      4
  DNAJC16 WILD-TYPE     84     79     96
D1090V4, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC16 MUTATED        1      5      4
  DNAJC16 WILD-TYPE     88    155    134
D1090V5, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               5               155
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJC16 MUTATED        4      4      2
  DNAJC16 WILD-TYPE    178    129     70
D1090V6, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC16 MUTATED        1      4      2      4
  DNAJC16 WILD-TYPE    111     92     90    182
D1090V7, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJC16 MUTATED        2      2      3      1      0      1      2
  DNAJC16 WILD-TYPE     58     48     46     39     63    124     97
D1090V8, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC16 MUTATED        4      1      1      5
  DNAJC16 WILD-TYPE    126     77     67    191
D1090V9, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAJC16 MUTATED        0      1      2      2      2      0      3      0
  DNAJC16 WILD-TYPE     40     61     26     78     67     48     40     28
                   vv
clus                CLUS_9
  DNAJC16 MUTATED        1
  DNAJC16 WILD-TYPE     73
D1090V10, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               3                40
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC16 MUTATED        0      1      1      2
  DNAJC16 WILD-TYPE     33     30     26     17
D1090V11, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC16 MUTATED        3      0      1      0
  DNAJC16 WILD-TYPE     51     10     23     22
D1090V12, multiclass
        clus
vv       DNAJC16 MUTATED DNAJC16 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1091) Variable = PIGK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGK MUTATED        1      0      0      3
  PIGK WILD-TYPE     45     58     64     40
D1091V1, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGK MUTATED        3      0      1
  PIGK WILD-TYPE     48     83     76
D1091V2, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGK MUTATED        8      3      1      0
  PIGK WILD-TYPE    170    180    100     20
D1091V3, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            8            170
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGK MUTATED        2      3      3
  PIGK WILD-TYPE     85     77     97
D1091V4, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3             77
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGK MUTATED        2      2      3
  PIGK WILD-TYPE     87    158    135
D1091V5, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGK MUTATED        3      3      1
  PIGK WILD-TYPE    179    130     71
D1091V6, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGK MUTATED        3      4      1      4
  PIGK WILD-TYPE    109     92     91    182
D1091V7, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIGK MUTATED        2      2      2      2      1      0      3
  PIGK WILD-TYPE     58     48     47     38     62    125     96
D1091V8, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGK MUTATED        6      1      1      4
  PIGK WILD-TYPE    124     77     67    192
D1091V9, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PIGK MUTATED        2      1      0      2      5      0      2      0      0
  PIGK WILD-TYPE     38     61     28     78     64     48     41     28     74
D1091V10, multiclass
        clus
vv       PIGK MUTATED PIGK WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGK MUTATED        0      0      0      0
  PIGK WILD-TYPE     33     31     27     19
D1091V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGK MUTATED        0      0      0      0
  PIGK WILD-TYPE     54     10     24     22
D1091V12, multiclass

Clustering(1092) Variable = COPB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPB2 MUTATED        1      0      1      3
  COPB2 WILD-TYPE     45     58     63     40
D1092V1, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPB2 MUTATED        2      1      2
  COPB2 WILD-TYPE     49     82     75
D1092V2, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPB2 MUTATED       11      2      3      0
  COPB2 WILD-TYPE    167    181     98     20
D1092V3, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPB2 MUTATED        4      3      4
  COPB2 WILD-TYPE     83     77     96
D1092V4, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPB2 MUTATED        2      4      9
  COPB2 WILD-TYPE     87    156    129
D1092V5, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COPB2 MUTATED        9      5      1
  COPB2 WILD-TYPE    173    128     71
D1092V6, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPB2 MUTATED        4      5      2      5
  COPB2 WILD-TYPE    108     91     90    181
D1092V7, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COPB2 MUTATED        3      0      6      1      2      1      3
  COPB2 WILD-TYPE     57     50     43     39     61    124     96
D1092V8, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPB2 MUTATED        5      3      1      6
  COPB2 WILD-TYPE    125     75     67    190
D1092V9, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COPB2 MUTATED        0      1      1      1      8      3      1      0
  COPB2 WILD-TYPE     40     61     27     79     61     45     42     28
                 vv
clus              CLUS_9
  COPB2 MUTATED        0
  COPB2 WILD-TYPE     74
D1092V10, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPB2 MUTATED        1      1      1      2
  COPB2 WILD-TYPE     32     30     26     17
D1092V11, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COPB2 MUTATED        1      0      2      2
  COPB2 WILD-TYPE     53     10     22     20
D1092V12, multiclass
        clus
vv       COPB2 MUTATED COPB2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1093) Variable = CIZ1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIZ1 MUTATED        2      1      2      2
  CIZ1 WILD-TYPE     44     57     62     41
D1093V1, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIZ1 MUTATED        2      2      3
  CIZ1 WILD-TYPE     49     81     74
D1093V2, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIZ1 MUTATED       11      3      1      0
  CIZ1 WILD-TYPE    167    180    100     20
D1093V3, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIZ1 MUTATED        2      1      5
  CIZ1 WILD-TYPE     85     79     95
D1093V4, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIZ1 MUTATED        3      6      4
  CIZ1 WILD-TYPE     86    154    134
D1093V5, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIZ1 MUTATED        3      8      2
  CIZ1 WILD-TYPE    179    125     70
D1093V6, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            8            125
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIZ1 MUTATED        1      5      2      7
  CIZ1 WILD-TYPE    111     91     90    179
D1093V7, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIZ1 MUTATED        2      3      4      0      0      2      4
  CIZ1 WILD-TYPE     58     47     45     40     63    123     95
D1093V8, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIZ1 MUTATED        7      0      0      9
  CIZ1 WILD-TYPE    123     78     68    187
D1093V9, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CIZ1 MUTATED        2      2      0      2      5      0      1      1      3
  CIZ1 WILD-TYPE     38     60     28     78     64     48     42     27     71
D1093V10, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIZ1 MUTATED        0      0      0      3
  CIZ1 WILD-TYPE     33     31     27     16
D1093V11, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIZ1 MUTATED        1      0      2      0
  CIZ1 WILD-TYPE     53     10     22     22
D1093V12, multiclass
        clus
vv       CIZ1 MUTATED CIZ1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1094) Variable = TMEM92 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        1      0      0      0
  TMEM92 WILD-TYPE     45     58     64     43
D1094V1, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        1      0      0
  TMEM92 WILD-TYPE     50     83     77
D1094V2, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        3      0      0      0
  TMEM92 WILD-TYPE    175    183    101     20
D1094V3, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        0      0      2
  TMEM92 WILD-TYPE     87     80     98
D1094V4, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6890 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901       TCGA-AD-6963 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742       TCGA-AG-A01W 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5914 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917       TCGA-CL-5918 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-5538 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929       TCGA-D5-6930 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000       TCGA-DC-5337 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G5-6641 
"TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        0      1      1
  TMEM92 WILD-TYPE     89    159    137
D1094V5, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3525       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3950       TCGA-AA-3955 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900       TCGA-AD-6548 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-6899       TCGA-AD-6965       TCGA-AF-2689       TCGA-AF-3400 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AF-5654       TCGA-AF-6136       TCGA-AF-6655 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3574       TCGA-AG-3578       TCGA-AG-3580 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609       TCGA-AG-3612 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3731       TCGA-AG-3742       TCGA-AG-3878 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3885       TCGA-AG-3893 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-6004 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4682 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6621 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918       TCGA-CM-4743 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G5-6641 
"TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        0      1      1
  TMEM92 WILD-TYPE    182    132     71
D1094V6, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3525       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3950       TCGA-AA-3955 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900       TCGA-AD-6548 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-6899       TCGA-AD-6965       TCGA-AF-2689       TCGA-AF-3400 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AF-5654       TCGA-AF-6136       TCGA-AF-6655 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3574       TCGA-AG-3578       TCGA-AG-3580 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609       TCGA-AG-3612 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3731       TCGA-AG-3742       TCGA-AG-3878 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3885       TCGA-AG-3893 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-6004 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4682 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6621 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918       TCGA-CM-4743 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G5-6641 
"TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        0      2      0      1
  TMEM92 WILD-TYPE    112     94     92    185
D1094V7, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM92 MUTATED        0      0      2      0      0      0      1
  TMEM92 WILD-TYPE     60     50     47     40     63    125     98
D1094V8, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        2      0      0      1
  TMEM92 WILD-TYPE    128     78     68    195
D1094V9, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM92 MUTATED        0      0      0      0      3      0      0      0
  TMEM92 WILD-TYPE     40     62     28     80     66     48     43     28
                  vv
clus               CLUS_9
  TMEM92 MUTATED        0
  TMEM92 WILD-TYPE     74
D1094V10, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        0      0      0      1
  TMEM92 WILD-TYPE     33     31     27     18
D1094V11, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G5-6641 
"TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        0      0      1      0
  TMEM92 WILD-TYPE     54     10     23     22
D1094V12, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-G5-6641 
"TMEM92 WILD-TYPE" 

Clustering(1095) Variable = TAS2R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R1 MUTATED        1      0      0      1
  TAS2R1 WILD-TYPE     45     58     64     42
D1095V1, multiclass
[1] "Remove cluster labels:" "TAS2R1 MUTATED"        
clus
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AY-4071 
"TAS2R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R1 MUTATED        0      1      1
  TAS2R1 WILD-TYPE     51     82     76
D1095V2, multiclass
[1] "Remove cluster labels:" "TAS2R1 MUTATED"        
clus
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AY-4071 
"TAS2R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R1 MUTATED        4      0      1      0
  TAS2R1 WILD-TYPE    174    183    100     20
D1095V3, multiclass
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R1 MUTATED        0      0      3
  TAS2R1 WILD-TYPE     87     80     97
D1095V4, multiclass
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R1 MUTATED        0      2      0
  TAS2R1 WILD-TYPE     89    158    138
D1095V5, multiclass
[1] "Remove cluster labels:" "TAS2R1 MUTATED"        
clus
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3525       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3742       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AH-6644       TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AY-6197       TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-4682       TCGA-AZ-5407       TCGA-AZ-6598 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6621       TCGA-CK-5914       TCGA-CK-5916 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5862       TCGA-CM-5863 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G5-6641 
"TAS2R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TAS2R1 MUTATED        1      1      0
  TAS2R1 WILD-TYPE    181    132     72
D1095V6, multiclass
[1] "Remove cluster labels:" "TAS2R1 MUTATED"        
clus
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3525       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3742       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AH-6644       TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AY-6197       TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-4682       TCGA-AZ-5407       TCGA-AZ-6598 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6621       TCGA-CK-5914       TCGA-CK-5916 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5862       TCGA-CM-5863 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-G5-6641 
"TAS2R1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R1 MUTATED        0      2      1      2
  TAS2R1 WILD-TYPE    112     94     91    184
D1095V7, multiclass
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAS2R1 MUTATED        0      1      2      0      0      1      1
  TAS2R1 WILD-TYPE     60     49     47     40     63    124     98
D1095V8, multiclass
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R1 MUTATED        2      0      0      3
  TAS2R1 WILD-TYPE    128     78     68    193
D1095V9, multiclass
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TAS2R1 MUTATED        0      1      1      2      1      0      0      0
  TAS2R1 WILD-TYPE     40     61     27     78     68     48     43     28
                  vv
clus               CLUS_9
  TAS2R1 MUTATED        0
  TAS2R1 WILD-TYPE     74
D1095V10, multiclass
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R1 MUTATED        0      0      0      0
  TAS2R1 WILD-TYPE     33     31     27     19
D1095V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R1 MUTATED        0      0      0      0
  TAS2R1 WILD-TYPE     54     10     24     22
D1095V12, multiclass

Clustering(1096) Variable = EHHADH MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        1      0      0      2
  EHHADH WILD-TYPE     45     58     64     41
D1096V1, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        2      1      0
  EHHADH WILD-TYPE     49     82     77
D1096V2, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        9      3      1      1
  EHHADH WILD-TYPE    169    180    100     19
D1096V3, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              9              169
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        7      0      5
  EHHADH WILD-TYPE     80     80     95
D1096V4, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              7               80
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        0      5      7
  EHHADH WILD-TYPE     89    155    131
D1096V5, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        7      5      0
  EHHADH WILD-TYPE    175    128     72
D1096V6, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              7              175
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        0      5      6      4
  EHHADH WILD-TYPE    112     91     86    182
D1096V7, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              6               86
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EHHADH MUTATED        1      1      3      1      4      1      4
  EHHADH WILD-TYPE     59     49     46     39     59    124     95
D1096V8, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        3      5      2      4
  EHHADH WILD-TYPE    127     73     66    192
D1096V9, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              3              127
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EHHADH MUTATED        0      6      1      1      4      0      2      0
  EHHADH WILD-TYPE     40     56     27     79     65     48     41     28
                  vv
clus               CLUS_9
  EHHADH MUTATED        0
  EHHADH WILD-TYPE     74
D1096V10, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               40
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        1      1      1      2
  EHHADH WILD-TYPE     32     30     26     17
D1096V11, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        3      0      2      0
  EHHADH WILD-TYPE     51     10     22     22
D1096V12, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1097) Variable = KDM2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2B MUTATED        4      1      1      1
  KDM2B WILD-TYPE     42     57     63     42
D1097V1, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM2B MUTATED        4      1      2
  KDM2B WILD-TYPE     47     82     75
D1097V2, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2B MUTATED       15      3      2      1
  KDM2B WILD-TYPE    163    180     99     19
D1097V3, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1            15             163
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM2B MUTATED        2      4     10
  KDM2B WILD-TYPE     85     76     90
D1097V4, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             2              85
  CLUS_2             4              76
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM2B MUTATED        1      8      8
  KDM2B WILD-TYPE     88    152    130
D1097V5, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM2B MUTATED        8      6      3
  KDM2B WILD-TYPE    174    127     69
D1097V6, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2B MUTATED        4      8      3      7
  KDM2B WILD-TYPE    108     88     89    179
D1097V7, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             4             108
  CLUS_2             8              88
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDM2B MUTATED        3      1     10      1      1      2      4
  KDM2B WILD-TYPE     57     49     39     39     62    123     95
D1097V8, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3            10              39
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2B MUTATED        9      2      0     11
  KDM2B WILD-TYPE    121     76     68    185
D1097V9, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             9             121
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDM2B MUTATED        2      3      0      2      9      2      1      2
  KDM2B WILD-TYPE     38     59     28     78     60     46     42     26
                 vv
clus              CLUS_9
  KDM2B MUTATED        1
  KDM2B WILD-TYPE     73
D1097V10, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             9              60
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2B MUTATED        2      0      0      2
  KDM2B WILD-TYPE     31     31     27     17
D1097V11, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM2B MUTATED        1      0      2      1
  KDM2B WILD-TYPE     53     10     22     21
D1097V12, multiclass
        clus
vv       KDM2B MUTATED KDM2B WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1098) Variable = ITGB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB6 MUTATED        1      0      0      3
  ITGB6 WILD-TYPE     45     58     64     40
D1098V1, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB6 MUTATED        3      1      0
  ITGB6 WILD-TYPE     48     82     77
D1098V2, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB6 MUTATED       13      3      2      0
  ITGB6 WILD-TYPE    165    180     99     20
D1098V3, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB6 MUTATED        6      1      7
  ITGB6 WILD-TYPE     81     79     93
D1098V4, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB6 MUTATED        1      9      7
  ITGB6 WILD-TYPE     88    151    131
D1098V5, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB6 MUTATED        9      7      1
  ITGB6 WILD-TYPE    173    126     71
D1098V6, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB6 MUTATED        2      6      7      3
  ITGB6 WILD-TYPE    110     90     85    183
D1098V7, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGB6 MUTATED        3      1      7      0      3      0      4
  ITGB6 WILD-TYPE     57     49     42     40     60    125     95
D1098V8, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB6 MUTATED        8      5      1      4
  ITGB6 WILD-TYPE    122     73     67    192
D1098V9, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITGB6 MUTATED        1      5      2      2      6      1      1      0
  ITGB6 WILD-TYPE     39     57     26     78     63     47     42     28
                 vv
clus              CLUS_9
  ITGB6 MUTATED        0
  ITGB6 WILD-TYPE     74
D1098V10, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB6 MUTATED        2      0      1      4
  ITGB6 WILD-TYPE     31     31     26     15
D1098V11, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB6 MUTATED        4      0      3      0
  ITGB6 WILD-TYPE     50     10     21     22
D1098V12, multiclass
        clus
vv       ITGB6 MUTATED ITGB6 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1099) Variable = ESCO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED        4      0      0      3
  ESCO1 WILD-TYPE     42     58     64     40
D1099V1, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        4      1      2
  ESCO1 WILD-TYPE     47     82     75
D1099V2, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED       14      2      1      0
  ESCO1 WILD-TYPE    164    181    100     20
D1099V3, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        5      2      4
  ESCO1 WILD-TYPE     82     78     96
D1099V4, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        1      8      4
  ESCO1 WILD-TYPE     88    152    134
D1099V5, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESCO1 MUTATED        3      6      4
  ESCO1 WILD-TYPE    179    127     68
D1099V6, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             6             127
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED        2      5      2      8
  ESCO1 WILD-TYPE    110     91     90    178
D1099V7, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESCO1 MUTATED        2      2      3      2      1      1      6
  ESCO1 WILD-TYPE     58     48     46     38     62    124     93
D1099V8, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED        5      2      1      9
  ESCO1 WILD-TYPE    125     76     67    187
D1099V9, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ESCO1 MUTATED        3      2      1      2      6      0      1      0
  ESCO1 WILD-TYPE     37     60     27     78     63     48     42     28
                 vv
clus              CLUS_9
  ESCO1 MUTATED        2
  ESCO1 WILD-TYPE     72
D1099V10, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED        1      0      0      4
  ESCO1 WILD-TYPE     32     31     27     15
D1099V11, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESCO1 MUTATED        3      0      2      0
  ESCO1 WILD-TYPE     51     10     22     22
D1099V12, multiclass
        clus
vv       ESCO1 MUTATED ESCO1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1100) Variable = SERPINB10 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        1      0      0      3
  SERPINB10 WILD-TYPE     45     58     64     40
D1100V1, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                  45
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 3                  40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB10 MUTATED        2      1      1
  SERPINB10 WILD-TYPE     49     82     76
D1100V2, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 2                  49
  CLUS_2                 1                  82
  CLUS_3                 1                  76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        9      0      3      0
  SERPINB10 WILD-TYPE    169    183     98     20
D1100V3, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 9                 169
  CLUS_2                 0                 183
  CLUS_3                 3                  98
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB10 MUTATED        3      2      3
  SERPINB10 WILD-TYPE     84     78     97
D1100V4, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 3                  84
  CLUS_2                 2                  78
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB10 MUTATED        1      4      4
  SERPINB10 WILD-TYPE     88    156    134
D1100V5, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                  88
  CLUS_2                 4                 156
  CLUS_3                 4                 134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB10 MUTATED        5      3      1
  SERPINB10 WILD-TYPE    177    130     71
D1100V6, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 5                 177
  CLUS_2                 3                 130
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        1      3      3      5
  SERPINB10 WILD-TYPE    111     93     89    181
D1100V7, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 3                  93
  CLUS_3                 3                  89
  CLUS_4                 5                 181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERPINB10 MUTATED        1      2      3      1      1      1      3
  SERPINB10 WILD-TYPE     59     48     46     39     62    124     96
D1100V8, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 2                  48
  CLUS_3                 3                  46
  CLUS_4                 1                  39
  CLUS_5                 1                  62
  CLUS_6                 1                 124
  CLUS_7                 3                  96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        4      3      0      4
  SERPINB10 WILD-TYPE    126     75     68    192
D1100V9, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 4                 126
  CLUS_2                 3                  75
  CLUS_3                 0                  68
  CLUS_4                 4                 192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SERPINB10 MUTATED        0      2      2      1      3      0      2      0
  SERPINB10 WILD-TYPE     40     60     26     79     66     48     41     28
                     vv
clus                  CLUS_9
  SERPINB10 MUTATED        1
  SERPINB10 WILD-TYPE     73
D1100V10, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 2                  60
  CLUS_3                 2                  26
  CLUS_4                 1                  79
  CLUS_5                 3                  66
  CLUS_6                 0                  48
  CLUS_7                 2                  41
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        1      1      0      2
  SERPINB10 WILD-TYPE     32     30     27     17
D1100V11, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 1                  30
  CLUS_3                 0                  27
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        3      0      1      0
  SERPINB10 WILD-TYPE     51     10     23     22
D1100V12, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 3                  51
  CLUS_2                 0                  10
  CLUS_3                 1                  23
  CLUS_4                 0                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1101) Variable = GRB14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB14 MUTATED        4      0      0      1
  GRB14 WILD-TYPE     42     58     64     42
D1101V1, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRB14 MUTATED        3      1      1
  GRB14 WILD-TYPE     48     82     76
D1101V2, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB14 MUTATED        8      3      0      0
  GRB14 WILD-TYPE    170    180    101     20
D1101V3, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRB14 MUTATED        4      0      2
  GRB14 WILD-TYPE     83     80     98
D1101V4, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRB14 MUTATED        1      3      4
  GRB14 WILD-TYPE     88    157    134
D1101V5, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRB14 MUTATED        3      3      2
  GRB14 WILD-TYPE    179    130     70
D1101V6, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB14 MUTATED        2      3      1      5
  GRB14 WILD-TYPE    110     93     91    181
D1101V7, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRB14 MUTATED        2      2      0      3      0      1      3
  GRB14 WILD-TYPE     58     48     49     37     63    124     96
D1101V8, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB14 MUTATED        3      2      1      5
  GRB14 WILD-TYPE    127     76     67    191
D1101V9, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GRB14 MUTATED        2      1      0      2      3      1      1      1
  GRB14 WILD-TYPE     38     61     28     78     66     47     42     27
                 vv
clus              CLUS_9
  GRB14 MUTATED        0
  GRB14 WILD-TYPE     74
D1101V10, multiclass
        clus
vv       GRB14 MUTATED GRB14 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB14 MUTATED        0      0      1      1
  GRB14 WILD-TYPE     33     31     26     18
D1101V11, multiclass
[1] "Remove cluster labels:" "GRB14 MUTATED"         
clus
  GRB14 MUTATED GRB14 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6922 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRB14 MUTATED        1      0      0      1
  GRB14 WILD-TYPE     53     10     24     21
D1101V12, multiclass
[1] "Remove cluster labels:" "GRB14 MUTATED"         
clus
  GRB14 MUTATED GRB14 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6922 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" "GRB14 WILD-TYPE" 

Clustering(1102) Variable = OR6K2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6K2 MUTATED        2      0      1      3
  OR6K2 WILD-TYPE     44     58     63     40
D1102V1, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6K2 MUTATED        3      0      3
  OR6K2 WILD-TYPE     48     83     74
D1102V2, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6K2 MUTATED       16      0      0      0
  OR6K2 WILD-TYPE    162    183    101     20
D1102V3, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6K2 MUTATED        4      0      7
  OR6K2 WILD-TYPE     83     80     93
D1102V4, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6K2 MUTATED        0      7      8
  OR6K2 WILD-TYPE     89    153    130
D1102V5, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             7             153
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6K2 MUTATED        8      6      1
  OR6K2 WILD-TYPE    174    127     71
D1102V6, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6K2 MUTATED        0      9      2      5
  OR6K2 WILD-TYPE    112     87     90    181
D1102V7, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             9              87
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR6K2 MUTATED        1      2      7      1      0      1      4
  OR6K2 WILD-TYPE     59     48     42     39     63    124     95
D1102V8, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6K2 MUTATED        5      1      1      8
  OR6K2 WILD-TYPE    125     77     67    188
D1102V9, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR6K2 MUTATED        2      3      1      1      5      1      1      0
  OR6K2 WILD-TYPE     38     59     27     79     64     47     42     28
                 vv
clus              CLUS_9
  OR6K2 MUTATED        1
  OR6K2 WILD-TYPE     73
D1102V10, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6K2 MUTATED        0      0      0      2
  OR6K2 WILD-TYPE     33     31     27     17
D1102V11, multiclass
[1] "Remove cluster labels:" "OR6K2 MUTATED"         
clus
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6K2 MUTATED        2      0      0      0
  OR6K2 WILD-TYPE     52     10     24     22
D1102V12, multiclass
[1] "Remove cluster labels:" "OR6K2 MUTATED"         
clus
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 

Clustering(1103) Variable = ARAP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAP3 MUTATED        3      0      0      3
  ARAP3 WILD-TYPE     43     58     64     40
D1103V1, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARAP3 MUTATED        5      0      1
  ARAP3 WILD-TYPE     46     83     76
D1103V2, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAP3 MUTATED       17      3      1      2
  ARAP3 WILD-TYPE    161    180    100     18
D1103V3, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARAP3 MUTATED        8      1      8
  ARAP3 WILD-TYPE     79     79     92
D1103V4, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARAP3 MUTATED        1      5     12
  ARAP3 WILD-TYPE     88    155    126
D1103V5, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARAP3 MUTATED       11      5      2
  ARAP3 WILD-TYPE    171    128     70
D1103V6, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAP3 MUTATED        4      6      7      7
  ARAP3 WILD-TYPE    108     90     85    179
D1103V7, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARAP3 MUTATED        3      3      8      2      1      0      7
  ARAP3 WILD-TYPE     57     47     41     38     62    125     92
D1103V8, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAP3 MUTATED       10      3      0     10
  ARAP3 WILD-TYPE    120     75     68    186
D1103V9, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARAP3 MUTATED        2      5      1      1      8      2      2      1
  ARAP3 WILD-TYPE     38     57     27     79     61     46     41     27
                 vv
clus              CLUS_9
  ARAP3 MUTATED        1
  ARAP3 WILD-TYPE     73
D1103V10, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAP3 MUTATED        1      2      1      3
  ARAP3 WILD-TYPE     32     29     26     16
D1103V11, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAP3 MUTATED        5      0      0      2
  ARAP3 WILD-TYPE     49     10     24     20
D1103V12, multiclass
        clus
vv       ARAP3 MUTATED ARAP3 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1104) Variable = ZNF334 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        2      1      1      4
  ZNF334 WILD-TYPE     44     57     63     39
D1104V1, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED        4      2      2
  ZNF334 WILD-TYPE     47     81     75
D1104V2, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED       13      4      4      0
  ZNF334 WILD-TYPE    165    179     97     20
D1104V3, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              4              179
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED        8      2      3
  ZNF334 WILD-TYPE     79     78     97
D1104V4, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED        1      6      9
  ZNF334 WILD-TYPE     88    154    129
D1104V5, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED        7      7      2
  ZNF334 WILD-TYPE    175    126     70
D1104V6, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        2      3      7      9
  ZNF334 WILD-TYPE    110     93     85    177
D1104V7, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              7               85
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF334 MUTATED        2      2      2      3      2      1      9
  ZNF334 WILD-TYPE     58     48     47     37     61    124     90
D1104V8, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              9               90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        3      4      2     12
  ZNF334 WILD-TYPE    127     74     66    184
D1104V9, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF334 MUTATED        1      4      3      0      6      2      3      0
  ZNF334 WILD-TYPE     39     58     25     80     63     46     40     28
                  vv
clus               CLUS_9
  ZNF334 MUTATED        2
  ZNF334 WILD-TYPE     72
D1104V10, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              3               25
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              2               46
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        3      1      0      2
  ZNF334 WILD-TYPE     30     30     27     17
D1104V11, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        4      0      0      2
  ZNF334 WILD-TYPE     50     10     24     20
D1104V12, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1105) Variable = SIRT4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIRT4 MUTATED        1      0      0      3
  SIRT4 WILD-TYPE     45     58     64     40
D1105V1, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIRT4 MUTATED        2      1      1
  SIRT4 WILD-TYPE     49     82     76
D1105V2, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIRT4 MUTATED        7      0      0      0
  SIRT4 WILD-TYPE    171    183    101     20
D1105V3, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIRT4 MUTATED        1      0      2
  SIRT4 WILD-TYPE     86     80     98
D1105V4, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIRT4 MUTATED        1      2      3
  SIRT4 WILD-TYPE     88    158    135
D1105V5, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIRT4 MUTATED        4      1      1
  SIRT4 WILD-TYPE    178    132     71
D1105V6, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIRT4 MUTATED        0      2      1      4
  SIRT4 WILD-TYPE    112     94     91    182
D1105V7, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIRT4 MUTATED        1      0      3      0      0      1      2
  SIRT4 WILD-TYPE     59     50     46     40     63    124     97
D1105V8, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIRT4 MUTATED        2      1      0      3
  SIRT4 WILD-TYPE    128     77     68    193
D1105V9, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SIRT4 MUTATED        1      1      0      1      3      0      0      0
  SIRT4 WILD-TYPE     39     61     28     79     66     48     43     28
                 vv
clus              CLUS_9
  SIRT4 MUTATED        0
  SIRT4 WILD-TYPE     74
D1105V10, multiclass
        clus
vv       SIRT4 MUTATED SIRT4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIRT4 MUTATED        0      0      0      1
  SIRT4 WILD-TYPE     33     31     27     18
D1105V11, multiclass
[1] "Remove cluster labels:" "SIRT4 MUTATED"         
clus
  SIRT4 MUTATED SIRT4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-G5-6641 
"SIRT4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIRT4 MUTATED        1      0      0      0
  SIRT4 WILD-TYPE     53     10     24     22
D1105V12, multiclass
[1] "Remove cluster labels:" "SIRT4 MUTATED"         
clus
  SIRT4 MUTATED SIRT4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" "SIRT4 WILD-TYPE" 
     TCGA-G5-6641 
"SIRT4 WILD-TYPE" 

Clustering(1106) Variable = C1ORF35 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF35 MUTATED        1      0      0      0
  C1ORF35 WILD-TYPE     45     58     64     43
D1106V1, multiclass
[1] "Remove cluster labels:" "C1ORF35 MUTATED"       
clus
  C1ORF35 MUTATED C1ORF35 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF35 MUTATED        0      1      0
  C1ORF35 WILD-TYPE     51     82     77
D1106V2, multiclass
[1] "Remove cluster labels:" "C1ORF35 MUTATED"       
clus
  C1ORF35 MUTATED C1ORF35 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF35 MUTATED        4      1      0      0
  C1ORF35 WILD-TYPE    174    182    101     20
D1106V3, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF35 MUTATED        1      0      3
  C1ORF35 WILD-TYPE     86     80     97
D1106V4, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF35 MUTATED        1      0      2
  C1ORF35 WILD-TYPE     88    160    136
D1106V5, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               0               160
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF35 MUTATED        2      0      1
  C1ORF35 WILD-TYPE    180    133     71
D1106V6, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               0               133
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF35 MUTATED        0      2      2      1
  C1ORF35 WILD-TYPE    112     94     90    185
D1106V7, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF35 MUTATED        0      0      2      1      1      1      0
  C1ORF35 WILD-TYPE     60     50     47     39     62    124     99
D1106V8, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF35 MUTATED        3      1      0      1
  C1ORF35 WILD-TYPE    127     77     68    195
D1106V9, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1ORF35 MUTATED        1      2      0      0      1      0      0      0
  C1ORF35 WILD-TYPE     39     60     28     80     68     48     43     28
                   vv
clus                CLUS_9
  C1ORF35 MUTATED        1
  C1ORF35 WILD-TYPE     73
D1106V10, multiclass
        clus
vv       C1ORF35 MUTATED C1ORF35 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF35 MUTATED        0      0      0      1
  C1ORF35 WILD-TYPE     33     31     27     18
D1106V11, multiclass
[1] "Remove cluster labels:" "C1ORF35 MUTATED"       
clus
  C1ORF35 MUTATED C1ORF35 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-G5-6641 
"C1ORF35 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF35 MUTATED        1      0      0      0
  C1ORF35 WILD-TYPE     53     10     24     22
D1106V12, multiclass
[1] "Remove cluster labels:" "C1ORF35 MUTATED"       
clus
  C1ORF35 MUTATED C1ORF35 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" "C1ORF35 WILD-TYPE" 
       TCGA-G5-6641 
"C1ORF35 WILD-TYPE" 

Clustering(1107) Variable = PLK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        2      0      0      1
  PLK2 WILD-TYPE     44     58     64     42
D1107V1, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK2 MUTATED        1      1      1
  PLK2 WILD-TYPE     50     82     76
D1107V2, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        6      0      1      0
  PLK2 WILD-TYPE    172    183    100     20
D1107V3, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK2 MUTATED        0      1      3
  PLK2 WILD-TYPE     87     79     97
D1107V4, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK2 MUTATED        0      2      3
  PLK2 WILD-TYPE     89    158    135
D1107V5, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK2 MUTATED        3      2      0
  PLK2 WILD-TYPE    179    131     72
D1107V6, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        1      2      1      3
  PLK2 WILD-TYPE    111     94     91    183
D1107V7, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLK2 MUTATED        2      1      2      0      0      1      1
  PLK2 WILD-TYPE     58     49     47     40     63    124     98
D1107V8, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        2      0      1      4
  PLK2 WILD-TYPE    128     78     67    192
D1107V9, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PLK2 MUTATED        1      0      0      1      4      0      1      0      0
  PLK2 WILD-TYPE     39     62     28     79     65     48     42     28     74
D1107V10, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        0      0      0      0
  PLK2 WILD-TYPE     33     31     27     19
D1107V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        0      0      0      0
  PLK2 WILD-TYPE     54     10     24     22
D1107V12, multiclass

Clustering(1108) Variable = CCT4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT4 MUTATED        2      1      0      0
  CCT4 WILD-TYPE     44     57     64     43
D1108V1, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT4 MUTATED        1      2      0
  CCT4 WILD-TYPE     50     81     77
D1108V2, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT4 MUTATED        7      7      0      0
  CCT4 WILD-TYPE    171    176    101     20
D1108V3, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            7            176
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT4 MUTATED        1      3      7
  CCT4 WILD-TYPE     86     77     93
D1108V4, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT4 MUTATED        4      2      6
  CCT4 WILD-TYPE     85    158    132
D1108V5, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            2            158
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCT4 MUTATED        7      2      3
  CCT4 WILD-TYPE    175    131     69
D1108V6, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT4 MUTATED        3      2      5      4
  CCT4 WILD-TYPE    109     94     87    182
D1108V7, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCT4 MUTATED        3      2      2      1      2      3      1
  CCT4 WILD-TYPE     57     48     47     39     61    122     98
D1108V8, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            3            122
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT4 MUTATED        6      2      2      4
  CCT4 WILD-TYPE    124     76     66    192
D1108V9, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CCT4 MUTATED        1      4      0      5      1      1      1      0      1
  CCT4 WILD-TYPE     39     58     28     75     68     47     42     28     73
D1108V10, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            5             75
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT4 MUTATED        0      0      1      2
  CCT4 WILD-TYPE     33     31     26     17
D1108V11, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT4 MUTATED        2      1      0      0
  CCT4 WILD-TYPE     52      9     24     22
D1108V12, multiclass
        clus
vv       CCT4 MUTATED CCT4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1109) Variable = MAP3K12 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K12 MUTATED        0      1      2      3
  MAP3K12 WILD-TYPE     46     57     62     40
D1109V1, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               2                62
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAP3K12 MUTATED        1      3      2
  MAP3K12 WILD-TYPE     50     80     75
D1109V2, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               3                80
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K12 MUTATED        9      3      1      1
  MAP3K12 WILD-TYPE    169    180    100     19
D1109V3, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAP3K12 MUTATED        1      1      6
  MAP3K12 WILD-TYPE     86     79     94
D1109V4, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAP3K12 MUTATED        3      6      3
  MAP3K12 WILD-TYPE     86    154    135
D1109V5, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               6               154
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAP3K12 MUTATED        3      6      3
  MAP3K12 WILD-TYPE    179    127     69
D1109V6, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               6               127
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K12 MUTATED        1      5      3      5
  MAP3K12 WILD-TYPE    111     91     89    181
D1109V7, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP3K12 MUTATED        1      1      4      1      1      2      4
  MAP3K12 WILD-TYPE     59     49     45     39     62    123     95
D1109V8, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K12 MUTATED        6      0      1      7
  MAP3K12 WILD-TYPE    124     78     67    189
D1109V9, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP3K12 MUTATED        1      3      1      1      6      0      0      0
  MAP3K12 WILD-TYPE     39     59     27     79     63     48     43     28
                   vv
clus                CLUS_9
  MAP3K12 MUTATED        2
  MAP3K12 WILD-TYPE     72
D1109V10, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K12 MUTATED        0      1      0      4
  MAP3K12 WILD-TYPE     33     30     27     15
D1109V11, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K12 MUTATED        2      0      3      0
  MAP3K12 WILD-TYPE     52     10     21     22
D1109V12, multiclass
        clus
vv       MAP3K12 MUTATED MAP3K12 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1110) Variable = FGD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD3 MUTATED        3      0      0      0
  FGD3 WILD-TYPE     43     58     64     43
D1110V1, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD3 MUTATED        2      0      1
  FGD3 WILD-TYPE     49     83     76
D1110V2, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD3 MUTATED        9      0      3      1
  FGD3 WILD-TYPE    169    183     98     19
D1110V3, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD3 MUTATED        8      0      3
  FGD3 WILD-TYPE     79     80     97
D1110V4, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD3 MUTATED        2      2      8
  FGD3 WILD-TYPE     87    158    130
D1110V5, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD3 MUTATED        8      1      3
  FGD3 WILD-TYPE    174    132     69
D1110V6, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            1            132
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD3 MUTATED        1      5      5      3
  FGD3 WILD-TYPE    111     91     87    183
D1110V7, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGD3 MUTATED        1      0      8      1      1      1      2
  FGD3 WILD-TYPE     59     50     41     39     62    124     97
D1110V8, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD3 MUTATED        8      2      0      4
  FGD3 WILD-TYPE    122     76     68    192
D1110V9, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FGD3 MUTATED        0      4      0      2      6      1      1      0      0
  FGD3 WILD-TYPE     40     58     28     78     63     47     42     28     74
D1110V10, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD3 MUTATED        2      1      0      2
  FGD3 WILD-TYPE     31     30     27     17
D1110V11, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD3 MUTATED        3      0      2      0
  FGD3 WILD-TYPE     51     10     22     22
D1110V12, multiclass
        clus
vv       FGD3 MUTATED FGD3 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1111) Variable = ACAT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAT2 MUTATED        1      0      0      1
  ACAT2 WILD-TYPE     45     58     64     42
D1111V1, multiclass
[1] "Remove cluster labels:" "ACAT2 MUTATED"         
clus
  ACAT2 MUTATED ACAT2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AY-4071 
"ACAT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACAT2 MUTATED        1      1      0
  ACAT2 WILD-TYPE     50     82     77
D1111V2, multiclass
[1] "Remove cluster labels:" "ACAT2 MUTATED"         
clus
  ACAT2 MUTATED ACAT2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" "ACAT2 WILD-TYPE" 
     TCGA-AY-4071 
"ACAT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAT2 MUTATED        6      0      2      1
  ACAT2 WILD-TYPE    172    183     99     19
D1111V3, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACAT2 MUTATED        3      2      2
  ACAT2 WILD-TYPE     84     78     98
D1111V4, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACAT2 MUTATED        1      4      2
  ACAT2 WILD-TYPE     88    156    136
D1111V5, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACAT2 MUTATED        2      4      1
  ACAT2 WILD-TYPE    180    129     71
D1111V6, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAT2 MUTATED        2      3      2      2
  ACAT2 WILD-TYPE    110     93     90    184
D1111V7, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACAT2 MUTATED        3      1      2      1      0      0      2
  ACAT2 WILD-TYPE     57     49     47     39     63    125     97
D1111V8, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAT2 MUTATED        6      1      0      2
  ACAT2 WILD-TYPE    124     77     68    194
D1111V9, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACAT2 MUTATED        2      1      1      3      2      0      0      0
  ACAT2 WILD-TYPE     38     61     27     77     67     48     43     28
                 vv
clus              CLUS_9
  ACAT2 MUTATED        0
  ACAT2 WILD-TYPE     74
D1111V10, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAT2 MUTATED        0      0      1      2
  ACAT2 WILD-TYPE     33     31     26     17
D1111V11, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAT2 MUTATED        1      0      1      1
  ACAT2 WILD-TYPE     53     10     23     21
D1111V12, multiclass
        clus
vv       ACAT2 MUTATED ACAT2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1112) Variable = PRRT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRT2 MUTATED        0      0      0      0
  PRRT2 WILD-TYPE     46     58     64     43
D1112V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRT2 MUTATED        0      0      0
  PRRT2 WILD-TYPE     51     83     77
D1112V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRT2 MUTATED        4      0      2      0
  PRRT2 WILD-TYPE    174    183     99     20
D1112V3, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRT2 MUTATED        1      0      5
  PRRT2 WILD-TYPE     86     80     95
D1112V4, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRT2 MUTATED        0      1      3
  PRRT2 WILD-TYPE     89    159    135
D1112V5, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRT2 MUTATED        4      0      0
  PRRT2 WILD-TYPE    178    133     72
D1112V6, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRT2 MUTATED        0      4      2      0
  PRRT2 WILD-TYPE    112     92     90    186
D1112V7, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRRT2 MUTATED        1      1      4      0      0      0      0
  PRRT2 WILD-TYPE     59     49     45     40     63    125     99
D1112V8, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRT2 MUTATED        4      0      1      1
  PRRT2 WILD-TYPE    126     78     67    195
D1112V9, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRRT2 MUTATED        1      1      0      1      2      0      1      0
  PRRT2 WILD-TYPE     39     61     28     79     67     48     42     28
                 vv
clus              CLUS_9
  PRRT2 MUTATED        0
  PRRT2 WILD-TYPE     74
D1112V10, multiclass
        clus
vv       PRRT2 MUTATED PRRT2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRT2 MUTATED        0      0      1      1
  PRRT2 WILD-TYPE     33     31     26     18
D1112V11, multiclass
[1] "Remove cluster labels:" "PRRT2 MUTATED"         
clus
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRT2 MUTATED        1      0      1      0
  PRRT2 WILD-TYPE     53     10     23     22
D1112V12, multiclass
[1] "Remove cluster labels:" "PRRT2 MUTATED"         
clus
  PRRT2 MUTATED PRRT2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6309 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" "PRRT2 WILD-TYPE" 

Clustering(1113) Variable = C14ORF50 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        2      1      0      2
  C14ORF50 WILD-TYPE     44     57     64     41
D1113V1, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF50 MUTATED        3      0      2
  C14ORF50 WILD-TYPE     48     83     75
D1113V2, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                0                 83
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        6      1      1      0
  C14ORF50 WILD-TYPE    172    182    100     20
D1113V3, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF50 MUTATED        0      0      3
  C14ORF50 WILD-TYPE     87     80     97
D1113V4, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF50 MUTATED        2      2      2
  C14ORF50 WILD-TYPE     87    158    136
D1113V5, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                2                158
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF50 MUTATED        2      1      3
  C14ORF50 WILD-TYPE    180    132     69
D1113V6, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                1                132
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        0      1      2      5
  C14ORF50 WILD-TYPE    112     95     90    181
D1113V7, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF50 MUTATED        0      0      3      0      0      2      3
  C14ORF50 WILD-TYPE     60     50     46     40     63    123     96
D1113V8, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        1      1      0      6
  C14ORF50 WILD-TYPE    129     77     68    190
D1113V9, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF50 MUTATED        0      1      0      1      3      0      0      1
  C14ORF50 WILD-TYPE     40     61     28     79     66     48     43     27
                    vv
clus                 CLUS_9
  C14ORF50 MUTATED        2
  C14ORF50 WILD-TYPE     72
D1113V10, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        0      0      0      1
  C14ORF50 WILD-TYPE     33     31     27     18
D1113V11, multiclass
[1] "Remove cluster labels:" "C14ORF50 MUTATED"      
clus
  C14ORF50 MUTATED C14ORF50 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-6748         TCGA-CL-5918 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-G5-6641 
"C14ORF50 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        1      0      0      0
  C14ORF50 WILD-TYPE     53     10     24     22
D1113V12, multiclass
[1] "Remove cluster labels:" "C14ORF50 MUTATED"      
clus
  C14ORF50 MUTATED C14ORF50 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-6748         TCGA-CL-5918 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" "C14ORF50 WILD-TYPE" 
        TCGA-G5-6641 
"C14ORF50 WILD-TYPE" 

Clustering(1114) Variable = KCNG4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNG4 MUTATED        0      0      0      2
  KCNG4 WILD-TYPE     46     58     64     41
D1114V1, multiclass
[1] "Remove cluster labels:" "KCNG4 MUTATED"         
clus
  KCNG4 MUTATED KCNG4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AY-4071 
"KCNG4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNG4 MUTATED        1      1      0
  KCNG4 WILD-TYPE     50     82     77
D1114V2, multiclass
[1] "Remove cluster labels:" "KCNG4 MUTATED"         
clus
  KCNG4 MUTATED KCNG4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" "KCNG4 WILD-TYPE" 
     TCGA-AY-4071 
"KCNG4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNG4 MUTATED        4      3      2      1
  KCNG4 WILD-TYPE    174    180     99     19
D1114V3, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNG4 MUTATED        2      1      5
  KCNG4 WILD-TYPE     85     79     95
D1114V4, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNG4 MUTATED        1      6      1
  KCNG4 WILD-TYPE     88    154    137
D1114V5, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNG4 MUTATED        2      6      0
  KCNG4 WILD-TYPE    180    127     72
D1114V6, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNG4 MUTATED        3      3      2      2
  KCNG4 WILD-TYPE    109     93     90    184
D1114V7, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNG4 MUTATED        3      2      3      0      0      0      2
  KCNG4 WILD-TYPE     57     48     46     40     63    125     97
D1114V8, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNG4 MUTATED        6      0      2      2
  KCNG4 WILD-TYPE    124     78     66    194
D1114V9, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCNG4 MUTATED        2      1      1      2      1      0      2      0
  KCNG4 WILD-TYPE     38     61     27     78     68     48     41     28
                 vv
clus              CLUS_9
  KCNG4 MUTATED        1
  KCNG4 WILD-TYPE     73
D1114V10, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNG4 MUTATED        3      0      1      2
  KCNG4 WILD-TYPE     30     31     26     17
D1114V11, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNG4 MUTATED        3      0      2      1
  KCNG4 WILD-TYPE     51     10     22     21
D1114V12, multiclass
        clus
vv       KCNG4 MUTATED KCNG4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1115) Variable = ANKRD23 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        0      0      0      0
  ANKRD23 WILD-TYPE     46     58     64     43
D1115V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        0      0      0
  ANKRD23 WILD-TYPE     51     83     77
D1115V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        4      1      0      0
  ANKRD23 WILD-TYPE    174    182    101     20
D1115V3, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        2      0      3
  ANKRD23 WILD-TYPE     85     80     97
D1115V4, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        1      0      3
  ANKRD23 WILD-TYPE     88    160    135
D1115V5, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               0               160
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        2      1      1
  ANKRD23 WILD-TYPE    180    132     71
D1115V6, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        0      4      1      0
  ANKRD23 WILD-TYPE    112     92     91    186
D1115V7, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD23 MUTATED        0      0      4      1      0      0      0
  ANKRD23 WILD-TYPE     60     50     45     39     63    125     99
D1115V8, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        3      0      1      1
  ANKRD23 WILD-TYPE    127     78     67    195
D1115V9, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD23 MUTATED        0      0      0      0      3      0      2      0
  ANKRD23 WILD-TYPE     40     62     28     80     66     48     41     28
                   vv
clus                CLUS_9
  ANKRD23 MUTATED        0
  ANKRD23 WILD-TYPE     74
D1115V10, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        0      0      0      1
  ANKRD23 WILD-TYPE     33     31     27     18
D1115V11, multiclass
[1] "Remove cluster labels:" "ANKRD23 MUTATED"       
clus
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-G5-6641 
"ANKRD23 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        1      0      0      0
  ANKRD23 WILD-TYPE     53     10     24     22
D1115V12, multiclass
[1] "Remove cluster labels:" "ANKRD23 MUTATED"       
clus
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235 
"ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" "ANKRD23 WILD-TYPE" 
       TCGA-G5-6641 
"ANKRD23 WILD-TYPE" 

Clustering(1116) Variable = KIAA0556 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0556 MUTATED        3      0      0      3
  KIAA0556 WILD-TYPE     43     58     64     40
D1116V1, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0556 MUTATED        4      0      2
  KIAA0556 WILD-TYPE     47     83     75
D1116V2, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                0                 83
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0556 MUTATED       16      4      3      1
  KIAA0556 WILD-TYPE    162    179     98     19
D1116V3, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1               16                162
  CLUS_2                4                179
  CLUS_3                3                 98
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0556 MUTATED        9      2      6
  KIAA0556 WILD-TYPE     78     78     94
D1116V4, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                9                 78
  CLUS_2                2                 78
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0556 MUTATED        3      3     11
  KIAA0556 WILD-TYPE     86    157    127
D1116V5, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                3                157
  CLUS_3               11                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0556 MUTATED       11      5      1
  KIAA0556 WILD-TYPE    171    128     71
D1116V6, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1               11                171
  CLUS_2                5                128
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0556 MUTATED        5      5      7      7
  KIAA0556 WILD-TYPE    107     91     85    179
D1116V7, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                5                107
  CLUS_2                5                 91
  CLUS_3                7                 85
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0556 MUTATED        3      2     10      2      1      1      5
  KIAA0556 WILD-TYPE     57     48     39     38     62    124     94
D1116V8, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                2                 48
  CLUS_3               10                 39
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0556 MUTATED        9      6      2      6
  KIAA0556 WILD-TYPE    121     72     66    190
D1116V9, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                9                121
  CLUS_2                6                 72
  CLUS_3                2                 66
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0556 MUTATED        2      8      1      1      5      3      1      0
  KIAA0556 WILD-TYPE     38     54     27     79     64     45     42     28
                    vv
clus                 CLUS_9
  KIAA0556 MUTATED        2
  KIAA0556 WILD-TYPE     72
D1116V10, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                8                 54
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                3                 45
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0556 MUTATED        1      1      1      2
  KIAA0556 WILD-TYPE     32     30     26     17
D1116V11, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0556 MUTATED        4      0      0      1
  KIAA0556 WILD-TYPE     50     10     24     21
D1116V12, multiclass
        clus
vv       KIAA0556 MUTATED KIAA0556 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1117) Variable = SLC25A44 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A44 MUTATED        1      0      0      1
  SLC25A44 WILD-TYPE     45     58     64     42
D1117V1, multiclass
[1] "Remove cluster labels:" "SLC25A44 MUTATED"      
clus
  SLC25A44 MUTATED SLC25A44 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3968         TCGA-AA-3971 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A44 MUTATED        2      0      0
  SLC25A44 WILD-TYPE     49     83     77
D1117V2, multiclass
[1] "Remove cluster labels:" "SLC25A44 MUTATED"      
clus
  SLC25A44 MUTATED SLC25A44 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3968         TCGA-AA-3971 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"SLC25A44 WILD-TYPE" "SLC25A44 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A44 MUTATED        2      2      1      0
  SLC25A44 WILD-TYPE    176    181    100     20
D1117V3, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                2                176
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A44 MUTATED        1      2      0
  SLC25A44 WILD-TYPE     86     78    100
D1117V4, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                2                 78
  CLUS_3                0                100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A44 MUTATED        0      2      2
  SLC25A44 WILD-TYPE     89    158    136
D1117V5, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A44 MUTATED        2      2      0
  SLC25A44 WILD-TYPE    180    131     72
D1117V6, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A44 MUTATED        2      0      1      2
  SLC25A44 WILD-TYPE    110     96     91    184
D1117V7, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                0                 96
  CLUS_3                1                 91
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A44 MUTATED        1      1      0      0      1      0      2
  SLC25A44 WILD-TYPE     59     49     49     40     62    125     97
D1117V8, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                0                 49
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A44 MUTATED        3      0      0      1
  SLC25A44 WILD-TYPE    127     78     68    195
D1117V9, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC25A44 MUTATED        0      1      0      1      1      1      0      0
  SLC25A44 WILD-TYPE     40     61     28     79     68     47     43     28
                    vv
clus                 CLUS_9
  SLC25A44 MUTATED        0
  SLC25A44 WILD-TYPE     74
D1117V10, multiclass
        clus
vv       SLC25A44 MUTATED SLC25A44 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                1                 68
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A44 MUTATED        0      0      0      0
  SLC25A44 WILD-TYPE     33     31     27     19
D1117V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A44 MUTATED        0      0      0      0
  SLC25A44 WILD-TYPE     54     10     24     22
D1117V12, multiclass

Clustering(1118) Variable = VPS13C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13C MUTATED        2      0      3      7
  VPS13C WILD-TYPE     44     58     61     36
D1118V1, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              3               61
  CLUS_4              7               36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13C MUTATED        5      4      3
  VPS13C WILD-TYPE     46     79     74
D1118V2, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              5               46
  CLUS_2              4               79
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13C MUTATED       21      4      3      0
  VPS13C WILD-TYPE    157    179     98     20
D1118V3, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1             21              157
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13C MUTATED        5      1      8
  VPS13C WILD-TYPE     82     79     92
D1118V4, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13C MUTATED        4     11      8
  VPS13C WILD-TYPE     85    149    130
D1118V5, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              4               85
  CLUS_2             11              149
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13C MUTATED       10     10      3
  VPS13C WILD-TYPE    172    123     69
D1118V6, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1             10              172
  CLUS_2             10              123
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13C MUTATED        2      8      5     13
  VPS13C WILD-TYPE    110     88     87    173
D1118V7, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4             13              173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VPS13C MUTATED        2      2      5      1      3      3     12
  VPS13C WILD-TYPE     58     48     44     39     60    122     87
D1118V8, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              3              122
  CLUS_7             12               87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13C MUTATED        7      4      0     16
  VPS13C WILD-TYPE    123     74     68    180
D1118V9, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4             16              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VPS13C MUTATED        3      4      2      4     10      0      0      0
  VPS13C WILD-TYPE     37     58     26     76     59     48     43     28
                  vv
clus               CLUS_9
  VPS13C MUTATED        4
  VPS13C WILD-TYPE     70
D1118V10, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              3               37
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              4               76
  CLUS_5             10               59
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13C MUTATED        1      2      0      0
  VPS13C WILD-TYPE     32     29     27     19
D1118V11, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13C MUTATED        2      1      0      0
  VPS13C WILD-TYPE     52      9     24     22
D1118V12, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1119) Variable = PGAP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGAP3 MUTATED        1      1      0      1
  PGAP3 WILD-TYPE     45     57     64     42
D1119V1, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGAP3 MUTATED        2      0      1
  PGAP3 WILD-TYPE     49     83     76
D1119V2, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGAP3 MUTATED        5      1      1      1
  PGAP3 WILD-TYPE    173    182    100     19
D1119V3, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGAP3 MUTATED        2      1      2
  PGAP3 WILD-TYPE     85     79     98
D1119V4, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGAP3 MUTATED        1      3      2
  PGAP3 WILD-TYPE     88    157    136
D1119V5, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGAP3 MUTATED        3      1      2
  PGAP3 WILD-TYPE    179    132     70
D1119V6, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGAP3 MUTATED        1      3      2      2
  PGAP3 WILD-TYPE    111     93     90    184
D1119V7, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PGAP3 MUTATED        0      0      3      1      1      1      2
  PGAP3 WILD-TYPE     60     50     46     39     62    124     97
D1119V8, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGAP3 MUTATED        2      3      0      3
  PGAP3 WILD-TYPE    128     75     68    193
D1119V9, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PGAP3 MUTATED        0      3      0      1      3      0      0      0
  PGAP3 WILD-TYPE     40     59     28     79     66     48     43     28
                 vv
clus              CLUS_9
  PGAP3 MUTATED        1
  PGAP3 WILD-TYPE     73
D1119V10, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGAP3 MUTATED        0      1      1      2
  PGAP3 WILD-TYPE     33     30     26     17
D1119V11, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGAP3 MUTATED        1      1      1      1
  PGAP3 WILD-TYPE     53      9     23     21
D1119V12, multiclass
        clus
vv       PGAP3 MUTATED PGAP3 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1120) Variable = PARP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        1      0      0      1
  PARP1 WILD-TYPE     45     58     64     42
D1120V1, multiclass
[1] "Remove cluster labels:" "PARP1 MUTATED"         
clus
  PARP1 MUTATED PARP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AY-4071 
"PARP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARP1 MUTATED        1      1      0
  PARP1 WILD-TYPE     50     82     77
D1120V2, multiclass
[1] "Remove cluster labels:" "PARP1 MUTATED"         
clus
  PARP1 MUTATED PARP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" "PARP1 WILD-TYPE" 
     TCGA-AY-4071 
"PARP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED       11      1      1      2
  PARP1 WILD-TYPE    167    182    100     18
D1120V3, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARP1 MUTATED        5      2      4
  PARP1 WILD-TYPE     82     78     96
D1120V4, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARP1 MUTATED        3      4      6
  PARP1 WILD-TYPE     86    156    132
D1120V5, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PARP1 MUTATED        7      4      2
  PARP1 WILD-TYPE    175    129     70
D1120V6, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        2      6      4      3
  PARP1 WILD-TYPE    110     90     88    183
D1120V7, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARP1 MUTATED        0      1      5      1      4      0      4
  PARP1 WILD-TYPE     60     49     44     39     59    125     95
D1120V8, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        5      3      1      6
  PARP1 WILD-TYPE    125     75     67    190
D1120V9, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PARP1 MUTATED        3      4      1      0      4      0      1      1
  PARP1 WILD-TYPE     37     58     27     80     65     48     42     27
                 vv
clus              CLUS_9
  PARP1 MUTATED        1
  PARP1 WILD-TYPE     73
D1120V10, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        3      0      0      1
  PARP1 WILD-TYPE     30     31     27     18
D1120V11, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP1 MUTATED        2      0      1      1
  PARP1 WILD-TYPE     52     10     23     21
D1120V12, multiclass
        clus
vv       PARP1 MUTATED PARP1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1121) Variable = EPC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC1 MUTATED        1      0      0      1
  EPC1 WILD-TYPE     45     58     64     42
D1121V1, multiclass
[1] "Remove cluster labels:" "EPC1 MUTATED"          
clus
  EPC1 MUTATED EPC1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AY-4071 
"EPC1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC1 MUTATED        1      1      0
  EPC1 WILD-TYPE     50     82     77
D1121V2, multiclass
[1] "Remove cluster labels:" "EPC1 MUTATED"          
clus
  EPC1 MUTATED EPC1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" "EPC1 WILD-TYPE" 
    TCGA-AY-4071 
"EPC1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC1 MUTATED        8      4      1      0
  EPC1 WILD-TYPE    170    179    100     20
D1121V3, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC1 MUTATED        4      2      5
  EPC1 WILD-TYPE     83     78     95
D1121V4, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC1 MUTATED        1      5      6
  EPC1 WILD-TYPE     88    155    132
D1121V5, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC1 MUTATED        7      5      0
  EPC1 WILD-TYPE    175    128     72
D1121V6, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC1 MUTATED        3      3      5      2
  EPC1 WILD-TYPE    109     93     87    184
D1121V7, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPC1 MUTATED        1      2      3      1      4      0      2
  EPC1 WILD-TYPE     59     48     46     39     59    125     97
D1121V8, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC1 MUTATED        6      4      1      2
  EPC1 WILD-TYPE    124     74     67    194
D1121V9, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EPC1 MUTATED        3      4      2      1      2      0      1      0      0
  EPC1 WILD-TYPE     37     58     26     79     67     48     42     28     74
D1121V10, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC1 MUTATED        2      1      0      2
  EPC1 WILD-TYPE     31     30     27     17
D1121V11, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC1 MUTATED        3      1      1      0
  EPC1 WILD-TYPE     51      9     23     22
D1121V12, multiclass
        clus
vv       EPC1 MUTATED EPC1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1122) Variable = ST6GALNAC3 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC3 MUTATED        0      0      0      2
  ST6GALNAC3 WILD-TYPE     46     58     64     41
D1122V1, multiclass
[1] "Remove cluster labels:" "ST6GALNAC3 MUTATED"    
clus
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                   2                  209 
          TCGA-A6-2672           TCGA-A6-2674           TCGA-A6-2676 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-A6-2677           TCGA-A6-2678           TCGA-A6-2683 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-A6-3807           TCGA-A6-3808           TCGA-A6-3809 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3514           TCGA-AA-3516 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3517           TCGA-AA-3518           TCGA-AA-3519 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3520           TCGA-AA-3521           TCGA-AA-3522 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3524           TCGA-AA-3525           TCGA-AA-3526 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3527           TCGA-AA-3529           TCGA-AA-3530 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3531           TCGA-AA-3532           TCGA-AA-3534 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3538           TCGA-AA-3542           TCGA-AA-3543 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3544           TCGA-AA-3548           TCGA-AA-3549 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3552           TCGA-AA-3553           TCGA-AA-3554 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3556           TCGA-AA-3558 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3560           TCGA-AA-3561           TCGA-AA-3562 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3664           TCGA-AA-3666           TCGA-AA-3667 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3672           TCGA-AA-3673           TCGA-AA-3678 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3680           TCGA-AA-3681 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3684           TCGA-AA-3685           TCGA-AA-3688 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3692           TCGA-AA-3693           TCGA-AA-3696 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3710           TCGA-AA-3715           TCGA-AA-3811 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3812           TCGA-AA-3814           TCGA-AA-3815 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3818           TCGA-AA-3819           TCGA-AA-3821 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3831           TCGA-AA-3833           TCGA-AA-3837 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3842           TCGA-AA-3844           TCGA-AA-3845 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3850 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3851           TCGA-AA-3852           TCGA-AA-3854 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3855           TCGA-AA-3856           TCGA-AA-3858 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3860           TCGA-AA-3861           TCGA-AA-3864 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3866           TCGA-AA-3867           TCGA-AA-3869 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3870           TCGA-AA-3872           TCGA-AA-3875 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3930           TCGA-AA-3939 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3941           TCGA-AA-3947           TCGA-AA-3949 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3950           TCGA-AA-3952           TCGA-AA-3955 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3956           TCGA-AA-3966           TCGA-AA-3968 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3971           TCGA-AA-3972           TCGA-AA-3973 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3975           TCGA-AA-3976           TCGA-AA-3977 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3979           TCGA-AA-3980           TCGA-AA-3982 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3984           TCGA-AA-3986           TCGA-AA-3989 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3994           TCGA-AA-A004           TCGA-AA-A00A 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00O           TCGA-AA-A00Q           TCGA-AA-A00R 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00U           TCGA-AA-A00W           TCGA-AA-A00Z 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A010           TCGA-AA-A017           TCGA-AA-A01D 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A01F           TCGA-AA-A01G           TCGA-AA-A01I 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A01K           TCGA-AA-A01Q           TCGA-AA-A024 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A029           TCGA-AA-A02F           TCGA-AA-A02H 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A02J           TCGA-AA-A02W           TCGA-AF-2689 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AF-2691           TCGA-AF-2692           TCGA-AF-3400 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AF-3913           TCGA-AG-3574           TCGA-AG-3575 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3578           TCGA-AG-3580           TCGA-AG-3581 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3582           TCGA-AG-3583           TCGA-AG-3584 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3586           TCGA-AG-3587           TCGA-AG-3593 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3594           TCGA-AG-3598           TCGA-AG-3599 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3600           TCGA-AG-3601           TCGA-AG-3602 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3605           TCGA-AG-3608           TCGA-AG-3609 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3611           TCGA-AG-3612           TCGA-AG-3726 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3881 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3882           TCGA-AG-3883           TCGA-AG-3885 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3887           TCGA-AG-3890           TCGA-AG-3892 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3893           TCGA-AG-3894           TCGA-AG-3896 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3898           TCGA-AG-3901           TCGA-AG-3902 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3909           TCGA-AG-3999           TCGA-AG-4001 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-4005           TCGA-AG-4007           TCGA-AG-4008 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-4015           TCGA-AG-A008           TCGA-AG-A00C 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A00H           TCGA-AG-A00Y           TCGA-AG-A011 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A014           TCGA-AG-A015           TCGA-AG-A016 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A01L           TCGA-AG-A025           TCGA-AG-A026 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A02G           TCGA-AG-A02X           TCGA-AG-A032 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AY-4070           TCGA-AY-4071 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC3 MUTATED        1      0      1
  ST6GALNAC3 WILD-TYPE     50     83     76
D1122V2, multiclass
[1] "Remove cluster labels:" "ST6GALNAC3 MUTATED"    
clus
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                   2                  209 
          TCGA-A6-2672           TCGA-A6-2674           TCGA-A6-2676 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-A6-2677           TCGA-A6-2678           TCGA-A6-2683 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-A6-3807           TCGA-A6-3808           TCGA-A6-3809 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3514           TCGA-AA-3516 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3517           TCGA-AA-3518           TCGA-AA-3519 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3520           TCGA-AA-3521           TCGA-AA-3522 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3524           TCGA-AA-3525           TCGA-AA-3526 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3527           TCGA-AA-3529           TCGA-AA-3530 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3531           TCGA-AA-3532           TCGA-AA-3534 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3538           TCGA-AA-3542           TCGA-AA-3543 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3544           TCGA-AA-3548           TCGA-AA-3549 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3552           TCGA-AA-3553           TCGA-AA-3554 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3556           TCGA-AA-3558 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3560           TCGA-AA-3561           TCGA-AA-3562 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3664           TCGA-AA-3666           TCGA-AA-3667 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3672           TCGA-AA-3673           TCGA-AA-3678 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3680           TCGA-AA-3681 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3684           TCGA-AA-3685           TCGA-AA-3688 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3692           TCGA-AA-3693           TCGA-AA-3696 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3710           TCGA-AA-3715           TCGA-AA-3811 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3812           TCGA-AA-3814           TCGA-AA-3815 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3818           TCGA-AA-3819           TCGA-AA-3821 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3831           TCGA-AA-3833           TCGA-AA-3837 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3842           TCGA-AA-3844           TCGA-AA-3845 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3850 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3851           TCGA-AA-3852           TCGA-AA-3854 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3855           TCGA-AA-3856           TCGA-AA-3858 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3860           TCGA-AA-3861           TCGA-AA-3864 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3866           TCGA-AA-3867           TCGA-AA-3869 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3870           TCGA-AA-3872           TCGA-AA-3875 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3930           TCGA-AA-3939 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3941           TCGA-AA-3947           TCGA-AA-3949 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3950           TCGA-AA-3952           TCGA-AA-3955 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3956           TCGA-AA-3966           TCGA-AA-3968 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3971           TCGA-AA-3972           TCGA-AA-3973 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3975           TCGA-AA-3976           TCGA-AA-3977 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3979           TCGA-AA-3980           TCGA-AA-3982 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3984           TCGA-AA-3986           TCGA-AA-3989 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-3994           TCGA-AA-A004           TCGA-AA-A00A 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00O           TCGA-AA-A00Q           TCGA-AA-A00R 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A00U           TCGA-AA-A00W           TCGA-AA-A00Z 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A010           TCGA-AA-A017           TCGA-AA-A01D 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A01F           TCGA-AA-A01G           TCGA-AA-A01I 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A01K           TCGA-AA-A01Q           TCGA-AA-A024 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A029           TCGA-AA-A02F           TCGA-AA-A02H 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AA-A02J           TCGA-AA-A02W           TCGA-AF-2689 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AF-2691           TCGA-AF-2692           TCGA-AF-3400 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AF-3913           TCGA-AG-3574           TCGA-AG-3575 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3578           TCGA-AG-3580           TCGA-AG-3581 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3582           TCGA-AG-3583           TCGA-AG-3584 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3586           TCGA-AG-3587           TCGA-AG-3593 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3594           TCGA-AG-3598           TCGA-AG-3599 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3600           TCGA-AG-3601           TCGA-AG-3602 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3605           TCGA-AG-3608           TCGA-AG-3609 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3611           TCGA-AG-3612           TCGA-AG-3726 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3881 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3882           TCGA-AG-3883           TCGA-AG-3885 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3887           TCGA-AG-3890           TCGA-AG-3892 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3893           TCGA-AG-3894           TCGA-AG-3896 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3898           TCGA-AG-3901           TCGA-AG-3902 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-3909           TCGA-AG-3999           TCGA-AG-4001 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-4005           TCGA-AG-4007           TCGA-AG-4008 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-4015           TCGA-AG-A008           TCGA-AG-A00C 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A00H           TCGA-AG-A00Y           TCGA-AG-A011 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A014           TCGA-AG-A015           TCGA-AG-A016 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A01L           TCGA-AG-A025           TCGA-AG-A026 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AG-A02G           TCGA-AG-A02X           TCGA-AG-A032 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-AY-4070           TCGA-AY-4071 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC3 MUTATED        9      3      1      0
  ST6GALNAC3 WILD-TYPE    169    180    100     20
D1122V3, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  9                  169
  CLUS_2                  3                  180
  CLUS_3                  1                  100
  CLUS_4                  0                   20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC3 MUTATED        6      2      2
  ST6GALNAC3 WILD-TYPE     81     78     98
D1122V4, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  6                   81
  CLUS_2                  2                   78
  CLUS_3                  2                   98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC3 MUTATED        2      4      7
  ST6GALNAC3 WILD-TYPE     87    156    131
D1122V5, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  2                   87
  CLUS_2                  4                  156
  CLUS_3                  7                  131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC3 MUTATED        8      4      1
  ST6GALNAC3 WILD-TYPE    174    129     71
D1122V6, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  8                  174
  CLUS_2                  4                  129
  CLUS_3                  1                   71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC3 MUTATED        2      1      8      2
  ST6GALNAC3 WILD-TYPE    110     95     84    184
D1122V7, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  2                  110
  CLUS_2                  1                   95
  CLUS_3                  8                   84
  CLUS_4                  2                  184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ST6GALNAC3 MUTATED        3      0      5      0      4      0      1
  ST6GALNAC3 WILD-TYPE     57     50     44     40     59    125     98
D1122V8, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  3                   57
  CLUS_2                  0                   50
  CLUS_3                  5                   44
  CLUS_4                  0                   40
  CLUS_5                  4                   59
  CLUS_6                  0                  125
  CLUS_7                  1                   98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC3 MUTATED        5      5      0      2
  ST6GALNAC3 WILD-TYPE    125     73     68    194
D1122V9, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  5                  125
  CLUS_2                  5                   73
  CLUS_3                  0                   68
  CLUS_4                  2                  194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ST6GALNAC3 MUTATED        2      4      0      2      2      0      1      1
  ST6GALNAC3 WILD-TYPE     38     58     28     78     67     48     42     27
                      vv
clus                   CLUS_9
  ST6GALNAC3 MUTATED        0
  ST6GALNAC3 WILD-TYPE     74
D1122V10, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  2                   38
  CLUS_2                  4                   58
  CLUS_3                  0                   28
  CLUS_4                  2                   78
  CLUS_5                  2                   67
  CLUS_6                  0                   48
  CLUS_7                  1                   42
  CLUS_8                  1                   27
  CLUS_9                  0                   74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC3 MUTATED        1      2      0      1
  ST6GALNAC3 WILD-TYPE     32     29     27     18
D1122V11, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  1                   32
  CLUS_2                  2                   29
  CLUS_3                  0                   27
  CLUS_4                  1                   18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC3 MUTATED        4      0      0      0
  ST6GALNAC3 WILD-TYPE     50     10     24     22
D1122V12, multiclass
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  CLUS_1                  4                   50
  CLUS_2                  0                   10
  CLUS_3                  0                   24
  CLUS_4                  0                   22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1123) Variable = BRSK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        5      0      1      2
  BRSK1 WILD-TYPE     41     58     63     41
D1123V1, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED        7      0      1
  BRSK1 WILD-TYPE     44     83     76
D1123V2, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED       12      1      4      1
  BRSK1 WILD-TYPE    166    182     97     19
D1123V3, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED        1      3      6
  BRSK1 WILD-TYPE     86     77     94
D1123V4, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED        4      5      4
  BRSK1 WILD-TYPE     85    155    134
D1123V5, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             5             155
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED        4      4      5
  BRSK1 WILD-TYPE    178    129     67
D1123V6, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        3      6      1      8
  BRSK1 WILD-TYPE    109     90     91    178
D1123V7, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             1              91
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRSK1 MUTATED        2      2      4      1      1      1      7
  BRSK1 WILD-TYPE     58     48     45     39     62    124     92
D1123V8, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        6      0      2     10
  BRSK1 WILD-TYPE    124     78     66    186
D1123V9, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BRSK1 MUTATED        0      1      0      3     11      0      2      0
  BRSK1 WILD-TYPE     40     61     28     77     58     48     41     28
                 vv
clus              CLUS_9
  BRSK1 MUTATED        1
  BRSK1 WILD-TYPE     73
D1123V10, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5            11              58
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        1      0      0      2
  BRSK1 WILD-TYPE     32     31     27     17
D1123V11, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        1      0      1      1
  BRSK1 WILD-TYPE     53     10     23     21
D1123V12, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1124) Variable = FAM91A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM91A1 MUTATED        1      0      0      2
  FAM91A1 WILD-TYPE     45     58     64     41
D1124V1, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM91A1 MUTATED        1      1      1
  FAM91A1 WILD-TYPE     50     82     76
D1124V2, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM91A1 MUTATED        7      4      0      0
  FAM91A1 WILD-TYPE    171    179    101     20
D1124V3, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM91A1 MUTATED        3      1      5
  FAM91A1 WILD-TYPE     84     79     95
D1124V4, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM91A1 MUTATED        0      7      3
  FAM91A1 WILD-TYPE     89    153    135
D1124V5, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               7               153
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM91A1 MUTATED        3      7      0
  FAM91A1 WILD-TYPE    179    126     72
D1124V6, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               7               126
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM91A1 MUTATED        1      5      3      3
  FAM91A1 WILD-TYPE    111     91     89    183
D1124V7, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM91A1 MUTATED        2      4      2      0      2      0      2
  FAM91A1 WILD-TYPE     58     46     47     40     61    125     97
D1124V8, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               4                46
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM91A1 MUTATED        4      2      2      4
  FAM91A1 WILD-TYPE    126     76     66    192
D1124V9, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM91A1 MUTATED        2      2      1      2      3      0      1      0
  FAM91A1 WILD-TYPE     38     60     27     78     66     48     42     28
                   vv
clus                CLUS_9
  FAM91A1 MUTATED        1
  FAM91A1 WILD-TYPE     73
D1124V10, multiclass
        clus
vv       FAM91A1 MUTATED FAM91A1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM91A1 MUTATED        1      0      0      1
  FAM91A1 WILD-TYPE     32     31     27     18
D1124V11, multiclass
[1] "Remove cluster labels:" "FAM91A1 MUTATED"       
clus
  FAM91A1 MUTATED FAM91A1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-4110 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-5403 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM91A1 MUTATED        1      0      1      0
  FAM91A1 WILD-TYPE     53     10     23     22
D1124V12, multiclass
[1] "Remove cluster labels:" "FAM91A1 MUTATED"       
clus
  FAM91A1 MUTATED FAM91A1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-4110 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-5403 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" "FAM91A1 WILD-TYPE" 

Clustering(1125) Variable = FAM119A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM119A MUTATED        1      0      0      2
  FAM119A WILD-TYPE     45     58     64     41
D1125V1, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM119A MUTATED        2      0      1
  FAM119A WILD-TYPE     49     83     76
D1125V2, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM119A MUTATED        5      1      0      0
  FAM119A WILD-TYPE    173    182    101     20
D1125V3, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               5               173
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM119A MUTATED        1      0      2
  FAM119A WILD-TYPE     86     80     98
D1125V4, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM119A MUTATED        0      2      1
  FAM119A WILD-TYPE     89    158    137
D1125V5, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM119A MUTATED        1      2      0
  FAM119A WILD-TYPE    181    131     72
D1125V6, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               1               181
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM119A MUTATED        1      1      1      3
  FAM119A WILD-TYPE    111     95     91    183
D1125V7, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM119A MUTATED        2      1      1      0      0      0      2
  FAM119A WILD-TYPE     58     49     48     40     63    125     97
D1125V8, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM119A MUTATED        2      1      0      2
  FAM119A WILD-TYPE    128     77     68    194
D1125V9, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM119A MUTATED        1      1      0      1      2      0      0      0
  FAM119A WILD-TYPE     39     61     28     79     67     48     43     28
                   vv
clus                CLUS_9
  FAM119A MUTATED        0
  FAM119A WILD-TYPE     74
D1125V10, multiclass
        clus
vv       FAM119A MUTATED FAM119A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM119A MUTATED        0      0      0      0
  FAM119A WILD-TYPE     33     31     27     19
D1125V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM119A MUTATED        0      0      0      0
  FAM119A WILD-TYPE     54     10     24     22
D1125V12, multiclass

Clustering(1126) Variable = ZKSCAN2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN2 MUTATED        2      0      0      4
  ZKSCAN2 WILD-TYPE     44     58     64     39
D1126V1, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN2 MUTATED        5      0      1
  ZKSCAN2 WILD-TYPE     46     83     76
D1126V2, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN2 MUTATED        8      3      6      0
  ZKSCAN2 WILD-TYPE    170    180     95     20
D1126V3, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               3               180
  CLUS_3               6                95
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN2 MUTATED        4      2      5
  ZKSCAN2 WILD-TYPE     83     78     95
D1126V4, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN2 MUTATED        2      2      6
  ZKSCAN2 WILD-TYPE     87    158    132
D1126V5, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN2 MUTATED        5      2      3
  ZKSCAN2 WILD-TYPE    177    131     69
D1126V6, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               2               131
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN2 MUTATED        4      5      2      6
  ZKSCAN2 WILD-TYPE    108     91     90    180
D1126V7, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               5                91
  CLUS_3               2                90
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZKSCAN2 MUTATED        2      2      2      2      3      0      6
  ZKSCAN2 WILD-TYPE     58     48     47     38     60    125     93
D1126V8, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN2 MUTATED        5      1      3      7
  ZKSCAN2 WILD-TYPE    125     77     65    189
D1126V9, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               1                77
  CLUS_3               3                65
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZKSCAN2 MUTATED        3      2      2      1      4      0      2      0
  ZKSCAN2 WILD-TYPE     37     60     26     79     65     48     41     28
                   vv
clus                CLUS_9
  ZKSCAN2 MUTATED        2
  ZKSCAN2 WILD-TYPE     72
D1126V10, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN2 MUTATED        1      0      3      1
  ZKSCAN2 WILD-TYPE     32     31     24     18
D1126V11, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               3                24
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN2 MUTATED        1      1      2      1
  ZKSCAN2 WILD-TYPE     53      9     22     21
D1126V12, multiclass
        clus
vv       ZKSCAN2 MUTATED ZKSCAN2 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1127) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        0      0      0      1
  HLA-B WILD-TYPE     46     58     64     42
D1127V1, multiclass
[1] "Remove cluster labels:" "HLA-B MUTATED"         
clus
  HLA-B MUTATED HLA-B WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        1      0      0
  HLA-B WILD-TYPE     50     83     77
D1127V2, multiclass
[1] "Remove cluster labels:" "HLA-B MUTATED"         
clus
  HLA-B MUTATED HLA-B WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED       11      0      0      1
  HLA-B WILD-TYPE    167    183    101     19
D1127V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            11             167
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        3      1      7
  HLA-B WILD-TYPE     84     79     93
D1127V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        0      6      5
  HLA-B WILD-TYPE     89    154    133
D1127V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        5      6      0
  HLA-B WILD-TYPE    177    127     72
D1127V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        1      7      3      1
  HLA-B WILD-TYPE    111     89     89    185
D1127V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HLA-B MUTATED        1      2      5      3      0      0      1
  HLA-B WILD-TYPE     59     48     44     37     63    125     98
D1127V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        6      1      0      5
  HLA-B WILD-TYPE    124     77     68    191
D1127V9, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HLA-B MUTATED        4      2      2      0      4      0      0      0
  HLA-B WILD-TYPE     36     60     26     80     65     48     43     28
                 vv
clus              CLUS_9
  HLA-B MUTATED        0
  HLA-B WILD-TYPE     74
D1127V10, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        1      0      0      1
  HLA-B WILD-TYPE     32     31     27     18
D1127V11, multiclass
[1] "Remove cluster labels:" "HLA-B MUTATED"         
clus
  HLA-B MUTATED HLA-B WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        2      0      0      0
  HLA-B WILD-TYPE     52     10     24     22
D1127V12, multiclass
[1] "Remove cluster labels:" "HLA-B MUTATED"         
clus
  HLA-B MUTATED HLA-B WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 

Clustering(1128) Variable = NHLRC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        1      0      0      0
  NHLRC2 WILD-TYPE     45     58     64     43
D1128V1, multiclass
[1] "Remove cluster labels:" "NHLRC2 MUTATED"        
clus
  NHLRC2 MUTATED NHLRC2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC2 MUTATED        0      1      0
  NHLRC2 WILD-TYPE     51     82     77
D1128V2, multiclass
[1] "Remove cluster labels:" "NHLRC2 MUTATED"        
clus
  NHLRC2 MUTATED NHLRC2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NHLRC2 WILD-TYPE" "NHLRC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        7      1      1      0
  NHLRC2 WILD-TYPE    171    182    100     20
D1128V3, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC2 MUTATED        4      0      3
  NHLRC2 WILD-TYPE     83     80     97
D1128V4, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC2 MUTATED        0      7      1
  NHLRC2 WILD-TYPE     89    153    137
D1128V5, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC2 MUTATED        1      6      1
  NHLRC2 WILD-TYPE    181    127     71
D1128V6, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        1      4      1      3
  NHLRC2 WILD-TYPE    111     92     91    183
D1128V7, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NHLRC2 MUTATED        2      1      2      0      0      1      3
  NHLRC2 WILD-TYPE     58     49     47     40     63    124     96
D1128V8, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        5      0      0      4
  NHLRC2 WILD-TYPE    125     78     68    192
D1128V9, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NHLRC2 MUTATED        0      1      0      2      4      0      1      0
  NHLRC2 WILD-TYPE     40     61     28     78     65     48     42     28
                  vv
clus               CLUS_9
  NHLRC2 MUTATED        1
  NHLRC2 WILD-TYPE     73
D1128V10, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        0      0      1      3
  NHLRC2 WILD-TYPE     33     31     26     16
D1128V11, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        1      0      3      0
  NHLRC2 WILD-TYPE     53     10     21     22
D1128V12, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1129) Variable = BST2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BST2 MUTATED        1      0      0      0
  BST2 WILD-TYPE     45     58     64     43
D1129V1, multiclass
[1] "Remove cluster labels:" "BST2 MUTATED"          
clus
  BST2 MUTATED BST2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3837 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BST2 MUTATED        1      0      0
  BST2 WILD-TYPE     50     83     77
D1129V2, multiclass
[1] "Remove cluster labels:" "BST2 MUTATED"          
clus
  BST2 MUTATED BST2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3837 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BST2 MUTATED        5      0      1      0
  BST2 WILD-TYPE    173    183    100     20
D1129V3, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BST2 MUTATED        2      0      3
  BST2 WILD-TYPE     85     80     97
D1129V4, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BST2 MUTATED        1      1      4
  BST2 WILD-TYPE     88    159    134
D1129V5, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BST2 MUTATED        6      0      0
  BST2 WILD-TYPE    176    133     72
D1129V6, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            0            133
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BST2 MUTATED        0      3      2      1
  BST2 WILD-TYPE    112     93     90    185
D1129V7, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BST2 MUTATED        0      2      3      0      0      0      1
  BST2 WILD-TYPE     60     48     46     40     63    125     98
D1129V8, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BST2 MUTATED        4      1      0      1
  BST2 WILD-TYPE    126     77     68    195
D1129V9, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BST2 MUTATED        2      2      0      0      1      0      0      1      0
  BST2 WILD-TYPE     38     60     28     80     68     48     43     27     74
D1129V10, multiclass
        clus
vv       BST2 MUTATED BST2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BST2 MUTATED        0      0      0      1
  BST2 WILD-TYPE     33     31     27     18
D1129V11, multiclass
[1] "Remove cluster labels:" "BST2 MUTATED"          
clus
  BST2 MUTATED BST2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-G5-6641 
"BST2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BST2 MUTATED        1      0      0      0
  BST2 WILD-TYPE     53     10     24     22
D1129V12, multiclass
[1] "Remove cluster labels:" "BST2 MUTATED"          
clus
  BST2 MUTATED BST2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" "BST2 WILD-TYPE" 
    TCGA-G5-6641 
"BST2 WILD-TYPE" 

Clustering(1130) Variable = VASH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        0      0      0      0
  VASH1 WILD-TYPE     46     58     64     43
D1130V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        0      0      0
  VASH1 WILD-TYPE     51     83     77
D1130V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        5      0      0      0
  VASH1 WILD-TYPE    173    183    101     20
D1130V3, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        0      0      5
  VASH1 WILD-TYPE     87     80     95
D1130V4, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        0      3      2
  VASH1 WILD-TYPE     89    157    136
D1130V5, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        3      2      0
  VASH1 WILD-TYPE    179    131     72
D1130V6, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        0      3      2      0
  VASH1 WILD-TYPE    112     93     90    186
D1130V7, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VASH1 MUTATED        0      0      5      0      0      0      0
  VASH1 WILD-TYPE     60     50     44     40     63    125     99
D1130V8, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        4      0      0      1
  VASH1 WILD-TYPE    126     78     68    195
D1130V9, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VASH1 MUTATED        1      1      0      0      3      0      0      0
  VASH1 WILD-TYPE     39     61     28     80     66     48     43     28
                 vv
clus              CLUS_9
  VASH1 MUTATED        0
  VASH1 WILD-TYPE     74
D1130V10, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        0      0      0      0
  VASH1 WILD-TYPE     33     31     27     19
D1130V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        0      0      0      0
  VASH1 WILD-TYPE     54     10     24     22
D1130V12, multiclass

Clustering(1131) Variable = CT47B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CT47B1 MUTATED        0      0      0      0
  CT47B1 WILD-TYPE     46     58     64     43
D1131V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CT47B1 MUTATED        0      0      0
  CT47B1 WILD-TYPE     51     83     77
D1131V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CT47B1 MUTATED        2      4      2      0
  CT47B1 WILD-TYPE    176    179     99     20
D1131V3, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CT47B1 MUTATED        3      2      3
  CT47B1 WILD-TYPE     84     78     97
D1131V4, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CT47B1 MUTATED        1      2      4
  CT47B1 WILD-TYPE     88    158    134
D1131V5, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CT47B1 MUTATED        6      1      0
  CT47B1 WILD-TYPE    176    132     72
D1131V6, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CT47B1 MUTATED        2      2      4      0
  CT47B1 WILD-TYPE    110     94     88    186
D1131V7, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CT47B1 MUTATED        1      1      2      2      2      0      0
  CT47B1 WILD-TYPE     59     49     47     38     61    125     99
D1131V8, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CT47B1 MUTATED        4      3      1      0
  CT47B1 WILD-TYPE    126     75     67    196
D1131V9, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CT47B1 MUTATED        1      4      0      1      1      0      1      0
  CT47B1 WILD-TYPE     39     58     28     79     68     48     42     28
                  vv
clus               CLUS_9
  CT47B1 MUTATED        0
  CT47B1 WILD-TYPE     74
D1131V10, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CT47B1 MUTATED        1      1      1      1
  CT47B1 WILD-TYPE     32     30     26     18
D1131V11, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CT47B1 MUTATED        3      1      0      0
  CT47B1 WILD-TYPE     51      9     24     22
D1131V12, multiclass
        clus
vv       CT47B1 MUTATED CT47B1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1132) Variable = ZNF619 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF619 MUTATED        2      0      0      2
  ZNF619 WILD-TYPE     44     58     64     41
D1132V1, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF619 MUTATED        3      1      0
  ZNF619 WILD-TYPE     48     82     77
D1132V2, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF619 MUTATED       11      0      0      0
  ZNF619 WILD-TYPE    167    183    101     20
D1132V3, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF619 MUTATED        4      0      2
  ZNF619 WILD-TYPE     83     80     98
D1132V4, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF619 MUTATED        0      4      5
  ZNF619 WILD-TYPE     89    156    133
D1132V5, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF619 MUTATED        4      5      0
  ZNF619 WILD-TYPE    178    128     72
D1132V6, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF619 MUTATED        0      2      3      6
  ZNF619 WILD-TYPE    112     94     89    180
D1132V7, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF619 MUTATED        0      1      4      0      0      0      6
  ZNF619 WILD-TYPE     60     49     45     40     63    125     93
D1132V8, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF619 MUTATED        1      2      0      7
  ZNF619 WILD-TYPE    129     76     68    189
D1132V9, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF619 MUTATED        0      2      1      0      4      0      0      1
  ZNF619 WILD-TYPE     40     60     27     80     65     48     43     27
                  vv
clus               CLUS_9
  ZNF619 MUTATED        2
  ZNF619 WILD-TYPE     72
D1132V10, multiclass
        clus
vv       ZNF619 MUTATED ZNF619 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF619 MUTATED        1      0      0      0
  ZNF619 WILD-TYPE     32     31     27     19
D1132V11, multiclass
[1] "Remove cluster labels:" "ZNF619 MUTATED"        
clus
  ZNF619 MUTATED ZNF619 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF619 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF619 MUTATED        1      0      0      0
  ZNF619 WILD-TYPE     53     10     24     22
D1132V12, multiclass
[1] "Remove cluster labels:" "ZNF619 MUTATED"        
clus
  ZNF619 MUTATED ZNF619 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" "ZNF619 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF619 WILD-TYPE" 

Clustering(1133) Variable = LIX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIX1 MUTATED        1      0      0      3
  LIX1 WILD-TYPE     45     58     64     40
D1133V1, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIX1 MUTATED        2      1      1
  LIX1 WILD-TYPE     49     82     76
D1133V2, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIX1 MUTATED        8      1      0      2
  LIX1 WILD-TYPE    170    182    101     18
D1133V3, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIX1 MUTATED        3      1      3
  LIX1 WILD-TYPE     84     79     97
D1133V4, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIX1 MUTATED        1      5      4
  LIX1 WILD-TYPE     88    155    134
D1133V5, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIX1 MUTATED        4      4      2
  LIX1 WILD-TYPE    178    129     70
D1133V6, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIX1 MUTATED        1      4      2      4
  LIX1 WILD-TYPE    111     92     90    182
D1133V7, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LIX1 MUTATED        1      2      3      2      0      0      3
  LIX1 WILD-TYPE     59     48     46     38     63    125     96
D1133V8, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIX1 MUTATED        4      2      0      5
  LIX1 WILD-TYPE    126     76     68    191
D1133V9, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LIX1 MUTATED        1      2      2      0      4      0      2      0      0
  LIX1 WILD-TYPE     39     60     26     80     65     48     41     28     74
D1133V10, multiclass
        clus
vv       LIX1 MUTATED LIX1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIX1 MUTATED        0      1      0      1
  LIX1 WILD-TYPE     33     30     27     18
D1133V11, multiclass
[1] "Remove cluster labels:" "LIX1 MUTATED"          
clus
  LIX1 MUTATED LIX1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6603 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIX1 MUTATED        2      0      0      0
  LIX1 WILD-TYPE     52     10     24     22
D1133V12, multiclass
[1] "Remove cluster labels:" "LIX1 MUTATED"          
clus
  LIX1 MUTATED LIX1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6603 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" "LIX1 WILD-TYPE" 

Clustering(1134) Variable = BCLAF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        2      0      2      4
  BCLAF1 WILD-TYPE     44     58     62     39
D1134V1, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        2      4      2
  BCLAF1 WILD-TYPE     49     79     75
D1134V2, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              4               79
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED       13      6      2      1
  BCLAF1 WILD-TYPE    165    177     99     19
D1134V3, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              6              177
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        7      3      4
  BCLAF1 WILD-TYPE     80     77     96
D1134V4, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        2     10      7
  BCLAF1 WILD-TYPE     87    150    131
D1134V5, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2             10              150
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED        7      8      4
  BCLAF1 WILD-TYPE    175    125     68
D1134V6, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              8              125
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      4      6      8
  BCLAF1 WILD-TYPE    109     92     86    178
D1134V7, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              6               86
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCLAF1 MUTATED        1      2      4      3      4      3      4
  BCLAF1 WILD-TYPE     59     48     45     37     59    122     95
D1134V8, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              3               37
  CLUS_5              4               59
  CLUS_6              3              122
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      6      5      7
  BCLAF1 WILD-TYPE    127     72     63    189
D1134V9, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              6               72
  CLUS_3              5               63
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BCLAF1 MUTATED        3      3      1      2      3      1      3      0
  BCLAF1 WILD-TYPE     37     59     27     78     66     47     40     28
                  vv
clus               CLUS_9
  BCLAF1 MUTATED        5
  BCLAF1 WILD-TYPE     69
D1134V10, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              5               69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      2      1      2
  BCLAF1 WILD-TYPE     30     29     26     17
D1134V11, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        3      0      2      3
  BCLAF1 WILD-TYPE     51     10     22     19
D1134V12, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1135) Variable = OR2Y1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2Y1 MUTATED        0      1      0      1
  OR2Y1 WILD-TYPE     46     57     64     42
D1135V1, multiclass
[1] "Remove cluster labels:" "OR2Y1 MUTATED"         
clus
  OR2Y1 MUTATED OR2Y1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3602 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AY-4071 
"OR2Y1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2Y1 MUTATED        1      1      0
  OR2Y1 WILD-TYPE     50     82     77
D1135V2, multiclass
[1] "Remove cluster labels:" "OR2Y1 MUTATED"         
clus
  OR2Y1 MUTATED OR2Y1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3602 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AY-4071 
"OR2Y1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2Y1 MUTATED        5      1      2      0
  OR2Y1 WILD-TYPE    173    182     99     20
D1135V3, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2Y1 MUTATED        0      1      5
  OR2Y1 WILD-TYPE     87     79     95
D1135V4, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2Y1 MUTATED        1      2      5
  OR2Y1 WILD-TYPE     88    158    133
D1135V5, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2Y1 MUTATED        5      2      1
  OR2Y1 WILD-TYPE    177    131     71
D1135V6, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2Y1 MUTATED        1      4      1      2
  OR2Y1 WILD-TYPE    111     92     91    184
D1135V7, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2Y1 MUTATED        1      0      5      0      0      1      1
  OR2Y1 WILD-TYPE     59     50     44     40     63    124     98
D1135V8, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2Y1 MUTATED        3      1      0      3
  OR2Y1 WILD-TYPE    127     77     68    193
D1135V9, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2Y1 MUTATED        0      1      0      1      3      1      1      0
  OR2Y1 WILD-TYPE     40     61     28     79     66     47     42     28
                 vv
clus              CLUS_9
  OR2Y1 MUTATED        0
  OR2Y1 WILD-TYPE     74
D1135V10, multiclass
        clus
vv       OR2Y1 MUTATED OR2Y1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2Y1 MUTATED        0      0      0      1
  OR2Y1 WILD-TYPE     33     31     27     18
D1135V11, multiclass
[1] "Remove cluster labels:" "OR2Y1 MUTATED"         
clus
  OR2Y1 MUTATED OR2Y1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-G5-6641 
"OR2Y1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2Y1 MUTATED        0      0      1      0
  OR2Y1 WILD-TYPE     54     10     23     22
D1135V12, multiclass
[1] "Remove cluster labels:" "OR2Y1 MUTATED"         
clus
  OR2Y1 MUTATED OR2Y1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" "OR2Y1 WILD-TYPE" 
     TCGA-G5-6641 
"OR2Y1 WILD-TYPE" 

Clustering(1136) Variable = KTN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTN1 MUTATED        3      0      1      3
  KTN1 WILD-TYPE     43     58     63     40
D1136V1, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KTN1 MUTATED        5      0      2
  KTN1 WILD-TYPE     46     83     75
D1136V2, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTN1 MUTATED       17      3      0      0
  KTN1 WILD-TYPE    161    180    101     20
D1136V3, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KTN1 MUTATED        3      3      6
  KTN1 WILD-TYPE     84     77     94
D1136V4, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            3             77
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KTN1 MUTATED        2      7      9
  KTN1 WILD-TYPE     87    153    129
D1136V5, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KTN1 MUTATED        6      8      4
  KTN1 WILD-TYPE    176    125     68
D1136V6, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            8            125
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTN1 MUTATED        3      6      4      7
  KTN1 WILD-TYPE    109     90     88    179
D1136V7, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            4             88
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KTN1 MUTATED        1      3      7      0      2      0      7
  KTN1 WILD-TYPE     59     47     42     40     61    125     92
D1136V8, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            7             42
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTN1 MUTATED        7      4      0      7
  KTN1 WILD-TYPE    123     74     68    189
D1136V9, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KTN1 MUTATED        1      5      2      0      8      0      0      0      2
  KTN1 WILD-TYPE     39     57     26     80     61     48     43     28     72
D1136V10, multiclass
        clus
vv       KTN1 MUTATED KTN1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            8             61
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTN1 MUTATED        0      1      0      1
  KTN1 WILD-TYPE     33     30     27     18
D1136V11, multiclass
[1] "Remove cluster labels:" "KTN1 MUTATED"          
clus
  KTN1 MUTATED KTN1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306     TCGA-G4-6309 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KTN1 MUTATED        0      1      1      0
  KTN1 WILD-TYPE     54      9     23     22
D1136V12, multiclass
[1] "Remove cluster labels:" "KTN1 MUTATED"          
clus
  KTN1 MUTATED KTN1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306     TCGA-G4-6309 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" "KTN1 WILD-TYPE" 

Clustering(1137) Variable = CBLL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        0      0      0      1
  CBLL1 WILD-TYPE     46     58     64     42
D1137V1, multiclass
[1] "Remove cluster labels:" "CBLL1 MUTATED"         
clus
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        0      0      1
  CBLL1 WILD-TYPE     51     83     76
D1137V2, multiclass
[1] "Remove cluster labels:" "CBLL1 MUTATED"         
clus
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        4      0      2      0
  CBLL1 WILD-TYPE    174    183     99     20
D1137V3, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        1      0      4
  CBLL1 WILD-TYPE     86     80     96
D1137V4, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        1      3      1
  CBLL1 WILD-TYPE     88    157    137
D1137V5, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        3      1      1
  CBLL1 WILD-TYPE    179    132     71
D1137V6, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        0      3      2      1
  CBLL1 WILD-TYPE    112     93     90    185
D1137V7, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBLL1 MUTATED        1      1      3      0      1      0      0
  CBLL1 WILD-TYPE     59     49     46     40     62    125     99
D1137V8, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        4      1      0      1
  CBLL1 WILD-TYPE    126     77     68    195
D1137V9, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CBLL1 MUTATED        1      1      1      0      3      0      0      0
  CBLL1 WILD-TYPE     39     61     27     80     66     48     43     28
                 vv
clus              CLUS_9
  CBLL1 MUTATED        0
  CBLL1 WILD-TYPE     74
D1137V10, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        0      1      0      1
  CBLL1 WILD-TYPE     33     30     27     18
D1137V11, multiclass
[1] "Remove cluster labels:" "CBLL1 MUTATED"         
clus
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              2             108 
     TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        2      0      0      0
  CBLL1 WILD-TYPE     52     10     24     22
D1137V12, multiclass
[1] "Remove cluster labels:" "CBLL1 MUTATED"         
clus
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              2             108 
     TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" "CBLL1 WILD-TYPE" 

Clustering(1138) Variable = CTSZ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSZ MUTATED        1      0      1      0
  CTSZ WILD-TYPE     45     58     63     43
D1138V1, multiclass
[1] "Remove cluster labels:" "CTSZ MUTATED"          
clus
  CTSZ MUTATED CTSZ WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AY-4071 
"CTSZ WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSZ MUTATED        1      1      0
  CTSZ WILD-TYPE     50     82     77
D1138V2, multiclass
[1] "Remove cluster labels:" "CTSZ MUTATED"          
clus
  CTSZ MUTATED CTSZ WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AY-4071 
"CTSZ WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSZ MUTATED        2      4      0      0
  CTSZ WILD-TYPE    176    179    101     20
D1138V3, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            2            176
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSZ MUTATED        1      3      0
  CTSZ WILD-TYPE     86     77    100
D1138V4, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSZ MUTATED        2      2      2
  CTSZ WILD-TYPE     87    158    136
D1138V5, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSZ MUTATED        4      0      2
  CTSZ WILD-TYPE    178    133     70
D1138V6, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            4            178
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSZ MUTATED        2      1      1      2
  CTSZ WILD-TYPE    110     95     91    184
D1138V7, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTSZ MUTATED        2      0      1      0      1      1      1
  CTSZ WILD-TYPE     58     50     48     40     62    124     98
D1138V8, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSZ MUTATED        1      3      1      1
  CTSZ WILD-TYPE    129     75     67    195
D1138V9, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            1            129
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CTSZ MUTATED        0      2      0      0      1      0      1      1      1
  CTSZ WILD-TYPE     40     60     28     80     68     48     42     27     73
D1138V10, multiclass
        clus
vv       CTSZ MUTATED CTSZ WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSZ MUTATED        0      1      0      0
  CTSZ WILD-TYPE     33     30     27     19
D1138V11, multiclass
[1] "Remove cluster labels:" "CTSZ MUTATED"          
clus
  CTSZ MUTATED CTSZ WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-G5-6641 
"CTSZ WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSZ MUTATED        0      1      0      0
  CTSZ WILD-TYPE     54      9     24     22
D1138V12, multiclass
[1] "Remove cluster labels:" "CTSZ MUTATED"          
clus
  CTSZ MUTATED CTSZ WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" "CTSZ WILD-TYPE" 
    TCGA-G5-6641 
"CTSZ WILD-TYPE" 

Clustering(1139) Variable = GLDN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLDN MUTATED        2      0      1      1
  GLDN WILD-TYPE     44     58     63     42
D1139V1, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLDN MUTATED        1      1      2
  GLDN WILD-TYPE     50     82     75
D1139V2, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLDN MUTATED        7      1      1      0
  GLDN WILD-TYPE    171    182    100     20
D1139V3, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLDN MUTATED        3      1      1
  GLDN WILD-TYPE     84     79     99
D1139V4, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLDN MUTATED        1      1      4
  GLDN WILD-TYPE     88    159    134
D1139V5, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLDN MUTATED        5      1      0
  GLDN WILD-TYPE    177    132     72
D1139V6, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLDN MUTATED        1      2      2      4
  GLDN WILD-TYPE    111     94     90    182
D1139V7, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLDN MUTATED        1      1      3      0      0      2      2
  GLDN WILD-TYPE     59     49     46     40     63    123     97
D1139V8, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLDN MUTATED        2      1      1      5
  GLDN WILD-TYPE    128     77     67    191
D1139V9, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GLDN MUTATED        1      3      1      1      1      0      1      0      1
  GLDN WILD-TYPE     39     59     27     79     68     48     42     28     73
D1139V10, multiclass
        clus
vv       GLDN MUTATED GLDN WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLDN MUTATED        0      0      1      1
  GLDN WILD-TYPE     33     31     26     18
D1139V11, multiclass
[1] "Remove cluster labels:" "GLDN MUTATED"          
clus
  GLDN MUTATED GLDN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLDN MUTATED        1      0      1      0
  GLDN WILD-TYPE     53     10     23     22
D1139V12, multiclass
[1] "Remove cluster labels:" "GLDN MUTATED"          
clus
  GLDN MUTATED GLDN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6309 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" "GLDN WILD-TYPE" 

Clustering(1140) Variable = RARRES3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARRES3 MUTATED        1      0      0      0
  RARRES3 WILD-TYPE     45     58     64     43
D1140V1, multiclass
[1] "Remove cluster labels:" "RARRES3 MUTATED"       
clus
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RARRES3 MUTATED        1      0      0
  RARRES3 WILD-TYPE     50     83     77
D1140V2, multiclass
[1] "Remove cluster labels:" "RARRES3 MUTATED"       
clus
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARRES3 MUTATED        2      1      1      1
  RARRES3 WILD-TYPE    176    182    100     19
D1140V3, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RARRES3 MUTATED        2      1      1
  RARRES3 WILD-TYPE     85     79     99
D1140V4, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RARRES3 MUTATED        1      1      3
  RARRES3 WILD-TYPE     88    159    135
D1140V5, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RARRES3 MUTATED        3      1      1
  RARRES3 WILD-TYPE    179    132     71
D1140V6, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARRES3 MUTATED        1      1      2      1
  RARRES3 WILD-TYPE    111     95     90    185
D1140V7, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RARRES3 MUTATED        0      0      2      0      2      0      1
  RARRES3 WILD-TYPE     60     50     47     40     61    125     98
D1140V8, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARRES3 MUTATED        3      1      0      1
  RARRES3 WILD-TYPE    127     77     68    195
D1140V9, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RARRES3 MUTATED        1      1      0      1      2      0      0      0
  RARRES3 WILD-TYPE     39     61     28     79     67     48     43     28
                   vv
clus                CLUS_9
  RARRES3 MUTATED        0
  RARRES3 WILD-TYPE     74
D1140V10, multiclass
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARRES3 MUTATED        1      0      0      1
  RARRES3 WILD-TYPE     32     31     27     18
D1140V11, multiclass
[1] "Remove cluster labels:" "RARRES3 MUTATED"       
clus
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AZ-4323        TCGA-AZ-4616 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1HA 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARRES3 MUTATED        1      0      1      0
  RARRES3 WILD-TYPE     53     10     23     22
D1140V12, multiclass
[1] "Remove cluster labels:" "RARRES3 MUTATED"       
clus
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AZ-4323        TCGA-AZ-4616 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1HA 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 

Clustering(1141) Variable = CBLN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        0      0      0      0
  CBLN3 WILD-TYPE     46     58     64     43
D1141V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        0      0      0
  CBLN3 WILD-TYPE     51     83     77
D1141V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        6      0      0      0
  CBLN3 WILD-TYPE    172    183    101     20
D1141V3, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        3      0      3
  CBLN3 WILD-TYPE     84     80     97
D1141V4, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        1      0      5
  CBLN3 WILD-TYPE     88    160    133
D1141V5, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        3      2      1
  CBLN3 WILD-TYPE    179    131     71
D1141V6, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        0      4      2      0
  CBLN3 WILD-TYPE    112     92     90    186
D1141V7, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CBLN3 MUTATED        1      0      2      2      1      0      0
  CBLN3 WILD-TYPE     59     50     47     38     62    125     99
D1141V8, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        5      1      0      0
  CBLN3 WILD-TYPE    125     77     68    196
D1141V9, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CBLN3 MUTATED        2      3      0      0      1      0      0      0
  CBLN3 WILD-TYPE     38     59     28     80     68     48     43     28
                 vv
clus              CLUS_9
  CBLN3 MUTATED        0
  CBLN3 WILD-TYPE     74
D1141V10, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        0      0      0      1
  CBLN3 WILD-TYPE     33     31     27     18
D1141V11, multiclass
[1] "Remove cluster labels:" "CBLN3 MUTATED"         
clus
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-G5-6641 
"CBLN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        1      0      0      0
  CBLN3 WILD-TYPE     53     10     24     22
D1141V12, multiclass
[1] "Remove cluster labels:" "CBLN3 MUTATED"         
clus
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" "CBLN3 WILD-TYPE" 
     TCGA-G5-6641 
"CBLN3 WILD-TYPE" 

Clustering(1142) Variable = LRRN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN3 MUTATED        6      1      1      1
  LRRN3 WILD-TYPE     40     57     63     42
D1142V1, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN3 MUTATED        7      1      1
  LRRN3 WILD-TYPE     44     82     76
D1142V2, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN3 MUTATED       16      5      2      0
  LRRN3 WILD-TYPE    162    178     99     20
D1142V3, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN3 MUTATED        4      3      6
  LRRN3 WILD-TYPE     83     77     94
D1142V4, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN3 MUTATED        6      8      8
  LRRN3 WILD-TYPE     83    152    130
D1142V5, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN3 MUTATED        9      8      5
  LRRN3 WILD-TYPE    173    125     67
D1142V6, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             8             125
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN3 MUTATED        2      5      6     10
  LRRN3 WILD-TYPE    110     91     86    176
D1142V7, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             6              86
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRN3 MUTATED        1      2      6      1      2      2      9
  LRRN3 WILD-TYPE     59     48     43     39     61    123     90
D1142V8, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN3 MUTATED        6      1      3     11
  LRRN3 WILD-TYPE    124     77     65    185
D1142V9, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRN3 MUTATED        1      1      1      3      5      0      3      3
  LRRN3 WILD-TYPE     39     61     27     77     64     48     40     25
                 vv
clus              CLUS_9
  LRRN3 MUTATED        4
  LRRN3 WILD-TYPE     70
D1142V10, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             3              25
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN3 MUTATED        1      0      0      2
  LRRN3 WILD-TYPE     32     31     27     17
D1142V11, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN3 MUTATED        2      0      0      1
  LRRN3 WILD-TYPE     52     10     24     21
D1142V12, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1143) Variable = WDR5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5B MUTATED        1      2      0      1
  WDR5B WILD-TYPE     45     56     64     42
D1143V1, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR5B MUTATED        1      3      0
  WDR5B WILD-TYPE     50     80     77
D1143V2, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             1              50
  CLUS_2             3              80
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5B MUTATED        8      5      0      0
  WDR5B WILD-TYPE    170    178    101     20
D1143V3, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             8             170
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR5B MUTATED        5      3      1
  WDR5B WILD-TYPE     82     77     99
D1143V4, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR5B MUTATED        0      1     12
  WDR5B WILD-TYPE     89    159    126
D1143V5, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR5B MUTATED       11      2      0
  WDR5B WILD-TYPE    171    131     72
D1143V6, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1            11             171
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5B MUTATED        5      0      4      4
  WDR5B WILD-TYPE    107     96     88    182
D1143V7, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             5             107
  CLUS_2             0              96
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR5B MUTATED        2      2      1      0      4      1      3
  WDR5B WILD-TYPE     58     48     48     40     59    124     96
D1143V8, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5B MUTATED        2      4      4      2
  WDR5B WILD-TYPE    128     74     64    194
D1143V9, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             2             128
  CLUS_2             4              74
  CLUS_3             4              64
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR5B MUTATED        0      4      1      2      1      1      2      0
  WDR5B WILD-TYPE     40     58     27     78     68     47     41     28
                 vv
clus              CLUS_9
  WDR5B MUTATED        1
  WDR5B WILD-TYPE     73
D1143V10, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5B MUTATED        1      2      1      1
  WDR5B WILD-TYPE     32     29     26     18
D1143V11, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5B MUTATED        2      1      1      1
  WDR5B WILD-TYPE     52      9     23     21
D1143V12, multiclass
        clus
vv       WDR5B MUTATED WDR5B WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1144) Variable = CLDND1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDND1 MUTATED        1      0      0      1
  CLDND1 WILD-TYPE     45     58     64     42
D1144V1, multiclass
[1] "Remove cluster labels:" "CLDND1 MUTATED"        
clus
  CLDND1 MUTATED CLDND1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AY-4071 
"CLDND1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDND1 MUTATED        1      0      1
  CLDND1 WILD-TYPE     50     83     76
D1144V2, multiclass
[1] "Remove cluster labels:" "CLDND1 MUTATED"        
clus
  CLDND1 MUTATED CLDND1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AY-4071 
"CLDND1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDND1 MUTATED        6      2      2      0
  CLDND1 WILD-TYPE    172    181     99     20
D1144V3, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDND1 MUTATED        3      0      5
  CLDND1 WILD-TYPE     84     80     95
D1144V4, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDND1 MUTATED        1      3      5
  CLDND1 WILD-TYPE     88    157    133
D1144V5, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDND1 MUTATED        5      3      1
  CLDND1 WILD-TYPE    177    130     71
D1144V6, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDND1 MUTATED        0      3      4      3
  CLDND1 WILD-TYPE    112     93     88    183
D1144V7, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLDND1 MUTATED        2      1      2      1      2      0      2
  CLDND1 WILD-TYPE     58     49     47     39     61    125     97
D1144V8, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDND1 MUTATED        5      1      0      4
  CLDND1 WILD-TYPE    125     77     68    192
D1144V9, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLDND1 MUTATED        1      1      0      2      4      1      0      0
  CLDND1 WILD-TYPE     39     61     28     78     65     47     43     28
                  vv
clus               CLUS_9
  CLDND1 MUTATED        1
  CLDND1 WILD-TYPE     73
D1144V10, multiclass
        clus
vv       CLDND1 MUTATED CLDND1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDND1 MUTATED        0      0      1      1
  CLDND1 WILD-TYPE     33     31     26     18
D1144V11, multiclass
[1] "Remove cluster labels:" "CLDND1 MUTATED"        
clus
  CLDND1 MUTATED CLDND1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6141       TCGA-A6-6142 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDND1 MUTATED        1      0      1      0
  CLDND1 WILD-TYPE     53     10     23     22
D1144V12, multiclass
[1] "Remove cluster labels:" "CLDND1 MUTATED"        
clus
  CLDND1 MUTATED CLDND1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6141       TCGA-A6-6142 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" "CLDND1 WILD-TYPE" 

Clustering(1145) Variable = MERTK MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MERTK MUTATED        2      1      0      2
  MERTK WILD-TYPE     44     57     64     41
D1145V1, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MERTK MUTATED        2      2      1
  MERTK WILD-TYPE     49     81     76
D1145V2, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MERTK MUTATED       10      4      4      2
  MERTK WILD-TYPE    168    179     97     18
D1145V3, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1            10             168
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MERTK MUTATED        8      2      5
  MERTK WILD-TYPE     79     78     95
D1145V4, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MERTK MUTATED        2      6     11
  MERTK WILD-TYPE     87    154    127
D1145V5, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MERTK MUTATED       12      6      1
  MERTK WILD-TYPE    170    127     71
D1145V6, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1            12             170
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MERTK MUTATED        2      5      7      6
  MERTK WILD-TYPE    110     91     85    180
D1145V7, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MERTK MUTATED        2      1      6      2      4      2      3
  MERTK WILD-TYPE     58     49     43     38     59    123     96
D1145V8, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MERTK MUTATED        7      2      3      7
  MERTK WILD-TYPE    123     76     65    189
D1145V9, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             3              65
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MERTK MUTATED        3      2      0      0      6      0      4      2
  MERTK WILD-TYPE     37     60     28     80     63     48     39     26
                 vv
clus              CLUS_9
  MERTK MUTATED        2
  MERTK WILD-TYPE     72
D1145V10, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             4              39
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MERTK MUTATED        2      0      1      3
  MERTK WILD-TYPE     31     31     26     16
D1145V11, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MERTK MUTATED        3      0      1      2
  MERTK WILD-TYPE     51     10     23     20
D1145V12, multiclass
        clus
vv       MERTK MUTATED MERTK WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1146) Variable = PRMT8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        2      2      1      0
  PRMT8 WILD-TYPE     44     56     63     43
D1146V1, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        2      1      2
  PRMT8 WILD-TYPE     49     82     75
D1146V2, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        9      3      1      1
  PRMT8 WILD-TYPE    169    180    100     19
D1146V3, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        3      0      6
  PRMT8 WILD-TYPE     84     80     94
D1146V4, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        1      4      5
  PRMT8 WILD-TYPE     88    156    133
D1146V5, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        4      4      2
  PRMT8 WILD-TYPE    178    129     70
D1146V6, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        0      7      2      5
  PRMT8 WILD-TYPE    112     89     90    181
D1146V7, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             7              89
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRMT8 MUTATED        0      3      4      1      0      2      4
  PRMT8 WILD-TYPE     60     47     45     39     63    123     95
D1146V8, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        4      1      1      8
  PRMT8 WILD-TYPE    126     77     67    188
D1146V9, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRMT8 MUTATED        1      1      0      1      7      0      1      0
  PRMT8 WILD-TYPE     39     61     28     79     62     48     42     28
                 vv
clus              CLUS_9
  PRMT8 MUTATED        3
  PRMT8 WILD-TYPE     71
D1146V10, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        2      0      1      1
  PRMT8 WILD-TYPE     31     31     26     18
D1146V11, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        3      0      1      0
  PRMT8 WILD-TYPE     51     10     23     22
D1146V12, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1147) Variable = TCEAL5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEAL5 MUTATED        0      0      0      0
  TCEAL5 WILD-TYPE     46     58     64     43
D1147V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEAL5 MUTATED        0      0      0
  TCEAL5 WILD-TYPE     51     83     77
D1147V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEAL5 MUTATED        3      1      1      0
  TCEAL5 WILD-TYPE    175    182    100     20
D1147V3, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEAL5 MUTATED        1      0      3
  TCEAL5 WILD-TYPE     86     80     97
D1147V4, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEAL5 MUTATED        1      2      2
  TCEAL5 WILD-TYPE     88    158    136
D1147V5, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEAL5 MUTATED        3      2      0
  TCEAL5 WILD-TYPE    179    131     72
D1147V6, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEAL5 MUTATED        0      2      3      0
  TCEAL5 WILD-TYPE    112     94     89    186
D1147V7, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCEAL5 MUTATED        0      2      2      0      1      0      0
  TCEAL5 WILD-TYPE     60     48     47     40     62    125     99
D1147V8, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEAL5 MUTATED        2      1      1      1
  TCEAL5 WILD-TYPE    128     77     67    195
D1147V9, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TCEAL5 MUTATED        0      2      0      0      1      0      1      1
  TCEAL5 WILD-TYPE     40     60     28     80     68     48     42     27
                  vv
clus               CLUS_9
  TCEAL5 MUTATED        0
  TCEAL5 WILD-TYPE     74
D1147V10, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEAL5 MUTATED        0      0      1      2
  TCEAL5 WILD-TYPE     33     31     26     17
D1147V11, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEAL5 MUTATED        1      0      2      0
  TCEAL5 WILD-TYPE     53     10     22     22
D1147V12, multiclass
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1148) Variable = OR9Q2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q2 MUTATED        2      0      0      1
  OR9Q2 WILD-TYPE     44     58     64     42
D1148V1, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q2 MUTATED        1      2      0
  OR9Q2 WILD-TYPE     50     81     77
D1148V2, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q2 MUTATED        9      2      3      0
  OR9Q2 WILD-TYPE    169    181     98     20
D1148V3, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q2 MUTATED        1      4      6
  OR9Q2 WILD-TYPE     86     76     94
D1148V4, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             4              76
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q2 MUTATED        2      6      4
  OR9Q2 WILD-TYPE     87    154    134
D1148V5, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q2 MUTATED        6      5      1
  OR9Q2 WILD-TYPE    176    128     71
D1148V6, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q2 MUTATED        5      4      1      4
  OR9Q2 WILD-TYPE    107     92     91    182
D1148V7, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR9Q2 MUTATED        3      2      3      0      2      1      3
  OR9Q2 WILD-TYPE     57     48     46     40     61    124     96
D1148V8, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q2 MUTATED        7      2      1      4
  OR9Q2 WILD-TYPE    123     76     67    192
D1148V9, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR9Q2 MUTATED        1      2      3      3      2      0      2      0
  OR9Q2 WILD-TYPE     39     60     25     77     67     48     41     28
                 vv
clus              CLUS_9
  OR9Q2 MUTATED        1
  OR9Q2 WILD-TYPE     73
D1148V10, multiclass
        clus
vv       OR9Q2 MUTATED OR9Q2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             3              77
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q2 MUTATED        1      1      0      0
  OR9Q2 WILD-TYPE     32     30     27     19
D1148V11, multiclass
[1] "Remove cluster labels:" "OR9Q2 MUTATED"         
clus
  OR9Q2 MUTATED OR9Q2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q2 MUTATED        1      1      0      0
  OR9Q2 WILD-TYPE     53      9     24     22
D1148V12, multiclass
[1] "Remove cluster labels:" "OR9Q2 MUTATED"         
clus
  OR9Q2 MUTATED OR9Q2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" "OR9Q2 WILD-TYPE" 

Clustering(1149) Variable = CTNNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA3 MUTATED        3      0      2      3
  CTNNA3 WILD-TYPE     43     58     62     40
D1149V1, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA3 MUTATED        5      1      2
  CTNNA3 WILD-TYPE     46     82     75
D1149V2, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA3 MUTATED       19      3      3      1
  CTNNA3 WILD-TYPE    159    180     98     19
D1149V3, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA3 MUTATED        4      1     12
  CTNNA3 WILD-TYPE     83     79     88
D1149V4, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3             12               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA3 MUTATED        5      6     10
  CTNNA3 WILD-TYPE     84    154    128
D1149V5, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              6              154
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA3 MUTATED       13      4      4
  CTNNA3 WILD-TYPE    169    129     68
D1149V6, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              4              129
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA3 MUTATED        2      8      8      8
  CTNNA3 WILD-TYPE    110     88     84    178
D1149V7, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              8               84
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTNNA3 MUTATED        2      4     11      1      0      1      7
  CTNNA3 WILD-TYPE     58     46     38     39     63    124     92
D1149V8, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3             11               38
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA3 MUTATED       10      4      1     10
  CTNNA3 WILD-TYPE    120     74     67    186
D1149V9, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CTNNA3 MUTATED        3      3      2      3      9      1      2      1
  CTNNA3 WILD-TYPE     37     59     26     77     60     47     41     27
                  vv
clus               CLUS_9
  CTNNA3 MUTATED        1
  CTNNA3 WILD-TYPE     73
D1149V10, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA3 MUTATED        2      0      0      3
  CTNNA3 WILD-TYPE     31     31     27     16
D1149V11, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA3 MUTATED        3      0      1      1
  CTNNA3 WILD-TYPE     51     10     23     21
D1149V12, multiclass
        clus
vv       CTNNA3 MUTATED CTNNA3 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1150) Variable = C14ORF39 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF39 MUTATED        1      0      0      2
  C14ORF39 WILD-TYPE     45     58     64     41
D1150V1, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF39 MUTATED        1      1      1
  C14ORF39 WILD-TYPE     50     82     76
D1150V2, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF39 MUTATED       11      5      0      0
  C14ORF39 WILD-TYPE    167    178    101     20
D1150V3, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1               11                167
  CLUS_2                5                178
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF39 MUTATED        7      2      5
  C14ORF39 WILD-TYPE     80     78     95
D1150V4, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                2                 78
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF39 MUTATED        1      8      6
  C14ORF39 WILD-TYPE     88    152    132
D1150V5, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                8                152
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF39 MUTATED        5      9      1
  C14ORF39 WILD-TYPE    177    124     71
D1150V6, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                9                124
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF39 MUTATED        4      3      6      4
  C14ORF39 WILD-TYPE    108     93     86    182
D1150V7, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                4                108
  CLUS_2                3                 93
  CLUS_3                6                 86
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF39 MUTATED        6      2      4      1      1      0      3
  C14ORF39 WILD-TYPE     54     48     45     39     62    125     96
D1150V8, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                6                 54
  CLUS_2                2                 48
  CLUS_3                4                 45
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF39 MUTATED        4      3      4      6
  C14ORF39 WILD-TYPE    126     75     64    190
D1150V9, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                3                 75
  CLUS_3                4                 64
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF39 MUTATED        0      4      1      2      3      0      5      0
  C14ORF39 WILD-TYPE     40     58     27     78     66     48     38     28
                    vv
clus                 CLUS_9
  C14ORF39 MUTATED        2
  C14ORF39 WILD-TYPE     72
D1150V10, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 58
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                5                 38
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF39 MUTATED        0      0      2      1
  C14ORF39 WILD-TYPE     33     31     25     18
D1150V11, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 31
  CLUS_3                2                 25
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF39 MUTATED        1      0      0      2
  C14ORF39 WILD-TYPE     53     10     24     20
D1150V12, multiclass
        clus
vv       C14ORF39 MUTATED C14ORF39 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1151) Variable = SAPS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS3 MUTATED        3      1      0      3
  SAPS3 WILD-TYPE     43     57     64     40
D1151V1, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS3 MUTATED        2      1      4
  SAPS3 WILD-TYPE     49     82     73
D1151V2, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS3 MUTATED       13      1      0      1
  SAPS3 WILD-TYPE    165    182    101     19
D1151V3, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS3 MUTATED        2      2      3
  SAPS3 WILD-TYPE     85     78     97
D1151V4, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS3 MUTATED        0      4      7
  SAPS3 WILD-TYPE     89    156    131
D1151V5, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAPS3 MUTATED        6      4      1
  SAPS3 WILD-TYPE    176    129     71
D1151V6, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS3 MUTATED        3      1      4      7
  SAPS3 WILD-TYPE    109     95     88    179
D1151V7, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAPS3 MUTATED        2      0      4      0      3      2      4
  SAPS3 WILD-TYPE     58     50     45     40     60    123     95
D1151V8, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS3 MUTATED        3      4      2      5
  SAPS3 WILD-TYPE    127     74     66    191
D1151V9, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SAPS3 MUTATED        1      4      1      1      3      2      2      0
  SAPS3 WILD-TYPE     39     58     27     79     66     46     41     28
                 vv
clus              CLUS_9
  SAPS3 MUTATED        0
  SAPS3 WILD-TYPE     74
D1151V10, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS3 MUTATED        1      1      0      2
  SAPS3 WILD-TYPE     32     30     27     17
D1151V11, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAPS3 MUTATED        3      1      0      0
  SAPS3 WILD-TYPE     51      9     24     22
D1151V12, multiclass
        clus
vv       SAPS3 MUTATED SAPS3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1152) Variable = TRIM31 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM31 MUTATED        1      0      0      1
  TRIM31 WILD-TYPE     45     58     64     42
D1152V1, multiclass
[1] "Remove cluster labels:" "TRIM31 MUTATED"        
clus
  TRIM31 MUTATED TRIM31 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3526 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679       TCGA-AA-3680 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685       TCGA-AA-3688 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696       TCGA-AA-3710 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AY-4071 
"TRIM31 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM31 MUTATED        2      0      0
  TRIM31 WILD-TYPE     49     83     77
D1152V2, multiclass
[1] "Remove cluster labels:" "TRIM31 MUTATED"        
clus
  TRIM31 MUTATED TRIM31 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3526 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679       TCGA-AA-3680 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685       TCGA-AA-3688 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696       TCGA-AA-3710 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AY-4071 
"TRIM31 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM31 MUTATED        4      1      0      0
  TRIM31 WILD-TYPE    174    182    101     20
D1152V3, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM31 MUTATED        1      1      1
  TRIM31 WILD-TYPE     86     79     99
D1152V4, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM31 MUTATED        1      2      2
  TRIM31 WILD-TYPE     88    158    136
D1152V5, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM31 MUTATED        3      2      0
  TRIM31 WILD-TYPE    179    131     72
D1152V6, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM31 MUTATED        0      3      1      1
  TRIM31 WILD-TYPE    112     93     91    185
D1152V7, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM31 MUTATED        1      1      1      0      0      0      2
  TRIM31 WILD-TYPE     59     49     48     40     63    125     97
D1152V8, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM31 MUTATED        2      0      0      3
  TRIM31 WILD-TYPE    128     78     68    193
D1152V9, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM31 MUTATED        1      1      0      0      1      0      0      1
  TRIM31 WILD-TYPE     39     61     28     80     68     48     43     27
                  vv
clus               CLUS_9
  TRIM31 MUTATED        1
  TRIM31 WILD-TYPE     73
D1152V10, multiclass
        clus
vv       TRIM31 MUTATED TRIM31 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM31 MUTATED        0      1      0      0
  TRIM31 WILD-TYPE     33     30     27     19
D1152V11, multiclass
[1] "Remove cluster labels:" "TRIM31 MUTATED"        
clus
  TRIM31 MUTATED TRIM31 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-G5-6641 
"TRIM31 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM31 MUTATED        1      0      0      0
  TRIM31 WILD-TYPE     53     10     24     22
D1152V12, multiclass
[1] "Remove cluster labels:" "TRIM31 MUTATED"        
clus
  TRIM31 MUTATED TRIM31 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" "TRIM31 WILD-TYPE" 
      TCGA-G5-6641 
"TRIM31 WILD-TYPE" 

Clustering(1153) Variable = PHF14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        2      0      0      2
  PHF14 WILD-TYPE     44     58     64     41
D1153V1, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        2      0      2
  PHF14 WILD-TYPE     49     83     75
D1153V2, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED       13      2      1      0
  PHF14 WILD-TYPE    165    181    100     20
D1153V3, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        5      1      6
  PHF14 WILD-TYPE     82     79     94
D1153V4, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        2      7      6
  PHF14 WILD-TYPE     87    153    132
D1153V5, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             7             153
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        8      5      2
  PHF14 WILD-TYPE    174    128     70
D1153V6, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        2      5      6      3
  PHF14 WILD-TYPE    110     91     86    183
D1153V7, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             6              86
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF14 MUTATED        2      3      6      2      1      0      2
  PHF14 WILD-TYPE     58     47     43     38     62    125     97
D1153V8, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        5      3      2      6
  PHF14 WILD-TYPE    125     75     66    190
D1153V9, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PHF14 MUTATED        1      5      0      2      5      1      1      1
  PHF14 WILD-TYPE     39     57     28     78     64     47     42     27
                 vv
clus              CLUS_9
  PHF14 MUTATED        0
  PHF14 WILD-TYPE     74
D1153V10, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        1      0      0      2
  PHF14 WILD-TYPE     32     31     27     17
D1153V11, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        1      0      1      1
  PHF14 WILD-TYPE     53     10     23     21
D1153V12, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1154) Variable = MOV10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10 MUTATED        2      0      1      1
  MOV10 WILD-TYPE     44     58     63     42
D1154V1, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOV10 MUTATED        2      1      1
  MOV10 WILD-TYPE     49     82     76
D1154V2, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10 MUTATED        8      3      3      0
  MOV10 WILD-TYPE    170    180     98     20
D1154V3, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOV10 MUTATED        4      1      5
  MOV10 WILD-TYPE     83     79     95
D1154V4, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOV10 MUTATED        2      6      3
  MOV10 WILD-TYPE     87    154    135
D1154V5, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOV10 MUTATED        6      3      2
  MOV10 WILD-TYPE    176    130     70
D1154V6, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10 MUTATED        3      4      3      4
  MOV10 WILD-TYPE    109     92     89    182
D1154V7, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MOV10 MUTATED        3      3      2      1      2      1      2
  MOV10 WILD-TYPE     57     47     47     39     61    124     97
D1154V8, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10 MUTATED        9      1      0      3
  MOV10 WILD-TYPE    121     77     68    193
D1154V9, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MOV10 MUTATED        5      1      1      2      2      1      1      0
  MOV10 WILD-TYPE     35     61     27     78     67     47     42     28
                 vv
clus              CLUS_9
  MOV10 MUTATED        0
  MOV10 WILD-TYPE     74
D1154V10, multiclass
        clus
vv       MOV10 MUTATED MOV10 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10 MUTATED        1      0      0      1
  MOV10 WILD-TYPE     32     31     27     18
D1154V11, multiclass
[1] "Remove cluster labels:" "MOV10 MUTATED"         
clus
  MOV10 MUTATED MOV10 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10 MUTATED        1      0      1      0
  MOV10 WILD-TYPE     53     10     23     22
D1154V12, multiclass
[1] "Remove cluster labels:" "MOV10 MUTATED"         
clus
  MOV10 MUTATED MOV10 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" "MOV10 WILD-TYPE" 

Clustering(1155) Variable = PTCH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH2 MUTATED        3      1      0      1
  PTCH2 WILD-TYPE     43     57     64     42
D1155V1, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH2 MUTATED        4      1      0
  PTCH2 WILD-TYPE     47     82     77
D1155V2, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH2 MUTATED       12      3      2      2
  PTCH2 WILD-TYPE    166    180     99     18
D1155V3, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH2 MUTATED        7      2      5
  PTCH2 WILD-TYPE     80     78     95
D1155V4, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH2 MUTATED        1      8      8
  PTCH2 WILD-TYPE     88    152    130
D1155V5, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCH2 MUTATED        8      6      3
  PTCH2 WILD-TYPE    174    127     69
D1155V6, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH2 MUTATED        3      6      4      6
  PTCH2 WILD-TYPE    109     90     88    180
D1155V7, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTCH2 MUTATED        1      2      7      1      1      1      6
  PTCH2 WILD-TYPE     59     48     42     39     62    124     93
D1155V8, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH2 MUTATED        8      2      2      6
  PTCH2 WILD-TYPE    122     76     66    190
D1155V9, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTCH2 MUTATED        1      4      1      2      7      1      1      0
  PTCH2 WILD-TYPE     39     58     27     78     62     47     42     28
                 vv
clus              CLUS_9
  PTCH2 MUTATED        1
  PTCH2 WILD-TYPE     73
D1155V10, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH2 MUTATED        1      0      0      3
  PTCH2 WILD-TYPE     32     31     27     16
D1155V11, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCH2 MUTATED        1      0      2      1
  PTCH2 WILD-TYPE     53     10     22     21
D1155V12, multiclass
        clus
vv       PTCH2 MUTATED PTCH2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1156) Variable = POMGNT1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        2      0      0      0
  POMGNT1 WILD-TYPE     44     58     64     43
D1156V1, multiclass
[1] "Remove cluster labels:" "POMGNT1 MUTATED"       
clus
  POMGNT1 MUTATED POMGNT1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3811        TCGA-AA-3812 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3968 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AY-4071 
"POMGNT1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POMGNT1 MUTATED        2      0      0
  POMGNT1 WILD-TYPE     49     83     77
D1156V2, multiclass
[1] "Remove cluster labels:" "POMGNT1 MUTATED"       
clus
  POMGNT1 MUTATED POMGNT1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3811        TCGA-AA-3812 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3968 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" "POMGNT1 WILD-TYPE" 
       TCGA-AY-4071 
"POMGNT1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        6      0      2      0
  POMGNT1 WILD-TYPE    172    183     99     20
D1156V3, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POMGNT1 MUTATED        3      1      2
  POMGNT1 WILD-TYPE     84     79     98
D1156V4, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POMGNT1 MUTATED        1      1      5
  POMGNT1 WILD-TYPE     88    159    133
D1156V5, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POMGNT1 MUTATED        5      1      1
  POMGNT1 WILD-TYPE    177    132     71
D1156V6, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        1      2      3      2
  POMGNT1 WILD-TYPE    111     94     89    184
D1156V7, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POMGNT1 MUTATED        1      0      4      0      1      0      2
  POMGNT1 WILD-TYPE     59     50     45     40     62    125     97
D1156V8, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        4      1      0      3
  POMGNT1 WILD-TYPE    126     77     68    193
D1156V9, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  POMGNT1 MUTATED        2      1      0      0      5      0      0      0
  POMGNT1 WILD-TYPE     38     61     28     80     64     48     43     28
                   vv
clus                CLUS_9
  POMGNT1 MUTATED        0
  POMGNT1 WILD-TYPE     74
D1156V10, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        0      0      0      0
  POMGNT1 WILD-TYPE     33     31     27     19
D1156V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        0      0      0      0
  POMGNT1 WILD-TYPE     54     10     24     22
D1156V12, multiclass

Clustering(1157) Variable = NAA10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA10 MUTATED        0      0      0      0
  NAA10 WILD-TYPE     46     58     64     43
D1157V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA10 MUTATED        0      0      0
  NAA10 WILD-TYPE     51     83     77
D1157V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA10 MUTATED        2      1      0      0
  NAA10 WILD-TYPE    176    182    101     20
D1157V3, multiclass
        clus
vv       NAA10 MUTATED NAA10 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA10 MUTATED        2      0      1
  NAA10 WILD-TYPE     85     80     99
D1157V4, multiclass
        clus
vv       NAA10 MUTATED NAA10 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA10 MUTATED        0      1      1
  NAA10 WILD-TYPE     89    159    137
D1157V5, multiclass
[1] "Remove cluster labels:" "NAA10 MUTATED"         
clus
  NAA10 MUTATED NAA10 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655      TCGA-AA-3664 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681      TCGA-AA-3688 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697      TCGA-AA-3710 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715      TCGA-AA-3811 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-4743 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G5-6641 
"NAA10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA10 MUTATED        0      2      0
  NAA10 WILD-TYPE    182    131     72
D1157V6, multiclass
[1] "Remove cluster labels:" "NAA10 MUTATED"         
clus
  NAA10 MUTATED NAA10 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655      TCGA-AA-3664 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681      TCGA-AA-3688 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697      TCGA-AA-3710 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715      TCGA-AA-3811 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-4743 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" "NAA10 WILD-TYPE" 
     TCGA-G5-6641 
"NAA10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA10 MUTATED        0      2      0      1
  NAA10 WILD-TYPE    112     94     92    185
D1157V7, multiclass
        clus
vv       NAA10 MUTATED NAA10 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAA10 MUTATED        0      1      0      1      0      0      1
  NAA10 WILD-TYPE     60     49     49     39     63    125     98
D1157V8, multiclass
        clus
vv       NAA10 MUTATED NAA10 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA10 MUTATED        1      0      1      1
  NAA10 WILD-TYPE    129     78     67    195
D1157V9, multiclass
        clus
vv       NAA10 MUTATED NAA10 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NAA10 MUTATED        1      0      0      0      0      0      1      0
  NAA10 WILD-TYPE     39     62     28     80     69     48     42     28
                 vv
clus              CLUS_9
  NAA10 MUTATED        1
  NAA10 WILD-TYPE     73
D1157V10, multiclass
        clus
vv       NAA10 MUTATED NAA10 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA10 MUTATED        0      0      0      0
  NAA10 WILD-TYPE     33     31     27     19
D1157V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA10 MUTATED        0      0      0      0
  NAA10 WILD-TYPE     54     10     24     22
D1157V12, multiclass

Clustering(1158) Variable = OR2A5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A5 MUTATED        3      0      0      1
  OR2A5 WILD-TYPE     43     58     64     42
D1158V1, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2A5 MUTATED        2      1      1
  OR2A5 WILD-TYPE     49     82     76
D1158V2, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A5 MUTATED        7      2      3      1
  OR2A5 WILD-TYPE    171    181     98     19
D1158V3, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2A5 MUTATED        4      2      2
  OR2A5 WILD-TYPE     83     78     98
D1158V4, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2A5 MUTATED        3      0      6
  OR2A5 WILD-TYPE     86    160    132
D1158V5, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             0             160
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2A5 MUTATED        4      1      4
  OR2A5 WILD-TYPE    178    132     68
D1158V6, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A5 MUTATED        3      2      3      4
  OR2A5 WILD-TYPE    109     94     89    182
D1158V7, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2A5 MUTATED        1      0      1      3      3      1      3
  OR2A5 WILD-TYPE     59     50     48     37     60    124     96
D1158V8, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A5 MUTATED        3      1      4      5
  OR2A5 WILD-TYPE    127     77     64    191
D1158V9, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             4              64
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2A5 MUTATED        2      1      1      1      2      2      4      0
  OR2A5 WILD-TYPE     38     61     27     79     67     46     39     28
                 vv
clus              CLUS_9
  OR2A5 MUTATED        0
  OR2A5 WILD-TYPE     74
D1158V10, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A5 MUTATED        2      0      1      1
  OR2A5 WILD-TYPE     31     31     26     18
D1158V11, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2A5 MUTATED        1      0      1      2
  OR2A5 WILD-TYPE     53     10     23     20
D1158V12, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1159) Variable = HAUS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        0      0      0      3
  HAUS3 WILD-TYPE     46     58     64     40
D1159V1, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS3 MUTATED        1      1      1
  HAUS3 WILD-TYPE     50     82     76
D1159V2, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        7      3      0      0
  HAUS3 WILD-TYPE    171    180    101     20
D1159V3, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS3 MUTATED        1      3      3
  HAUS3 WILD-TYPE     86     77     97
D1159V4, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS3 MUTATED        1      5      3
  HAUS3 WILD-TYPE     88    155    135
D1159V5, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS3 MUTATED        5      4      0
  HAUS3 WILD-TYPE    177    129     72
D1159V6, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        2      2      2      4
  HAUS3 WILD-TYPE    110     94     90    182
D1159V7, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HAUS3 MUTATED        4      0      3      0      0      0      3
  HAUS3 WILD-TYPE     56     50     46     40     63    125     96
D1159V8, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        4      1      1      3
  HAUS3 WILD-TYPE    126     77     67    193
D1159V9, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HAUS3 MUTATED        1      0      2      1      3      0      0      1
  HAUS3 WILD-TYPE     39     62     26     79     66     48     43     27
                 vv
clus              CLUS_9
  HAUS3 MUTATED        1
  HAUS3 WILD-TYPE     73
D1159V10, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        0      0      1      1
  HAUS3 WILD-TYPE     33     31     26     18
D1159V11, multiclass
[1] "Remove cluster labels:" "HAUS3 MUTATED"         
clus
  HAUS3 MUTATED HAUS3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        1      0      1      0
  HAUS3 WILD-TYPE     53     10     23     22
D1159V12, multiclass
[1] "Remove cluster labels:" "HAUS3 MUTATED"         
clus
  HAUS3 MUTATED HAUS3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" "HAUS3 WILD-TYPE" 

Clustering(1160) Variable = IFIH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIH1 MUTATED        1      0      0      3
  IFIH1 WILD-TYPE     45     58     64     40
D1160V1, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIH1 MUTATED        3      1      0
  IFIH1 WILD-TYPE     48     82     77
D1160V2, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIH1 MUTATED       11      2      3      0
  IFIH1 WILD-TYPE    167    181     98     20
D1160V3, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIH1 MUTATED        7      0      5
  IFIH1 WILD-TYPE     80     80     95
D1160V4, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIH1 MUTATED        1      5      6
  IFIH1 WILD-TYPE     88    155    132
D1160V5, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFIH1 MUTATED        5      6      1
  IFIH1 WILD-TYPE    177    127     71
D1160V6, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIH1 MUTATED        2      6      5      3
  IFIH1 WILD-TYPE    110     90     87    183
D1160V7, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFIH1 MUTATED        0      2      4      3      4      0      3
  IFIH1 WILD-TYPE     60     48     45     37     59    125     96
D1160V8, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             3              37
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIH1 MUTATED        4      6      1      4
  IFIH1 WILD-TYPE    126     72     67    192
D1160V9, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFIH1 MUTATED        1      6      1      2      4      0      0      0
  IFIH1 WILD-TYPE     39     56     27     78     65     48     43     28
                 vv
clus              CLUS_9
  IFIH1 MUTATED        1
  IFIH1 WILD-TYPE     73
D1160V10, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIH1 MUTATED        0      3      1      2
  IFIH1 WILD-TYPE     33     28     26     17
D1160V11, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFIH1 MUTATED        4      0      2      0
  IFIH1 WILD-TYPE     50     10     22     22
D1160V12, multiclass
        clus
vv       IFIH1 MUTATED IFIH1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1161) Variable = AKAP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        5      0      0      4
  AKAP11 WILD-TYPE     41     58     64     39
D1161V1, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        4      2      3
  AKAP11 WILD-TYPE     47     81     74
D1161V2, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED       13      3      7      1
  AKAP11 WILD-TYPE    165    180     94     19
D1161V3, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              3              180
  CLUS_3              7               94
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        7      2      8
  AKAP11 WILD-TYPE     80     78     92
D1161V4, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        1      6     11
  AKAP11 WILD-TYPE     88    154    127
D1161V5, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED       12      4      2
  AKAP11 WILD-TYPE    170    129     70
D1161V6, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        4      7      7      7
  AKAP11 WILD-TYPE    108     89     85    179
D1161V7, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              7               89
  CLUS_3              7               85
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKAP11 MUTATED        4      0      7      3      4      1      6
  AKAP11 WILD-TYPE     56     50     42     37     59    124     93
D1161V8, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED       10      5      2      6
  AKAP11 WILD-TYPE    120     73     66    190
D1161V9, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AKAP11 MUTATED        2      5      2      7      6      1      0      0
  AKAP11 WILD-TYPE     38     57     26     73     63     47     43     28
                  vv
clus               CLUS_9
  AKAP11 MUTATED        0
  AKAP11 WILD-TYPE     74
D1161V10, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              7               73
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        1      0      1      3
  AKAP11 WILD-TYPE     32     31     26     16
D1161V11, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        3      0      2      0
  AKAP11 WILD-TYPE     51     10     22     22
D1161V12, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1162) Variable = CRTC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRTC1 MUTATED        0      0      1      0
  CRTC1 WILD-TYPE     46     58     63     43
D1162V1, multiclass
[1] "Remove cluster labels:" "CRTC1 MUTATED"         
clus
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRTC1 MUTATED        0      1      0
  CRTC1 WILD-TYPE     51     82     77
D1162V2, multiclass
[1] "Remove cluster labels:" "CRTC1 MUTATED"         
clus
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRTC1 MUTATED       11      2      0      0
  CRTC1 WILD-TYPE    167    181    101     20
D1162V3, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRTC1 MUTATED        3      1      8
  CRTC1 WILD-TYPE     84     79     92
D1162V4, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRTC1 MUTATED        1      3      7
  CRTC1 WILD-TYPE     88    157    131
D1162V5, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRTC1 MUTATED        7      3      1
  CRTC1 WILD-TYPE    175    130     71
D1162V6, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRTC1 MUTATED        1      7      4      1
  CRTC1 WILD-TYPE    111     89     88    185
D1162V7, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CRTC1 MUTATED        0      2      9      1      0      1      0
  CRTC1 WILD-TYPE     60     48     40     39     63    124     99
D1162V8, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRTC1 MUTATED        6      2      0      5
  CRTC1 WILD-TYPE    124     76     68    191
D1162V9, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CRTC1 MUTATED        2      2      0      2      3      1      2      0
  CRTC1 WILD-TYPE     38     60     28     78     66     47     41     28
                 vv
clus              CLUS_9
  CRTC1 MUTATED        1
  CRTC1 WILD-TYPE     73
D1162V10, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRTC1 MUTATED        1      0      0      2
  CRTC1 WILD-TYPE     32     31     27     17
D1162V11, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRTC1 MUTATED        2      0      1      0
  CRTC1 WILD-TYPE     52     10     23     22
D1162V12, multiclass
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1163) Variable = PKHD1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKHD1L1 MUTATED        9      0      1      6
  PKHD1L1 WILD-TYPE     37     58     63     37
D1163V1, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               9                37
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               6                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PKHD1L1 MUTATED       10      2      4
  PKHD1L1 WILD-TYPE     41     81     73
D1163V2, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1              10                41
  CLUS_2               2                81
  CLUS_3               4                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKHD1L1 MUTATED       32      7      6      1
  PKHD1L1 WILD-TYPE    146    176     95     19
D1163V3, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1              32               146
  CLUS_2               7               176
  CLUS_3               6                95
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PKHD1L1 MUTATED       10      5     16
  PKHD1L1 WILD-TYPE     77     75     84
D1163V4, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1              10                77
  CLUS_2               5                75
  CLUS_3              16                84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PKHD1L1 MUTATED        3     17     17
  PKHD1L1 WILD-TYPE     86    143    121
D1163V5, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               3                86
  CLUS_2              17               143
  CLUS_3              17               121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PKHD1L1 MUTATED       14     17      6
  PKHD1L1 WILD-TYPE    168    116     66
D1163V6, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1              14               168
  CLUS_2              17               116
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKHD1L1 MUTATED        6     14     12     14
  PKHD1L1 WILD-TYPE    106     82     80    172
D1163V7, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               6               106
  CLUS_2              14                82
  CLUS_3              12                80
  CLUS_4              14               172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PKHD1L1 MUTATED        3      7     13      4      4      2     13
  PKHD1L1 WILD-TYPE     57     43     36     36     59    123     86
D1163V8, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               7                43
  CLUS_3              13                36
  CLUS_4               4                36
  CLUS_5               4                59
  CLUS_6               2               123
  CLUS_7              13                86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKHD1L1 MUTATED       17      7      3     18
  PKHD1L1 WILD-TYPE    113     71     65    178
D1163V9, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1              17               113
  CLUS_2               7                71
  CLUS_3               3                65
  CLUS_4              18               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PKHD1L1 MUTATED        6      8      2      6     15      2      2      2
  PKHD1L1 WILD-TYPE     34     54     26     74     54     46     41     26
                   vv
clus                CLUS_9
  PKHD1L1 MUTATED        2
  PKHD1L1 WILD-TYPE     72
D1163V10, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               6                34
  CLUS_2               8                54
  CLUS_3               2                26
  CLUS_4               6                74
  CLUS_5              15                54
  CLUS_6               2                46
  CLUS_7               2                41
  CLUS_8               2                26
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKHD1L1 MUTATED        2      1      3      7
  PKHD1L1 WILD-TYPE     31     30     24     12
D1163V11, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               3                24
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKHD1L1 MUTATED        8      2      2      1
  PKHD1L1 WILD-TYPE     46      8     22     21
D1163V12, multiclass
        clus
vv       PKHD1L1 MUTATED PKHD1L1 WILD-TYPE
  CLUS_1               8                46
  CLUS_2               2                 8
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1164) Variable = UFSP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UFSP2 MUTATED        0      0      0      2
  UFSP2 WILD-TYPE     46     58     64     41
D1164V1, multiclass
[1] "Remove cluster labels:" "UFSP2 MUTATED"         
clus
  UFSP2 MUTATED UFSP2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AY-4071 
"UFSP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UFSP2 MUTATED        1      0      1
  UFSP2 WILD-TYPE     50     83     76
D1164V2, multiclass
[1] "Remove cluster labels:" "UFSP2 MUTATED"         
clus
  UFSP2 MUTATED UFSP2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AY-4071 
"UFSP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UFSP2 MUTATED        5      0      0      0
  UFSP2 WILD-TYPE    173    183    101     20
D1164V3, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UFSP2 MUTATED        1      0      2
  UFSP2 WILD-TYPE     86     80     98
D1164V4, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UFSP2 MUTATED        0      3      1
  UFSP2 WILD-TYPE     89    157    137
D1164V5, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UFSP2 MUTATED        1      3      0
  UFSP2 WILD-TYPE    181    130     72
D1164V6, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UFSP2 MUTATED        0      2      0      3
  UFSP2 WILD-TYPE    112     94     92    183
D1164V7, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UFSP2 MUTATED        1      0      2      0      0      0      2
  UFSP2 WILD-TYPE     59     50     47     40     63    125     97
D1164V8, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UFSP2 MUTATED        2      0      0      2
  UFSP2 WILD-TYPE    128     78     68    194
D1164V9, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UFSP2 MUTATED        0      0      0      0      3      0      0      0
  UFSP2 WILD-TYPE     40     62     28     80     66     48     43     28
                 vv
clus              CLUS_9
  UFSP2 MUTATED        1
  UFSP2 WILD-TYPE     73
D1164V10, multiclass
        clus
vv       UFSP2 MUTATED UFSP2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UFSP2 MUTATED        0      0      0      1
  UFSP2 WILD-TYPE     33     31     27     18
D1164V11, multiclass
[1] "Remove cluster labels:" "UFSP2 MUTATED"         
clus
  UFSP2 MUTATED UFSP2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-G5-6641 
"UFSP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UFSP2 MUTATED        0      0      1      0
  UFSP2 WILD-TYPE     54     10     23     22
D1164V12, multiclass
[1] "Remove cluster labels:" "UFSP2 MUTATED"         
clus
  UFSP2 MUTATED UFSP2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" "UFSP2 WILD-TYPE" 
     TCGA-G5-6641 
"UFSP2 WILD-TYPE" 

Clustering(1165) Variable = MUC7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC7 MUTATED        2      0      0      0
  MUC7 WILD-TYPE     44     58     64     43
D1165V1, multiclass
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3601     TCGA-AG-3602 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AY-4071 
"MUC7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC7 MUTATED        2      0      0
  MUC7 WILD-TYPE     49     83     77
D1165V2, multiclass
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3601     TCGA-AG-3602 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-AY-4071 
"MUC7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC7 MUTATED        6      2      2      1
  MUC7 WILD-TYPE    172    181     99     19
D1165V3, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC7 MUTATED        5      1      3
  MUC7 WILD-TYPE     82     79     97
D1165V4, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC7 MUTATED        3      6      2
  MUC7 WILD-TYPE     86    154    136
D1165V5, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC7 MUTATED        2      3      6
  MUC7 WILD-TYPE    180    130     66
D1165V6, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            3            130
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC7 MUTATED        1      6      2      2
  MUC7 WILD-TYPE    111     90     90    184
D1165V7, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC7 MUTATED        1      4      3      0      1      0      2
  MUC7 WILD-TYPE     59     46     46     40     62    125     97
D1165V8, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            4             46
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC7 MUTATED        6      2      0      3
  MUC7 WILD-TYPE    124     76     68    193
D1165V9, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MUC7 MUTATED        2      2      1      0      3      0      1      0      2
  MUC7 WILD-TYPE     38     60     27     80     66     48     42     28     72
D1165V10, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC7 MUTATED        3      0      0      3
  MUC7 WILD-TYPE     30     31     27     16
D1165V11, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC7 MUTATED        4      0      2      0
  MUC7 WILD-TYPE     50     10     22     22
D1165V12, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1166) Variable = RIMBP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        0      0      0      1
  RIMBP3 WILD-TYPE     46     58     64     42
D1166V1, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        0      1      0
  RIMBP3 WILD-TYPE     51     82     77
D1166V2, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        4      2      0      0
  RIMBP3 WILD-TYPE    174    181    101     20
D1166V3, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        2      1      2
  RIMBP3 WILD-TYPE     85     79     98
D1166V4, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        1      2      2
  RIMBP3 WILD-TYPE     88    158    136
D1166V5, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMBP3 MUTATED        4      1      0
  RIMBP3 WILD-TYPE    178    132     72
D1166V6, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        2      1      2      1
  RIMBP3 WILD-TYPE    110     95     90    185
D1166V7, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIMBP3 MUTATED        1      1      2      0      1      0      1
  RIMBP3 WILD-TYPE     59     49     47     40     62    125     98
D1166V8, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        3      2      0      1
  RIMBP3 WILD-TYPE    127     76     68    195
D1166V9, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RIMBP3 MUTATED        1      3      2      0      0      0      0      0
  RIMBP3 WILD-TYPE     39     59     26     80     69     48     43     28
                  vv
clus               CLUS_9
  RIMBP3 MUTATED        0
  RIMBP3 WILD-TYPE     74
D1166V10, multiclass
        clus
vv       RIMBP3 MUTATED RIMBP3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        0      0      0      1
  RIMBP3 WILD-TYPE     33     31     27     18
D1166V11, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G5-6641 
"RIMBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMBP3 MUTATED        1      0      0      0
  RIMBP3 WILD-TYPE     53     10     24     22
D1166V12, multiclass
[1] "Remove cluster labels:" "RIMBP3 MUTATED"        
clus
  RIMBP3 MUTATED RIMBP3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" "RIMBP3 WILD-TYPE" 
      TCGA-G5-6641 
"RIMBP3 WILD-TYPE" 

Clustering(1167) Variable = S100A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  S100A2 MUTATED        1      0      0      1
  S100A2 WILD-TYPE     45     58     64     42
D1167V1, multiclass
[1] "Remove cluster labels:" "S100A2 MUTATED"        
clus
  S100A2 MUTATED S100A2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AY-4071 
"S100A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  S100A2 MUTATED        1      1      0
  S100A2 WILD-TYPE     50     82     77
D1167V2, multiclass
[1] "Remove cluster labels:" "S100A2 MUTATED"        
clus
  S100A2 MUTATED S100A2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" "S100A2 WILD-TYPE" 
      TCGA-AY-4071 
"S100A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  S100A2 MUTATED        1      2      4      1
  S100A2 WILD-TYPE    177    181     97     19
D1167V3, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              1              177
  CLUS_2              2              181
  CLUS_3              4               97
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  S100A2 MUTATED        1      2      3
  S100A2 WILD-TYPE     86     78     97
D1167V4, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  S100A2 MUTATED        0      4      1
  S100A2 WILD-TYPE     89    156    137
D1167V5, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  S100A2 MUTATED        2      3      0
  S100A2 WILD-TYPE    180    130     72
D1167V6, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  S100A2 MUTATED        2      2      2      2
  S100A2 WILD-TYPE    110     94     90    184
D1167V7, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  S100A2 MUTATED        2      1      1      0      2      0      2
  S100A2 WILD-TYPE     58     49     48     40     61    125     97
D1167V8, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  S100A2 MUTATED        2      2      2      2
  S100A2 WILD-TYPE    128     76     66    194
D1167V9, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  S100A2 MUTATED        0      2      2      0      1      1      2      0
  S100A2 WILD-TYPE     40     60     26     80     68     47     41     28
                  vv
clus               CLUS_9
  S100A2 MUTATED        0
  S100A2 WILD-TYPE     74
D1167V10, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  S100A2 MUTATED        0      2      1      0
  S100A2 WILD-TYPE     33     29     26     19
D1167V11, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  S100A2 MUTATED        1      1      1      0
  S100A2 WILD-TYPE     53      9     23     22
D1167V12, multiclass
        clus
vv       S100A2 MUTATED S100A2 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1168) Variable = PCSK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK1 MUTATED        1      0      0      4
  PCSK1 WILD-TYPE     45     58     64     39
D1168V1, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK1 MUTATED        2      1      2
  PCSK1 WILD-TYPE     49     82     75
D1168V2, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK1 MUTATED       12      3      4      0
  PCSK1 WILD-TYPE    166    180     97     20
D1168V3, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             3             180
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK1 MUTATED        7      0      7
  PCSK1 WILD-TYPE     80     80     93
D1168V4, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK1 MUTATED        1      7      5
  PCSK1 WILD-TYPE     88    153    133
D1168V5, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK1 MUTATED        5      7      1
  PCSK1 WILD-TYPE    177    126     71
D1168V6, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK1 MUTATED        3      6      5      5
  PCSK1 WILD-TYPE    109     90     87    181
D1168V7, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCSK1 MUTATED        2      2      5      2      3      1      4
  PCSK1 WILD-TYPE     58     48     44     38     60    124     95
D1168V8, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK1 MUTATED        7      4      1      7
  PCSK1 WILD-TYPE    123     74     67    189
D1168V9, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCSK1 MUTATED        1      5      1      1      6      0      3      0
  PCSK1 WILD-TYPE     39     57     27     79     63     48     40     28
                 vv
clus              CLUS_9
  PCSK1 MUTATED        2
  PCSK1 WILD-TYPE     72
D1168V10, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK1 MUTATED        2      1      1      3
  PCSK1 WILD-TYPE     31     30     26     16
D1168V11, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK1 MUTATED        5      0      1      1
  PCSK1 WILD-TYPE     49     10     23     21
D1168V12, multiclass
        clus
vv       PCSK1 MUTATED PCSK1 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1169) Variable = RTN4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN4 MUTATED        4      0      0      4
  RTN4 WILD-TYPE     42     58     64     39
D1169V1, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN4 MUTATED        6      1      1
  RTN4 WILD-TYPE     45     82     76
D1169V2, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN4 MUTATED       21      0      0      0
  RTN4 WILD-TYPE    157    183    101     20
D1169V3, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1           21            157
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN4 MUTATED        5      0      9
  RTN4 WILD-TYPE     82     80     91
D1169V4, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN4 MUTATED        4      6      9
  RTN4 WILD-TYPE     85    154    129
D1169V5, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            6            154
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN4 MUTATED        9      5      5
  RTN4 WILD-TYPE    173    128     67
D1169V6, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            5            128
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN4 MUTATED        1      5      6      9
  RTN4 WILD-TYPE    111     91     86    177
D1169V7, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            6             86
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RTN4 MUTATED        2      1      7      2      1      1      7
  RTN4 WILD-TYPE     58     49     42     38     62    124     92
D1169V8, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN4 MUTATED        6      4      0     10
  RTN4 WILD-TYPE    124     74     68    186
D1169V9, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RTN4 MUTATED        2      3      2      2      7      1      1      0      2
  RTN4 WILD-TYPE     38     59     26     78     62     47     42     28     72
D1169V10, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            7             62
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN4 MUTATED        0      0      0      4
  RTN4 WILD-TYPE     33     31     27     15
D1169V11, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN4 MUTATED        3      0      1      0
  RTN4 WILD-TYPE     51     10     23     22
D1169V12, multiclass
        clus
vv       RTN4 MUTATED RTN4 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1170) Variable = C14ORF104 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF104 MUTATED        1      0      0      2
  C14ORF104 WILD-TYPE     45     58     64     41
D1170V1, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 1                  45
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 2                  41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF104 MUTATED        0      2      1
  C14ORF104 WILD-TYPE     51     81     76
D1170V2, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 0                  51
  CLUS_2                 2                  81
  CLUS_3                 1                  76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF104 MUTATED        4      1      0      0
  C14ORF104 WILD-TYPE    174    182    101     20
D1170V3, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 4                 174
  CLUS_2                 1                 182
  CLUS_3                 0                 101
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF104 MUTATED        2      0      0
  C14ORF104 WILD-TYPE     85     80    100
D1170V4, multiclass
[1] "Remove cluster labels:" "C14ORF104 MUTATED"     
clus
  C14ORF104 MUTATED C14ORF104 WILD-TYPE 
                  2                 265 
         TCGA-A6-2671          TCGA-A6-2677          TCGA-A6-3809 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-3810          TCGA-A6-4105          TCGA-A6-5656 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-5657          TCGA-A6-5659          TCGA-A6-5660 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-5661          TCGA-A6-5662          TCGA-A6-5664 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-5665          TCGA-A6-5666          TCGA-A6-6137 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6138          TCGA-A6-6141          TCGA-A6-6142 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6648          TCGA-A6-6649          TCGA-A6-6651 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6652          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6780          TCGA-A6-6781          TCGA-A6-6782 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3489          TCGA-AA-3492          TCGA-AA-3496 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3502          TCGA-AA-3510          TCGA-AA-3511 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3655          TCGA-AA-3660          TCGA-AA-3662 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3663          TCGA-AA-3697          TCGA-AA-3712 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3713          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6888          TCGA-AD-6889          TCGA-AD-6890 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6895          TCGA-AD-6899          TCGA-AD-6901 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AF-2693          TCGA-AF-4110          TCGA-AF-6136 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AG-3742          TCGA-AG-A01W 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A026 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A036          TCGA-AH-6544 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AH-6644          TCGA-AU-3779          TCGA-AU-6004 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AY-5543          TCGA-AY-6196          TCGA-AY-6197 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AY-6386          TCGA-AZ-4315          TCGA-AZ-4323 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-4616          TCGA-AZ-4681          TCGA-AZ-4682 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-5407          TCGA-AZ-6598 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6599          TCGA-AZ-6600          TCGA-AZ-6601 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6606 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6607          TCGA-AZ-6608          TCGA-CA-5254 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CA-5255          TCGA-CA-5796          TCGA-CA-5797 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CA-6715          TCGA-CA-6716          TCGA-CA-6717 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6622 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-4947          TCGA-CK-4948 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CK-4950          TCGA-CK-4952          TCGA-CK-5912 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CK-5913          TCGA-CK-5914          TCGA-CK-5915 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6746          TCGA-CK-6747 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CK-6748          TCGA-CK-6751          TCGA-CL-5917 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-4743          TCGA-CM-4744 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-4746          TCGA-CM-4747          TCGA-CM-4752 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-5341          TCGA-CM-5344          TCGA-CM-5348 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-5349          TCGA-CM-5860          TCGA-CM-5861 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-5862          TCGA-CM-5863          TCGA-CM-5864 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-5868          TCGA-CM-6161          TCGA-CM-6162 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6163          TCGA-CM-6164          TCGA-CM-6165 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6166          TCGA-CM-6167          TCGA-CM-6168 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6169          TCGA-CM-6170          TCGA-CM-6171 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6172          TCGA-CM-6674          TCGA-CM-6675 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-5538          TCGA-D5-5539          TCGA-D5-5540 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-5541          TCGA-D5-6529          TCGA-D5-6532 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6535 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6537          TCGA-D5-6538 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6539          TCGA-D5-6540          TCGA-D5-6541 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6898          TCGA-D5-6920          TCGA-D5-6922 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6923          TCGA-D5-6924          TCGA-D5-6926 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6927          TCGA-D5-6928          TCGA-D5-6929 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6931          TCGA-D5-6932          TCGA-D5-7000 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6155 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-6157          TCGA-DC-6158          TCGA-DC-6160 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A0X9          TCGA-DM-A0XD          TCGA-DM-A0XF 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D4          TCGA-DM-A1D6 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1DB          TCGA-DM-A1HA 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1HB          TCGA-DM-A282          TCGA-DM-A285 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A28C          TCGA-DM-A28E          TCGA-DM-A28F 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A28G          TCGA-DM-A28H          TCGA-DM-A28K 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DT-5265          TCGA-DY-A0XA          TCGA-DY-A1DC 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DF          TCGA-DY-A1DG 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EF-5830          TCGA-EI-6506 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-EI-6507          TCGA-EI-6508          TCGA-EI-6510 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6703          TCGA-F4-6704 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6806          TCGA-F4-6807 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F4-6854 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6855          TCGA-F4-6856          TCGA-F5-6464 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-F5-6813 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6293          TCGA-G4-6299          TCGA-G4-6303 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6304          TCGA-G4-6306          TCGA-G4-6307 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6309          TCGA-G4-6310          TCGA-G4-6315 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6317          TCGA-G4-6321          TCGA-G4-6323 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6586          TCGA-G4-6588          TCGA-G4-6625 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6626          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF104 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF104 MUTATED        0      2      1
  C14ORF104 WILD-TYPE     89    158    137
D1170V5, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 2                 158
  CLUS_3                 1                 137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF104 MUTATED        1      2      0
  C14ORF104 WILD-TYPE    181    131     72
D1170V6, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 1                 181
  CLUS_2                 2                 131
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF104 MUTATED        1      0      1      3
  C14ORF104 WILD-TYPE    111     96     91    183
D1170V7, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 0                  96
  CLUS_3                 1                  91
  CLUS_4                 3                 183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF104 MUTATED        1      1      1      0      0      1      1
  C14ORF104 WILD-TYPE     59     49     48     40     63    124     98
D1170V8, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 1                  49
  CLUS_3                 1                  48
  CLUS_4                 0                  40
  CLUS_5                 0                  63
  CLUS_6                 1                 124
  CLUS_7                 1                  98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF104 MUTATED        1      1      0      3
  C14ORF104 WILD-TYPE    129     77     68    193
D1170V9, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 1                 129
  CLUS_2                 1                  77
  CLUS_3                 0                  68
  CLUS_4                 3                 193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF104 MUTATED        0      1      1      1      1      0      1      0
  C14ORF104 WILD-TYPE     40     61     27     79     68     48     42     28
                     vv
clus                  CLUS_9
  C14ORF104 MUTATED        0
  C14ORF104 WILD-TYPE     74
D1170V10, multiclass
        clus
vv       C14ORF104 MUTATED C14ORF104 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 1                  61
  CLUS_3                 1                  27
  CLUS_4                 1                  79
  CLUS_5                 1                  68
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF104 MUTATED        1      0      0      0
  C14ORF104 WILD-TYPE     32     31     27     19
D1170V11, multiclass
[1] "Remove cluster labels:" "C14ORF104 MUTATED"     
clus
  C14ORF104 MUTATED C14ORF104 WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6964 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1HA          TCGA-DM-A282 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28F          TCGA-DY-A1DC 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF104 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF104 MUTATED        1      0      0      0
  C14ORF104 WILD-TYPE     53     10     24     22
D1170V12, multiclass
[1] "Remove cluster labels:" "C14ORF104 MUTATED"     
clus
  C14ORF104 MUTATED C14ORF104 WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6964 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1HA          TCGA-DM-A282 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28F          TCGA-DY-A1DC 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" "C14ORF104 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF104 WILD-TYPE" 

Clustering(1171) Variable = USF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USF1 MUTATED        1      0      0      1
  USF1 WILD-TYPE     45     58     64     42
D1171V1, multiclass
[1] "Remove cluster labels:" "USF1 MUTATED"          
clus
  USF1 MUTATED USF1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AY-4071 
"USF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USF1 MUTATED        1      1      0
  USF1 WILD-TYPE     50     82     77
D1171V2, multiclass
[1] "Remove cluster labels:" "USF1 MUTATED"          
clus
  USF1 MUTATED USF1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AY-4071 
"USF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USF1 MUTATED        4      0      1      0
  USF1 WILD-TYPE    174    183    100     20
D1171V3, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USF1 MUTATED        0      0      3
  USF1 WILD-TYPE     87     80     97
D1171V4, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USF1 MUTATED        0      3      2
  USF1 WILD-TYPE     89    157    136
D1171V5, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USF1 MUTATED        1      2      2
  USF1 WILD-TYPE    181    131     70
D1171V6, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USF1 MUTATED        0      2      1      2
  USF1 WILD-TYPE    112     94     91    184
D1171V7, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USF1 MUTATED        0      1      2      0      0      0      2
  USF1 WILD-TYPE     60     49     47     40     63    125     97
D1171V8, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USF1 MUTATED        3      0      0      2
  USF1 WILD-TYPE    127     78     68    194
D1171V9, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  USF1 MUTATED        0      1      2      0      2      0      0      0      0
  USF1 WILD-TYPE     40     61     26     80     67     48     43     28     74
D1171V10, multiclass
        clus
vv       USF1 MUTATED USF1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USF1 MUTATED        0      0      0      2
  USF1 WILD-TYPE     33     31     27     17
D1171V11, multiclass
[1] "Remove cluster labels:" "USF1 MUTATED"          
clus
  USF1 MUTATED USF1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USF1 MUTATED        1      0      1      0
  USF1 WILD-TYPE     53     10     23     22
D1171V12, multiclass
[1] "Remove cluster labels:" "USF1 MUTATED"          
clus
  USF1 MUTATED USF1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" "USF1 WILD-TYPE" 

Clustering(1172) Variable = KLF12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF12 MUTATED        1      0      1      0
  KLF12 WILD-TYPE     45     58     63     43
D1172V1, multiclass
[1] "Remove cluster labels:" "KLF12 MUTATED"         
clus
  KLF12 MUTATED KLF12 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3883      TCGA-AG-3885 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AY-4071 
"KLF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF12 MUTATED        1      1      0
  KLF12 WILD-TYPE     50     82     77
D1172V2, multiclass
[1] "Remove cluster labels:" "KLF12 MUTATED"         
clus
  KLF12 MUTATED KLF12 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3883      TCGA-AG-3885 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AY-4071 
"KLF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF12 MUTATED        3      1      1      0
  KLF12 WILD-TYPE    175    182    100     20
D1172V3, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF12 MUTATED        1      1      1
  KLF12 WILD-TYPE     86     79     99
D1172V4, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF12 MUTATED        0      0      4
  KLF12 WILD-TYPE     89    160    134
D1172V5, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             0             160
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLF12 MUTATED        3      1      0
  KLF12 WILD-TYPE    179    132     72
D1172V6, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF12 MUTATED        1      2      0      2
  KLF12 WILD-TYPE    111     94     92    184
D1172V7, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLF12 MUTATED        0      0      0      2      1      1      1
  KLF12 WILD-TYPE     60     50     49     38     62    124     98
D1172V8, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             0              49
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF12 MUTATED        3      0      0      2
  KLF12 WILD-TYPE    127     78     68    194
D1172V9, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLF12 MUTATED        1      0      0      1      0      1      0      1
  KLF12 WILD-TYPE     39     62     28     79     69     47     43     27
                 vv
clus              CLUS_9
  KLF12 MUTATED        1
  KLF12 WILD-TYPE     73
D1172V10, multiclass
        clus
vv       KLF12 MUTATED KLF12 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF12 MUTATED        0      0      1      0
  KLF12 WILD-TYPE     33     31     26     19
D1172V11, multiclass
[1] "Remove cluster labels:" "KLF12 MUTATED"         
clus
  KLF12 MUTATED KLF12 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-G5-6641 
"KLF12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF12 MUTATED        0      0      1      0
  KLF12 WILD-TYPE     54     10     23     22
D1172V12, multiclass
[1] "Remove cluster labels:" "KLF12 MUTATED"         
clus
  KLF12 MUTATED KLF12 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" "KLF12 WILD-TYPE" 
     TCGA-G5-6641 
"KLF12 WILD-TYPE" 

Clustering(1173) Variable = VIM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VIM MUTATED        1      0      0      2
  VIM WILD-TYPE     45     58     64     41
D1173V1, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VIM MUTATED        1      0      2
  VIM WILD-TYPE     50     83     75
D1173V2, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           1            50
  CLUS_2           0            83
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VIM MUTATED        8      0      0      0
  VIM WILD-TYPE    170    183    101     20
D1173V3, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           8           170
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VIM MUTATED        1      0      4
  VIM WILD-TYPE     86     80     96
D1173V4, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           1            86
  CLUS_2           0            80
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VIM MUTATED        3      1      2
  VIM WILD-TYPE     86    159    136
D1173V5, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           3            86
  CLUS_2           1           159
  CLUS_3           2           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  VIM MUTATED        4      1      1
  VIM WILD-TYPE    178    132     71
D1173V6, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           4           178
  CLUS_2           1           132
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VIM MUTATED        2      2      1      4
  VIM WILD-TYPE    110     94     91    182
D1173V7, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           2           110
  CLUS_2           2            94
  CLUS_3           1            91
  CLUS_4           4           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VIM MUTATED        3      0      0      2      0      1      3
  VIM WILD-TYPE     57     50     49     38     63    124     96
D1173V8, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           3            57
  CLUS_2           0            50
  CLUS_3           0            49
  CLUS_4           2            38
  CLUS_5           0            63
  CLUS_6           1           124
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VIM MUTATED        2      0      2      3
  VIM WILD-TYPE    128     78     66    193
D1173V9, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           2           128
  CLUS_2           0            78
  CLUS_3           2            66
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VIM MUTATED        2      0      1      2      0      0      1      0      1
  VIM WILD-TYPE     38     62     27     78     69     48     42     28     73
D1173V10, multiclass
        clus
vv       VIM MUTATED VIM WILD-TYPE
  CLUS_1           2            38
  CLUS_2           0            62
  CLUS_3           1            27
  CLUS_4           2            78
  CLUS_5           0            69
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VIM MUTATED        0      0      2      0
  VIM WILD-TYPE     33     31     25     19
D1173V11, multiclass
[1] "Remove cluster labels:" "VIM MUTATED"           
clus
  VIM MUTATED VIM WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AY-6196 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VIM MUTATED        0      0      1      1
  VIM WILD-TYPE     54     10     23     21
D1173V12, multiclass
[1] "Remove cluster labels:" "VIM MUTATED"           
clus
  VIM MUTATED VIM WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AY-6196 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"VIM WILD-TYPE" "VIM WILD-TYPE" "VIM WILD-TYPE" 

Clustering(1174) Variable = GLG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLG1 MUTATED        2      1      0      2
  GLG1 WILD-TYPE     44     57     64     41
D1174V1, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLG1 MUTATED        3      2      0
  GLG1 WILD-TYPE     48     81     77
D1174V2, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLG1 MUTATED        9      4      1      0
  GLG1 WILD-TYPE    169    179    100     20
D1174V3, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLG1 MUTATED        5      2      3
  GLG1 WILD-TYPE     82     78     97
D1174V4, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLG1 MUTATED        1      4      8
  GLG1 WILD-TYPE     88    156    130
D1174V5, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLG1 MUTATED        7      2      4
  GLG1 WILD-TYPE    175    131     68
D1174V6, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLG1 MUTATED        2      1      6      5
  GLG1 WILD-TYPE    110     95     86    181
D1174V7, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLG1 MUTATED        1      0      5      0      3      1      4
  GLG1 WILD-TYPE     59     50     44     40     60    124     95
D1174V8, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLG1 MUTATED        3      4      2      4
  GLG1 WILD-TYPE    127     74     66    192
D1174V9, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            4             74
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GLG1 MUTATED        0      5      2      1      3      1      1      0      0
  GLG1 WILD-TYPE     40     57     26     79     66     47     42     28     74
D1174V10, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLG1 MUTATED        1      1      2      0
  GLG1 WILD-TYPE     32     30     25     19
D1174V11, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLG1 MUTATED        1      1      1      1
  GLG1 WILD-TYPE     53      9     23     21
D1174V12, multiclass
        clus
vv       GLG1 MUTATED GLG1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1175) Variable = CETN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        0      0      0      0
  CETN3 WILD-TYPE     46     58     64     43
D1175V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        0      0      0
  CETN3 WILD-TYPE     51     83     77
D1175V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        6      0      0      0
  CETN3 WILD-TYPE    172    183    101     20
D1175V3, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        3      0      3
  CETN3 WILD-TYPE     84     80     97
D1175V4, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        0      0      6
  CETN3 WILD-TYPE     89    160    132
D1175V5, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             0             160
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        5      1      0
  CETN3 WILD-TYPE    177    132     72
D1175V6, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        0      2      4      0
  CETN3 WILD-TYPE    112     94     88    186
D1175V7, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CETN3 MUTATED        0      1      4      0      1      0      0
  CETN3 WILD-TYPE     60     49     45     40     62    125     99
D1175V8, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        4      2      0      0
  CETN3 WILD-TYPE    126     76     68    196
D1175V9, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CETN3 MUTATED        0      3      0      0      1      0      2      0
  CETN3 WILD-TYPE     40     59     28     80     68     48     41     28
                 vv
clus              CLUS_9
  CETN3 MUTATED        0
  CETN3 WILD-TYPE     74
D1175V10, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        1      0      0      1
  CETN3 WILD-TYPE     32     31     27     18
D1175V11, multiclass
[1] "Remove cluster labels:" "CETN3 MUTATED"         
clus
  CETN3 MUTATED CETN3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        2      0      0      0
  CETN3 WILD-TYPE     52     10     24     22
D1175V12, multiclass
[1] "Remove cluster labels:" "CETN3 MUTATED"         
clus
  CETN3 MUTATED CETN3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" "CETN3 WILD-TYPE" 

Clustering(1176) Variable = SFRS15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS15 MUTATED        5      0      1      3
  SFRS15 WILD-TYPE     41     58     63     40
D1176V1, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS15 MUTATED        5      2      2
  SFRS15 WILD-TYPE     46     81     75
D1176V2, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS15 MUTATED       18      2      0      0
  SFRS15 WILD-TYPE    160    181    101     20
D1176V3, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS15 MUTATED        7      0      5
  SFRS15 WILD-TYPE     80     80     95
D1176V4, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS15 MUTATED        0      9      5
  SFRS15 WILD-TYPE     89    151    133
D1176V5, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              9              151
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS15 MUTATED        4      7      3
  SFRS15 WILD-TYPE    178    126     69
D1176V6, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              7              126
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS15 MUTATED        1      5      4     10
  SFRS15 WILD-TYPE    111     91     88    176
D1176V7, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRS15 MUTATED        1      2      6      0      1      2      8
  SFRS15 WILD-TYPE     59     48     43     40     62    123     91
D1176V8, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS15 MUTATED        4      3      1     12
  SFRS15 WILD-TYPE    126     75     67    184
D1176V9, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SFRS15 MUTATED        0      3      3      3      7      1      0      1
  SFRS15 WILD-TYPE     40     59     25     77     62     47     43     27
                  vv
clus               CLUS_9
  SFRS15 MUTATED        2
  SFRS15 WILD-TYPE     72
D1176V10, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              3               77
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS15 MUTATED        1      0      0      3
  SFRS15 WILD-TYPE     32     31     27     16
D1176V11, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS15 MUTATED        1      0      3      0
  SFRS15 WILD-TYPE     53     10     21     22
D1176V12, multiclass
        clus
vv       SFRS15 MUTATED SFRS15 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1177) Variable = ADAMTSL3 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL3 MUTATED        8      1      1      4
  ADAMTSL3 WILD-TYPE     38     57     63     39
D1177V1, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                8                 38
  CLUS_2                1                 57
  CLUS_3                1                 63
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL3 MUTATED        8      4      2
  ADAMTSL3 WILD-TYPE     43     79     75
D1177V2, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                8                 43
  CLUS_2                4                 79
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL3 MUTATED       25      8     12      1
  ADAMTSL3 WILD-TYPE    153    175     89     19
D1177V3, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1               25                153
  CLUS_2                8                175
  CLUS_3               12                 89
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL3 MUTATED       12      3     16
  ADAMTSL3 WILD-TYPE     75     77     84
D1177V4, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1               12                 75
  CLUS_2                3                 77
  CLUS_3               16                 84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL3 MUTATED        7     12     16
  ADAMTSL3 WILD-TYPE     82    148    122
D1177V5, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                7                 82
  CLUS_2               12                148
  CLUS_3               16                122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL3 MUTATED       22      8      5
  ADAMTSL3 WILD-TYPE    160    125     67
D1177V6, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1               22                160
  CLUS_2                8                125
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL3 MUTATED        6     13     13     14
  ADAMTSL3 WILD-TYPE    106     83     79    172
D1177V7, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                6                106
  CLUS_2               13                 83
  CLUS_3               13                 79
  CLUS_4               14                172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAMTSL3 MUTATED        2      8     14      3      6      3     10
  ADAMTSL3 WILD-TYPE     58     42     35     37     57    122     89
D1177V8, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                8                 42
  CLUS_3               14                 35
  CLUS_4                3                 37
  CLUS_5                6                 57
  CLUS_6                3                122
  CLUS_7               10                 89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL3 MUTATED       18     10      2     16
  ADAMTSL3 WILD-TYPE    112     68     66    180
D1177V9, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1               18                112
  CLUS_2               10                 68
  CLUS_3                2                 66
  CLUS_4               16                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAMTSL3 MUTATED        4     12      4      6     13      1      2      1
  ADAMTSL3 WILD-TYPE     36     50     24     74     56     47     41     27
                    vv
clus                 CLUS_9
  ADAMTSL3 MUTATED        3
  ADAMTSL3 WILD-TYPE     71
D1177V10, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                4                 36
  CLUS_2               12                 50
  CLUS_3                4                 24
  CLUS_4                6                 74
  CLUS_5               13                 56
  CLUS_6                1                 47
  CLUS_7                2                 41
  CLUS_8                1                 27
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL3 MUTATED        4      3      1      5
  ADAMTSL3 WILD-TYPE     29     28     26     14
D1177V11, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                3                 28
  CLUS_3                1                 26
  CLUS_4                5                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL3 MUTATED       10      0      2      1
  ADAMTSL3 WILD-TYPE     44     10     22     21
D1177V12, multiclass
        clus
vv       ADAMTSL3 MUTATED ADAMTSL3 WILD-TYPE
  CLUS_1               10                 44
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1178) Variable = CASP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        2      0      0      0
  CASP1 WILD-TYPE     44     58     64     43
D1178V1, multiclass
[1] "Remove cluster labels:" "CASP1 MUTATED"         
clus
  CASP1 MUTATED CASP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AY-4071 
"CASP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        2      0      0
  CASP1 WILD-TYPE     49     83     77
D1178V2, multiclass
[1] "Remove cluster labels:" "CASP1 MUTATED"         
clus
  CASP1 MUTATED CASP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979      TCGA-AA-3980 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AY-4071 
"CASP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        4      0      1      1
  CASP1 WILD-TYPE    174    183    100     19
D1178V3, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        0      0      4
  CASP1 WILD-TYPE     87     80     96
D1178V4, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        0      2      1
  CASP1 WILD-TYPE     89    158    137
D1178V5, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        1      1      1
  CASP1 WILD-TYPE    181    132     71
D1178V6, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        0      2      2      2
  CASP1 WILD-TYPE    112     94     90    184
D1178V7, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP1 MUTATED        0      0      4      0      0      0      2
  CASP1 WILD-TYPE     60     50     45     40     63    125     97
D1178V8, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        3      0      0      3
  CASP1 WILD-TYPE    127     78     68    193
D1178V9, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASP1 MUTATED        0      0      0      0      5      0      1      0
  CASP1 WILD-TYPE     40     62     28     80     64     48     42     28
                 vv
clus              CLUS_9
  CASP1 MUTATED        0
  CASP1 WILD-TYPE     74
D1178V10, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        0      0      0      1
  CASP1 WILD-TYPE     33     31     27     18
D1178V11, multiclass
[1] "Remove cluster labels:" "CASP1 MUTATED"         
clus
  CASP1 MUTATED CASP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-G5-6641 
"CASP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        1      0      0      0
  CASP1 WILD-TYPE     53     10     24     22
D1178V12, multiclass
[1] "Remove cluster labels:" "CASP1 MUTATED"         
clus
  CASP1 MUTATED CASP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235 
"CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" "CASP1 WILD-TYPE" 
     TCGA-G5-6641 
"CASP1 WILD-TYPE" 

Clustering(1179) Variable = B4GALT6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        2      0      0      2
  B4GALT6 WILD-TYPE     44     58     64     41
D1179V1, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT6 MUTATED        3      1      0
  B4GALT6 WILD-TYPE     48     82     77
D1179V2, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        8      0      1      1
  B4GALT6 WILD-TYPE    170    183    100     19
D1179V3, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT6 MUTATED        4      0      1
  B4GALT6 WILD-TYPE     83     80     99
D1179V4, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT6 MUTATED        2      4      2
  B4GALT6 WILD-TYPE     87    156    136
D1179V5, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT6 MUTATED        4      4      0
  B4GALT6 WILD-TYPE    178    129     72
D1179V6, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        0      2      3      5
  B4GALT6 WILD-TYPE    112     94     89    181
D1179V7, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B4GALT6 MUTATED        0      2      1      1      1      0      5
  B4GALT6 WILD-TYPE     60     48     48     39     62    125     94
D1179V8, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        1      3      0      6
  B4GALT6 WILD-TYPE    129     75     68    190
D1179V9, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  B4GALT6 MUTATED        0      4      1      0      4      0      0      0
  B4GALT6 WILD-TYPE     40     58     27     80     65     48     43     28
                   vv
clus                CLUS_9
  B4GALT6 MUTATED        1
  B4GALT6 WILD-TYPE     73
D1179V10, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        0      2      0      0
  B4GALT6 WILD-TYPE     33     29     27     19
D1179V11, multiclass
[1] "Remove cluster labels:" "B4GALT6 MUTATED"       
clus
  B4GALT6 MUTATED B4GALT6 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-CA-6718        TCGA-CA-6719 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        2      0      0      0
  B4GALT6 WILD-TYPE     52     10     24     22
D1179V12, multiclass
[1] "Remove cluster labels:" "B4GALT6 MUTATED"       
clus
  B4GALT6 MUTATED B4GALT6 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6651        TCGA-A6-6653        TCGA-A6-6654 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-CA-6718        TCGA-CA-6719 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" "B4GALT6 WILD-TYPE" 

Clustering(1180) Variable = RAD21 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD21 MUTATED        1      0      2      3
  RAD21 WILD-TYPE     45     58     62     40
D1180V1, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD21 MUTATED        4      2      0
  RAD21 WILD-TYPE     47     81     77
D1180V2, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD21 MUTATED       12      1      4      0
  RAD21 WILD-TYPE    166    182     97     20
D1180V3, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD21 MUTATED        4      1      6
  RAD21 WILD-TYPE     83     79     94
D1180V4, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD21 MUTATED        4      5      6
  RAD21 WILD-TYPE     85    155    132
D1180V5, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD21 MUTATED        6      6      3
  RAD21 WILD-TYPE    176    127     69
D1180V6, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD21 MUTATED        3      5      3      6
  RAD21 WILD-TYPE    109     91     89    180
D1180V7, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAD21 MUTATED        1      4      4      1      1      2      4
  RAD21 WILD-TYPE     59     46     45     39     62    123     95
D1180V8, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD21 MUTATED        5      4      1      5
  RAD21 WILD-TYPE    125     74     67    191
D1180V9, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAD21 MUTATED        2      3      0      2      5      1      0      0
  RAD21 WILD-TYPE     38     59     28     78     64     47     43     28
                 vv
clus              CLUS_9
  RAD21 MUTATED        2
  RAD21 WILD-TYPE     72
D1180V10, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD21 MUTATED        2      1      0      2
  RAD21 WILD-TYPE     31     30     27     17
D1180V11, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD21 MUTATED        4      0      1      0
  RAD21 WILD-TYPE     50     10     23     22
D1180V12, multiclass
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1181) Variable = HUS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUS1 MUTATED        0      0      0      1
  HUS1 WILD-TYPE     46     58     64     42
D1181V1, multiclass
[1] "Remove cluster labels:" "HUS1 MUTATED"          
clus
  HUS1 MUTATED HUS1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HUS1 MUTATED        0      1      0
  HUS1 WILD-TYPE     51     82     77
D1181V2, multiclass
[1] "Remove cluster labels:" "HUS1 MUTATED"          
clus
  HUS1 MUTATED HUS1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"HUS1 WILD-TYPE" "HUS1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUS1 MUTATED        5      2      1      0
  HUS1 WILD-TYPE    173    181    100     20
D1181V3, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HUS1 MUTATED        3      1      3
  HUS1 WILD-TYPE     84     79     97
D1181V4, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HUS1 MUTATED        1      5      2
  HUS1 WILD-TYPE     88    155    136
D1181V5, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HUS1 MUTATED        3      4      1
  HUS1 WILD-TYPE    179    129     71
D1181V6, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUS1 MUTATED        1      2      3      2
  HUS1 WILD-TYPE    111     94     89    184
D1181V7, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HUS1 MUTATED        1      0      2      1      2      0      2
  HUS1 WILD-TYPE     59     50     47     39     61    125     97
D1181V8, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUS1 MUTATED        3      2      1      2
  HUS1 WILD-TYPE    127     76     67    194
D1181V9, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HUS1 MUTATED        1      2      1      2      1      0      0      0      1
  HUS1 WILD-TYPE     39     60     27     78     68     48     43     28     73
D1181V10, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUS1 MUTATED        0      1      1      3
  HUS1 WILD-TYPE     33     30     26     16
D1181V11, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HUS1 MUTATED        2      1      2      0
  HUS1 WILD-TYPE     52      9     22     22
D1181V12, multiclass
        clus
vv       HUS1 MUTATED HUS1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1182) Variable = PTPN14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        4      0      0      2
  PTPN14 WILD-TYPE     42     58     64     41
D1182V1, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        4      1      1
  PTPN14 WILD-TYPE     47     82     76
D1182V2, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED       16      2      2      0
  PTPN14 WILD-TYPE    162    181     99     20
D1182V3, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1             16              162
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        5      2      7
  PTPN14 WILD-TYPE     82     78     93
D1182V4, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED        2      6     11
  PTPN14 WILD-TYPE     87    154    127
D1182V5, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN14 MUTATED       10      7      2
  PTPN14 WILD-TYPE    172    126     70
D1182V6, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        2      6      6      7
  PTPN14 WILD-TYPE    110     90     86    179
D1182V7, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              6               86
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN14 MUTATED        3      2      7      1      2      1      5
  PTPN14 WILD-TYPE     57     48     42     39     61    124     94
D1182V8, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        6      5      0     10
  PTPN14 WILD-TYPE    124     73     68    186
D1182V9, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPN14 MUTATED        3      5      0      3      8      1      0      0
  PTPN14 WILD-TYPE     37     57     28     77     61     47     43     28
                  vv
clus               CLUS_9
  PTPN14 MUTATED        1
  PTPN14 WILD-TYPE     73
D1182V10, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              8               61
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        1      0      1      6
  PTPN14 WILD-TYPE     32     31     26     13
D1182V11, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              6               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN14 MUTATED        4      0      2      2
  PTPN14 WILD-TYPE     50     10     22     20
D1182V12, multiclass
        clus
vv       PTPN14 MUTATED PTPN14 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1183) Variable = FZD6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD6 MUTATED        1      0      0      4
  FZD6 WILD-TYPE     45     58     64     39
D1183V1, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD6 MUTATED        2      1      2
  FZD6 WILD-TYPE     49     82     75
D1183V2, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD6 MUTATED       12      2      1      0
  FZD6 WILD-TYPE    166    181    100     20
D1183V3, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD6 MUTATED        4      2      4
  FZD6 WILD-TYPE     83     78     96
D1183V4, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD6 MUTATED        1      6      7
  FZD6 WILD-TYPE     88    154    131
D1183V5, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD6 MUTATED        8      5      1
  FZD6 WILD-TYPE    174    128     71
D1183V6, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD6 MUTATED        1      7      3      4
  FZD6 WILD-TYPE    111     89     89    182
D1183V7, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FZD6 MUTATED        2      1      5      2      1      0      4
  FZD6 WILD-TYPE     58     49     44     38     62    125     95
D1183V8, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD6 MUTATED        6      1      1      5
  FZD6 WILD-TYPE    124     77     67    191
D1183V9, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FZD6 MUTATED        5      1      1      0      5      0      0      0      1
  FZD6 WILD-TYPE     35     61     27     80     64     48     43     28     73
D1183V10, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD6 MUTATED        0      1      0      3
  FZD6 WILD-TYPE     33     30     27     16
D1183V11, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD6 MUTATED        2      0      2      0
  FZD6 WILD-TYPE     52     10     22     22
D1183V12, multiclass
        clus
vv       FZD6 MUTATED FZD6 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1184) Variable = C6ORF222 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF222 MUTATED        1      0      0      2
  C6ORF222 WILD-TYPE     45     58     64     41
D1184V1, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF222 MUTATED        2      1      0
  C6ORF222 WILD-TYPE     49     82     77
D1184V2, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF222 MUTATED        6      0      0      0
  C6ORF222 WILD-TYPE    172    183    101     20
D1184V3, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF222 MUTATED        0      0      3
  C6ORF222 WILD-TYPE     87     80     97
D1184V4, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF222 MUTATED        0      2      3
  C6ORF222 WILD-TYPE     89    158    135
D1184V5, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF222 MUTATED        2      2      1
  C6ORF222 WILD-TYPE    180    131     71
D1184V6, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                2                131
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF222 MUTATED        0      3      0      3
  C6ORF222 WILD-TYPE    112     93     92    183
D1184V7, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                0                 92
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF222 MUTATED        0      0      3      0      0      0      3
  C6ORF222 WILD-TYPE     60     50     46     40     63    125     96
D1184V8, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF222 MUTATED        2      0      0      3
  C6ORF222 WILD-TYPE    128     78     68    193
D1184V9, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF222 MUTATED        1      0      1      0      3      0      0      0
  C6ORF222 WILD-TYPE     39     62     27     80     66     48     43     28
                    vv
clus                 CLUS_9
  C6ORF222 MUTATED        0
  C6ORF222 WILD-TYPE     74
D1184V10, multiclass
        clus
vv       C6ORF222 MUTATED C6ORF222 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                0                 62
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF222 MUTATED        0      0      0      1
  C6ORF222 WILD-TYPE     33     31     27     18
D1184V11, multiclass
[1] "Remove cluster labels:" "C6ORF222 MUTATED"      
clus
  C6ORF222 MUTATED C6ORF222 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6654         TCGA-A6-6781 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-G5-6641 
"C6ORF222 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF222 MUTATED        0      0      1      0
  C6ORF222 WILD-TYPE     54     10     23     22
D1184V12, multiclass
[1] "Remove cluster labels:" "C6ORF222 MUTATED"      
clus
  C6ORF222 MUTATED C6ORF222 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6654         TCGA-A6-6781 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" "C6ORF222 WILD-TYPE" 
        TCGA-G5-6641 
"C6ORF222 WILD-TYPE" 

Clustering(1185) Variable = ANKRD26 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD26 MUTATED        3      0      0      3
  ANKRD26 WILD-TYPE     43     58     64     40
D1185V1, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD26 MUTATED        4      1      1
  ANKRD26 WILD-TYPE     47     82     76
D1185V2, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD26 MUTATED       14      5      2      2
  ANKRD26 WILD-TYPE    164    178     99     18
D1185V3, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1              14               164
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD26 MUTATED        5      2     11
  ANKRD26 WILD-TYPE     82     78     89
D1185V4, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3              11                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD26 MUTATED        3      6      9
  ANKRD26 WILD-TYPE     86    154    129
D1185V5, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               6               154
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD26 MUTATED        9      6      3
  ANKRD26 WILD-TYPE    173    127     69
D1185V6, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               6               127
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD26 MUTATED        2     11      4      6
  ANKRD26 WILD-TYPE    110     85     88    180
D1185V7, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               2               110
  CLUS_2              11                85
  CLUS_3               4                88
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD26 MUTATED        2      6      5      2      3      0      5
  ANKRD26 WILD-TYPE     58     44     44     38     60    125     94
D1185V8, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               6                44
  CLUS_3               5                44
  CLUS_4               2                38
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD26 MUTATED        8      3      3      8
  ANKRD26 WILD-TYPE    122     75     65    188
D1185V9, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               3                75
  CLUS_3               3                65
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD26 MUTATED        1      4      3      2      7      1      3      0
  ANKRD26 WILD-TYPE     39     58     25     78     62     47     40     28
                   vv
clus                CLUS_9
  ANKRD26 MUTATED        1
  ANKRD26 WILD-TYPE     73
D1185V10, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               7                62
  CLUS_6               1                47
  CLUS_7               3                40
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD26 MUTATED        1      1      2      1
  ANKRD26 WILD-TYPE     32     30     25     18
D1185V11, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               2                25
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD26 MUTATED        2      0      3      0
  ANKRD26 WILD-TYPE     52     10     21     22
D1185V12, multiclass
        clus
vv       ANKRD26 MUTATED ANKRD26 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1186) Variable = TDRD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD7 MUTATED        1      0      0      4
  TDRD7 WILD-TYPE     45     58     64     39
D1186V1, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD7 MUTATED        2      1      2
  TDRD7 WILD-TYPE     49     82     75
D1186V2, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD7 MUTATED       12      4      0      0
  TDRD7 WILD-TYPE    166    179    101     20
D1186V3, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD7 MUTATED        4      2      5
  TDRD7 WILD-TYPE     83     78     95
D1186V4, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD7 MUTATED        3      5      8
  TDRD7 WILD-TYPE     86    155    130
D1186V5, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TDRD7 MUTATED        5      8      3
  TDRD7 WILD-TYPE    177    125     69
D1186V6, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD7 MUTATED        4      6      2      4
  TDRD7 WILD-TYPE    108     90     90    182
D1186V7, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TDRD7 MUTATED        3      2      4      0      3      0      4
  TDRD7 WILD-TYPE     57     48     45     40     60    125     95
D1186V8, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD7 MUTATED        6      3      0      6
  TDRD7 WILD-TYPE    124     75     68    190
D1186V9, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TDRD7 MUTATED        4      2      3      0      5      0      0      0
  TDRD7 WILD-TYPE     36     60     25     80     64     48     43     28
                 vv
clus              CLUS_9
  TDRD7 MUTATED        1
  TDRD7 WILD-TYPE     73
D1186V10, multiclass
        clus
vv       TDRD7 MUTATED TDRD7 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD7 MUTATED        1      0      0      1
  TDRD7 WILD-TYPE     32     31     27     18
D1186V11, multiclass
[1] "Remove cluster labels:" "TDRD7 MUTATED"         
clus
  TDRD7 MUTATED TDRD7 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6142 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDRD7 MUTATED        2      0      0      0
  TDRD7 WILD-TYPE     52     10     24     22
D1186V12, multiclass
[1] "Remove cluster labels:" "TDRD7 MUTATED"         
clus
  TDRD7 MUTATED TDRD7 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6142 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" "TDRD7 WILD-TYPE" 

Clustering(1187) Variable = MFSD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD6 MUTATED        1      0      0      0
  MFSD6 WILD-TYPE     45     58     64     43
D1187V1, multiclass
[1] "Remove cluster labels:" "MFSD6 MUTATED"         
clus
  MFSD6 MUTATED MFSD6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD6 MUTATED        1      0      0
  MFSD6 WILD-TYPE     50     83     77
D1187V2, multiclass
[1] "Remove cluster labels:" "MFSD6 MUTATED"         
clus
  MFSD6 MUTATED MFSD6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MFSD6 WILD-TYPE" "MFSD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD6 MUTATED        3      3      1      1
  MFSD6 WILD-TYPE    175    180    100     19
D1187V3, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD6 MUTATED        3      3      1
  MFSD6 WILD-TYPE     84     77     99
D1187V4, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD6 MUTATED        1      0      5
  MFSD6 WILD-TYPE     88    160    133
D1187V5, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD6 MUTATED        5      0      1
  MFSD6 WILD-TYPE    177    133     71
D1187V6, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD6 MUTATED        3      2      2      1
  MFSD6 WILD-TYPE    109     94     90    185
D1187V7, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFSD6 MUTATED        2      0      2      2      1      0      1
  MFSD6 WILD-TYPE     58     50     47     38     62    125     98
D1187V8, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD6 MUTATED        5      1      1      1
  MFSD6 WILD-TYPE    125     77     67    195
D1187V9, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MFSD6 MUTATED        1      2      1      1      0      1      1      1
  MFSD6 WILD-TYPE     39     60     27     79     69     47     42     27
                 vv
clus              CLUS_9
  MFSD6 MUTATED        0
  MFSD6 WILD-TYPE     74
D1187V10, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD6 MUTATED        2      0      1      2
  MFSD6 WILD-TYPE     31     31     26     17
D1187V11, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD6 MUTATED        2      0      2      1
  MFSD6 WILD-TYPE     52     10     22     21
D1187V12, multiclass
        clus
vv       MFSD6 MUTATED MFSD6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1188) Variable = KIAA1632 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        4      1      0      7
  KIAA1632 WILD-TYPE     42     57     64     36
D1188V1, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                7                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1632 MUTATED        5      2      5
  KIAA1632 WILD-TYPE     46     81     72
D1188V2, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                2                 81
  CLUS_3                5                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED       18      7      4      0
  KIAA1632 WILD-TYPE    160    176     97     20
D1188V3, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1               18                160
  CLUS_2                7                176
  CLUS_3                4                 97
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1632 MUTATED        7      4      7
  KIAA1632 WILD-TYPE     80     76     93
D1188V4, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                4                 76
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1632 MUTATED        6      8     10
  KIAA1632 WILD-TYPE     83    152    128
D1188V5, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                6                 83
  CLUS_2                8                152
  CLUS_3               10                128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1632 MUTATED       11      8      5
  KIAA1632 WILD-TYPE    171    125     67
D1188V6, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1               11                171
  CLUS_2                8                125
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        5     10      3     13
  KIAA1632 WILD-TYPE    107     86     89    173
D1188V7, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                5                107
  CLUS_2               10                 86
  CLUS_3                3                 89
  CLUS_4               13                173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1632 MUTATED        3      6      3      4      2      3     10
  KIAA1632 WILD-TYPE     57     44     46     36     61    122     89
D1188V8, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                6                 44
  CLUS_3                3                 46
  CLUS_4                4                 36
  CLUS_5                2                 61
  CLUS_6                3                122
  CLUS_7               10                 89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        9      4      4     13
  KIAA1632 WILD-TYPE    121     74     64    183
D1188V9, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                9                121
  CLUS_2                4                 74
  CLUS_3                4                 64
  CLUS_4               13                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1632 MUTATED        4      3      3      4      7      2      4      1
  KIAA1632 WILD-TYPE     36     59     25     76     62     46     39     27
                    vv
clus                 CLUS_9
  KIAA1632 MUTATED        2
  KIAA1632 WILD-TYPE     72
D1188V10, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                3                 59
  CLUS_3                3                 25
  CLUS_4                4                 76
  CLUS_5                7                 62
  CLUS_6                2                 46
  CLUS_7                4                 39
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        2      0      3      3
  KIAA1632 WILD-TYPE     31     31     24     16
D1188V11, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                3                 24
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        4      1      1      2
  KIAA1632 WILD-TYPE     50      9     23     20
D1188V12, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                1                  9
  CLUS_3                1                 23
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1189) Variable = ADK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADK MUTATED        0      0      0      1
  ADK WILD-TYPE     46     58     64     42
D1189V1, multiclass
[1] "Remove cluster labels:" "ADK MUTATED"           
clus
  ADK MUTATED ADK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADK MUTATED        0      1      0
  ADK WILD-TYPE     51     82     77
D1189V2, multiclass
[1] "Remove cluster labels:" "ADK MUTATED"           
clus
  ADK MUTATED ADK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" "ADK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADK MUTATED        5      0      2      0
  ADK WILD-TYPE    173    183     99     20
D1189V3, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           5           173
  CLUS_2           0           183
  CLUS_3           2            99
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADK MUTATED        2      0      4
  ADK WILD-TYPE     85     80     96
D1189V4, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           2            85
  CLUS_2           0            80
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADK MUTATED        1      3      3
  ADK WILD-TYPE     88    157    135
D1189V5, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           1            88
  CLUS_2           3           157
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ADK MUTATED        4      3      0
  ADK WILD-TYPE    178    130     72
D1189V6, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           4           178
  CLUS_2           3           130
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADK MUTATED        0      5      1      1
  ADK WILD-TYPE    112     91     91    185
D1189V7, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           0           112
  CLUS_2           5            91
  CLUS_3           1            91
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADK MUTATED        0      2      3      0      1      0      1
  ADK WILD-TYPE     60     48     46     40     62    125     98
D1189V8, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           0            60
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADK MUTATED        4      0      0      3
  ADK WILD-TYPE    126     78     68    193
D1189V9, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           4           126
  CLUS_2           0            78
  CLUS_3           0            68
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ADK MUTATED        3      1      1      0      1      0      0      0      1
  ADK WILD-TYPE     37     61     27     80     68     48     43     28     73
D1189V10, multiclass
        clus
vv       ADK MUTATED ADK WILD-TYPE
  CLUS_1           3            37
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADK MUTATED        0      0      0      0
  ADK WILD-TYPE     33     31     27     19
D1189V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADK MUTATED        0      0      0      0
  ADK WILD-TYPE     54     10     24     22
D1189V12, multiclass

Clustering(1190) Variable = PTPRB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRB MUTATED        3      0      0      1
  PTPRB WILD-TYPE     43     58     64     42
D1190V1, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRB MUTATED        3      1      0
  PTPRB WILD-TYPE     48     82     77
D1190V2, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRB MUTATED       13      2      0      2
  PTPRB WILD-TYPE    165    181    101     18
D1190V3, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRB MUTATED        7      2      5
  PTPRB WILD-TYPE     80     78     95
D1190V4, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRB MUTATED        5      2      8
  PTPRB WILD-TYPE     84    158    130
D1190V5, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             5              84
  CLUS_2             2             158
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRB MUTATED       11      2      2
  PTPRB WILD-TYPE    171    131     70
D1190V6, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1            11             171
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRB MUTATED        4      4      5      5
  PTPRB WILD-TYPE    108     92     87    181
D1190V7, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRB MUTATED        3      1      6      1      2      1      4
  PTPRB WILD-TYPE     57     49     43     39     61    124     95
D1190V8, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRB MUTATED        8      3      1      6
  PTPRB WILD-TYPE    122     75     67    190
D1190V9, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRB MUTATED        2      4      2      3      4      1      0      1
  PTPRB WILD-TYPE     38     58     26     77     65     47     43     27
                 vv
clus              CLUS_9
  PTPRB MUTATED        1
  PTPRB WILD-TYPE     73
D1190V10, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRB MUTATED        1      0      2      1
  PTPRB WILD-TYPE     32     31     25     18
D1190V11, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRB MUTATED        1      0      2      1
  PTPRB WILD-TYPE     53     10     22     21
D1190V12, multiclass
        clus
vv       PTPRB MUTATED PTPRB WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1191) Variable = ZNF280C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280C MUTATED        1      1      0      3
  ZNF280C WILD-TYPE     45     57     64     40
D1191V1, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280C MUTATED        1      2      2
  ZNF280C WILD-TYPE     50     81     75
D1191V2, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280C MUTATED        8      5      1      0
  ZNF280C WILD-TYPE    170    178    100     20
D1191V3, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               8               170
  CLUS_2               5               178
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280C MUTATED        5      3      2
  ZNF280C WILD-TYPE     82     77     98
D1191V4, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               5                82
  CLUS_2               3                77
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280C MUTATED        0      5      6
  ZNF280C WILD-TYPE     89    155    132
D1191V5, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF280C MUTATED        5      5      1
  ZNF280C WILD-TYPE    177    128     71
D1191V6, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               5               177
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280C MUTATED        4      3      3      4
  ZNF280C WILD-TYPE    108     93     89    182
D1191V7, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               4               108
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF280C MUTATED        3      1      2      2      2      2      2
  ZNF280C WILD-TYPE     57     49     47     38     61    123     97
D1191V8, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               2                61
  CLUS_6               2               123
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280C MUTATED        4      3      2      5
  ZNF280C WILD-TYPE    126     75     66    191
D1191V9, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               2                66
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF280C MUTATED        2      2      2      1      1      1      2      1
  ZNF280C WILD-TYPE     38     60     26     79     68     47     41     27
                   vv
clus                CLUS_9
  ZNF280C MUTATED        2
  ZNF280C WILD-TYPE     72
D1191V10, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280C MUTATED        1      1      1      2
  ZNF280C WILD-TYPE     32     30     26     17
D1191V11, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF280C MUTATED        3      1      0      1
  ZNF280C WILD-TYPE     51      9     24     21
D1191V12, multiclass
        clus
vv       ZNF280C MUTATED ZNF280C WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1192) Variable = ATIC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATIC MUTATED        2      0      0      1
  ATIC WILD-TYPE     44     58     64     42
D1192V1, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATIC MUTATED        3      0      0
  ATIC WILD-TYPE     48     83     77
D1192V2, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATIC MUTATED       11      3      0      0
  ATIC WILD-TYPE    167    180    101     20
D1192V3, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1           11            167
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATIC MUTATED        2      2      6
  ATIC WILD-TYPE     85     78     94
D1192V4, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATIC MUTATED        3      4      4
  ATIC WILD-TYPE     86    156    134
D1192V5, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            3             86
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATIC MUTATED        5      6      0
  ATIC WILD-TYPE    177    127     72
D1192V6, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            5            177
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATIC MUTATED        2      6      2      4
  ATIC WILD-TYPE    110     90     90    182
D1192V7, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATIC MUTATED        1      2      3      3      1      0      4
  ATIC WILD-TYPE     59     48     46     37     62    125     95
D1192V8, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATIC MUTATED        6      2      2      3
  ATIC WILD-TYPE    124     76     66    193
D1192V9, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATIC MUTATED        2      3      0      2      3      0      2      1      0
  ATIC WILD-TYPE     38     59     28     78     66     48     41     27     74
D1192V10, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATIC MUTATED        1      0      1      1
  ATIC WILD-TYPE     32     31     26     18
D1192V11, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATIC MUTATED        2      0      1      0
  ATIC WILD-TYPE     52     10     23     22
D1192V12, multiclass
        clus
vv       ATIC MUTATED ATIC WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1193) Variable = USP16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP16 MUTATED        3      0      0      1
  USP16 WILD-TYPE     43     58     64     42
D1193V1, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP16 MUTATED        2      1      1
  USP16 WILD-TYPE     49     82     76
D1193V2, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP16 MUTATED        6      2      0      0
  USP16 WILD-TYPE    172    181    101     20
D1193V3, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP16 MUTATED        2      0      2
  USP16 WILD-TYPE     85     80     98
D1193V4, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP16 MUTATED        1      1      3
  USP16 WILD-TYPE     88    159    135
D1193V5, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP16 MUTATED        4      1      0
  USP16 WILD-TYPE    178    132     72
D1193V6, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP16 MUTATED        0      2      2      4
  USP16 WILD-TYPE    112     94     90    182
D1193V7, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP16 MUTATED        1      1      2      0      0      1      3
  USP16 WILD-TYPE     59     49     47     40     63    124     96
D1193V8, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP16 MUTATED        4      0      0      3
  USP16 WILD-TYPE    126     78     68    193
D1193V9, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP16 MUTATED        0      1      0      2      1      1      1      1
  USP16 WILD-TYPE     40     61     28     78     68     47     42     27
                 vv
clus              CLUS_9
  USP16 MUTATED        0
  USP16 WILD-TYPE     74
D1193V10, multiclass
        clus
vv       USP16 MUTATED USP16 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP16 MUTATED        0      0      0      0
  USP16 WILD-TYPE     33     31     27     19
D1193V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP16 MUTATED        0      0      0      0
  USP16 WILD-TYPE     54     10     24     22
D1193V12, multiclass

Clustering(1194) Variable = CIR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        2      0      0      2
  CIR1 WILD-TYPE     44     58     64     41
D1194V1, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        2      2      0
  CIR1 WILD-TYPE     49     81     77
D1194V2, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        6      2      1      1
  CIR1 WILD-TYPE    172    181    100     19
D1194V3, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        3      1      2
  CIR1 WILD-TYPE     84     79     98
D1194V4, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        0      2      4
  CIR1 WILD-TYPE     89    158    134
D1194V5, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        2      4      0
  CIR1 WILD-TYPE    180    129     72
D1194V6, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        2      4      1      3
  CIR1 WILD-TYPE    110     92     91    183
D1194V7, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CIR1 MUTATED        0      2      0      3      1      1      3
  CIR1 WILD-TYPE     60     48     49     37     62    124     96
D1194V8, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            0             49
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        3      0      2      4
  CIR1 WILD-TYPE    127     78     66    192
D1194V9, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CIR1 MUTATED        1      0      1      2      0      1      2      1      1
  CIR1 WILD-TYPE     39     62     27     78     69     47     41     27     73
D1194V10, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            0             69
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        1      1      1      0
  CIR1 WILD-TYPE     32     30     26     19
D1194V11, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        1      1      0      1
  CIR1 WILD-TYPE     53      9     24     21
D1194V12, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1195) Variable = OR4C15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4C15 MUTATED        1      0      0      2
  OR4C15 WILD-TYPE     45     58     64     41
D1195V1, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4C15 MUTATED        1      1      1
  OR4C15 WILD-TYPE     50     82     76
D1195V2, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4C15 MUTATED       11      3      2      0
  OR4C15 WILD-TYPE    167    180     99     20
D1195V3, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4C15 MUTATED        7      1      4
  OR4C15 WILD-TYPE     80     79     96
D1195V4, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4C15 MUTATED        2      7      6
  OR4C15 WILD-TYPE     87    153    132
D1195V5, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4C15 MUTATED        5      9      1
  OR4C15 WILD-TYPE    177    124     71
D1195V6, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              9              124
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4C15 MUTATED        3      5      3      5
  OR4C15 WILD-TYPE    109     91     89    181
D1195V7, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4C15 MUTATED        4      2      2      4      0      1      3
  OR4C15 WILD-TYPE     56     48     47     36     63    124     96
D1195V8, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              4               36
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4C15 MUTATED        4      2      3      6
  OR4C15 WILD-TYPE    126     76     65    190
D1195V9, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              3               65
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4C15 MUTATED        3      3      0      0      2      1      3      0
  OR4C15 WILD-TYPE     37     59     28     80     67     47     40     28
                  vv
clus               CLUS_9
  OR4C15 MUTATED        3
  OR4C15 WILD-TYPE     71
D1195V10, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4C15 MUTATED        1      0      2      1
  OR4C15 WILD-TYPE     32     31     25     18
D1195V11, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4C15 MUTATED        2      0      1      1
  OR4C15 WILD-TYPE     52     10     23     21
D1195V12, multiclass
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1196) Variable = ANK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        8      2      0      7
  ANK3 WILD-TYPE     38     56     64     36
D1196V1, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            8             38
  CLUS_2            2             56
  CLUS_3            0             64
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       10      4      3
  ANK3 WILD-TYPE     41     79     74
D1196V2, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           10             41
  CLUS_2            4             79
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED       44      6      3      1
  ANK3 WILD-TYPE    134    177     98     19
D1196V3, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           44            134
  CLUS_2            6            177
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       14      5     16
  ANK3 WILD-TYPE     73     75     84
D1196V4, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           14             73
  CLUS_2            5             75
  CLUS_3           16             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED        8     17     22
  ANK3 WILD-TYPE     81    143    116
D1196V5, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            8             81
  CLUS_2           17            143
  CLUS_3           22            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       23     18      6
  ANK3 WILD-TYPE    159    115     66
D1196V6, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           23            159
  CLUS_2           18            115
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        7     17     12     18
  ANK3 WILD-TYPE    105     79     80    168
D1196V7, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            7            105
  CLUS_2           17             79
  CLUS_3           12             80
  CLUS_4           18            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANK3 MUTATED        6      7     19      2      2      3     15
  ANK3 WILD-TYPE     54     43     30     38     61    122     84
D1196V8, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            7             43
  CLUS_3           19             30
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            3            122
  CLUS_7           15             84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED       21      6      2     23
  ANK3 WILD-TYPE    109     72     66    173
D1196V9, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           21            109
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4           23            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ANK3 MUTATED        6      7      6      4     19      1      4      3      2
  ANK3 WILD-TYPE     34     55     22     76     50     47     39     25     72
D1196V10, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            7             55
  CLUS_3            6             22
  CLUS_4            4             76
  CLUS_5           19             50
  CLUS_6            1             47
  CLUS_7            4             39
  CLUS_8            3             25
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        2      0      1      7
  ANK3 WILD-TYPE     31     31     26     12
D1196V11, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            7             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED        4      0      6      0
  ANK3 WILD-TYPE     50     10     18     22
D1196V12, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            6             18
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1197) Variable = PPFIBP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPFIBP1 MUTATED        3      0      0      1
  PPFIBP1 WILD-TYPE     43     58     64     42
D1197V1, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPFIBP1 MUTATED        3      0      1
  PPFIBP1 WILD-TYPE     48     83     76
D1197V2, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPFIBP1 MUTATED       12      1      0      1
  PPFIBP1 WILD-TYPE    166    182    101     19
D1197V3, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPFIBP1 MUTATED        5      2      3
  PPFIBP1 WILD-TYPE     82     78     97
D1197V4, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPFIBP1 MUTATED        0      5      8
  PPFIBP1 WILD-TYPE     89    155    130
D1197V5, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPFIBP1 MUTATED        6      5      2
  PPFIBP1 WILD-TYPE    176    128     70
D1197V6, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPFIBP1 MUTATED        4      3      3      4
  PPFIBP1 WILD-TYPE    108     93     89    182
D1197V7, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPFIBP1 MUTATED        2      2      5      1      1      0      3
  PPFIBP1 WILD-TYPE     58     48     44     39     62    125     96
D1197V8, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPFIBP1 MUTATED        5      5      0      4
  PPFIBP1 WILD-TYPE    125     73     68    192
D1197V9, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPFIBP1 MUTATED        1      3      1      0      3      3      1      2
  PPFIBP1 WILD-TYPE     39     59     27     80     66     45     42     26
                   vv
clus                CLUS_9
  PPFIBP1 MUTATED        0
  PPFIBP1 WILD-TYPE     74
D1197V10, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               3                45
  CLUS_7               1                42
  CLUS_8               2                26
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPFIBP1 MUTATED        2      2      0      1
  PPFIBP1 WILD-TYPE     31     29     27     18
D1197V11, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPFIBP1 MUTATED        3      0      0      2
  PPFIBP1 WILD-TYPE     51     10     24     20
D1197V12, multiclass
        clus
vv       PPFIBP1 MUTATED PPFIBP1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1198) Variable = NTNG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTNG1 MUTATED        0      2      0      2
  NTNG1 WILD-TYPE     46     56     64     41
D1198V1, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTNG1 MUTATED        1      1      2
  NTNG1 WILD-TYPE     50     82     75
D1198V2, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTNG1 MUTATED       10      5      2      0
  NTNG1 WILD-TYPE    168    178     99     20
D1198V3, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTNG1 MUTATED        5      0      8
  NTNG1 WILD-TYPE     82     80     92
D1198V4, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTNG1 MUTATED        1     10      5
  NTNG1 WILD-TYPE     88    150    133
D1198V5, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2            10             150
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTNG1 MUTATED        7      6      3
  NTNG1 WILD-TYPE    175    127     69
D1198V6, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTNG1 MUTATED        1      9      2      5
  NTNG1 WILD-TYPE    111     87     90    181
D1198V7, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             9              87
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NTNG1 MUTATED        1      2      7      1      2      1      3
  NTNG1 WILD-TYPE     59     48     42     39     61    124     96
D1198V8, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTNG1 MUTATED       10      2      0      4
  NTNG1 WILD-TYPE    120     76     68    192
D1198V9, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NTNG1 MUTATED        4      3      0      0      6      1      0      0
  NTNG1 WILD-TYPE     36     59     28     80     63     47     43     28
                 vv
clus              CLUS_9
  NTNG1 MUTATED        2
  NTNG1 WILD-TYPE     72
D1198V10, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTNG1 MUTATED        0      1      1      2
  NTNG1 WILD-TYPE     33     30     26     17
D1198V11, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTNG1 MUTATED        1      0      3      0
  NTNG1 WILD-TYPE     53     10     21     22
D1198V12, multiclass
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1199) Variable = TRPA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPA1 MUTATED        3      1      2      4
  TRPA1 WILD-TYPE     43     57     62     39
D1199V1, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPA1 MUTATED        4      3      3
  TRPA1 WILD-TYPE     47     80     74
D1199V2, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPA1 MUTATED       16     11      5      0
  TRPA1 WILD-TYPE    162    172     96     20
D1199V3, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1            16             162
  CLUS_2            11             172
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPA1 MUTATED        3      8      9
  TRPA1 WILD-TYPE     84     72     91
D1199V4, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             8              72
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPA1 MUTATED        4     13     13
  TRPA1 WILD-TYPE     85    147    125
D1199V5, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            13             147
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPA1 MUTATED       14     11      5
  TRPA1 WILD-TYPE    168    122     67
D1199V6, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1            14             168
  CLUS_2            11             122
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPA1 MUTATED       10      7      5      9
  TRPA1 WILD-TYPE    102     89     87    177
D1199V7, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1            10             102
  CLUS_2             7              89
  CLUS_3             5              87
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPA1 MUTATED        8      1      7      1      4      2      8
  TRPA1 WILD-TYPE     52     49     42     39     59    123     91
D1199V8, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             8              52
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPA1 MUTATED       11      4      4     12
  TRPA1 WILD-TYPE    119     74     64    184
D1199V9, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             4              74
  CLUS_3             4              64
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRPA1 MUTATED        1      4      2      4      7      2      4      1
  TRPA1 WILD-TYPE     39     58     26     76     62     46     39     27
                 vv
clus              CLUS_9
  TRPA1 MUTATED        6
  TRPA1 WILD-TYPE     68
D1199V10, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             2              46
  CLUS_7             4              39
  CLUS_8             1              27
  CLUS_9             6              68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPA1 MUTATED        2      1      1      4
  TRPA1 WILD-TYPE     31     30     26     15
D1199V11, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPA1 MUTATED        2      1      2      3
  TRPA1 WILD-TYPE     52      9     22     19
D1199V12, multiclass
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1200) Variable = CWF19L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        4      0      0      4
  CWF19L2 WILD-TYPE     42     58     64     39
D1200V1, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CWF19L2 MUTATED        3      3      2
  CWF19L2 WILD-TYPE     48     80     75
D1200V2, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               3                80
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED       15      3      1      0
  CWF19L2 WILD-TYPE    163    180    100     20
D1200V3, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CWF19L2 MUTATED        6      1      4
  CWF19L2 WILD-TYPE     81     79     96
D1200V4, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CWF19L2 MUTATED        2      2      7
  CWF19L2 WILD-TYPE     87    158    131
D1200V5, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CWF19L2 MUTATED        9      2      0
  CWF19L2 WILD-TYPE    173    131     72
D1200V6, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        2      5      4      8
  CWF19L2 WILD-TYPE    110     91     88    178
D1200V7, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CWF19L2 MUTATED        1      0      7      1      3      2      5
  CWF19L2 WILD-TYPE     59     50     42     39     60    123     94
D1200V8, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               7                42
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               2               123
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        5      4      1      9
  CWF19L2 WILD-TYPE    125     74     67    187
D1200V9, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CWF19L2 MUTATED        0      5      3      2      8      0      0      0
  CWF19L2 WILD-TYPE     40     57     25     78     61     48     43     28
                   vv
clus                CLUS_9
  CWF19L2 MUTATED        1
  CWF19L2 WILD-TYPE     73
D1200V10, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               5                57
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        1      0      1      2
  CWF19L2 WILD-TYPE     32     31     26     17
D1200V11, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        2      0      2      0
  CWF19L2 WILD-TYPE     52     10     22     22
D1200V12, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1201) Variable = SERPINA9 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA9 MUTATED        0      1      0      0
  SERPINA9 WILD-TYPE     46     57     64     43
D1201V1, multiclass
[1] "Remove cluster labels:" "SERPINA9 MUTATED"      
clus
  SERPINA9 MUTATED SERPINA9 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01Q 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02W 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3608 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3611         TCGA-AG-3612 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA9 MUTATED        0      0      1
  SERPINA9 WILD-TYPE     51     83     76
D1201V2, multiclass
[1] "Remove cluster labels:" "SERPINA9 MUTATED"      
clus
  SERPINA9 MUTATED SERPINA9 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01Q 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02W 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3608 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3611         TCGA-AG-3612 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" "SERPINA9 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA9 MUTATED        4      1      5      1
  SERPINA9 WILD-TYPE    174    182     96     19
D1201V3, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                1                182
  CLUS_3                5                 96
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA9 MUTATED        5      2      3
  SERPINA9 WILD-TYPE     82     78     97
D1201V4, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                2                 78
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA9 MUTATED        1      5      3
  SERPINA9 WILD-TYPE     88    155    135
D1201V5, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                5                155
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA9 MUTATED        3      4      2
  SERPINA9 WILD-TYPE    179    129     70
D1201V6, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA9 MUTATED        2      3      5      1
  SERPINA9 WILD-TYPE    110     93     87    185
D1201V7, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                5                 87
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERPINA9 MUTATED        0      1      4      0      5      1      0
  SERPINA9 WILD-TYPE     60     49     45     40     58    124     99
D1201V8, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                5                 58
  CLUS_6                1                124
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA9 MUTATED        7      3      0      1
  SERPINA9 WILD-TYPE    123     75     68    195
D1201V9, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                3                 75
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SERPINA9 MUTATED        3      2      2      1      2      0      1      0
  SERPINA9 WILD-TYPE     37     60     26     79     67     48     42     28
                    vv
clus                 CLUS_9
  SERPINA9 MUTATED        0
  SERPINA9 WILD-TYPE     74
D1201V10, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                1                 79
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA9 MUTATED        1      1      0      2
  SERPINA9 WILD-TYPE     32     30     27     17
D1201V11, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA9 MUTATED        3      0      1      0
  SERPINA9 WILD-TYPE     51     10     23     22
D1201V12, multiclass
        clus
vv       SERPINA9 MUTATED SERPINA9 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1202) Variable = HSP90AA1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        1      0      0      2
  HSP90AA1 WILD-TYPE     45     58     64     41
D1202V1, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        1      1      1
  HSP90AA1 WILD-TYPE     50     82     76
D1202V2, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        5      4      0      0
  HSP90AA1 WILD-TYPE    173    179    101     20
D1202V3, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                5                173
  CLUS_2                4                179
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        3      0      3
  HSP90AA1 WILD-TYPE     84     80     97
D1202V4, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        1      2      5
  HSP90AA1 WILD-TYPE     88    158    133
D1202V5, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        4      3      1
  HSP90AA1 WILD-TYPE    178    130     71
D1202V6, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        2      2      2      3
  HSP90AA1 WILD-TYPE    110     94     90    183
D1202V7, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                2                 94
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSP90AA1 MUTATED        1      1      2      2      1      0      2
  HSP90AA1 WILD-TYPE     59     49     47     38     62    125     97
D1202V8, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        3      2      1      3
  HSP90AA1 WILD-TYPE    127     76     67    193
D1202V9, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HSP90AA1 MUTATED        1      2      2      0      3      1      0      0
  HSP90AA1 WILD-TYPE     39     60     26     80     66     47     43     28
                    vv
clus                 CLUS_9
  HSP90AA1 MUTATED        0
  HSP90AA1 WILD-TYPE     74
D1202V10, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        2      0      1      0
  HSP90AA1 WILD-TYPE     31     31     26     19
D1202V11, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                1                 26
  CLUS_4                0                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        2      0      0      1
  HSP90AA1 WILD-TYPE     52     10     24     21
D1202V12, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1203) Variable = SATB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SATB1 MUTATED        1      1      0      1
  SATB1 WILD-TYPE     45     57     64     42
D1203V1, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SATB1 MUTATED        1      1      1
  SATB1 WILD-TYPE     50     82     76
D1203V2, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SATB1 MUTATED       10      5      1      0
  SATB1 WILD-TYPE    168    178    100     20
D1203V3, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             5             178
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SATB1 MUTATED        3      5      6
  SATB1 WILD-TYPE     84     75     94
D1203V4, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5              75
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SATB1 MUTATED        0      6     10
  SATB1 WILD-TYPE     89    154    128
D1203V5, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SATB1 MUTATED        8      8      0
  SATB1 WILD-TYPE    174    125     72
D1203V6, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             8             125
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SATB1 MUTATED        6      5      4      2
  SATB1 WILD-TYPE    106     91     88    184
D1203V7, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SATB1 MUTATED        2      3      8      2      0      1      1
  SATB1 WILD-TYPE     58     47     41     38     63    124     98
D1203V8, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             8              41
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SATB1 MUTATED       10      2      2      3
  SATB1 WILD-TYPE    120     76     66    193
D1203V9, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SATB1 MUTATED        1      4      1      1      6      1      3      0
  SATB1 WILD-TYPE     39     58     27     79     63     47     40     28
                 vv
clus              CLUS_9
  SATB1 MUTATED        0
  SATB1 WILD-TYPE     74
D1203V10, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SATB1 MUTATED        0      0      0      4
  SATB1 WILD-TYPE     33     31     27     15
D1203V11, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SATB1 MUTATED        2      0      2      0
  SATB1 WILD-TYPE     52     10     22     22
D1203V12, multiclass
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1204) Variable = FBXO45 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO45 MUTATED        0      0      0      2
  FBXO45 WILD-TYPE     46     58     64     41
D1204V1, multiclass
[1] "Remove cluster labels:" "FBXO45 MUTATED"        
clus
  FBXO45 MUTATED FBXO45 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AY-4071 
"FBXO45 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO45 MUTATED        0      1      1
  FBXO45 WILD-TYPE     51     82     76
D1204V2, multiclass
[1] "Remove cluster labels:" "FBXO45 MUTATED"        
clus
  FBXO45 MUTATED FBXO45 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AY-4071 
"FBXO45 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO45 MUTATED        3      1      2      0
  FBXO45 WILD-TYPE    175    182     99     20
D1204V3, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO45 MUTATED        3      0      1
  FBXO45 WILD-TYPE     84     80     99
D1204V4, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO45 MUTATED        1      3      2
  FBXO45 WILD-TYPE     88    157    136
D1204V5, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO45 MUTATED        3      2      1
  FBXO45 WILD-TYPE    179    131     71
D1204V6, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO45 MUTATED        0      0      4      2
  FBXO45 WILD-TYPE    112     96     88    184
D1204V7, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              0               96
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXO45 MUTATED        1      0      0      1      3      0      1
  FBXO45 WILD-TYPE     59     50     49     39     60    125     98
D1204V8, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO45 MUTATED        1      2      1      2
  FBXO45 WILD-TYPE    129     76     67    194
D1204V9, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXO45 MUTATED        1      2      1      1      1      0      0      0
  FBXO45 WILD-TYPE     39     60     27     79     68     48     43     28
                  vv
clus               CLUS_9
  FBXO45 MUTATED        0
  FBXO45 WILD-TYPE     74
D1204V10, multiclass
        clus
vv       FBXO45 MUTATED FBXO45 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO45 MUTATED        0      1      0      0
  FBXO45 WILD-TYPE     33     30     27     19
D1204V11, multiclass
[1] "Remove cluster labels:" "FBXO45 MUTATED"        
clus
  FBXO45 MUTATED FBXO45 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-G5-6641 
"FBXO45 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO45 MUTATED        0      0      0      1
  FBXO45 WILD-TYPE     54     10     24     21
D1204V12, multiclass
[1] "Remove cluster labels:" "FBXO45 MUTATED"        
clus
  FBXO45 MUTATED FBXO45 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" "FBXO45 WILD-TYPE" 
      TCGA-G5-6641 
"FBXO45 WILD-TYPE" 

Clustering(1205) Variable = MMP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP7 MUTATED        2      0      0      2
  MMP7 WILD-TYPE     44     58     64     41
D1205V1, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP7 MUTATED        3      0      1
  MMP7 WILD-TYPE     48     83     76
D1205V2, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP7 MUTATED        6      2      0      2
  MMP7 WILD-TYPE    172    181    101     18
D1205V3, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP7 MUTATED        3      0      2
  MMP7 WILD-TYPE     84     80     98
D1205V4, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP7 MUTATED        1      4      5
  MMP7 WILD-TYPE     88    156    133
D1205V5, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP7 MUTATED        4      4      2
  MMP7 WILD-TYPE    178    129     70
D1205V6, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP7 MUTATED        2      5      0      3
  MMP7 WILD-TYPE    110     91     92    183
D1205V7, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            0             92
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP7 MUTATED        0      3      1      0      1      1      4
  MMP7 WILD-TYPE     60     47     48     40     62    124     95
D1205V8, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP7 MUTATED        1      2      0      5
  MMP7 WILD-TYPE    129     76     68    191
D1205V9, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MMP7 MUTATED        1      0      0      0      4      1      1      0      1
  MMP7 WILD-TYPE     39     62     28     80     65     47     42     28     73
D1205V10, multiclass
        clus
vv       MMP7 MUTATED MMP7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP7 MUTATED        1      0      0      0
  MMP7 WILD-TYPE     32     31     27     19
D1205V11, multiclass
[1] "Remove cluster labels:" "MMP7 MUTATED"          
clus
  MMP7 MUTATED MMP7 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6142 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-G5-6641 
"MMP7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP7 MUTATED        1      0      0      0
  MMP7 WILD-TYPE     53     10     24     22
D1205V12, multiclass
[1] "Remove cluster labels:" "MMP7 MUTATED"          
clus
  MMP7 MUTATED MMP7 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6142 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" "MMP7 WILD-TYPE" 
    TCGA-G5-6641 
"MMP7 WILD-TYPE" 

Clustering(1206) Variable = TMCO6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO6 MUTATED        1      0      0      2
  TMCO6 WILD-TYPE     45     58     64     41
D1206V1, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO6 MUTATED        2      1      0
  TMCO6 WILD-TYPE     49     82     77
D1206V2, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO6 MUTATED        6      0      1      0
  TMCO6 WILD-TYPE    172    183    100     20
D1206V3, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO6 MUTATED        0      1      3
  TMCO6 WILD-TYPE     87     79     97
D1206V4, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO6 MUTATED        0      3      2
  TMCO6 WILD-TYPE     89    157    136
D1206V5, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMCO6 MUTATED        1      3      1
  TMCO6 WILD-TYPE    181    130     71
D1206V6, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO6 MUTATED        1      2      1      3
  TMCO6 WILD-TYPE    111     94     91    183
D1206V7, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMCO6 MUTATED        1      0      2      0      0      0      4
  TMCO6 WILD-TYPE     59     50     47     40     63    125     95
D1206V8, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO6 MUTATED        2      1      0      4
  TMCO6 WILD-TYPE    128     77     68    192
D1206V9, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMCO6 MUTATED        0      1      1      1      4      0      0      0
  TMCO6 WILD-TYPE     40     61     27     79     65     48     43     28
                 vv
clus              CLUS_9
  TMCO6 MUTATED        0
  TMCO6 WILD-TYPE     74
D1206V10, multiclass
        clus
vv       TMCO6 MUTATED TMCO6 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO6 MUTATED        0      0      0      1
  TMCO6 WILD-TYPE     33     31     27     18
D1206V11, multiclass
[1] "Remove cluster labels:" "TMCO6 MUTATED"         
clus
  TMCO6 MUTATED TMCO6 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-G5-6641 
"TMCO6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMCO6 MUTATED        0      0      1      0
  TMCO6 WILD-TYPE     54     10     23     22
D1206V12, multiclass
[1] "Remove cluster labels:" "TMCO6 MUTATED"         
clus
  TMCO6 MUTATED TMCO6 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" "TMCO6 WILD-TYPE" 
     TCGA-G5-6641 
"TMCO6 WILD-TYPE" 

Clustering(1207) Variable = APAF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APAF1 MUTATED        4      0      0      2
  APAF1 WILD-TYPE     42     58     64     41
D1207V1, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APAF1 MUTATED        5      1      0
  APAF1 WILD-TYPE     46     82     77
D1207V2, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APAF1 MUTATED       11      6      3      0
  APAF1 WILD-TYPE    167    177     98     20
D1207V3, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             6             177
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APAF1 MUTATED        1      6      7
  APAF1 WILD-TYPE     86     74     93
D1207V4, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             6              74
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APAF1 MUTATED        4      6      8
  APAF1 WILD-TYPE     85    154    130
D1207V5, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APAF1 MUTATED        9      6      3
  APAF1 WILD-TYPE    173    127     69
D1207V6, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APAF1 MUTATED        5      4      4      7
  APAF1 WILD-TYPE    107     92     88    179
D1207V7, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APAF1 MUTATED        4      2      4      2      1      1      6
  APAF1 WILD-TYPE     56     48     45     38     62    124     93
D1207V8, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APAF1 MUTATED       10      1      1      7
  APAF1 WILD-TYPE    120     77     67    189
D1207V9, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  APAF1 MUTATED        4      1      2      4      5      0      1      1
  APAF1 WILD-TYPE     36     61     26     76     64     48     42     27
                 vv
clus              CLUS_9
  APAF1 MUTATED        1
  APAF1 WILD-TYPE     73
D1207V10, multiclass
        clus
vv       APAF1 MUTATED APAF1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APAF1 MUTATED        1      0      0      1
  APAF1 WILD-TYPE     32     31     27     18
D1207V11, multiclass
[1] "Remove cluster labels:" "APAF1 MUTATED"         
clus
  APAF1 MUTATED APAF1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APAF1 MUTATED        2      0      0      0
  APAF1 WILD-TYPE     52     10     24     22
D1207V12, multiclass
[1] "Remove cluster labels:" "APAF1 MUTATED"         
clus
  APAF1 MUTATED APAF1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" "APAF1 WILD-TYPE" 

Clustering(1208) Variable = FGB MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGB MUTATED        0      0      0      2
  FGB WILD-TYPE     46     58     64     41
D1208V1, multiclass
[1] "Remove cluster labels:" "FGB MUTATED"           
clus
  FGB MUTATED FGB WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FGB MUTATED        0      1      1
  FGB WILD-TYPE     51     82     76
D1208V2, multiclass
[1] "Remove cluster labels:" "FGB MUTATED"           
clus
  FGB MUTATED FGB WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGB MUTATED        4      1      1      0
  FGB WILD-TYPE    174    182    100     20
D1208V3, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           4           174
  CLUS_2           1           182
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FGB MUTATED        2      2      0
  FGB WILD-TYPE     85     78    100
D1208V4, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           2            85
  CLUS_2           2            78
  CLUS_3           0           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FGB MUTATED        0      3      3
  FGB WILD-TYPE     89    157    135
D1208V5, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           0            89
  CLUS_2           3           157
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FGB MUTATED        2      4      0
  FGB WILD-TYPE    180    129     72
D1208V6, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           2           180
  CLUS_2           4           129
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGB MUTATED        1      1      2      2
  FGB WILD-TYPE    111     95     90    184
D1208V7, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           1           111
  CLUS_2           1            95
  CLUS_3           2            90
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGB MUTATED        1      2      0      1      1      0      1
  FGB WILD-TYPE     59     48     49     39     62    125     98
D1208V8, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           0            49
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGB MUTATED        2      1      0      3
  FGB WILD-TYPE    128     77     68    193
D1208V9, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           2           128
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FGB MUTATED        1      1      1      0      1      1      0      0      1
  FGB WILD-TYPE     39     61     27     80     68     47     43     28     73
D1208V10, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGB MUTATED        0      1      0      1
  FGB WILD-TYPE     33     30     27     18
D1208V11, multiclass
[1] "Remove cluster labels:" "FGB MUTATED"           
clus
  FGB MUTATED FGB WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGB MUTATED        2      0      0      0
  FGB WILD-TYPE     52     10     24     22
D1208V12, multiclass
[1] "Remove cluster labels:" "FGB MUTATED"           
clus
  FGB MUTATED FGB WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 

Clustering(1209) Variable = POLD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLD3 MUTATED        1      0      0      1
  POLD3 WILD-TYPE     45     58     64     42
D1209V1, multiclass
[1] "Remove cluster labels:" "POLD3 MUTATED"         
clus
  POLD3 MUTATED POLD3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AY-4071 
"POLD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLD3 MUTATED        2      0      0
  POLD3 WILD-TYPE     49     83     77
D1209V2, multiclass
[1] "Remove cluster labels:" "POLD3 MUTATED"         
clus
  POLD3 MUTATED POLD3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" "POLD3 WILD-TYPE" 
     TCGA-AY-4071 
"POLD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLD3 MUTATED       10      1      0      0
  POLD3 WILD-TYPE    168    182    101     20
D1209V3, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLD3 MUTATED        4      0      5
  POLD3 WILD-TYPE     83     80     95
D1209V4, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLD3 MUTATED        1      2      7
  POLD3 WILD-TYPE     88    158    131
D1209V5, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLD3 MUTATED        5      4      1
  POLD3 WILD-TYPE    177    129     71
D1209V6, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLD3 MUTATED        0      6      3      2
  POLD3 WILD-TYPE    112     90     89    184
D1209V7, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POLD3 MUTATED        0      3      5      1      0      0      2
  POLD3 WILD-TYPE     60     47     44     39     63    125     97
D1209V8, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLD3 MUTATED        3      2      1      5
  POLD3 WILD-TYPE    127     76     67    191
D1209V9, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  POLD3 MUTATED        1      2      1      0      3      0      2      1
  POLD3 WILD-TYPE     39     60     27     80     66     48     41     27
                 vv
clus              CLUS_9
  POLD3 MUTATED        1
  POLD3 WILD-TYPE     73
D1209V10, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLD3 MUTATED        2      0      0      1
  POLD3 WILD-TYPE     31     31     27     18
D1209V11, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLD3 MUTATED        3      0      0      0
  POLD3 WILD-TYPE     51     10     24     22
D1209V12, multiclass
        clus
vv       POLD3 MUTATED POLD3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1210) Variable = CYP7B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        2      0      0      3
  CYP7B1 WILD-TYPE     44     58     64     40
D1210V1, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        3      1      1
  CYP7B1 WILD-TYPE     48     82     76
D1210V2, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED       15      5      1      0
  CYP7B1 WILD-TYPE    163    178    100     20
D1210V3, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        5      1     10
  CYP7B1 WILD-TYPE     82     79     90
D1210V4, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        1     10      9
  CYP7B1 WILD-TYPE     88    150    129
D1210V5, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2             10              150
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        8     10      2
  CYP7B1 WILD-TYPE    174    123     70
D1210V6, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              8              174
  CLUS_2             10              123
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        1      6      7      7
  CYP7B1 WILD-TYPE    111     90     85    179
D1210V7, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              7               85
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP7B1 MUTATED        2      3      5      1      2      0      8
  CYP7B1 WILD-TYPE     58     47     44     39     61    125     91
D1210V8, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        7      4      0      8
  CYP7B1 WILD-TYPE    123     74     68    188
D1210V9, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP7B1 MUTATED        2      4      1      3      6      1      0      0
  CYP7B1 WILD-TYPE     38     58     27     77     63     47     43     28
                  vv
clus               CLUS_9
  CYP7B1 MUTATED        2
  CYP7B1 WILD-TYPE     72
D1210V10, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        2      0      1      2
  CYP7B1 WILD-TYPE     31     31     26     17
D1210V11, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        3      0      1      1
  CYP7B1 WILD-TYPE     51     10     23     21
D1210V12, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1211) Variable = ZNF605 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF605 MUTATED        1      0      0      0
  ZNF605 WILD-TYPE     45     58     64     43
D1211V1, multiclass
[1] "Remove cluster labels:" "ZNF605 MUTATED"        
clus
  ZNF605 MUTATED ZNF605 WILD-TYPE 
               1              210 
      TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3809 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF605 MUTATED        1      0      0
  ZNF605 WILD-TYPE     50     83     77
D1211V2, multiclass
[1] "Remove cluster labels:" "ZNF605 MUTATED"        
clus
  ZNF605 MUTATED ZNF605 WILD-TYPE 
               1              210 
      TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677       TCGA-A6-2678 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808       TCGA-A6-3809 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ZNF605 WILD-TYPE" "ZNF605 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF605 MUTATED        6      1      0      1
  ZNF605 WILD-TYPE    172    182    101     19
D1211V3, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF605 MUTATED        4      1      2
  ZNF605 WILD-TYPE     83     79     98
D1211V4, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF605 MUTATED        1      2      4
  ZNF605 WILD-TYPE     88    158    134
D1211V5, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF605 MUTATED        3      2      2
  ZNF605 WILD-TYPE    179    131     70
D1211V6, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF605 MUTATED        1      4      2      1
  ZNF605 WILD-TYPE    111     92     90    185
D1211V7, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF605 MUTATED        1      2      3      1      0      0      1
  ZNF605 WILD-TYPE     59     48     46     39     63    125     98
D1211V8, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF605 MUTATED        2      2      1      3
  ZNF605 WILD-TYPE    128     76     67    193
D1211V9, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF605 MUTATED        2      1      1      0      2      0      1      0
  ZNF605 WILD-TYPE     38     61     27     80     67     48     42     28
                  vv
clus               CLUS_9
  ZNF605 MUTATED        1
  ZNF605 WILD-TYPE     73
D1211V10, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF605 MUTATED        2      0      0      1
  ZNF605 WILD-TYPE     31     31     27     18
D1211V11, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF605 MUTATED        2      0      1      0
  ZNF605 WILD-TYPE     52     10     23     22
D1211V12, multiclass
        clus
vv       ZNF605 MUTATED ZNF605 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1212) Variable = ITPR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        2      0      1      5
  ITPR2 WILD-TYPE     44     58     63     38
D1212V1, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        3      3      2
  ITPR2 WILD-TYPE     48     80     75
D1212V2, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED       20      5      2      1
  ITPR2 WILD-TYPE    158    178     99     19
D1212V3, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            20             158
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        9      3      8
  ITPR2 WILD-TYPE     78     77     92
D1212V4, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        5      5     13
  ITPR2 WILD-TYPE     84    155    125
D1212V5, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             5             155
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED       13      7      3
  ITPR2 WILD-TYPE    169    126     69
D1212V6, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            13             169
  CLUS_2             7             126
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        5      8      5     10
  ITPR2 WILD-TYPE    107     88     87    176
D1212V7, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITPR2 MUTATED        4      3      7      3      2      3      6
  ITPR2 WILD-TYPE     56     47     42     37     61    122     93
D1212V8, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             7              42
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED       10      3      3     11
  ITPR2 WILD-TYPE    120     75     65    185
D1212V9, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             3              65
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITPR2 MUTATED        5      4      3      2      6      0      3      0
  ITPR2 WILD-TYPE     35     58     25     78     63     48     40     28
                 vv
clus              CLUS_9
  ITPR2 MUTATED        4
  ITPR2 WILD-TYPE     70
D1212V10, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        1      1      0      3
  ITPR2 WILD-TYPE     32     30     27     16
D1212V11, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        2      1      1      1
  ITPR2 WILD-TYPE     52      9     23     21
D1212V12, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1213) Variable = ZBTB33 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB33 MUTATED        2      0      1      0
  ZBTB33 WILD-TYPE     44     58     63     43
D1213V1, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB33 MUTATED        2      1      0
  ZBTB33 WILD-TYPE     49     82     77
D1213V2, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB33 MUTATED       12      1      3      0
  ZBTB33 WILD-TYPE    166    182     98     20
D1213V3, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB33 MUTATED        2      2      7
  ZBTB33 WILD-TYPE     85     78     93
D1213V4, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB33 MUTATED        3      4      8
  ZBTB33 WILD-TYPE     86    156    130
D1213V5, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB33 MUTATED        6      7      2
  ZBTB33 WILD-TYPE    176    126     70
D1213V6, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB33 MUTATED        2      5      4      5
  ZBTB33 WILD-TYPE    110     91     88    181
D1213V7, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB33 MUTATED        0      4      6      0      1      0      5
  ZBTB33 WILD-TYPE     60     46     43     40     62    125     94
D1213V8, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              4               46
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB33 MUTATED        8      1      0      7
  ZBTB33 WILD-TYPE    122     77     68    189
D1213V9, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZBTB33 MUTATED        2      2      1      2      6      0      1      1
  ZBTB33 WILD-TYPE     38     60     27     78     63     48     42     27
                  vv
clus               CLUS_9
  ZBTB33 MUTATED        1
  ZBTB33 WILD-TYPE     73
D1213V10, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB33 MUTATED        0      0      0      3
  ZBTB33 WILD-TYPE     33     31     27     16
D1213V11, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB33 MUTATED        2      0      1      0
  ZBTB33 WILD-TYPE     52     10     23     22
D1213V12, multiclass
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1214) Variable = PHF21A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        3      0      0      2
  PHF21A WILD-TYPE     43     58     64     41
D1214V1, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHF21A MUTATED        4      0      1
  PHF21A WILD-TYPE     47     83     76
D1214V2, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED       11      0      1      0
  PHF21A WILD-TYPE    167    183    100     20
D1214V3, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHF21A MUTATED        3      1      3
  PHF21A WILD-TYPE     84     79     97
D1214V4, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHF21A MUTATED        1      2      6
  PHF21A WILD-TYPE     88    158    132
D1214V5, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHF21A MUTATED        5      2      2
  PHF21A WILD-TYPE    177    131     70
D1214V6, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              5              177
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        0      4      3      5
  PHF21A WILD-TYPE    112     92     89    181
D1214V7, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHF21A MUTATED        1      1      5      0      0      1      4
  PHF21A WILD-TYPE     59     49     44     40     63    124     95
D1214V8, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        2      2      0      8
  PHF21A WILD-TYPE    128     76     68    188
D1214V9, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PHF21A MUTATED        0      2      1      1      5      0      0      2
  PHF21A WILD-TYPE     40     60     27     79     64     48     43     26
                  vv
clus               CLUS_9
  PHF21A MUTATED        1
  PHF21A WILD-TYPE     73
D1214V10, multiclass
        clus
vv       PHF21A MUTATED PHF21A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        1      0      0      1
  PHF21A WILD-TYPE     32     31     27     18
D1214V11, multiclass
[1] "Remove cluster labels:" "PHF21A MUTATED"        
clus
  PHF21A MUTATED PHF21A WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF21A MUTATED        2      0      0      0
  PHF21A WILD-TYPE     52     10     24     22
D1214V12, multiclass
[1] "Remove cluster labels:" "PHF21A MUTATED"        
clus
  PHF21A MUTATED PHF21A WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" "PHF21A WILD-TYPE" 

Clustering(1215) Variable = INADL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INADL MUTATED        2      1      0      1
  INADL WILD-TYPE     44     57     64     42
D1215V1, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INADL MUTATED        2      1      1
  INADL WILD-TYPE     49     82     76
D1215V2, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INADL MUTATED       13      2      0      1
  INADL WILD-TYPE    165    181    101     19
D1215V3, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INADL MUTATED        5      0      6
  INADL WILD-TYPE     82     80     94
D1215V4, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INADL MUTATED        3      4      7
  INADL WILD-TYPE     86    156    131
D1215V5, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INADL MUTATED        9      4      1
  INADL WILD-TYPE    173    129     71
D1215V6, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             9             173
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INADL MUTATED        1      7      3      5
  INADL WILD-TYPE    111     89     89    181
D1215V7, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INADL MUTATED        2      2      5      2      1      1      3
  INADL WILD-TYPE     58     48     44     38     62    124     96
D1215V8, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INADL MUTATED        7      2      1      6
  INADL WILD-TYPE    123     76     67    190
D1215V9, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INADL MUTATED        2      3      0      1      5      1      2      0
  INADL WILD-TYPE     38     59     28     79     64     47     41     28
                 vv
clus              CLUS_9
  INADL MUTATED        2
  INADL WILD-TYPE     72
D1215V10, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INADL MUTATED        2      0      1      1
  INADL WILD-TYPE     31     31     26     18
D1215V11, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INADL MUTATED        2      0      1      1
  INADL WILD-TYPE     52     10     23     21
D1215V12, multiclass
        clus
vv       INADL MUTATED INADL WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1216) Variable = DDX17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        1      0      0      2
  DDX17 WILD-TYPE     45     58     64     41
D1216V1, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        3      0      0
  DDX17 WILD-TYPE     48     83     77
D1216V2, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        7      0      1      0
  DDX17 WILD-TYPE    171    183    100     20
D1216V3, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        1      0      4
  DDX17 WILD-TYPE     86     80     96
D1216V4, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        1      4      3
  DDX17 WILD-TYPE     88    156    135
D1216V5, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        3      4      1
  DDX17 WILD-TYPE    179    129     71
D1216V6, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        0      3      2      3
  DDX17 WILD-TYPE    112     93     90    183
D1216V7, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX17 MUTATED        0      0      4      0      0      0      4
  DDX17 WILD-TYPE     60     50     45     40     63    125     95
D1216V8, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        3      1      0      3
  DDX17 WILD-TYPE    127     77     68    193
D1216V9, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX17 MUTATED        0      1      0      1      4      0      1      0
  DDX17 WILD-TYPE     40     61     28     79     65     48     42     28
                 vv
clus              CLUS_9
  DDX17 MUTATED        0
  DDX17 WILD-TYPE     74
D1216V10, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        1      0      0      3
  DDX17 WILD-TYPE     32     31     27     16
D1216V11, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        2      0      2      0
  DDX17 WILD-TYPE     52     10     22     22
D1216V12, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1217) Variable = DMXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED        9      0      0      5
  DMXL2 WILD-TYPE     37     58     64     38
D1217V1, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             9              37
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DMXL2 MUTATED        9      2      3
  DMXL2 WILD-TYPE     42     81     74
D1217V2, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             9              42
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED       29      7      1      0
  DMXL2 WILD-TYPE    149    176    100     20
D1217V3, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            29             149
  CLUS_2             7             176
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DMXL2 MUTATED        8      3     13
  DMXL2 WILD-TYPE     79     77     87
D1217V4, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3            13              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DMXL2 MUTATED        4     15     14
  DMXL2 WILD-TYPE     85    145    124
D1217V5, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            15             145
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DMXL2 MUTATED       19      9      5
  DMXL2 WILD-TYPE    163    124     67
D1217V6, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            19             163
  CLUS_2             9             124
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED        3      7     12     15
  DMXL2 WILD-TYPE    109     89     80    171
D1217V7, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             7              89
  CLUS_3            12              80
  CLUS_4            15             171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DMXL2 MUTATED        2      3     10      1      6      2     13
  DMXL2 WILD-TYPE     58     47     39     39     57    123     86
D1217V8, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3            10              39
  CLUS_4             1              39
  CLUS_5             6              57
  CLUS_6             2             123
  CLUS_7            13              86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED        8     10      1     17
  DMXL2 WILD-TYPE    122     68     67    179
D1217V9, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2            10              68
  CLUS_3             1              67
  CLUS_4            17             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DMXL2 MUTATED        4      9      2      5     10      2      1      2
  DMXL2 WILD-TYPE     36     53     26     75     59     46     42     26
                 vv
clus              CLUS_9
  DMXL2 MUTATED        1
  DMXL2 WILD-TYPE     73
D1217V10, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             9              53
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5            10              59
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED        2      3      0      4
  DMXL2 WILD-TYPE     31     28     27     15
D1217V11, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED        7      1      0      1
  DMXL2 WILD-TYPE     47      9     24     21
D1217V12, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1218) Variable = DPAGT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        1      0      1      0
  DPAGT1 WILD-TYPE     45     58     63     43
D1218V1, multiclass
[1] "Remove cluster labels:" "DPAGT1 MUTATED"        
clus
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00H 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AY-4071 
"DPAGT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DPAGT1 MUTATED        1      0      1
  DPAGT1 WILD-TYPE     50     83     76
D1218V2, multiclass
[1] "Remove cluster labels:" "DPAGT1 MUTATED"        
clus
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00H 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AY-4071 
"DPAGT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        5      2      1      0
  DPAGT1 WILD-TYPE    173    181    100     20
D1218V3, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DPAGT1 MUTATED        2      2      2
  DPAGT1 WILD-TYPE     85     78     98
D1218V4, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DPAGT1 MUTATED        0      3      4
  DPAGT1 WILD-TYPE     89    157    134
D1218V5, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DPAGT1 MUTATED        3      2      2
  DPAGT1 WILD-TYPE    179    131     70
D1218V6, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        3      1      2      2
  DPAGT1 WILD-TYPE    109     95     90    184
D1218V7, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DPAGT1 MUTATED        3      1      1      0      1      1      1
  DPAGT1 WILD-TYPE     57     49     48     40     62    124     98
D1218V8, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        5      1      0      2
  DPAGT1 WILD-TYPE    125     77     68    194
D1218V9, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DPAGT1 MUTATED        0      2      0      2      1      3      0      0
  DPAGT1 WILD-TYPE     40     60     28     78     68     45     43     28
                  vv
clus               CLUS_9
  DPAGT1 MUTATED        0
  DPAGT1 WILD-TYPE     74
D1218V10, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              3               45
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        0      0      0      1
  DPAGT1 WILD-TYPE     33     31     27     18
D1218V11, multiclass
[1] "Remove cluster labels:" "DPAGT1 MUTATED"        
clus
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6534       TCGA-D5-6536 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-G5-6641 
"DPAGT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        0      0      0      1
  DPAGT1 WILD-TYPE     54     10     24     21
D1218V12, multiclass
[1] "Remove cluster labels:" "DPAGT1 MUTATED"        
clus
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6534       TCGA-D5-6536 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-G5-6641 
"DPAGT1 WILD-TYPE" 

Clustering(1219) Variable = SLC38A9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A9 MUTATED        2      0      0      2
  SLC38A9 WILD-TYPE     44     58     64     41
D1219V1, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A9 MUTATED        2      1      1
  SLC38A9 WILD-TYPE     49     82     76
D1219V2, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A9 MUTATED       11      0      0      0
  SLC38A9 WILD-TYPE    167    183    101     20
D1219V3, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A9 MUTATED        5      0      3
  SLC38A9 WILD-TYPE     82     80     97
D1219V4, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A9 MUTATED        1      3      6
  SLC38A9 WILD-TYPE     88    157    132
D1219V5, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A9 MUTATED        5      4      1
  SLC38A9 WILD-TYPE    177    129     71
D1219V6, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A9 MUTATED        0      5      3      4
  SLC38A9 WILD-TYPE    112     91     89    182
D1219V7, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC38A9 MUTATED        1      1      6      0      0      1      3
  SLC38A9 WILD-TYPE     59     49     43     40     63    124     96
D1219V8, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A9 MUTATED        4      2      0      6
  SLC38A9 WILD-TYPE    126     76     68    190
D1219V9, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC38A9 MUTATED        1      3      0      1      6      0      0      0
  SLC38A9 WILD-TYPE     39     59     28     79     63     48     43     28
                   vv
clus                CLUS_9
  SLC38A9 MUTATED        1
  SLC38A9 WILD-TYPE     73
D1219V10, multiclass
        clus
vv       SLC38A9 MUTATED SLC38A9 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A9 MUTATED        0      0      0      1
  SLC38A9 WILD-TYPE     33     31     27     18
D1219V11, multiclass
[1] "Remove cluster labels:" "SLC38A9 MUTATED"       
clus
  SLC38A9 MUTATED SLC38A9 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-G5-6641 
"SLC38A9 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A9 MUTATED        1      0      0      0
  SLC38A9 WILD-TYPE     53     10     24     22
D1219V12, multiclass
[1] "Remove cluster labels:" "SLC38A9 MUTATED"       
clus
  SLC38A9 MUTATED SLC38A9 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" "SLC38A9 WILD-TYPE" 
       TCGA-G5-6641 
"SLC38A9 WILD-TYPE" 

Clustering(1220) Variable = HIST2H2AC MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST2H2AC MUTATED        0      0      0      0
  HIST2H2AC WILD-TYPE     46     58     64     43
D1220V1, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST2H2AC MUTATED        0      0      0
  HIST2H2AC WILD-TYPE     51     83     77
D1220V2, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST2H2AC MUTATED        2      3      0      1
  HIST2H2AC WILD-TYPE    176    180    101     19
D1220V3, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 2                 176
  CLUS_2                 3                 180
  CLUS_3                 0                 101
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST2H2AC MUTATED        4      0      2
  HIST2H2AC WILD-TYPE     83     80     98
D1220V4, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 4                  83
  CLUS_2                 0                  80
  CLUS_3                 2                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST2H2AC MUTATED        0      2      1
  HIST2H2AC WILD-TYPE     89    158    137
D1220V5, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 2                 158
  CLUS_3                 1                 137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST2H2AC MUTATED        2      0      1
  HIST2H2AC WILD-TYPE    180    133     71
D1220V6, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 2                 180
  CLUS_2                 0                 133
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST2H2AC MUTATED        0      3      3      0
  HIST2H2AC WILD-TYPE    112     93     89    186
D1220V7, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 0                 112
  CLUS_2                 3                  93
  CLUS_3                 3                  89
  CLUS_4                 0                 186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST2H2AC MUTATED        0      1      2      1      2      0      0
  HIST2H2AC WILD-TYPE     60     49     47     39     61    125     99
D1220V8, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 1                  49
  CLUS_3                 2                  47
  CLUS_4                 1                  39
  CLUS_5                 2                  61
  CLUS_6                 0                 125
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST2H2AC MUTATED        2      4      0      0
  HIST2H2AC WILD-TYPE    128     74     68    196
D1220V9, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 2                 128
  CLUS_2                 4                  74
  CLUS_3                 0                  68
  CLUS_4                 0                 196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST2H2AC MUTATED        0      4      1      1      0      0      0      0
  HIST2H2AC WILD-TYPE     40     58     27     79     69     48     43     28
                     vv
clus                  CLUS_9
  HIST2H2AC MUTATED        0
  HIST2H2AC WILD-TYPE     74
D1220V10, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 4                  58
  CLUS_3                 1                  27
  CLUS_4                 1                  79
  CLUS_5                 0                  69
  CLUS_6                 0                  48
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST2H2AC MUTATED        0      2      1      0
  HIST2H2AC WILD-TYPE     33     29     26     19
D1220V11, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 0                  33
  CLUS_2                 2                  29
  CLUS_3                 1                  26
  CLUS_4                 0                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST2H2AC MUTATED        0      2      0      1
  HIST2H2AC WILD-TYPE     54      8     24     21
D1220V12, multiclass
        clus
vv       HIST2H2AC MUTATED HIST2H2AC WILD-TYPE
  CLUS_1                 0                  54
  CLUS_2                 2                   8
  CLUS_3                 0                  24
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1221) Variable = SLCO1B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B1 MUTATED        2      0      1      4
  SLCO1B1 WILD-TYPE     44     58     63     39
D1221V1, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B1 MUTATED        3      3      1
  SLCO1B1 WILD-TYPE     48     80     76
D1221V2, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B1 MUTATED       13      5      5      0
  SLCO1B1 WILD-TYPE    165    178     96     20
D1221V3, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               5               178
  CLUS_3               5                96
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B1 MUTATED        6      5      4
  SLCO1B1 WILD-TYPE     81     75     96
D1221V4, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               5                75
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B1 MUTATED        3      8      7
  SLCO1B1 WILD-TYPE     86    152    131
D1221V5, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               8               152
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B1 MUTATED       11      5      2
  SLCO1B1 WILD-TYPE    171    128     70
D1221V6, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B1 MUTATED        8      3      4      8
  SLCO1B1 WILD-TYPE    104     93     88    178
D1221V7, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               8               104
  CLUS_2               3                93
  CLUS_3               4                88
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLCO1B1 MUTATED        6      1      2      4      3      1      6
  SLCO1B1 WILD-TYPE     54     49     47     36     60    124     93
D1221V8, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               6                54
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               4                36
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B1 MUTATED        4      6      4      8
  SLCO1B1 WILD-TYPE    126     72     64    188
D1221V9, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               6                72
  CLUS_3               4                64
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLCO1B1 MUTATED        2      6      1      3      6      1      3      0
  SLCO1B1 WILD-TYPE     38     56     27     77     63     47     40     28
                   vv
clus                CLUS_9
  SLCO1B1 MUTATED        0
  SLCO1B1 WILD-TYPE     74
D1221V10, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               6                56
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               3                40
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B1 MUTATED        1      3      1      2
  SLCO1B1 WILD-TYPE     32     28     26     17
D1221V11, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                28
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B1 MUTATED        3      2      1      1
  SLCO1B1 WILD-TYPE     51      8     23     21
D1221V12, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               2                 8
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1222) Variable = LBP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBP MUTATED        1      0      0      0
  LBP WILD-TYPE     45     58     64     43
D1222V1, multiclass
[1] "Remove cluster labels:" "LBP MUTATED"           
clus
  LBP MUTATED LBP WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3875    TCGA-AA-3877 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LBP MUTATED        1      0      0
  LBP WILD-TYPE     50     83     77
D1222V2, multiclass
[1] "Remove cluster labels:" "LBP MUTATED"           
clus
  LBP MUTATED LBP WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3875    TCGA-AA-3877 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" "LBP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBP MUTATED        3      1      4      0
  LBP WILD-TYPE    175    182     97     20
D1222V3, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           3           175
  CLUS_2           1           182
  CLUS_3           4            97
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LBP MUTATED        1      3      3
  LBP WILD-TYPE     86     77     97
D1222V4, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           1            86
  CLUS_2           3            77
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LBP MUTATED        1      0      5
  LBP WILD-TYPE     88    160    133
D1222V5, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           1            88
  CLUS_2           0           160
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LBP MUTATED        6      0      0
  LBP WILD-TYPE    176    133     72
D1222V6, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           6           176
  CLUS_2           0           133
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBP MUTATED        2      3      3      0
  LBP WILD-TYPE    110     93     89    186
D1222V7, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           2           110
  CLUS_2           3            93
  CLUS_3           3            89
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LBP MUTATED        1      2      3      0      1      0      1
  LBP WILD-TYPE     59     48     46     40     62    125     98
D1222V8, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBP MUTATED        6      0      1      1
  LBP WILD-TYPE    124     78     67    195
D1222V9, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           6           124
  CLUS_2           0            78
  CLUS_3           1            67
  CLUS_4           1           195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LBP MUTATED        0      3      1      1      1      0      1      1      0
  LBP WILD-TYPE     40     59     27     79     68     48     42     27     74
D1222V10, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           0            40
  CLUS_2           3            59
  CLUS_3           1            27
  CLUS_4           1            79
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           1            27
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBP MUTATED        0      1      1      1
  LBP WILD-TYPE     33     30     26     18
D1222V11, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           0            33
  CLUS_2           1            30
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LBP MUTATED        2      0      1      0
  LBP WILD-TYPE     52     10     23     22
D1222V12, multiclass
        clus
vv       LBP MUTATED LBP WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1223) Variable = THUMPD3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THUMPD3 MUTATED        1      0      0      2
  THUMPD3 WILD-TYPE     45     58     64     41
D1223V1, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  THUMPD3 MUTATED        1      1      1
  THUMPD3 WILD-TYPE     50     82     76
D1223V2, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THUMPD3 MUTATED        7      1      2      2
  THUMPD3 WILD-TYPE    171    182     99     18
D1223V3, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  THUMPD3 MUTATED        6      1      2
  THUMPD3 WILD-TYPE     81     79     98
D1223V4, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  THUMPD3 MUTATED        0      4      8
  THUMPD3 WILD-TYPE     89    156    130
D1223V5, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  THUMPD3 MUTATED        7      5      0
  THUMPD3 WILD-TYPE    175    128     72
D1223V6, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               5               128
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THUMPD3 MUTATED        1      4      4      3
  THUMPD3 WILD-TYPE    111     92     88    183
D1223V7, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               4                88
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THUMPD3 MUTATED        1      2      2      2      3      0      2
  THUMPD3 WILD-TYPE     59     48     47     38     60    125     97
D1223V8, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THUMPD3 MUTATED        4      3      0      4
  THUMPD3 WILD-TYPE    126     75     68    192
D1223V9, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  THUMPD3 MUTATED        1      3      3      0      2      0      1      0
  THUMPD3 WILD-TYPE     39     59     25     80     67     48     42     28
                   vv
clus                CLUS_9
  THUMPD3 MUTATED        1
  THUMPD3 WILD-TYPE     73
D1223V10, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               3                25
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THUMPD3 MUTATED        0      3      0      0
  THUMPD3 WILD-TYPE     33     28     27     19
D1223V11, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               3                28
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THUMPD3 MUTATED        2      1      0      0
  THUMPD3 WILD-TYPE     52      9     24     22
D1223V12, multiclass
        clus
vv       THUMPD3 MUTATED THUMPD3 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1224) Variable = GPSM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        0      0      0      1
  GPSM2 WILD-TYPE     46     58     64     42
D1224V1, multiclass
[1] "Remove cluster labels:" "GPSM2 MUTATED"         
clus
  GPSM2 MUTATED GPSM2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        0      1      0
  GPSM2 WILD-TYPE     51     82     77
D1224V2, multiclass
[1] "Remove cluster labels:" "GPSM2 MUTATED"         
clus
  GPSM2 MUTATED GPSM2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GPSM2 WILD-TYPE" "GPSM2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED       10      2      0      1
  GPSM2 WILD-TYPE    168    181    101     19
D1224V3, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        5      1      5
  GPSM2 WILD-TYPE     82     79     95
D1224V4, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        3      4      5
  GPSM2 WILD-TYPE     86    156    133
D1224V5, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM2 MUTATED        4      6      2
  GPSM2 WILD-TYPE    178    127     70
D1224V6, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        1      6      3      3
  GPSM2 WILD-TYPE    111     90     89    183
D1224V7, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPSM2 MUTATED        0      2      4      3      1      0      3
  GPSM2 WILD-TYPE     60     48     45     37     62    125     96
D1224V8, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        6      2      0      5
  GPSM2 WILD-TYPE    124     76     68    191
D1224V9, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPSM2 MUTATED        1      2      1      0      3      2      2      0
  GPSM2 WILD-TYPE     39     60     27     80     66     46     41     28
                 vv
clus              CLUS_9
  GPSM2 MUTATED        2
  GPSM2 WILD-TYPE     72
D1224V10, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        0      1      1      2
  GPSM2 WILD-TYPE     33     30     26     17
D1224V11, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM2 MUTATED        2      0      2      0
  GPSM2 WILD-TYPE     52     10     22     22
D1224V12, multiclass
        clus
vv       GPSM2 MUTATED GPSM2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1225) Variable = OR4B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4B1 MUTATED        1      0      0      1
  OR4B1 WILD-TYPE     45     58     64     42
D1225V1, multiclass
[1] "Remove cluster labels:" "OR4B1 MUTATED"         
clus
  OR4B1 MUTATED OR4B1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AY-4071 
"OR4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4B1 MUTATED        1      0      1
  OR4B1 WILD-TYPE     50     83     76
D1225V2, multiclass
[1] "Remove cluster labels:" "OR4B1 MUTATED"         
clus
  OR4B1 MUTATED OR4B1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AY-4071 
"OR4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4B1 MUTATED        5      0      1      0
  OR4B1 WILD-TYPE    173    183    100     20
D1225V3, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4B1 MUTATED        2      0      2
  OR4B1 WILD-TYPE     85     80     98
D1225V4, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4B1 MUTATED        2      1      2
  OR4B1 WILD-TYPE     87    159    136
D1225V5, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4B1 MUTATED        4      1      0
  OR4B1 WILD-TYPE    178    132     72
D1225V6, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4B1 MUTATED        0      3      1      2
  OR4B1 WILD-TYPE    112     93     91    184
D1225V7, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4B1 MUTATED        2      1      1      1      0      0      1
  OR4B1 WILD-TYPE     58     49     48     39     63    125     98
D1225V8, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4B1 MUTATED        3      0      1      2
  OR4B1 WILD-TYPE    127     78     67    194
D1225V9, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4B1 MUTATED        0      1      0      1      3      0      1      0
  OR4B1 WILD-TYPE     40     61     28     79     66     48     42     28
                 vv
clus              CLUS_9
  OR4B1 MUTATED        0
  OR4B1 WILD-TYPE     74
D1225V10, multiclass
        clus
vv       OR4B1 MUTATED OR4B1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4B1 MUTATED        0      0      1      1
  OR4B1 WILD-TYPE     33     31     26     18
D1225V11, multiclass
[1] "Remove cluster labels:" "OR4B1 MUTATED"         
clus
  OR4B1 MUTATED OR4B1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6547      TCGA-AH-6549 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6922 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4B1 MUTATED        1      0      1      0
  OR4B1 WILD-TYPE     53     10     23     22
D1225V12, multiclass
[1] "Remove cluster labels:" "OR4B1 MUTATED"         
clus
  OR4B1 MUTATED OR4B1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6547      TCGA-AH-6549 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6922 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" "OR4B1 WILD-TYPE" 

Clustering(1226) Variable = LEO1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEO1 MUTATED        0      0      0      4
  LEO1 WILD-TYPE     46     58     64     39
D1226V1, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEO1 MUTATED        2      0      2
  LEO1 WILD-TYPE     49     83     75
D1226V2, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEO1 MUTATED        9      2      1      0
  LEO1 WILD-TYPE    169    181    100     20
D1226V3, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEO1 MUTATED        4      1      3
  LEO1 WILD-TYPE     83     79     97
D1226V4, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEO1 MUTATED        2      3      5
  LEO1 WILD-TYPE     87    157    133
D1226V5, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LEO1 MUTATED        4      5      1
  LEO1 WILD-TYPE    178    128     71
D1226V6, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEO1 MUTATED        0      4      4      4
  LEO1 WILD-TYPE    112     92     88    182
D1226V7, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LEO1 MUTATED        0      2      2      1      3      0      4
  LEO1 WILD-TYPE     60     48     47     39     60    125     95
D1226V8, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEO1 MUTATED        1      4      1      5
  LEO1 WILD-TYPE    129     74     67    191
D1226V9, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LEO1 MUTATED        1      3      1      1      3      0      0      0      2
  LEO1 WILD-TYPE     39     59     27     79     66     48     43     28     72
D1226V10, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEO1 MUTATED        1      1      0      1
  LEO1 WILD-TYPE     32     30     27     18
D1226V11, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEO1 MUTATED        2      0      1      0
  LEO1 WILD-TYPE     52     10     23     22
D1226V12, multiclass
        clus
vv       LEO1 MUTATED LEO1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1227) Variable = SETX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETX MUTATED        5      1      1      7
  SETX WILD-TYPE     41     57     63     36
D1227V1, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SETX MUTATED        6      3      5
  SETX WILD-TYPE     45     80     72
D1227V2, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            6             45
  CLUS_2            3             80
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETX MUTATED       20      6      6      1
  SETX WILD-TYPE    158    177     95     19
D1227V3, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1           20            158
  CLUS_2            6            177
  CLUS_3            6             95
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SETX MUTATED        7      3      9
  SETX WILD-TYPE     80     77     91
D1227V4, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            7             80
  CLUS_2            3             77
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SETX MUTATED        4     14     11
  SETX WILD-TYPE     85    146    127
D1227V5, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            4             85
  CLUS_2           14            146
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SETX MUTATED       14     12      3
  SETX WILD-TYPE    168    121     69
D1227V6, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1           14            168
  CLUS_2           12            121
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETX MUTATED        2      9      7     16
  SETX WILD-TYPE    110     87     85    170
D1227V7, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            2            110
  CLUS_2            9             87
  CLUS_3            7             85
  CLUS_4           16            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETX MUTATED        2      3     10      1      3      4     11
  SETX WILD-TYPE     58     47     39     39     60    121     88
D1227V8, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3           10             39
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            4            121
  CLUS_7           11             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETX MUTATED       10      5      2     16
  SETX WILD-TYPE    120     73     66    180
D1227V9, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1           10            120
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SETX MUTATED        3      5      3      3     12      1      0      0      6
  SETX WILD-TYPE     37     57     25     77     57     47     43     28     68
D1227V10, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            3             37
  CLUS_2            5             57
  CLUS_3            3             25
  CLUS_4            3             77
  CLUS_5           12             57
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            6             68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETX MUTATED        2      0      0      5
  SETX WILD-TYPE     31     31     27     14
D1227V11, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETX MUTATED        4      0      2      1
  SETX WILD-TYPE     50     10     22     21
D1227V12, multiclass
        clus
vv       SETX MUTATED SETX WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1228) Variable = ZBTB5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB5 MUTATED        0      0      0      1
  ZBTB5 WILD-TYPE     46     58     64     42
D1228V1, multiclass
[1] "Remove cluster labels:" "ZBTB5 MUTATED"         
clus
  ZBTB5 MUTATED ZBTB5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB5 MUTATED        1      0      0
  ZBTB5 WILD-TYPE     50     83     77
D1228V2, multiclass
[1] "Remove cluster labels:" "ZBTB5 MUTATED"         
clus
  ZBTB5 MUTATED ZBTB5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ZBTB5 WILD-TYPE" "ZBTB5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB5 MUTATED        7      0      0      0
  ZBTB5 WILD-TYPE    171    183    101     20
D1228V3, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB5 MUTATED        4      0      2
  ZBTB5 WILD-TYPE     83     80     98
D1228V4, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB5 MUTATED        1      0      4
  ZBTB5 WILD-TYPE     88    160    134
D1228V5, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZBTB5 MUTATED        4      0      1
  ZBTB5 WILD-TYPE    178    133     71
D1228V6, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB5 MUTATED        0      0      6      1
  ZBTB5 WILD-TYPE    112     96     86    185
D1228V7, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             6              86
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB5 MUTATED        0      0      5      0      1      0      1
  ZBTB5 WILD-TYPE     60     50     44     40     62    125     98
D1228V8, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB5 MUTATED        1      3      0      3
  ZBTB5 WILD-TYPE    129     75     68    193
D1228V9, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZBTB5 MUTATED        0      4      0      1      2      0      0      0
  ZBTB5 WILD-TYPE     40     58     28     79     67     48     43     28
                 vv
clus              CLUS_9
  ZBTB5 MUTATED        0
  ZBTB5 WILD-TYPE     74
D1228V10, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB5 MUTATED        1      0      0      2
  ZBTB5 WILD-TYPE     32     31     27     17
D1228V11, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB5 MUTATED        2      0      1      0
  ZBTB5 WILD-TYPE     52     10     23     22
D1228V12, multiclass
        clus
vv       ZBTB5 MUTATED ZBTB5 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1229) Variable = C16ORF45 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF45 MUTATED        0      0      1      2
  C16ORF45 WILD-TYPE     46     58     63     41
D1229V1, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                0                 46
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF45 MUTATED        1      1      1
  C16ORF45 WILD-TYPE     50     82     76
D1229V2, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF45 MUTATED        3      1      2      0
  C16ORF45 WILD-TYPE    175    182     99     20
D1229V3, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                1                182
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF45 MUTATED        2      0      1
  C16ORF45 WILD-TYPE     85     80     99
D1229V4, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF45 MUTATED        2      1      2
  C16ORF45 WILD-TYPE     87    159    136
D1229V5, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                1                159
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF45 MUTATED        2      1      2
  C16ORF45 WILD-TYPE    180    132     70
D1229V6, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                1                132
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF45 MUTATED        0      2      1      3
  C16ORF45 WILD-TYPE    112     94     91    183
D1229V7, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                1                 91
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C16ORF45 MUTATED        1      2      1      0      0      1      1
  C16ORF45 WILD-TYPE     59     48     48     40     63    124     98
D1229V8, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF45 MUTATED        0      2      1      3
  C16ORF45 WILD-TYPE    130     76     67    193
D1229V9, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                0                130
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C16ORF45 MUTATED        1      1      0      0      1      0      1      0
  C16ORF45 WILD-TYPE     39     61     28     80     68     48     42     28
                    vv
clus                 CLUS_9
  C16ORF45 MUTATED        2
  C16ORF45 WILD-TYPE     72
D1229V10, multiclass
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF45 MUTATED        1      0      1      0
  C16ORF45 WILD-TYPE     32     31     26     19
D1229V11, multiclass
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-6142         TCGA-A6-6649         TCGA-A6-6651 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6309         TCGA-G4-6625 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF45 MUTATED        1      0      1      0
  C16ORF45 WILD-TYPE     53     10     23     22
D1229V12, multiclass
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-6142         TCGA-A6-6649         TCGA-A6-6651 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6309         TCGA-G4-6625 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 

Clustering(1230) Variable = HCLS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCLS1 MUTATED        2      1      0      5
  HCLS1 WILD-TYPE     44     57     64     38
D1230V1, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCLS1 MUTATED        4      1      3
  HCLS1 WILD-TYPE     47     82     74
D1230V2, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCLS1 MUTATED       14      2      0      0
  HCLS1 WILD-TYPE    164    181    101     20
D1230V3, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCLS1 MUTATED        4      1      3
  HCLS1 WILD-TYPE     83     79     97
D1230V4, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCLS1 MUTATED        2      5      5
  HCLS1 WILD-TYPE     87    155    133
D1230V5, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HCLS1 MUTATED        7      4      1
  HCLS1 WILD-TYPE    175    129     71
D1230V6, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCLS1 MUTATED        1      4      3      8
  HCLS1 WILD-TYPE    111     92     89    178
D1230V7, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HCLS1 MUTATED        1      1      5      1      1      1      6
  HCLS1 WILD-TYPE     59     49     44     39     62    124     93
D1230V8, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCLS1 MUTATED        2      3      1      9
  HCLS1 WILD-TYPE    128     75     67    187
D1230V9, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HCLS1 MUTATED        0      4      2      0      7      0      1      0
  HCLS1 WILD-TYPE     40     58     26     80     62     48     42     28
                 vv
clus              CLUS_9
  HCLS1 MUTATED        1
  HCLS1 WILD-TYPE     73
D1230V10, multiclass
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCLS1 MUTATED        1      0      0      1
  HCLS1 WILD-TYPE     32     31     27     18
D1230V11, multiclass
[1] "Remove cluster labels:" "HCLS1 MUTATED"         
clus
  HCLS1 MUTATED HCLS1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCLS1 MUTATED        1      0      0      1
  HCLS1 WILD-TYPE     53     10     24     21
D1230V12, multiclass
[1] "Remove cluster labels:" "HCLS1 MUTATED"         
clus
  HCLS1 MUTATED HCLS1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 

Clustering(1231) Variable = DNAJB9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB9 MUTATED        0      0      0      2
  DNAJB9 WILD-TYPE     46     58     64     41
D1231V1, multiclass
[1] "Remove cluster labels:" "DNAJB9 MUTATED"        
clus
  DNAJB9 MUTATED DNAJB9 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AY-4071 
"DNAJB9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJB9 MUTATED        0      1      1
  DNAJB9 WILD-TYPE     51     82     76
D1231V2, multiclass
[1] "Remove cluster labels:" "DNAJB9 MUTATED"        
clus
  DNAJB9 MUTATED DNAJB9 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AY-4071 
"DNAJB9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB9 MUTATED        6      0      0      0
  DNAJB9 WILD-TYPE    172    183    101     20
D1231V3, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJB9 MUTATED        3      0      1
  DNAJB9 WILD-TYPE     84     80     99
D1231V4, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJB9 MUTATED        0      2      4
  DNAJB9 WILD-TYPE     89    158    134
D1231V5, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJB9 MUTATED        4      2      0
  DNAJB9 WILD-TYPE    178    131     72
D1231V6, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB9 MUTATED        0      1      3      2
  DNAJB9 WILD-TYPE    112     95     89    184
D1231V7, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJB9 MUTATED        1      0      3      0      1      0      1
  DNAJB9 WILD-TYPE     59     50     46     40     62    125     98
D1231V8, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB9 MUTATED        1      3      0      2
  DNAJB9 WILD-TYPE    129     75     68    194
D1231V9, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAJB9 MUTATED        0      3      1      0      2      0      0      0
  DNAJB9 WILD-TYPE     40     59     27     80     67     48     43     28
                  vv
clus               CLUS_9
  DNAJB9 MUTATED        0
  DNAJB9 WILD-TYPE     74
D1231V10, multiclass
        clus
vv       DNAJB9 MUTATED DNAJB9 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB9 MUTATED        1      0      0      1
  DNAJB9 WILD-TYPE     32     31     27     18
D1231V11, multiclass
[1] "Remove cluster labels:" "DNAJB9 MUTATED"        
clus
  DNAJB9 MUTATED DNAJB9 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB9 MUTATED        2      0      0      0
  DNAJB9 WILD-TYPE     52     10     24     22
D1231V12, multiclass
[1] "Remove cluster labels:" "DNAJB9 MUTATED"        
clus
  DNAJB9 MUTATED DNAJB9 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" "DNAJB9 WILD-TYPE" 

Clustering(1232) Variable = ICA1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICA1 MUTATED        2      0      0      0
  ICA1 WILD-TYPE     44     58     64     43
D1232V1, multiclass
[1] "Remove cluster labels:" "ICA1 MUTATED"          
clus
  ICA1 MUTATED ICA1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AY-4071 
"ICA1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ICA1 MUTATED        2      0      0
  ICA1 WILD-TYPE     49     83     77
D1232V2, multiclass
[1] "Remove cluster labels:" "ICA1 MUTATED"          
clus
  ICA1 MUTATED ICA1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AY-4071 
"ICA1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICA1 MUTATED        4      2      1      0
  ICA1 WILD-TYPE    174    181    100     20
D1232V3, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ICA1 MUTATED        1      2      2
  ICA1 WILD-TYPE     86     78     98
D1232V4, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ICA1 MUTATED        0      2      3
  ICA1 WILD-TYPE     89    158    135
D1232V5, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ICA1 MUTATED        3      2      0
  ICA1 WILD-TYPE    179    131     72
D1232V6, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICA1 MUTATED        2      0      3      2
  ICA1 WILD-TYPE    110     96     89    184
D1232V7, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             96
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ICA1 MUTATED        1      2      1      0      1      0      2
  ICA1 WILD-TYPE     59     48     48     40     62    125     97
D1232V8, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICA1 MUTATED        3      2      0      2
  ICA1 WILD-TYPE    127     76     68    194
D1232V9, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ICA1 MUTATED        1      2      0      2      1      0      0      1      0
  ICA1 WILD-TYPE     39     60     28     78     68     48     43     27     74
D1232V10, multiclass
        clus
vv       ICA1 MUTATED ICA1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICA1 MUTATED        1      0      0      0
  ICA1 WILD-TYPE     32     31     27     19
D1232V11, multiclass
[1] "Remove cluster labels:" "ICA1 MUTATED"          
clus
  ICA1 MUTATED ICA1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-G5-6641 
"ICA1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICA1 MUTATED        1      0      0      0
  ICA1 WILD-TYPE     53     10     24     22
D1232V12, multiclass
[1] "Remove cluster labels:" "ICA1 MUTATED"          
clus
  ICA1 MUTATED ICA1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" "ICA1 WILD-TYPE" 
    TCGA-G5-6641 
"ICA1 WILD-TYPE" 

Clustering(1233) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        0      2      0      1
  SMARCB1 WILD-TYPE     46     56     64     42
D1233V1, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               2                56
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        0      3      0
  SMARCB1 WILD-TYPE     51     80     77
D1233V2, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               3                80
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED       13      7      3      1
  SMARCB1 WILD-TYPE    165    176     98     19
D1233V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               7               176
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        6      6      9
  SMARCB1 WILD-TYPE     81     74     91
D1233V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               6                74
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        2      9      9
  SMARCB1 WILD-TYPE     87    151    129
D1233V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               9               151
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        8      9      3
  SMARCB1 WILD-TYPE    174    124     69
D1233V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               9               124
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED       10      9      3      2
  SMARCB1 WILD-TYPE    102     87     89    184
D1233V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1              10               102
  CLUS_2               9                87
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCB1 MUTATED        5      6      5      2      2      2      2
  SMARCB1 WILD-TYPE     55     44     44     38     61    123     97
D1233V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               6                44
  CLUS_3               5                44
  CLUS_4               2                38
  CLUS_5               2                61
  CLUS_6               2               123
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED       12      3      3      5
  SMARCB1 WILD-TYPE    118     75     65    191
D1233V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1              12               118
  CLUS_2               3                75
  CLUS_3               3                65
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMARCB1 MUTATED        5      3      3      2      4      2      3      0
  SMARCB1 WILD-TYPE     35     59     25     78     65     46     40     28
                   vv
clus                CLUS_9
  SMARCB1 MUTATED        1
  SMARCB1 WILD-TYPE     73
D1233V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               5                35
  CLUS_2               3                59
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               4                65
  CLUS_6               2                46
  CLUS_7               3                40
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        2      1      0      0
  SMARCB1 WILD-TYPE     31     30     27     19
D1233V11, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      1      0      1
  SMARCB1 WILD-TYPE     53      9     24     21
D1233V12, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1234) Variable = MTOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        5      1      3      7
  MTOR WILD-TYPE     41     57     61     36
D1234V1, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            3             61
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        7      3      6
  MTOR WILD-TYPE     44     80     71
D1234V2, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            7             44
  CLUS_2            3             80
  CLUS_3            6             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED       25      8      4      0
  MTOR WILD-TYPE    153    175     97     20
D1234V3, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1           25            153
  CLUS_2            8            175
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        7      3     12
  MTOR WILD-TYPE     80     77     88
D1234V4, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            7             80
  CLUS_2            3             77
  CLUS_3           12             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED        5     13      8
  MTOR WILD-TYPE     84    147    130
D1234V5, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            5             84
  CLUS_2           13            147
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTOR MUTATED       11     10      5
  MTOR WILD-TYPE    171    123     67
D1234V6, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1           11            171
  CLUS_2           10            123
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        5     12      5     16
  MTOR WILD-TYPE    107     84     87    170
D1234V7, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            5            107
  CLUS_2           12             84
  CLUS_3            5             87
  CLUS_4           16            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTOR MUTATED        6      5     10      0      1      5     11
  MTOR WILD-TYPE     54     45     39     40     62    120     88
D1234V8, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            6             54
  CLUS_2            5             45
  CLUS_3           10             39
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            5            120
  CLUS_7           11             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED       13      6      2     16
  MTOR WILD-TYPE    117     72     66    180
D1234V9, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1           13            117
  CLUS_2            6             72
  CLUS_3            2             66
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTOR MUTATED        3      4      3      5     11      3      4      3      1
  MTOR WILD-TYPE     37     58     25     75     58     45     39     25     73
D1234V10, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            5             75
  CLUS_5           11             58
  CLUS_6            3             45
  CLUS_7            4             39
  CLUS_8            3             25
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        3      0      0      4
  MTOR WILD-TYPE     30     31     27     15
D1234V11, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTOR MUTATED        4      0      2      1
  MTOR WILD-TYPE     50     10     22     21
D1234V12, multiclass
        clus
vv       MTOR MUTATED MTOR WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1235) Variable = RNF219 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF219 MUTATED        0      1      1      3
  RNF219 WILD-TYPE     46     57     63     40
D1235V1, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF219 MUTATED        1      1      3
  RNF219 WILD-TYPE     50     82     74
D1235V2, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF219 MUTATED       12      4      2      1
  RNF219 WILD-TYPE    166    179     99     19
D1235V3, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF219 MUTATED        7      2      5
  RNF219 WILD-TYPE     80     78     95
D1235V4, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF219 MUTATED        3      6      7
  RNF219 WILD-TYPE     86    154    131
D1235V5, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              154
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF219 MUTATED       10      3      3
  RNF219 WILD-TYPE    172    130     69
D1235V6, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              3              130
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF219 MUTATED        2      7      6      4
  RNF219 WILD-TYPE    110     89     86    182
D1235V7, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              6               86
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF219 MUTATED        3      2      7      1      2      1      3
  RNF219 WILD-TYPE     57     48     42     39     61    124     96
D1235V8, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF219 MUTATED        9      4      2      3
  RNF219 WILD-TYPE    121     74     66    193
D1235V9, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF219 MUTATED        3      5      1      3      4      0      0      0
  RNF219 WILD-TYPE     37     57     27     77     65     48     43     28
                  vv
clus               CLUS_9
  RNF219 MUTATED        2
  RNF219 WILD-TYPE     72
D1235V10, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF219 MUTATED        1      0      1      3
  RNF219 WILD-TYPE     32     31     26     16
D1235V11, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF219 MUTATED        2      0      3      0
  RNF219 WILD-TYPE     52     10     21     22
D1235V12, multiclass
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1236) Variable = KIAA0528 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0528 MUTATED        2      0      1      2
  KIAA0528 WILD-TYPE     44     58     63     41
D1236V1, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0528 MUTATED        2      1      2
  KIAA0528 WILD-TYPE     49     82     75
D1236V2, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0528 MUTATED       14      1      1      0
  KIAA0528 WILD-TYPE    164    182    100     20
D1236V3, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0528 MUTATED        5      3      3
  KIAA0528 WILD-TYPE     82     77     97
D1236V4, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                3                 77
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0528 MUTATED        1      7      4
  KIAA0528 WILD-TYPE     88    153    134
D1236V5, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                7                153
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0528 MUTATED        5      7      0
  KIAA0528 WILD-TYPE    177    126     72
D1236V6, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                7                126
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0528 MUTATED        3      3      5      6
  KIAA0528 WILD-TYPE    109     93     87    180
D1236V7, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                3                 93
  CLUS_3                5                 87
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0528 MUTATED        4      1      6      0      1      1      4
  KIAA0528 WILD-TYPE     56     49     43     40     62    124     95
D1236V8, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                4                 56
  CLUS_2                1                 49
  CLUS_3                6                 43
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0528 MUTATED        4      3      1      9
  KIAA0528 WILD-TYPE    126     75     67    187
D1236V9, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4                9                187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0528 MUTATED        1      3      1      2      5      1      1      1
  KIAA0528 WILD-TYPE     39     59     27     78     64     47     42     27
                    vv
clus                 CLUS_9
  KIAA0528 MUTATED        2
  KIAA0528 WILD-TYPE     72
D1236V10, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                5                 64
  CLUS_6                1                 47
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0528 MUTATED        1      0      1      1
  KIAA0528 WILD-TYPE     32     31     26     18
D1236V11, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                1                 26
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0528 MUTATED        2      0      1      0
  KIAA0528 WILD-TYPE     52     10     23     22
D1236V12, multiclass
        clus
vv       KIAA0528 MUTATED KIAA0528 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1237) Variable = GABPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABPA MUTATED        2      0      0      2
  GABPA WILD-TYPE     44     58     64     41
D1237V1, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABPA MUTATED        3      1      0
  GABPA WILD-TYPE     48     82     77
D1237V2, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABPA MUTATED       10      2      0      0
  GABPA WILD-TYPE    168    181    101     20
D1237V3, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABPA MUTATED        1      2      5
  GABPA WILD-TYPE     86     78     95
D1237V4, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABPA MUTATED        0      3      6
  GABPA WILD-TYPE     89    157    132
D1237V5, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABPA MUTATED        5      3      1
  GABPA WILD-TYPE    177    130     71
D1237V6, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABPA MUTATED        2      3      3      4
  GABPA WILD-TYPE    110     93     89    182
D1237V7, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABPA MUTATED        2      1      4      0      1      0      4
  GABPA WILD-TYPE     58     49     45     40     62    125     95
D1237V8, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABPA MUTATED        6      1      0      4
  GABPA WILD-TYPE    124     77     68    192
D1237V9, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GABPA MUTATED        0      1      2      2      3      2      0      1
  GABPA WILD-TYPE     40     61     26     78     66     46     43     27
                 vv
clus              CLUS_9
  GABPA MUTATED        0
  GABPA WILD-TYPE     74
D1237V10, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABPA MUTATED        1      1      1      2
  GABPA WILD-TYPE     32     30     26     17
D1237V11, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABPA MUTATED        1      0      2      2
  GABPA WILD-TYPE     53     10     22     20
D1237V12, multiclass
        clus
vv       GABPA MUTATED GABPA WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1238) Variable = PPP2R2B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R2B MUTATED        1      1      0      1
  PPP2R2B WILD-TYPE     45     57     64     42
D1238V1, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R2B MUTATED        1      1      1
  PPP2R2B WILD-TYPE     50     82     76
D1238V2, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R2B MUTATED        7      4      0      0
  PPP2R2B WILD-TYPE    171    179    101     20
D1238V3, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               7               171
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R2B MUTATED        3      1      4
  PPP2R2B WILD-TYPE     84     79     96
D1238V4, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R2B MUTATED        2      3      2
  PPP2R2B WILD-TYPE     87    157    136
D1238V5, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               3               157
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R2B MUTATED        3      3      1
  PPP2R2B WILD-TYPE    179    130     71
D1238V6, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R2B MUTATED        3      3      3      2
  PPP2R2B WILD-TYPE    109     93     89    184
D1238V7, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP2R2B MUTATED        0      1      5      0      2      1      2
  PPP2R2B WILD-TYPE     60     49     44     40     61    124     97
D1238V8, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R2B MUTATED        2      3      1      5
  PPP2R2B WILD-TYPE    128     75     67    191
D1238V9, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               2               128
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPP2R2B MUTATED        0      2      2      2      2      1      1      1
  PPP2R2B WILD-TYPE     40     60     26     78     67     47     42     27
                   vv
clus                CLUS_9
  PPP2R2B MUTATED        0
  PPP2R2B WILD-TYPE     74
D1238V10, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R2B MUTATED        1      0      1      2
  PPP2R2B WILD-TYPE     32     31     26     17
D1238V11, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R2B MUTATED        1      1      2      0
  PPP2R2B WILD-TYPE     53      9     22     22
D1238V12, multiclass
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1239) Variable = NEK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK1 MUTATED        3      1      0      2
  NEK1 WILD-TYPE     43     57     64     41
D1239V1, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK1 MUTATED        2      3      1
  NEK1 WILD-TYPE     49     80     76
D1239V2, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK1 MUTATED       11      2      0      1
  NEK1 WILD-TYPE    167    181    101     19
D1239V3, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK1 MUTATED        3      0      5
  NEK1 WILD-TYPE     84     80     95
D1239V4, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK1 MUTATED        0      4      7
  NEK1 WILD-TYPE     89    156    131
D1239V5, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK1 MUTATED        7      4      0
  NEK1 WILD-TYPE    175    129     72
D1239V6, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK1 MUTATED        1      4      3      6
  NEK1 WILD-TYPE    111     92     89    180
D1239V7, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEK1 MUTATED        0      1      4      2      1      2      4
  NEK1 WILD-TYPE     60     49     45     38     62    123     95
D1239V8, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK1 MUTATED        5      1      1      7
  NEK1 WILD-TYPE    125     77     67    189
D1239V9, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NEK1 MUTATED        2      3      2      3      4      0      0      0      0
  NEK1 WILD-TYPE     38     59     26     77     65     48     43     28     74
D1239V10, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK1 MUTATED        0      0      1      2
  NEK1 WILD-TYPE     33     31     26     17
D1239V11, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK1 MUTATED        1      0      2      0
  NEK1 WILD-TYPE     53     10     22     22
D1239V12, multiclass
        clus
vv       NEK1 MUTATED NEK1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1240) Variable = CEACAM6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM6 MUTATED        0      0      0      0
  CEACAM6 WILD-TYPE     46     58     64     43
D1240V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM6 MUTATED        0      0      0
  CEACAM6 WILD-TYPE     51     83     77
D1240V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM6 MUTATED        2      0      1      1
  CEACAM6 WILD-TYPE    176    183    100     19
D1240V3, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM6 MUTATED        1      0      3
  CEACAM6 WILD-TYPE     86     80     97
D1240V4, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM6 MUTATED        1      1      1
  CEACAM6 WILD-TYPE     88    159    137
D1240V5, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM6 MUTATED        3      0      0
  CEACAM6 WILD-TYPE    179    133     72
D1240V6, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               0               133
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM6 MUTATED        1      2      1      0
  CEACAM6 WILD-TYPE    111     94     91    186
D1240V7, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEACAM6 MUTATED        1      1      1      1      0      0      0
  CEACAM6 WILD-TYPE     59     49     48     39     63    125     99
D1240V8, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM6 MUTATED        4      0      0      0
  CEACAM6 WILD-TYPE    126     78     68    196
D1240V9, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEACAM6 MUTATED        0      0      1      1      1      0      1      0
  CEACAM6 WILD-TYPE     40     62     27     79     68     48     42     28
                   vv
clus                CLUS_9
  CEACAM6 MUTATED        0
  CEACAM6 WILD-TYPE     74
D1240V10, multiclass
        clus
vv       CEACAM6 MUTATED CEACAM6 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM6 MUTATED        0      1      0      1
  CEACAM6 WILD-TYPE     33     30     27     18
D1240V11, multiclass
[1] "Remove cluster labels:" "CEACAM6 MUTATED"       
clus
  CEACAM6 MUTATED CEACAM6 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6601 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM6 MUTATED        2      0      0      0
  CEACAM6 WILD-TYPE     52     10     24     22
D1240V12, multiclass
[1] "Remove cluster labels:" "CEACAM6 MUTATED"       
clus
  CEACAM6 MUTATED CEACAM6 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6601 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" "CEACAM6 WILD-TYPE" 

Clustering(1241) Variable = MED14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED14 MUTATED        5      1      0      1
  MED14 WILD-TYPE     41     57     64     42
D1241V1, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED14 MUTATED        6      0      1
  MED14 WILD-TYPE     45     83     76
D1241V2, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED14 MUTATED       14      0      3      2
  MED14 WILD-TYPE    164    183     98     18
D1241V3, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             0             183
  CLUS_3             3              98
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED14 MUTATED        5      2      5
  MED14 WILD-TYPE     82     78     95
D1241V4, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED14 MUTATED        4      1     11
  MED14 WILD-TYPE     85    159    127
D1241V5, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             1             159
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED14 MUTATED       11      3      2
  MED14 WILD-TYPE    171    130     70
D1241V6, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED14 MUTATED        4      4      5      6
  MED14 WILD-TYPE    108     92     87    180
D1241V7, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED14 MUTATED        2      1      4      1      4      1      6
  MED14 WILD-TYPE     58     49     45     39     59    124     93
D1241V8, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED14 MUTATED        7      4      1      7
  MED14 WILD-TYPE    123     74     67    189
D1241V9, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MED14 MUTATED        1      5      1      2      7      0      2      1
  MED14 WILD-TYPE     39     57     27     78     62     48     41     27
                 vv
clus              CLUS_9
  MED14 MUTATED        0
  MED14 WILD-TYPE     74
D1241V10, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED14 MUTATED        2      3      0      3
  MED14 WILD-TYPE     31     28     27     16
D1241V11, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED14 MUTATED        6      1      1      0
  MED14 WILD-TYPE     48      9     23     22
D1241V12, multiclass
        clus
vv       MED14 MUTATED MED14 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1242) Variable = AGTR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTR2 MUTATED        1      1      1      3
  AGTR2 WILD-TYPE     45     57     63     40
D1242V1, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGTR2 MUTATED        3      1      2
  AGTR2 WILD-TYPE     48     82     75
D1242V2, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTR2 MUTATED       11      4      1      1
  AGTR2 WILD-TYPE    167    179    100     19
D1242V3, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGTR2 MUTATED        4      1      7
  AGTR2 WILD-TYPE     83     79     93
D1242V4, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGTR2 MUTATED        1      6      5
  AGTR2 WILD-TYPE     88    154    133
D1242V5, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGTR2 MUTATED        5      6      1
  AGTR2 WILD-TYPE    177    127     71
D1242V6, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTR2 MUTATED        2      5      4      6
  AGTR2 WILD-TYPE    110     91     88    180
D1242V7, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGTR2 MUTATED        2      1      4      2      2      2      4
  AGTR2 WILD-TYPE     58     49     45     38     61    123     95
D1242V8, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTR2 MUTATED        6      4      1      4
  AGTR2 WILD-TYPE    124     74     67    192
D1242V9, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGTR2 MUTATED        1      4      1      4      3      1      1      0
  AGTR2 WILD-TYPE     39     58     27     76     66     47     42     28
                 vv
clus              CLUS_9
  AGTR2 MUTATED        0
  AGTR2 WILD-TYPE     74
D1242V10, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTR2 MUTATED        1      0      0      2
  AGTR2 WILD-TYPE     32     31     27     17
D1242V11, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGTR2 MUTATED        2      0      1      0
  AGTR2 WILD-TYPE     52     10     23     22
D1242V12, multiclass
        clus
vv       AGTR2 MUTATED AGTR2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1243) Variable = COL4A6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A6 MUTATED        2      3      1      4
  COL4A6 WILD-TYPE     44     55     63     39
D1243V1, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              3               55
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL4A6 MUTATED        3      6      1
  COL4A6 WILD-TYPE     48     77     76
D1243V2, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              6               77
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A6 MUTATED       13      7      2      0
  COL4A6 WILD-TYPE    165    176     99     20
D1243V3, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              7              176
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL4A6 MUTATED        6      2      4
  COL4A6 WILD-TYPE     81     78     96
D1243V4, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL4A6 MUTATED        2      4     11
  COL4A6 WILD-TYPE     87    156    127
D1243V5, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL4A6 MUTATED       11      6      0
  COL4A6 WILD-TYPE    171    127     72
D1243V6, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A6 MUTATED        2      2      8     10
  COL4A6 WILD-TYPE    110     94     84    176
D1243V7, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              8               84
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL4A6 MUTATED        1      2      4      0      5      5      5
  COL4A6 WILD-TYPE     59     48     45     40     58    120     94
D1243V8, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              5               58
  CLUS_6              5              120
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A6 MUTATED        8      4      0      5
  COL4A6 WILD-TYPE    122     74     68    191
D1243V9, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COL4A6 MUTATED        1      4      2      5      2      1      0      1
  COL4A6 WILD-TYPE     39     58     26     75     67     47     43     27
                  vv
clus               CLUS_9
  COL4A6 MUTATED        1
  COL4A6 WILD-TYPE     73
D1243V10, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              5               75
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A6 MUTATED        1      2      0      1
  COL4A6 WILD-TYPE     32     29     27     18
D1243V11, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL4A6 MUTATED        3      0      1      0
  COL4A6 WILD-TYPE     51     10     23     22
D1243V12, multiclass
        clus
vv       COL4A6 MUTATED COL4A6 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1244) Variable = KRTAP12-3 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP12-3 MUTATED        0      0      0      0
  KRTAP12-3 WILD-TYPE     46     58     64     43
D1244V1, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP12-3 MUTATED        0      0      0
  KRTAP12-3 WILD-TYPE     51     83     77
D1244V2, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP12-3 MUTATED        3      0      0      0
  KRTAP12-3 WILD-TYPE    175    183    101     20
D1244V3, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 3                 175
  CLUS_2                 0                 183
  CLUS_3                 0                 101
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP12-3 MUTATED        0      0      3
  KRTAP12-3 WILD-TYPE     87     80     97
D1244V4, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 0                  87
  CLUS_2                 0                  80
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP12-3 MUTATED        0      2      1
  KRTAP12-3 WILD-TYPE     89    158    137
D1244V5, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 2                 158
  CLUS_3                 1                 137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP12-3 MUTATED        1      2      0
  KRTAP12-3 WILD-TYPE    181    131     72
D1244V6, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 1                 181
  CLUS_2                 2                 131
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP12-3 MUTATED        0      3      0      0
  KRTAP12-3 WILD-TYPE    112     93     92    186
D1244V7, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 0                 112
  CLUS_2                 3                  93
  CLUS_3                 0                  92
  CLUS_4                 0                 186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP12-3 MUTATED        0      1      1      1      0      0      0
  KRTAP12-3 WILD-TYPE     60     49     48     39     63    125     99
D1244V8, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 1                  49
  CLUS_3                 1                  48
  CLUS_4                 1                  39
  CLUS_5                 0                  63
  CLUS_6                 0                 125
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP12-3 MUTATED        2      0      0      1
  KRTAP12-3 WILD-TYPE    128     78     68    195
D1244V9, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 2                 128
  CLUS_2                 0                  78
  CLUS_3                 0                  68
  CLUS_4                 1                 195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRTAP12-3 MUTATED        0      0      0      1      1      0      1      0
  KRTAP12-3 WILD-TYPE     40     62     28     79     68     48     42     28
                     vv
clus                  CLUS_9
  KRTAP12-3 MUTATED        0
  KRTAP12-3 WILD-TYPE     74
D1244V10, multiclass
        clus
vv       KRTAP12-3 MUTATED KRTAP12-3 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 0                  62
  CLUS_3                 0                  28
  CLUS_4                 1                  79
  CLUS_5                 1                  68
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP12-3 MUTATED        0      0      0      0
  KRTAP12-3 WILD-TYPE     33     31     27     19
D1244V11, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP12-3 MUTATED        0      0      0      0
  KRTAP12-3 WILD-TYPE     54     10     24     22
D1244V12, multiclass

Clustering(1245) Variable = EMR3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR3 MUTATED        2      0      0      4
  EMR3 WILD-TYPE     44     58     64     39
D1245V1, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMR3 MUTATED        4      1      1
  EMR3 WILD-TYPE     47     82     76
D1245V2, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR3 MUTATED       11      3      2      1
  EMR3 WILD-TYPE    167    180     99     19
D1245V3, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMR3 MUTATED        4      2      5
  EMR3 WILD-TYPE     83     78     95
D1245V4, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMR3 MUTATED        3      7      4
  EMR3 WILD-TYPE     86    153    134
D1245V5, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMR3 MUTATED        7      5      2
  EMR3 WILD-TYPE    175    128     70
D1245V6, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR3 MUTATED        1      7      3      6
  EMR3 WILD-TYPE    111     89     89    180
D1245V7, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            7             89
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMR3 MUTATED        2      3      5      0      0      1      6
  EMR3 WILD-TYPE     58     47     44     40     63    124     93
D1245V8, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR3 MUTATED        6      2      0      8
  EMR3 WILD-TYPE    124     76     68    188
D1245V9, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EMR3 MUTATED        4      1      3      0      5      0      0      2      1
  EMR3 WILD-TYPE     36     61     25     80     64     48     43     26     73
D1245V10, multiclass
        clus
vv       EMR3 MUTATED EMR3 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            1             61
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR3 MUTATED        1      0      0      0
  EMR3 WILD-TYPE     32     31     27     19
D1245V11, multiclass
[1] "Remove cluster labels:" "EMR3 MUTATED"          
clus
  EMR3 MUTATED EMR3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AZ-4323     TCGA-AZ-4616 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-G5-6641 
"EMR3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR3 MUTATED        1      0      0      0
  EMR3 WILD-TYPE     53     10     24     22
D1245V12, multiclass
[1] "Remove cluster labels:" "EMR3 MUTATED"          
clus
  EMR3 MUTATED EMR3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AZ-4323     TCGA-AZ-4616 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" "EMR3 WILD-TYPE" 
    TCGA-G5-6641 
"EMR3 WILD-TYPE" 

Clustering(1246) Variable = STAU2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        2      0      0      1
  STAU2 WILD-TYPE     44     58     64     42
D1246V1, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        2      1      0
  STAU2 WILD-TYPE     49     82     77
D1246V2, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        9      1      0      0
  STAU2 WILD-TYPE    169    182    101     20
D1246V3, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        3      0      4
  STAU2 WILD-TYPE     84     80     96
D1246V4, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        0      1      6
  STAU2 WILD-TYPE     89    159    132
D1246V5, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        5      1      1
  STAU2 WILD-TYPE    177    132     71
D1246V6, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        1      3      3      3
  STAU2 WILD-TYPE    111     93     89    183
D1246V7, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAU2 MUTATED        0      1      4      0      2      1      2
  STAU2 WILD-TYPE     60     49     45     40     61    124     97
D1246V8, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        4      2      0      3
  STAU2 WILD-TYPE    126     76     68    193
D1246V9, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STAU2 MUTATED        0      3      0      1      2      1      1      0
  STAU2 WILD-TYPE     40     59     28     79     67     47     42     28
                 vv
clus              CLUS_9
  STAU2 MUTATED        1
  STAU2 WILD-TYPE     73
D1246V10, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        0      1      0      2
  STAU2 WILD-TYPE     33     30     27     17
D1246V11, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        2      0      0      1
  STAU2 WILD-TYPE     52     10     24     21
D1246V12, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1247) Variable = GGA2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGA2 MUTATED        5      0      1      2
  GGA2 WILD-TYPE     41     58     63     41
D1247V1, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGA2 MUTATED        5      3      0
  GGA2 WILD-TYPE     46     80     77
D1247V2, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            3             80
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGA2 MUTATED       11      1      0      1
  GGA2 WILD-TYPE    167    182    101     19
D1247V3, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGA2 MUTATED        3      0      2
  GGA2 WILD-TYPE     84     80     98
D1247V4, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGA2 MUTATED        1      4      5
  GGA2 WILD-TYPE     88    156    133
D1247V5, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GGA2 MUTATED        3      4      3
  GGA2 WILD-TYPE    179    129     69
D1247V6, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGA2 MUTATED        1      3      1      8
  GGA2 WILD-TYPE    111     93     91    178
D1247V7, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GGA2 MUTATED        0      1      3      0      0      2      7
  GGA2 WILD-TYPE     60     49     46     40     63    123     92
D1247V8, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGA2 MUTATED        2      0      0     10
  GGA2 WILD-TYPE    128     78     68    186
D1247V9, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GGA2 MUTATED        1      0      1      1      5      0      0      1      3
  GGA2 WILD-TYPE     39     62     27     79     64     48     43     27     71
D1247V10, multiclass
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGA2 MUTATED        0      0      0      1
  GGA2 WILD-TYPE     33     31     27     18
D1247V11, multiclass
[1] "Remove cluster labels:" "GGA2 MUTATED"          
clus
  GGA2 MUTATED GGA2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-G5-6641 
"GGA2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGA2 MUTATED        0      0      1      0
  GGA2 WILD-TYPE     54     10     23     22
D1247V12, multiclass
[1] "Remove cluster labels:" "GGA2 MUTATED"          
clus
  GGA2 MUTATED GGA2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-G5-6641 
"GGA2 WILD-TYPE" 

Clustering(1248) Variable = ATRNL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRNL1 MUTATED        3      2      0      3
  ATRNL1 WILD-TYPE     43     56     64     40
D1248V1, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATRNL1 MUTATED        4      2      2
  ATRNL1 WILD-TYPE     47     81     75
D1248V2, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRNL1 MUTATED       20      4      2      1
  ATRNL1 WILD-TYPE    158    179     99     19
D1248V3, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1             20              158
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATRNL1 MUTATED        7      4      8
  ATRNL1 WILD-TYPE     80     76     92
D1248V4, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              4               76
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATRNL1 MUTATED        2      6     13
  ATRNL1 WILD-TYPE     87    154    125
D1248V5, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATRNL1 MUTATED       13      8      0
  ATRNL1 WILD-TYPE    169    125     72
D1248V6, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              8              125
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRNL1 MUTATED        6      8      5      8
  ATRNL1 WILD-TYPE    106     88     87    178
D1248V7, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              6              106
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATRNL1 MUTATED        4      3      9      1      2      3      5
  ATRNL1 WILD-TYPE     56     47     40     39     61    122     94
D1248V8, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              3               47
  CLUS_3              9               40
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRNL1 MUTATED       12      2      4      8
  ATRNL1 WILD-TYPE    118     76     64    188
D1248V9, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1             12              118
  CLUS_2              2               76
  CLUS_3              4               64
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATRNL1 MUTATED        4      2      0      3      9      3      2      1
  ATRNL1 WILD-TYPE     36     60     28     77     60     45     41     27
                  vv
clus               CLUS_9
  ATRNL1 MUTATED        2
  ATRNL1 WILD-TYPE     72
D1248V10, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              3               45
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRNL1 MUTATED        3      0      1      2
  ATRNL1 WILD-TYPE     30     31     26     17
D1248V11, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRNL1 MUTATED        3      0      2      1
  ATRNL1 WILD-TYPE     51     10     22     21
D1248V12, multiclass
        clus
vv       ATRNL1 MUTATED ATRNL1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1249) Variable = OSR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSR1 MUTATED        0      0      0      0
  OSR1 WILD-TYPE     46     58     64     43
D1249V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSR1 MUTATED        0      0      0
  OSR1 WILD-TYPE     51     83     77
D1249V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSR1 MUTATED        2      1      1      0
  OSR1 WILD-TYPE    176    182    100     20
D1249V3, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSR1 MUTATED        1      1      2
  OSR1 WILD-TYPE     86     79     98
D1249V4, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSR1 MUTATED        0      1      2
  OSR1 WILD-TYPE     89    159    136
D1249V5, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OSR1 MUTATED        2      1      0
  OSR1 WILD-TYPE    180    132     72
D1249V6, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSR1 MUTATED        1      3      0      0
  OSR1 WILD-TYPE    111     93     92    186
D1249V7, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSR1 MUTATED        0      3      0      1      0      0      0
  OSR1 WILD-TYPE     60     47     49     39     63    125     99
D1249V8, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSR1 MUTATED        3      0      1      0
  OSR1 WILD-TYPE    127     78     67    196
D1249V9, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  OSR1 MUTATED        2      0      1      0      0      0      1      0      0
  OSR1 WILD-TYPE     38     62     27     80     69     48     42     28     74
D1249V10, multiclass
        clus
vv       OSR1 MUTATED OSR1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSR1 MUTATED        0      0      0      0
  OSR1 WILD-TYPE     33     31     27     19
D1249V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSR1 MUTATED        0      0      0      0
  OSR1 WILD-TYPE     54     10     24     22
D1249V12, multiclass

Clustering(1250) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        5      2      1      3
  IRS4 WILD-TYPE     41     56     63     40
D1250V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            2             56
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        7      2      2
  IRS4 WILD-TYPE     44     81     75
D1250V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            7             44
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED       20      6      4      1
  IRS4 WILD-TYPE    158    177     97     19
D1250V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           20            158
  CLUS_2            6            177
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        5      3     11
  IRS4 WILD-TYPE     82     77     89
D1250V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            3             77
  CLUS_3           11             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        3     14     11
  IRS4 WILD-TYPE     86    146    127
D1250V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           14            146
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED       10     13      5
  IRS4 WILD-TYPE    172    120     67
D1250V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           10            172
  CLUS_2           13            120
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        4     10      4     13
  IRS4 WILD-TYPE    108     86     88    173
D1250V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4            108
  CLUS_2           10             86
  CLUS_3            4             88
  CLUS_4           13            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRS4 MUTATED        2      2      9      2      4      1     11
  IRS4 WILD-TYPE     58     48     40     38     59    124     88
D1250V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            9             40
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            1            124
  CLUS_7           11             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED       12      3      1     12
  IRS4 WILD-TYPE    118     75     67    184
D1250V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           12            118
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IRS4 MUTATED        4      4      0      3     12      1      0      0      4
  IRS4 WILD-TYPE     36     58     28     77     57     47     43     28     70
D1250V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5           12             57
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        0      1      2      3
  IRS4 WILD-TYPE     33     30     25     16
D1250V11, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        2      1      3      0
  IRS4 WILD-TYPE     52      9     21     22
D1250V12, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            3             21
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1251) Variable = CEL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        0      0      1      0
  CEL WILD-TYPE     46     58     63     43
D1251V1, multiclass
[1] "Remove cluster labels:" "CEL MUTATED"           
clus
  CEL MUTATED CEL WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3982 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        0      0      1
  CEL WILD-TYPE     51     83     76
D1251V2, multiclass
[1] "Remove cluster labels:" "CEL MUTATED"           
clus
  CEL MUTATED CEL WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3982 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        8      0      0      0
  CEL WILD-TYPE    170    183    101     20
D1251V3, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           8           170
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        2      0      6
  CEL WILD-TYPE     85     80     94
D1251V4, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2            85
  CLUS_2           0            80
  CLUS_3           6            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        2      2      4
  CEL WILD-TYPE     87    158    134
D1251V5, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2            87
  CLUS_2           2           158
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        4      2      2
  CEL WILD-TYPE    178    131     70
D1251V6, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           4           178
  CLUS_2           2           131
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        0      5      3      1
  CEL WILD-TYPE    112     91     89    185
D1251V7, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           0           112
  CLUS_2           5            91
  CLUS_3           3            89
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEL MUTATED        0      0      7      1      0      0      1
  CEL WILD-TYPE     60     50     42     39     63    125     98
D1251V8, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           0            60
  CLUS_2           0            50
  CLUS_3           7            42
  CLUS_4           1            39
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        6      1      0      2
  CEL WILD-TYPE    124     77     68    194
D1251V9, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           6           124
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CEL MUTATED        1      1      0      0      5      0      1      0      1
  CEL WILD-TYPE     39     61     28     80     64     48     42     28     73
D1251V10, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           5            64
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        1      0      0      4
  CEL WILD-TYPE     32     31     27     15
D1251V11, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            32
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           4            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        3      0      2      0
  CEL WILD-TYPE     51     10     22     22
D1251V12, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1252) Variable = ZHX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX2 MUTATED        5      1      2      1
  ZHX2 WILD-TYPE     41     57     62     42
D1252V1, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX2 MUTATED        4      3      2
  ZHX2 WILD-TYPE     47     80     75
D1252V2, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX2 MUTATED       16      3      1      0
  ZHX2 WILD-TYPE    162    180    100     20
D1252V3, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX2 MUTATED        5      0      5
  ZHX2 WILD-TYPE     82     80     95
D1252V4, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX2 MUTATED        2      5      8
  ZHX2 WILD-TYPE     87    155    130
D1252V5, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX2 MUTATED        8      4      3
  ZHX2 WILD-TYPE    174    129     69
D1252V6, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX2 MUTATED        0      4      5     11
  ZHX2 WILD-TYPE    112     92     87    175
D1252V7, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZHX2 MUTATED        0      1      7      0      1      3      8
  ZHX2 WILD-TYPE     60     49     42     40     62    122     91
D1252V8, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            3            122
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX2 MUTATED        5      1      0     12
  ZHX2 WILD-TYPE    125     77     68    184
D1252V9, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZHX2 MUTATED        0      3      1      0      9      1      0      0      4
  ZHX2 WILD-TYPE     40     59     27     80     60     47     43     28     70
D1252V10, multiclass
        clus
vv       ZHX2 MUTATED ZHX2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            9             60
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX2 MUTATED        0      0      0      1
  ZHX2 WILD-TYPE     33     31     27     18
D1252V11, multiclass
[1] "Remove cluster labels:" "ZHX2 MUTATED"          
clus
  ZHX2 MUTATED ZHX2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-G5-6641 
"ZHX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX2 MUTATED        0      0      1      0
  ZHX2 WILD-TYPE     54     10     23     22
D1252V12, multiclass
[1] "Remove cluster labels:" "ZHX2 MUTATED"          
clus
  ZHX2 MUTATED ZHX2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" "ZHX2 WILD-TYPE" 
    TCGA-G5-6641 
"ZHX2 WILD-TYPE" 

Clustering(1253) Variable = HEATR3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR3 MUTATED        0      0      1      2
  HEATR3 WILD-TYPE     46     58     63     41
D1253V1, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR3 MUTATED        1      1      1
  HEATR3 WILD-TYPE     50     82     76
D1253V2, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR3 MUTATED        7      2      1      0
  HEATR3 WILD-TYPE    171    181    100     20
D1253V3, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR3 MUTATED        3      0      4
  HEATR3 WILD-TYPE     84     80     96
D1253V4, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR3 MUTATED        1      4      4
  HEATR3 WILD-TYPE     88    156    134
D1253V5, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR3 MUTATED        4      4      1
  HEATR3 WILD-TYPE    178    129     71
D1253V6, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR3 MUTATED        1      3      3      3
  HEATR3 WILD-TYPE    111     93     89    183
D1253V7, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HEATR3 MUTATED        1      1      3      0      3      1      1
  HEATR3 WILD-TYPE     59     49     46     40     60    124     98
D1253V8, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR3 MUTATED        2      3      1      3
  HEATR3 WILD-TYPE    128     75     67    193
D1253V9, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HEATR3 MUTATED        0      2      0      0      4      0      0      1
  HEATR3 WILD-TYPE     40     60     28     80     65     48     43     27
                  vv
clus               CLUS_9
  HEATR3 MUTATED        2
  HEATR3 WILD-TYPE     72
D1253V10, multiclass
        clus
vv       HEATR3 MUTATED HEATR3 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR3 MUTATED        0      1      0      1
  HEATR3 WILD-TYPE     33     30     27     18
D1253V11, multiclass
[1] "Remove cluster labels:" "HEATR3 MUTATED"        
clus
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6465 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR3 MUTATED        1      0      1      0
  HEATR3 WILD-TYPE     53     10     23     22
D1253V12, multiclass
[1] "Remove cluster labels:" "HEATR3 MUTATED"        
clus
  HEATR3 MUTATED HEATR3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6465 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" "HEATR3 WILD-TYPE" 

Clustering(1254) Variable = STAT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT3 MUTATED        0      0      0      1
  STAT3 WILD-TYPE     46     58     64     42
D1254V1, multiclass
[1] "Remove cluster labels:" "STAT3 MUTATED"         
clus
  STAT3 MUTATED STAT3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT3 MUTATED        0      1      0
  STAT3 WILD-TYPE     51     82     77
D1254V2, multiclass
[1] "Remove cluster labels:" "STAT3 MUTATED"         
clus
  STAT3 MUTATED STAT3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"STAT3 WILD-TYPE" "STAT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT3 MUTATED        6      3      0      0
  STAT3 WILD-TYPE    172    180    101     20
D1254V3, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT3 MUTATED        3      1      4
  STAT3 WILD-TYPE     84     79     96
D1254V4, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT3 MUTATED        1      4      3
  STAT3 WILD-TYPE     88    156    135
D1254V5, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT3 MUTATED        5      3      0
  STAT3 WILD-TYPE    177    130     72
D1254V6, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT3 MUTATED        2      0      5      2
  STAT3 WILD-TYPE    110     96     87    184
D1254V7, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             0              96
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAT3 MUTATED        4      0      3      0      0      0      2
  STAT3 WILD-TYPE     56     50     46     40     63    125     97
D1254V8, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT3 MUTATED        7      0      0      2
  STAT3 WILD-TYPE    123     78     68    194
D1254V9, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STAT3 MUTATED        2      2      1      1      1      0      1      0
  STAT3 WILD-TYPE     38     60     27     79     68     48     42     28
                 vv
clus              CLUS_9
  STAT3 MUTATED        1
  STAT3 WILD-TYPE     73
D1254V10, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT3 MUTATED        0      0      0      5
  STAT3 WILD-TYPE     33     31     27     14
D1254V11, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT3 MUTATED        4      0      1      0
  STAT3 WILD-TYPE     50     10     23     22
D1254V12, multiclass
        clus
vv       STAT3 MUTATED STAT3 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1255) Variable = STK35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK35 MUTATED        1      0      0      0
  STK35 WILD-TYPE     45     58     64     43
D1255V1, multiclass
[1] "Remove cluster labels:" "STK35 MUTATED"         
clus
  STK35 MUTATED STK35 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK35 MUTATED        1      0      0
  STK35 WILD-TYPE     50     83     77
D1255V2, multiclass
[1] "Remove cluster labels:" "STK35 MUTATED"         
clus
  STK35 MUTATED STK35 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK35 MUTATED        6      0      0      0
  STK35 WILD-TYPE    172    183    101     20
D1255V3, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK35 MUTATED        2      0      3
  STK35 WILD-TYPE     85     80     97
D1255V4, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK35 MUTATED        2      0      3
  STK35 WILD-TYPE     87    160    135
D1255V5, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0             160
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK35 MUTATED        5      0      0
  STK35 WILD-TYPE    177    133     72
D1255V6, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK35 MUTATED        0      2      3      1
  STK35 WILD-TYPE    112     94     89    185
D1255V7, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK35 MUTATED        0      1      3      0      1      0      1
  STK35 WILD-TYPE     60     49     46     40     62    125     98
D1255V8, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK35 MUTATED        3      1      0      2
  STK35 WILD-TYPE    127     77     68    194
D1255V9, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STK35 MUTATED        1      1      0      1      3      0      0      0
  STK35 WILD-TYPE     39     61     28     79     66     48     43     28
                 vv
clus              CLUS_9
  STK35 MUTATED        0
  STK35 WILD-TYPE     74
D1255V10, multiclass
        clus
vv       STK35 MUTATED STK35 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK35 MUTATED        0      1      0      1
  STK35 WILD-TYPE     33     30     27     18
D1255V11, multiclass
[1] "Remove cluster labels:" "STK35 MUTATED"         
clus
  STK35 MUTATED STK35 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6653      TCGA-A6-6654 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK35 MUTATED        2      0      0      0
  STK35 WILD-TYPE     52     10     24     22
D1255V12, multiclass
[1] "Remove cluster labels:" "STK35 MUTATED"         
clus
  STK35 MUTATED STK35 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6653      TCGA-A6-6654 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" "STK35 WILD-TYPE" 

Clustering(1256) Variable = ASB11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        0      0      0      0
  ASB11 WILD-TYPE     46     58     64     43
D1256V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        0      0      0
  ASB11 WILD-TYPE     51     83     77
D1256V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        7      0      0      1
  ASB11 WILD-TYPE    171    183    101     19
D1256V3, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        3      0      5
  ASB11 WILD-TYPE     84     80     95
D1256V4, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        0      1      5
  ASB11 WILD-TYPE     89    159    133
D1256V5, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        4      2      0
  ASB11 WILD-TYPE    178    131     72
D1256V6, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        0      5      3      0
  ASB11 WILD-TYPE    112     91     89    186
D1256V7, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASB11 MUTATED        0      1      5      0      2      0      0
  ASB11 WILD-TYPE     60     49     44     40     61    125     99
D1256V8, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        4      2      0      2
  ASB11 WILD-TYPE    126     76     68    194
D1256V9, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ASB11 MUTATED        2      2      0      0      2      0      1      0
  ASB11 WILD-TYPE     38     60     28     80     67     48     42     28
                 vv
clus              CLUS_9
  ASB11 MUTATED        1
  ASB11 WILD-TYPE     73
D1256V10, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        1      0      0      1
  ASB11 WILD-TYPE     32     31     27     18
D1256V11, multiclass
[1] "Remove cluster labels:" "ASB11 MUTATED"         
clus
  ASB11 MUTATED ASB11 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        2      0      0      0
  ASB11 WILD-TYPE     52     10     24     22
D1256V12, multiclass
[1] "Remove cluster labels:" "ASB11 MUTATED"         
clus
  ASB11 MUTATED ASB11 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" "ASB11 WILD-TYPE" 

Clustering(1257) Variable = C7ORF50 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        0      0      1      0
  C7ORF50 WILD-TYPE     46     58     63     43
D1257V1, multiclass
[1] "Remove cluster labels:" "C7ORF50 MUTATED"       
clus
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        0      1      0
  C7ORF50 WILD-TYPE     51     82     77
D1257V2, multiclass
[1] "Remove cluster labels:" "C7ORF50 MUTATED"       
clus
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        4      1      0      0
  C7ORF50 WILD-TYPE    174    182    101     20
D1257V3, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        0      0      4
  C7ORF50 WILD-TYPE     87     80     96
D1257V4, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        0      2      2
  C7ORF50 WILD-TYPE     89    158    136
D1257V5, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        1      3      0
  C7ORF50 WILD-TYPE    181    130     72
D1257V6, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        0      4      0      1
  C7ORF50 WILD-TYPE    112     92     92    185
D1257V7, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               0                92
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C7ORF50 MUTATED        0      0      4      0      0      1      0
  C7ORF50 WILD-TYPE     60     50     45     40     63    124     99
D1257V8, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        4      0      0      1
  C7ORF50 WILD-TYPE    126     78     68    195
D1257V9, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C7ORF50 MUTATED        1      0      0      0      3      0      0      0
  C7ORF50 WILD-TYPE     39     62     28     80     66     48     43     28
                   vv
clus                CLUS_9
  C7ORF50 MUTATED        1
  C7ORF50 WILD-TYPE     73
D1257V10, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        0      0      0      1
  C7ORF50 WILD-TYPE     33     31     27     18
D1257V11, multiclass
[1] "Remove cluster labels:" "C7ORF50 MUTATED"       
clus
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-G5-6641 
"C7ORF50 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        0      0      1      0
  C7ORF50 WILD-TYPE     54     10     23     22
D1257V12, multiclass
[1] "Remove cluster labels:" "C7ORF50 MUTATED"       
clus
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" "C7ORF50 WILD-TYPE" 
       TCGA-G5-6641 
"C7ORF50 WILD-TYPE" 

Clustering(1258) Variable = ATP13A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A5 MUTATED        2      0      3      3
  ATP13A5 WILD-TYPE     44     58     61     40
D1258V1, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               3                61
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A5 MUTATED        2      3      3
  ATP13A5 WILD-TYPE     49     80     74
D1258V2, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               3                80
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A5 MUTATED       19      6      2      0
  ATP13A5 WILD-TYPE    159    177     99     20
D1258V3, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1              19               159
  CLUS_2               6               177
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A5 MUTATED        9      0     10
  ATP13A5 WILD-TYPE     78     80     90
D1258V4, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               0                80
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A5 MUTATED        3      7     11
  ATP13A5 WILD-TYPE     86    153    127
D1258V5, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               7               153
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A5 MUTATED       13      6      2
  ATP13A5 WILD-TYPE    169    127     70
D1258V6, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1              13               169
  CLUS_2               6               127
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A5 MUTATED        1      8      9      9
  ATP13A5 WILD-TYPE    111     88     83    177
D1258V7, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               8                88
  CLUS_3               9                83
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP13A5 MUTATED        2      5      6      1      5      3      5
  ATP13A5 WILD-TYPE     58     45     43     39     58    122     94
D1258V8, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               5                45
  CLUS_3               6                43
  CLUS_4               1                39
  CLUS_5               5                58
  CLUS_6               3               122
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A5 MUTATED       10      5      1     11
  ATP13A5 WILD-TYPE    120     73     67    185
D1258V9, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1              10               120
  CLUS_2               5                73
  CLUS_3               1                67
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP13A5 MUTATED        2      5      3      5      7      1      1      0
  ATP13A5 WILD-TYPE     38     57     25     75     62     47     42     28
                   vv
clus                CLUS_9
  ATP13A5 MUTATED        3
  ATP13A5 WILD-TYPE     71
D1258V10, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               3                25
  CLUS_4               5                75
  CLUS_5               7                62
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A5 MUTATED        1      3      0      4
  ATP13A5 WILD-TYPE     32     28     27     15
D1258V11, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                28
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A5 MUTATED        7      0      1      0
  ATP13A5 WILD-TYPE     47     10     23     22
D1258V12, multiclass
        clus
vv       ATP13A5 MUTATED ATP13A5 WILD-TYPE
  CLUS_1               7                47
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1259) Variable = ZNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        5      1      0      5
  ZNF43 WILD-TYPE     41     57     64     38
D1259V1, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        6      2      3
  ZNF43 WILD-TYPE     45     81     74
D1259V2, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED       13      6      2      0
  ZNF43 WILD-TYPE    165    177     99     20
D1259V3, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             6             177
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        3      3      4
  ZNF43 WILD-TYPE     84     77     96
D1259V4, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        2      8      9
  ZNF43 WILD-TYPE     87    152    129
D1259V5, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED       11      6      2
  ZNF43 WILD-TYPE    171    127     70
D1259V6, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        2      3      6     11
  ZNF43 WILD-TYPE    110     93     86    175
D1259V7, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF43 MUTATED        3      2      3      1      3      3      7
  ZNF43 WILD-TYPE     57     48     46     39     60    122     92
D1259V8, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        6      3      2     10
  ZNF43 WILD-TYPE    124     75     66    186
D1259V9, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF43 MUTATED        3      3      1      1      6      2      1      3
  ZNF43 WILD-TYPE     37     59     27     79     63     46     42     25
                 vv
clus              CLUS_9
  ZNF43 MUTATED        1
  ZNF43 WILD-TYPE     73
D1259V10, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             3              25
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        0      0      1      4
  ZNF43 WILD-TYPE     33     31     26     15
D1259V11, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        2      0      1      2
  ZNF43 WILD-TYPE     52     10     23     20
D1259V12, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1260) Variable = INPPL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        3      0      1      0
  INPPL1 WILD-TYPE     43     58     63     43
D1260V1, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED        3      0      1
  INPPL1 WILD-TYPE     48     83     76
D1260V2, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        6      2      5      0
  INPPL1 WILD-TYPE    172    181     96     20
D1260V3, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED        5      1      4
  INPPL1 WILD-TYPE     82     79     96
D1260V4, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED        1      2      8
  INPPL1 WILD-TYPE     88    158    130
D1260V5, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED        8      2      1
  INPPL1 WILD-TYPE    174    131     71
D1260V6, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        1      4      4      5
  INPPL1 WILD-TYPE    111     92     88    181
D1260V7, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  INPPL1 MUTATED        0      2      6      0      0      2      4
  INPPL1 WILD-TYPE     60     48     43     40     63    123     95
D1260V8, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        4      2      1      7
  INPPL1 WILD-TYPE    126     76     67    189
D1260V9, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  INPPL1 MUTATED        0      2      1      2      8      0      1      0
  INPPL1 WILD-TYPE     40     60     27     78     61     48     42     28
                  vv
clus               CLUS_9
  INPPL1 MUTATED        0
  INPPL1 WILD-TYPE     74
D1260V10, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        2      0      0      2
  INPPL1 WILD-TYPE     31     31     27     17
D1260V11, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        3      0      1      0
  INPPL1 WILD-TYPE     51     10     23     22
D1260V12, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1261) Variable = TFAP2C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFAP2C MUTATED        1      0      1      0
  TFAP2C WILD-TYPE     45     58     63     43
D1261V1, multiclass
[1] "Remove cluster labels:" "TFAP2C MUTATED"        
clus
  TFAP2C MUTATED TFAP2C WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AY-4071 
"TFAP2C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TFAP2C MUTATED        0      2      0
  TFAP2C WILD-TYPE     51     81     77
D1261V2, multiclass
[1] "Remove cluster labels:" "TFAP2C MUTATED"        
clus
  TFAP2C MUTATED TFAP2C WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AY-4071 
"TFAP2C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFAP2C MUTATED        6      4      1      0
  TFAP2C WILD-TYPE    172    179    100     20
D1261V3, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TFAP2C MUTATED        4      1      4
  TFAP2C WILD-TYPE     83     79     96
D1261V4, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TFAP2C MUTATED        1      3      4
  TFAP2C WILD-TYPE     88    157    134
D1261V5, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TFAP2C MUTATED        6      2      0
  TFAP2C WILD-TYPE    176    131     72
D1261V6, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFAP2C MUTATED        4      3      2      2
  TFAP2C WILD-TYPE    108     93     90    184
D1261V7, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TFAP2C MUTATED        4      2      3      0      0      2      0
  TFAP2C WILD-TYPE     56     48     46     40     63    123     99
D1261V8, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFAP2C MUTATED        5      2      2      2
  TFAP2C WILD-TYPE    125     76     66    194
D1261V9, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TFAP2C MUTATED        0      3      0      2      2      2      2      0
  TFAP2C WILD-TYPE     40     59     28     78     67     46     41     28
                  vv
clus               CLUS_9
  TFAP2C MUTATED        0
  TFAP2C WILD-TYPE     74
D1261V10, multiclass
        clus
vv       TFAP2C MUTATED TFAP2C WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFAP2C MUTATED        1      0      1      0
  TFAP2C WILD-TYPE     32     31     26     19
D1261V11, multiclass
[1] "Remove cluster labels:" "TFAP2C MUTATED"        
clus
  TFAP2C MUTATED TFAP2C WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8       TCGA-EI-6506 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFAP2C MUTATED        0      0      1      1
  TFAP2C WILD-TYPE     54     10     23     21
D1261V12, multiclass
[1] "Remove cluster labels:" "TFAP2C MUTATED"        
clus
  TFAP2C MUTATED TFAP2C WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8       TCGA-EI-6506 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" "TFAP2C WILD-TYPE" 

Clustering(1262) Variable = GAD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAD2 MUTATED        4      0      1      0
  GAD2 WILD-TYPE     42     58     63     43
D1262V1, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAD2 MUTATED        4      0      1
  GAD2 WILD-TYPE     47     83     76
D1262V2, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAD2 MUTATED       12      2      2      0
  GAD2 WILD-TYPE    166    181     99     20
D1262V3, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAD2 MUTATED        4      3      4
  GAD2 WILD-TYPE     83     77     96
D1262V4, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAD2 MUTATED        1      6      7
  GAD2 WILD-TYPE     88    154    131
D1262V5, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAD2 MUTATED        6      6      2
  GAD2 WILD-TYPE    176    127     70
D1262V6, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAD2 MUTATED        3      5      3      5
  GAD2 WILD-TYPE    109     91     89    181
D1262V7, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAD2 MUTATED        2      2      3      1      3      1      4
  GAD2 WILD-TYPE     58     48     46     39     60    124     95
D1262V8, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAD2 MUTATED        6      4      0      5
  GAD2 WILD-TYPE    124     74     68    191
D1262V9, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GAD2 MUTATED        4      2      0      1      6      2      0      0      0
  GAD2 WILD-TYPE     36     60     28     79     63     46     43     28     74
D1262V10, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAD2 MUTATED        1      2      0      0
  GAD2 WILD-TYPE     32     29     27     19
D1262V11, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAD2 MUTATED        2      0      0      1
  GAD2 WILD-TYPE     52     10     24     21
D1262V12, multiclass
        clus
vv       GAD2 MUTATED GAD2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1263) Variable = CCDC66 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC66 MUTATED        1      0      0      2
  CCDC66 WILD-TYPE     45     58     64     41
D1263V1, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC66 MUTATED        1      0      2
  CCDC66 WILD-TYPE     50     83     75
D1263V2, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC66 MUTATED       11      1      0      0
  CCDC66 WILD-TYPE    167    182    101     20
D1263V3, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC66 MUTATED        4      1      4
  CCDC66 WILD-TYPE     83     79     96
D1263V4, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC66 MUTATED        2      3      4
  CCDC66 WILD-TYPE     87    157    134
D1263V5, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC66 MUTATED        6      3      0
  CCDC66 WILD-TYPE    176    130     72
D1263V6, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC66 MUTATED        2      2      6      3
  CCDC66 WILD-TYPE    110     94     86    183
D1263V7, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              6               86
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC66 MUTATED        3      0      7      0      1      0      2
  CCDC66 WILD-TYPE     57     50     42     40     62    125     97
D1263V8, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC66 MUTATED        4      3      1      5
  CCDC66 WILD-TYPE    126     75     67    191
D1263V9, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC66 MUTATED        1      2      1      2      5      0      1      1
  CCDC66 WILD-TYPE     39     60     27     78     64     48     42     27
                  vv
clus               CLUS_9
  CCDC66 MUTATED        0
  CCDC66 WILD-TYPE     74
D1263V10, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC66 MUTATED        1      0      0      3
  CCDC66 WILD-TYPE     32     31     27     16
D1263V11, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC66 MUTATED        3      0      1      0
  CCDC66 WILD-TYPE     51     10     23     22
D1263V12, multiclass
        clus
vv       CCDC66 MUTATED CCDC66 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1264) Variable = C10ORF119 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF119 MUTATED        1      0      0      1
  C10ORF119 WILD-TYPE     45     58     64     42
D1264V1, multiclass
[1] "Remove cluster labels:" "C10ORF119 MUTATED"     
clus
  C10ORF119 MUTATED C10ORF119 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-3994 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A017          TCGA-AA-A01D          TCGA-AA-A01F 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01I          TCGA-AA-A01K 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A024          TCGA-AA-A029 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AF-2689          TCGA-AF-2691 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3574          TCGA-AG-3575          TCGA-AG-3578 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3608          TCGA-AG-3609          TCGA-AG-3611 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3612          TCGA-AG-3726          TCGA-AG-3727 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3881          TCGA-AG-3882 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3883          TCGA-AG-3885          TCGA-AG-3887 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3890          TCGA-AG-3892          TCGA-AG-3893 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3896          TCGA-AG-3898 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-3909 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4005 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-4015 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF119 MUTATED        0      2      0
  C10ORF119 WILD-TYPE     51     81     77
D1264V2, multiclass
[1] "Remove cluster labels:" "C10ORF119 MUTATED"     
clus
  C10ORF119 MUTATED C10ORF119 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-3994 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A017          TCGA-AA-A01D          TCGA-AA-A01F 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01I          TCGA-AA-A01K 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A024          TCGA-AA-A029 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AF-2689          TCGA-AF-2691 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3574          TCGA-AG-3575          TCGA-AG-3578 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3608          TCGA-AG-3609          TCGA-AG-3611 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3612          TCGA-AG-3726          TCGA-AG-3727 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3881          TCGA-AG-3882 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3883          TCGA-AG-3885          TCGA-AG-3887 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3890          TCGA-AG-3892          TCGA-AG-3893 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3896          TCGA-AG-3898 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-3909 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4005 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-4015 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF119 MUTATED        6      1      2      0
  C10ORF119 WILD-TYPE    172    182     99     20
D1264V3, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 6                 172
  CLUS_2                 1                 182
  CLUS_3                 2                  99
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF119 MUTATED        3      1      3
  C10ORF119 WILD-TYPE     84     79     97
D1264V4, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 3                  84
  CLUS_2                 1                  79
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF119 MUTATED        0      3      3
  C10ORF119 WILD-TYPE     89    157    135
D1264V5, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 3                 157
  CLUS_3                 3                 135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF119 MUTATED        1      4      1
  C10ORF119 WILD-TYPE    181    129     71
D1264V6, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 1                 181
  CLUS_2                 4                 129
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF119 MUTATED        2      3      2      2
  C10ORF119 WILD-TYPE    110     93     90    184
D1264V7, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 3                  93
  CLUS_3                 2                  90
  CLUS_4                 2                 184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C10ORF119 MUTATED        0      4      2      0      1      1      1
  C10ORF119 WILD-TYPE     60     46     47     40     62    124     98
D1264V8, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 4                  46
  CLUS_3                 2                  47
  CLUS_4                 0                  40
  CLUS_5                 1                  62
  CLUS_6                 1                 124
  CLUS_7                 1                  98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF119 MUTATED        3      1      1      4
  C10ORF119 WILD-TYPE    127     77     67    192
D1264V9, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 3                 127
  CLUS_2                 1                  77
  CLUS_3                 1                  67
  CLUS_4                 4                 192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C10ORF119 MUTATED        1      0      2      3      0      0      2      0
  C10ORF119 WILD-TYPE     39     62     26     77     69     48     41     28
                     vv
clus                  CLUS_9
  C10ORF119 MUTATED        1
  C10ORF119 WILD-TYPE     73
D1264V10, multiclass
        clus
vv       C10ORF119 MUTATED C10ORF119 WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 0                  62
  CLUS_3                 2                  26
  CLUS_4                 3                  77
  CLUS_5                 0                  69
  CLUS_6                 0                  48
  CLUS_7                 2                  41
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF119 MUTATED        1      0      0      1
  C10ORF119 WILD-TYPE     32     31     27     18
D1264V11, multiclass
[1] "Remove cluster labels:" "C10ORF119 MUTATED"     
clus
  C10ORF119 MUTATED C10ORF119 WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1HA          TCGA-DM-A282 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28F          TCGA-DY-A1DC 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G5-6235          TCGA-G5-6641 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF119 MUTATED        2      0      0      0
  C10ORF119 WILD-TYPE     52     10     24     22
D1264V12, multiclass
[1] "Remove cluster labels:" "C10ORF119 MUTATED"     
clus
  C10ORF119 MUTATED C10ORF119 WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1HA          TCGA-DM-A282 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28F          TCGA-DY-A1DC 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G5-6235          TCGA-G5-6641 
"C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" "C10ORF119 WILD-TYPE" 

Clustering(1265) Variable = ZMYND8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        3      1      0      3
  ZMYND8 WILD-TYPE     43     57     64     40
D1265V1, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        3      2      2
  ZMYND8 WILD-TYPE     48     81     75
D1265V2, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED       18      3      5      2
  ZMYND8 WILD-TYPE    160    180     96     18
D1265V3, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              3              180
  CLUS_3              5               96
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        5      2     14
  ZMYND8 WILD-TYPE     82     78     86
D1265V4, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3             14               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        1      8     12
  ZMYND8 WILD-TYPE     88    152    126
D1265V5, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              8              152
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        8     11      2
  ZMYND8 WILD-TYPE    174    122     70
D1265V6, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              8              174
  CLUS_2             11              122
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        3     13      5      8
  ZMYND8 WILD-TYPE    109     83     87    178
D1265V7, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              3              109
  CLUS_2             13               83
  CLUS_3              5               87
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMYND8 MUTATED        3      7     10      1      1      1      6
  ZMYND8 WILD-TYPE     57     43     39     39     62    124     93
D1265V8, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              7               43
  CLUS_3             10               39
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED       13      1      3     11
  ZMYND8 WILD-TYPE    117     77     65    185
D1265V9, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1             13              117
  CLUS_2              1               77
  CLUS_3              3               65
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZMYND8 MUTATED        1      1      4      5      9      0      5      1
  ZMYND8 WILD-TYPE     39     61     24     75     60     48     38     27
                  vv
clus               CLUS_9
  ZMYND8 MUTATED        2
  ZMYND8 WILD-TYPE     72
D1265V10, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              4               24
  CLUS_4              5               75
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              5               38
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        2      1      2      2
  ZMYND8 WILD-TYPE     31     30     25     17
D1265V11, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        1      0      4      2
  ZMYND8 WILD-TYPE     53     10     20     20
D1265V12, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1266) Variable = NFASC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        7      2      2      4
  NFASC WILD-TYPE     39     56     62     39
D1266V1, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             7              39
  CLUS_2             2              56
  CLUS_3             2              62
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFASC MUTATED        7      6      2
  NFASC WILD-TYPE     44     77     75
D1266V2, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             7              44
  CLUS_2             6              77
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED       21      7      5      1
  NFASC WILD-TYPE    157    176     96     19
D1266V3, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1            21             157
  CLUS_2             7             176
  CLUS_3             5              96
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFASC MUTATED        7      5      7
  NFASC WILD-TYPE     80     75     93
D1266V4, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             7              80
  CLUS_2             5              75
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFASC MUTATED        5      8     15
  NFASC WILD-TYPE     84    152    123
D1266V5, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             5              84
  CLUS_2             8             152
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFASC MUTATED       14      8      6
  NFASC WILD-TYPE    168    125     66
D1266V6, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1            14             168
  CLUS_2             8             125
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        5      8      5     17
  NFASC WILD-TYPE    107     88     87    169
D1266V7, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             5             107
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4            17             169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFASC MUTATED        4      5      6      2      2      7      9
  NFASC WILD-TYPE     56     45     43     38     61    118     90
D1266V8, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             4              56
  CLUS_2             5              45
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             7             118
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        9      4      3     18
  NFASC WILD-TYPE    121     74     65    178
D1266V9, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             3              65
  CLUS_4            18             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NFASC MUTATED        3      5      2      3     10      1      2      2
  NFASC WILD-TYPE     37     57     26     77     59     47     41     26
                 vv
clus              CLUS_9
  NFASC MUTATED        6
  NFASC WILD-TYPE     68
D1266V10, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5            10              59
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             6              68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        1      0      0      3
  NFASC WILD-TYPE     32     31     27     16
D1266V11, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        2      0      1      1
  NFASC WILD-TYPE     52     10     23     21
D1266V12, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1267) Variable = ACTA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTA1 MUTATED        2      0      0      1
  ACTA1 WILD-TYPE     44     58     64     42
D1267V1, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTA1 MUTATED        2      0      1
  ACTA1 WILD-TYPE     49     83     76
D1267V2, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTA1 MUTATED       11      1      1      1
  ACTA1 WILD-TYPE    167    182    100     19
D1267V3, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTA1 MUTATED        5      1      4
  ACTA1 WILD-TYPE     82     79     96
D1267V4, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTA1 MUTATED        1      6      5
  ACTA1 WILD-TYPE     88    154    133
D1267V5, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTA1 MUTATED        5      5      2
  ACTA1 WILD-TYPE    177    128     70
D1267V6, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTA1 MUTATED        2      3      5      4
  ACTA1 WILD-TYPE    110     93     87    182
D1267V7, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTA1 MUTATED        1      1      6      0      3      0      3
  ACTA1 WILD-TYPE     59     49     43     40     60    125     96
D1267V8, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTA1 MUTATED        5      5      0      4
  ACTA1 WILD-TYPE    125     73     68    192
D1267V9, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACTA1 MUTATED        1      3      1      2      4      1      1      1
  ACTA1 WILD-TYPE     39     59     27     78     65     47     42     27
                 vv
clus              CLUS_9
  ACTA1 MUTATED        0
  ACTA1 WILD-TYPE     74
D1267V10, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTA1 MUTATED        3      1      0      1
  ACTA1 WILD-TYPE     30     30     27     18
D1267V11, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTA1 MUTATED        2      0      2      1
  ACTA1 WILD-TYPE     52     10     22     21
D1267V12, multiclass
        clus
vv       ACTA1 MUTATED ACTA1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1268) Variable = LYG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYG1 MUTATED        1      0      1      0
  LYG1 WILD-TYPE     45     58     63     43
D1268V1, multiclass
[1] "Remove cluster labels:" "LYG1 MUTATED"          
clus
  LYG1 MUTATED LYG1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856     TCGA-AA-3858 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979     TCGA-AA-3980 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AY-4071 
"LYG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYG1 MUTATED        1      0      1
  LYG1 WILD-TYPE     50     83     76
D1268V2, multiclass
[1] "Remove cluster labels:" "LYG1 MUTATED"          
clus
  LYG1 MUTATED LYG1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856     TCGA-AA-3858 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979     TCGA-AA-3980 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AY-4071 
"LYG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYG1 MUTATED        5      1      0      0
  LYG1 WILD-TYPE    173    182    101     20
D1268V3, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYG1 MUTATED        2      0      1
  LYG1 WILD-TYPE     85     80     99
D1268V4, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYG1 MUTATED        0      2      1
  LYG1 WILD-TYPE     89    158    137
D1268V5, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LYG1 MUTATED        1      2      0
  LYG1 WILD-TYPE    181    131     72
D1268V6, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYG1 MUTATED        0      2      1      3
  LYG1 WILD-TYPE    112     94     91    183
D1268V7, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LYG1 MUTATED        0      0      2      0      0      1      3
  LYG1 WILD-TYPE     60     50     47     40     63    124     96
D1268V8, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYG1 MUTATED        1      1      0      4
  LYG1 WILD-TYPE    129     77     68    192
D1268V9, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LYG1 MUTATED        0      1      0      0      3      0      0      0      2
  LYG1 WILD-TYPE     40     61     28     80     66     48     43     28     72
D1268V10, multiclass
        clus
vv       LYG1 MUTATED LYG1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYG1 MUTATED        0      0      0      1
  LYG1 WILD-TYPE     33     31     27     18
D1268V11, multiclass
[1] "Remove cluster labels:" "LYG1 MUTATED"          
clus
  LYG1 MUTATED LYG1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-G5-6641 
"LYG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYG1 MUTATED        1      0      0      0
  LYG1 WILD-TYPE     53     10     24     22
D1268V12, multiclass
[1] "Remove cluster labels:" "LYG1 MUTATED"          
clus
  LYG1 MUTATED LYG1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" "LYG1 WILD-TYPE" 
    TCGA-G5-6641 
"LYG1 WILD-TYPE" 

Clustering(1269) Variable = EXPH5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        3      0      0      5
  EXPH5 WILD-TYPE     43     58     64     38
D1269V1, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXPH5 MUTATED        5      1      2
  EXPH5 WILD-TYPE     46     82     75
D1269V2, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED       17      5      2      0
  EXPH5 WILD-TYPE    161    178     99     20
D1269V3, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXPH5 MUTATED        9      1      5
  EXPH5 WILD-TYPE     78     79     95
D1269V4, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXPH5 MUTATED        2      5     11
  EXPH5 WILD-TYPE     87    155    127
D1269V5, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXPH5 MUTATED       13      4      1
  EXPH5 WILD-TYPE    169    129     71
D1269V6, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1            13             169
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        3      6      6      9
  EXPH5 WILD-TYPE    109     90     86    177
D1269V7, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EXPH5 MUTATED        2      3      6      3      2      1      7
  EXPH5 WILD-TYPE     58     47     43     37     61    124     92
D1269V8, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        6      7      1      9
  EXPH5 WILD-TYPE    124     71     67    187
D1269V9, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             7              71
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EXPH5 MUTATED        2      6      1      4      6      0      2      2
  EXPH5 WILD-TYPE     38     56     27     76     63     48     41     26
                 vv
clus              CLUS_9
  EXPH5 MUTATED        0
  EXPH5 WILD-TYPE     74
D1269V10, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        3      2      1      2
  EXPH5 WILD-TYPE     30     29     26     17
D1269V11, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        7      0      1      0
  EXPH5 WILD-TYPE     47     10     23     22
D1269V12, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1270) Variable = LEPRE1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPRE1 MUTATED        0      0      0      0
  LEPRE1 WILD-TYPE     46     58     64     43
D1270V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LEPRE1 MUTATED        0      0      0
  LEPRE1 WILD-TYPE     51     83     77
D1270V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPRE1 MUTATED        7      1      0      1
  LEPRE1 WILD-TYPE    171    182    101     19
D1270V3, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LEPRE1 MUTATED        3      0      6
  LEPRE1 WILD-TYPE     84     80     94
D1270V4, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LEPRE1 MUTATED        3      3      3
  LEPRE1 WILD-TYPE     86    157    135
D1270V5, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LEPRE1 MUTATED        7      1      1
  LEPRE1 WILD-TYPE    175    132     71
D1270V6, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPRE1 MUTATED        0      6      3      0
  LEPRE1 WILD-TYPE    112     90     89    186
D1270V7, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LEPRE1 MUTATED        0      0      6      2      1      0      0
  LEPRE1 WILD-TYPE     60     50     43     38     62    125     99
D1270V8, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPRE1 MUTATED        6      2      0      1
  LEPRE1 WILD-TYPE    124     76     68    195
D1270V9, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LEPRE1 MUTATED        3      3      0      0      3      0      0      0
  LEPRE1 WILD-TYPE     37     59     28     80     66     48     43     28
                  vv
clus               CLUS_9
  LEPRE1 MUTATED        0
  LEPRE1 WILD-TYPE     74
D1270V10, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPRE1 MUTATED        1      1      0      2
  LEPRE1 WILD-TYPE     32     30     27     17
D1270V11, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPRE1 MUTATED        3      0      1      0
  LEPRE1 WILD-TYPE     51     10     23     22
D1270V12, multiclass
        clus
vv       LEPRE1 MUTATED LEPRE1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1271) Variable = COL6A5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL6A5 MUTATED        3      0      1      3
  COL6A5 WILD-TYPE     43     58     63     40
D1271V1, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL6A5 MUTATED        3      2      2
  COL6A5 WILD-TYPE     48     81     75
D1271V2, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL6A5 MUTATED       22     10      3      0
  COL6A5 WILD-TYPE    156    173     98     20
D1271V3, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1             22              156
  CLUS_2             10              173
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL6A5 MUTATED       13      5     10
  COL6A5 WILD-TYPE     74     75     90
D1271V4, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1             13               74
  CLUS_2              5               75
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL6A5 MUTATED        4     11     18
  COL6A5 WILD-TYPE     85    149    120
D1271V5, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             11              149
  CLUS_3             18              120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL6A5 MUTATED       16     12      5
  COL6A5 WILD-TYPE    166    121     67
D1271V6, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1             16              166
  CLUS_2             12              121
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL6A5 MUTATED        9     10      9      8
  COL6A5 WILD-TYPE    103     86     83    178
D1271V7, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              9              103
  CLUS_2             10               86
  CLUS_3              9               83
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL6A5 MUTATED        5      3     11      0      9      3      5
  COL6A5 WILD-TYPE     55     47     38     40     54    122     94
D1271V8, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              3               47
  CLUS_3             11               38
  CLUS_4              0               40
  CLUS_5              9               54
  CLUS_6              3              122
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL6A5 MUTATED       10      9      4     12
  COL6A5 WILD-TYPE    120     69     64    184
D1271V9, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              9               69
  CLUS_3              4               64
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COL6A5 MUTATED        3      6      1      3     11      2      5      0
  COL6A5 WILD-TYPE     37     56     27     77     58     46     38     28
                  vv
clus               CLUS_9
  COL6A5 MUTATED        4
  COL6A5 WILD-TYPE     70
D1271V10, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5             11               58
  CLUS_6              2               46
  CLUS_7              5               38
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL6A5 MUTATED        2      4      1      4
  COL6A5 WILD-TYPE     31     27     26     15
D1271V11, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              4               27
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL6A5 MUTATED        4      1      3      3
  COL6A5 WILD-TYPE     50      9     21     19
D1271V12, multiclass
        clus
vv       COL6A5 MUTATED COL6A5 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              3               21
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1272) Variable = RAB3C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB3C MUTATED        1      0      1      1
  RAB3C WILD-TYPE     45     58     63     42
D1272V1, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB3C MUTATED        1      1      1
  RAB3C WILD-TYPE     50     82     76
D1272V2, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB3C MUTATED        9      3      1      2
  RAB3C WILD-TYPE    169    180    100     18
D1272V3, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB3C MUTATED        8      1      2
  RAB3C WILD-TYPE     79     79     98
D1272V4, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             8              79
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB3C MUTATED        3      5      6
  RAB3C WILD-TYPE     86    155    132
D1272V5, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB3C MUTATED        5      6      3
  RAB3C WILD-TYPE    177    127     69
D1272V6, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB3C MUTATED        1      5      3      6
  RAB3C WILD-TYPE    111     91     89    180
D1272V7, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB3C MUTATED        1      2      2      2      3      2      3
  RAB3C WILD-TYPE     59     48     47     38     60    123     96
D1272V8, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB3C MUTATED        4      5      0      6
  RAB3C WILD-TYPE    126     73     68    190
D1272V9, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             4             126
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB3C MUTATED        1      3      1      3      4      0      1      0
  RAB3C WILD-TYPE     39     59     27     77     65     48     42     28
                 vv
clus              CLUS_9
  RAB3C MUTATED        2
  RAB3C WILD-TYPE     72
D1272V10, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB3C MUTATED        0      1      1      1
  RAB3C WILD-TYPE     33     30     26     18
D1272V11, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB3C MUTATED        2      0      0      1
  RAB3C WILD-TYPE     52     10     24     21
D1272V12, multiclass
        clus
vv       RAB3C MUTATED RAB3C WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1273) Variable = MAP2K1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        1      0      2      2
  MAP2K1 WILD-TYPE     45     58     62     41
D1273V1, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        2      2      1
  MAP2K1 WILD-TYPE     49     81     76
D1273V2, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        9      1      1      0
  MAP2K1 WILD-TYPE    169    182    100     20
D1273V3, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        4      0      3
  MAP2K1 WILD-TYPE     83     80     97
D1273V4, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        1      5      4
  MAP2K1 WILD-TYPE     88    155    134
D1273V5, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        4      4      2
  MAP2K1 WILD-TYPE    178    129     70
D1273V6, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        0      6      0      6
  MAP2K1 WILD-TYPE    112     90     92    180
D1273V7, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              0               92
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP2K1 MUTATED        1      1      3      2      0      2      3
  MAP2K1 WILD-TYPE     59     49     46     38     63    123     96
D1273V8, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        3      0      1      8
  MAP2K1 WILD-TYPE    127     78     67    188
D1273V9, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAP2K1 MUTATED        0      0      0      1      7      1      0      0
  MAP2K1 WILD-TYPE     40     62     28     79     62     47     43     28
                  vv
clus               CLUS_9
  MAP2K1 MUTATED        3
  MAP2K1 WILD-TYPE     71
D1273V10, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        0      0      1      1
  MAP2K1 WILD-TYPE     33     31     26     18
D1273V11, multiclass
[1] "Remove cluster labels:" "MAP2K1 MUTATED"        
clus
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        0      0      2      0
  MAP2K1 WILD-TYPE     54     10     22     22
D1273V12, multiclass
[1] "Remove cluster labels:" "MAP2K1 MUTATED"        
clus
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" "MAP2K1 WILD-TYPE" 

Clustering(1274) Variable = RRAS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAS2 MUTATED        1      0      0      1
  RRAS2 WILD-TYPE     45     58     64     42
D1274V1, multiclass
[1] "Remove cluster labels:" "RRAS2 MUTATED"         
clus
  RRAS2 MUTATED RRAS2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AY-4071 
"RRAS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAS2 MUTATED        0      1      1
  RRAS2 WILD-TYPE     51     82     76
D1274V2, multiclass
[1] "Remove cluster labels:" "RRAS2 MUTATED"         
clus
  RRAS2 MUTATED RRAS2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AY-4071 
"RRAS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAS2 MUTATED        5      2      0      0
  RRAS2 WILD-TYPE    173    181    101     20
D1274V3, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAS2 MUTATED        1      2      1
  RRAS2 WILD-TYPE     86     78     99
D1274V4, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAS2 MUTATED        0      3      3
  RRAS2 WILD-TYPE     89    157    135
D1274V5, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAS2 MUTATED        3      3      0
  RRAS2 WILD-TYPE    179    130     72
D1274V6, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAS2 MUTATED        3      1      1      2
  RRAS2 WILD-TYPE    109     95     91    184
D1274V7, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RRAS2 MUTATED        4      0      1      0      1      1      0
  RRAS2 WILD-TYPE     56     50     48     40     62    124     99
D1274V8, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAS2 MUTATED        4      1      0      2
  RRAS2 WILD-TYPE    126     77     68    194
D1274V9, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RRAS2 MUTATED        1      1      2      2      1      0      0      0
  RRAS2 WILD-TYPE     39     61     26     78     68     48     43     28
                 vv
clus              CLUS_9
  RRAS2 MUTATED        0
  RRAS2 WILD-TYPE     74
D1274V10, multiclass
        clus
vv       RRAS2 MUTATED RRAS2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAS2 MUTATED        1      0      1      0
  RRAS2 WILD-TYPE     32     31     26     19
D1274V11, multiclass
[1] "Remove cluster labels:" "RRAS2 MUTATED"         
clus
  RRAS2 MUTATED RRAS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAS2 MUTATED        0      0      2      0
  RRAS2 WILD-TYPE     54     10     22     22
D1274V12, multiclass
[1] "Remove cluster labels:" "RRAS2 MUTATED"         
clus
  RRAS2 MUTATED RRAS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" "RRAS2 WILD-TYPE" 

Clustering(1275) Variable = TMLHE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMLHE MUTATED        0      0      1      1
  TMLHE WILD-TYPE     46     58     63     42
D1275V1, multiclass
[1] "Remove cluster labels:" "TMLHE MUTATED"         
clus
  TMLHE MUTATED TMLHE WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3984      TCGA-AA-3986 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AY-4071 
"TMLHE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMLHE MUTATED        0      1      1
  TMLHE WILD-TYPE     51     82     76
D1275V2, multiclass
[1] "Remove cluster labels:" "TMLHE MUTATED"         
clus
  TMLHE MUTATED TMLHE WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3984      TCGA-AA-3986 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AY-4071 
"TMLHE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMLHE MUTATED        2      1      1      0
  TMLHE WILD-TYPE    176    182    100     20
D1275V3, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMLHE MUTATED        1      1      1
  TMLHE WILD-TYPE     86     79     99
D1275V4, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMLHE MUTATED        2      3      0
  TMLHE WILD-TYPE     87    157    138
D1275V5, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             0             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TMLHE MUTATED        0      3      2
  TMLHE WILD-TYPE    182    130     70
D1275V6, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             0             182
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMLHE MUTATED        2      1      0      2
  TMLHE WILD-TYPE    110     95     92    184
D1275V7, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMLHE MUTATED        2      0      1      1      0      1      0
  TMLHE WILD-TYPE     58     50     48     39     63    124     99
D1275V8, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMLHE MUTATED        3      0      0      2
  TMLHE WILD-TYPE    127     78     68    194
D1275V9, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMLHE MUTATED        0      0      0      1      2      1      0      0
  TMLHE WILD-TYPE     40     62     28     79     67     47     43     28
                 vv
clus              CLUS_9
  TMLHE MUTATED        1
  TMLHE WILD-TYPE     73
D1275V10, multiclass
        clus
vv       TMLHE MUTATED TMLHE WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMLHE MUTATED        0      0      1      1
  TMLHE WILD-TYPE     33     31     26     18
D1275V11, multiclass
[1] "Remove cluster labels:" "TMLHE MUTATED"         
clus
  TMLHE MUTATED TMLHE WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMLHE MUTATED        0      0      1      1
  TMLHE WILD-TYPE     54     10     23     21
D1275V12, multiclass
[1] "Remove cluster labels:" "TMLHE MUTATED"         
clus
  TMLHE MUTATED TMLHE WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" "TMLHE WILD-TYPE" 

Clustering(1276) Variable = UGT1A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A1 MUTATED        2      1      0      0
  UGT1A1 WILD-TYPE     44     57     64     43
D1276V1, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A1 MUTATED        2      1      0
  UGT1A1 WILD-TYPE     49     82     77
D1276V2, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A1 MUTATED       10      0      1      0
  UGT1A1 WILD-TYPE    168    183    100     20
D1276V3, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A1 MUTATED        1      2      4
  UGT1A1 WILD-TYPE     86     78     96
D1276V4, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A1 MUTATED        2      3      3
  UGT1A1 WILD-TYPE     87    157    135
D1276V5, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A1 MUTATED        2      3      3
  UGT1A1 WILD-TYPE    180    130     69
D1276V6, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A1 MUTATED        3      2      3      3
  UGT1A1 WILD-TYPE    109     94     89    183
D1276V7, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UGT1A1 MUTATED        3      0      5      0      0      1      2
  UGT1A1 WILD-TYPE     57     50     44     40     63    124     97
D1276V8, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A1 MUTATED        5      1      1      4
  UGT1A1 WILD-TYPE    125     77     67    192
D1276V9, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UGT1A1 MUTATED        1      1      0      1      4      1      2      1
  UGT1A1 WILD-TYPE     39     61     28     79     65     47     41     27
                  vv
clus               CLUS_9
  UGT1A1 MUTATED        0
  UGT1A1 WILD-TYPE     74
D1276V10, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A1 MUTATED        0      0      1      3
  UGT1A1 WILD-TYPE     33     31     26     16
D1276V11, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A1 MUTATED        2      0      1      1
  UGT1A1 WILD-TYPE     52     10     23     21
D1276V12, multiclass
        clus
vv       UGT1A1 MUTATED UGT1A1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1277) Variable = NCR3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCR3 MUTATED        0      0      0      1
  NCR3 WILD-TYPE     46     58     64     42
D1277V1, multiclass
[1] "Remove cluster labels:" "NCR3 MUTATED"          
clus
  NCR3 MUTATED NCR3 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCR3 MUTATED        1      0      0
  NCR3 WILD-TYPE     50     83     77
D1277V2, multiclass
[1] "Remove cluster labels:" "NCR3 MUTATED"          
clus
  NCR3 MUTATED NCR3 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCR3 MUTATED        4      0      1      0
  NCR3 WILD-TYPE    174    183    100     20
D1277V3, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCR3 MUTATED        0      0      4
  NCR3 WILD-TYPE     87     80     96
D1277V4, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCR3 MUTATED        1      3      0
  NCR3 WILD-TYPE     88    157    138
D1277V5, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCR3 MUTATED        0      3      1
  NCR3 WILD-TYPE    182    130     71
D1277V6, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            0            182
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCR3 MUTATED        0      3      1      1
  NCR3 WILD-TYPE    112     93     91    185
D1277V7, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCR3 MUTATED        0      0      3      1      0      0      1
  NCR3 WILD-TYPE     60     50     46     39     63    125     98
D1277V8, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCR3 MUTATED        2      0      0      3
  NCR3 WILD-TYPE    128     78     68    193
D1277V9, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NCR3 MUTATED        0      0      0      0      5      0      0      0      0
  NCR3 WILD-TYPE     40     62     28     80     64     48     43     28     74
D1277V10, multiclass
        clus
vv       NCR3 MUTATED NCR3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCR3 MUTATED        0      0      0      1
  NCR3 WILD-TYPE     33     31     27     18
D1277V11, multiclass
[1] "Remove cluster labels:" "NCR3 MUTATED"          
clus
  NCR3 MUTATED NCR3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-G5-6641 
"NCR3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCR3 MUTATED        0      0      1      0
  NCR3 WILD-TYPE     54     10     23     22
D1277V12, multiclass
[1] "Remove cluster labels:" "NCR3 MUTATED"          
clus
  NCR3 MUTATED NCR3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" "NCR3 WILD-TYPE" 
    TCGA-G5-6641 
"NCR3 WILD-TYPE" 

Clustering(1278) Variable = AP1M1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1M1 MUTATED        0      0      1      0
  AP1M1 WILD-TYPE     46     58     63     43
D1278V1, multiclass
[1] "Remove cluster labels:" "AP1M1 MUTATED"         
clus
  AP1M1 MUTATED AP1M1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1M1 MUTATED        0      0      1
  AP1M1 WILD-TYPE     51     83     76
D1278V2, multiclass
[1] "Remove cluster labels:" "AP1M1 MUTATED"         
clus
  AP1M1 MUTATED AP1M1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"AP1M1 WILD-TYPE" "AP1M1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1M1 MUTATED        6      2      1      0
  AP1M1 WILD-TYPE    172    181    100     20
D1278V3, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1M1 MUTATED        2      1      4
  AP1M1 WILD-TYPE     85     79     96
D1278V4, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1M1 MUTATED        1      4      3
  AP1M1 WILD-TYPE     88    156    135
D1278V5, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1M1 MUTATED        5      2      1
  AP1M1 WILD-TYPE    177    131     71
D1278V6, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1M1 MUTATED        1      4      2      2
  AP1M1 WILD-TYPE    111     92     90    184
D1278V7, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP1M1 MUTATED        2      1      4      0      0      1      1
  AP1M1 WILD-TYPE     58     49     45     40     63    124     98
D1278V8, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1M1 MUTATED        6      1      0      2
  AP1M1 WILD-TYPE    124     77     68    194
D1278V9, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AP1M1 MUTATED        2      2      1      0      2      2      0      0
  AP1M1 WILD-TYPE     38     60     27     80     67     46     43     28
                 vv
clus              CLUS_9
  AP1M1 MUTATED        0
  AP1M1 WILD-TYPE     74
D1278V10, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1M1 MUTATED        0      0      0      3
  AP1M1 WILD-TYPE     33     31     27     16
D1278V11, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1M1 MUTATED        2      0      0      1
  AP1M1 WILD-TYPE     52     10     24     21
D1278V12, multiclass
        clus
vv       AP1M1 MUTATED AP1M1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1279) Variable = FBXL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL4 MUTATED        0      0      0      1
  FBXL4 WILD-TYPE     46     58     64     42
D1279V1, multiclass
[1] "Remove cluster labels:" "FBXL4 MUTATED"         
clus
  FBXL4 MUTATED FBXL4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXL4 MUTATED        0      0      1
  FBXL4 WILD-TYPE     51     83     76
D1279V2, multiclass
[1] "Remove cluster labels:" "FBXL4 MUTATED"         
clus
  FBXL4 MUTATED FBXL4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL4 MUTATED        4      3      1      0
  FBXL4 WILD-TYPE    174    180    100     20
D1279V3, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXL4 MUTATED        2      1      3
  FBXL4 WILD-TYPE     85     79     97
D1279V4, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXL4 MUTATED        1      4      3
  FBXL4 WILD-TYPE     88    156    135
D1279V5, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXL4 MUTATED        2      6      0
  FBXL4 WILD-TYPE    180    127     72
D1279V6, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL4 MUTATED        2      3      1      2
  FBXL4 WILD-TYPE    110     93     91    184
D1279V7, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXL4 MUTATED        4      2      0      1      0      0      1
  FBXL4 WILD-TYPE     56     48     49     39     63    125     98
D1279V8, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL4 MUTATED        2      0      2      4
  FBXL4 WILD-TYPE    128     78     66    192
D1279V9, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXL4 MUTATED        0      0      0      2      2      1      2      0
  FBXL4 WILD-TYPE     40     62     28     78     67     47     41     28
                 vv
clus              CLUS_9
  FBXL4 MUTATED        1
  FBXL4 WILD-TYPE     73
D1279V10, multiclass
        clus
vv       FBXL4 MUTATED FBXL4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL4 MUTATED        0      0      1      1
  FBXL4 WILD-TYPE     33     31     26     18
D1279V11, multiclass
[1] "Remove cluster labels:" "FBXL4 MUTATED"         
clus
  FBXL4 MUTATED FBXL4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6641 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL4 MUTATED        0      0      2      0
  FBXL4 WILD-TYPE     54     10     22     22
D1279V12, multiclass
[1] "Remove cluster labels:" "FBXL4 MUTATED"         
clus
  FBXL4 MUTATED FBXL4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6641 
"FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" "FBXL4 WILD-TYPE" 

Clustering(1280) Variable = KRT222 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        0      0      0      3
  KRT222 WILD-TYPE     46     58     64     40
D1280V1, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        1      1      1
  KRT222 WILD-TYPE     50     82     76
D1280V2, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        6      0      0      1
  KRT222 WILD-TYPE    172    183    101     19
D1280V3, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        2      0      3
  KRT222 WILD-TYPE     85     80     97
D1280V4, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        1      2      5
  KRT222 WILD-TYPE     88    158    133
D1280V5, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        3      5      0
  KRT222 WILD-TYPE    179    128     72
D1280V6, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        2      2      1      3
  KRT222 WILD-TYPE    110     94     91    183
D1280V7, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT222 MUTATED        2      2      1      0      1      0      2
  KRT222 WILD-TYPE     58     48     48     40     62    125     97
D1280V8, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        3      1      0      3
  KRT222 WILD-TYPE    127     77     68    193
D1280V9, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRT222 MUTATED        0      1      1      1      1      1      1      0
  KRT222 WILD-TYPE     40     61     27     79     68     47     42     28
                  vv
clus               CLUS_9
  KRT222 MUTATED        1
  KRT222 WILD-TYPE     73
D1280V10, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        2      0      1      0
  KRT222 WILD-TYPE     31     31     26     19
D1280V11, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        1      0      0      2
  KRT222 WILD-TYPE     53     10     24     20
D1280V12, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1281) Variable = CDC42BPA MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPA MUTATED        5      1      0      4
  CDC42BPA WILD-TYPE     41     57     64     39
D1281V1, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42BPA MUTATED        8      1      1
  CDC42BPA WILD-TYPE     43     82     76
D1281V2, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                8                 43
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPA MUTATED       22      4      4      0
  CDC42BPA WILD-TYPE    156    179     97     20
D1281V3, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1               22                156
  CLUS_2                4                179
  CLUS_3                4                 97
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42BPA MUTATED        8      4      8
  CDC42BPA WILD-TYPE     79     76     92
D1281V4, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                4                 76
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42BPA MUTATED        5      7     14
  CDC42BPA WILD-TYPE     84    153    124
D1281V5, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                5                 84
  CLUS_2                7                153
  CLUS_3               14                124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42BPA MUTATED       12      7      7
  CDC42BPA WILD-TYPE    170    126     65
D1281V6, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1               12                170
  CLUS_2                7                126
  CLUS_3                7                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPA MUTATED        6      9      6      9
  CDC42BPA WILD-TYPE    106     87     86    177
D1281V7, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                6                106
  CLUS_2                9                 87
  CLUS_3                6                 86
  CLUS_4                9                177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC42BPA MUTATED        3      5      8      2      3      1      8
  CDC42BPA WILD-TYPE     57     45     41     38     60    124     91
D1281V8, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                5                 45
  CLUS_3                8                 41
  CLUS_4                2                 38
  CLUS_5                3                 60
  CLUS_6                1                124
  CLUS_7                8                 91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPA MUTATED       10      4      3     12
  CDC42BPA WILD-TYPE    120     74     65    184
D1281V9, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1               10                120
  CLUS_2                4                 74
  CLUS_3                3                 65
  CLUS_4               12                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDC42BPA MUTATED        5      5      1      0     12      2      3      0
  CDC42BPA WILD-TYPE     35     57     27     80     57     46     40     28
                    vv
clus                 CLUS_9
  CDC42BPA MUTATED        1
  CDC42BPA WILD-TYPE     73
D1281V10, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                5                 57
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5               12                 57
  CLUS_6                2                 46
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPA MUTATED        1      1      0      2
  CDC42BPA WILD-TYPE     32     30     27     17
D1281V11, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42BPA MUTATED        3      0      1      0
  CDC42BPA WILD-TYPE     51     10     23     22
D1281V12, multiclass
        clus
vv       CDC42BPA MUTATED CDC42BPA WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1282) Variable = USP44 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP44 MUTATED        5      0      0      4
  USP44 WILD-TYPE     41     58     64     39
D1282V1, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP44 MUTATED        6      2      1
  USP44 WILD-TYPE     45     81     76
D1282V2, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP44 MUTATED       12      2      3      0
  USP44 WILD-TYPE    166    181     98     20
D1282V3, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP44 MUTATED        2      1      4
  USP44 WILD-TYPE     85     79     96
D1282V4, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP44 MUTATED        3      5      6
  USP44 WILD-TYPE     86    155    132
D1282V5, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP44 MUTATED        5      6      3
  USP44 WILD-TYPE    177    127     69
D1282V6, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP44 MUTATED        2      4      1     10
  USP44 WILD-TYPE    110     92     91    176
D1282V7, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP44 MUTATED        2      0      3      1      2      1      8
  USP44 WILD-TYPE     58     50     46     39     61    124     91
D1282V8, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP44 MUTATED        4      1      1      9
  USP44 WILD-TYPE    126     77     67    187
D1282V9, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP44 MUTATED        2      0      1      3      8      0      0      1
  USP44 WILD-TYPE     38     62     27     77     61     48     43     27
                 vv
clus              CLUS_9
  USP44 MUTATED        0
  USP44 WILD-TYPE     74
D1282V10, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP44 MUTATED        0      1      1      2
  USP44 WILD-TYPE     33     30     26     17
D1282V11, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP44 MUTATED        1      0      3      0
  USP44 WILD-TYPE     53     10     21     22
D1282V12, multiclass
        clus
vv       USP44 MUTATED USP44 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1283) Variable = PLCG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG2 MUTATED        2      0      2      3
  PLCG2 WILD-TYPE     44     58     62     40
D1283V1, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG2 MUTATED        3      2      2
  PLCG2 WILD-TYPE     48     81     75
D1283V2, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG2 MUTATED       16      4      1      0
  PLCG2 WILD-TYPE    162    179    100     20
D1283V3, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG2 MUTATED        5      1      7
  PLCG2 WILD-TYPE     82     79     93
D1283V4, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG2 MUTATED        4      6      9
  PLCG2 WILD-TYPE     85    154    129
D1283V5, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             6             154
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG2 MUTATED        8      8      3
  PLCG2 WILD-TYPE    174    125     69
D1283V6, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG2 MUTATED        2      7      4      8
  PLCG2 WILD-TYPE    110     89     88    178
D1283V7, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLCG2 MUTATED        2      2      6      0      3      2      6
  PLCG2 WILD-TYPE     58     48     43     40     60    123     93
D1283V8, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG2 MUTATED        4      3      1     12
  PLCG2 WILD-TYPE    126     75     67    184
D1283V9, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLCG2 MUTATED        0      3      1      3      7      0      2      1
  PLCG2 WILD-TYPE     40     59     27     77     62     48     41     27
                 vv
clus              CLUS_9
  PLCG2 MUTATED        3
  PLCG2 WILD-TYPE     71
D1283V10, multiclass
        clus
vv       PLCG2 MUTATED PLCG2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG2 MUTATED        0      0      1      1
  PLCG2 WILD-TYPE     33     31     26     18
D1283V11, multiclass
[1] "Remove cluster labels:" "PLCG2 MUTATED"         
clus
  PLCG2 MUTATED PLCG2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6141      TCGA-A6-6142 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-EI-6506 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG2 MUTATED        1      0      1      0
  PLCG2 WILD-TYPE     53     10     23     22
D1283V12, multiclass
[1] "Remove cluster labels:" "PLCG2 MUTATED"         
clus
  PLCG2 MUTATED PLCG2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6141      TCGA-A6-6142 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-EI-6506 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" "PLCG2 WILD-TYPE" 

Clustering(1284) Variable = RDBP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        1      0      0      1
  RDBP WILD-TYPE     45     58     64     42
D1284V1, multiclass
[1] "Remove cluster labels:" "RDBP MUTATED"          
clus
  RDBP MUTATED RDBP WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AY-4071 
"RDBP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        1      0      1
  RDBP WILD-TYPE     50     83     76
D1284V2, multiclass
[1] "Remove cluster labels:" "RDBP MUTATED"          
clus
  RDBP MUTATED RDBP WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AY-4071 
"RDBP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        7      0      0      0
  RDBP WILD-TYPE    171    183    101     20
D1284V3, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            7            171
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        1      0      5
  RDBP WILD-TYPE     86     80     95
D1284V4, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        0      2      2
  RDBP WILD-TYPE     89    158    136
D1284V5, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        3      0      1
  RDBP WILD-TYPE    179    133     71
D1284V6, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        0      4      1      2
  RDBP WILD-TYPE    112     92     91    184
D1284V7, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RDBP MUTATED        0      1      4      0      0      0      2
  RDBP WILD-TYPE     60     49     45     40     63    125     97
D1284V8, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        4      0      0      3
  RDBP WILD-TYPE    126     78     68    193
D1284V9, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RDBP MUTATED        1      1      1      1      3      0      0      0      0
  RDBP WILD-TYPE     39     61     27     79     66     48     43     28     74
D1284V10, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        0      0      0      1
  RDBP WILD-TYPE     33     31     27     18
D1284V11, multiclass
[1] "Remove cluster labels:" "RDBP MUTATED"          
clus
  RDBP MUTATED RDBP WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-G5-6641 
"RDBP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        0      0      1      0
  RDBP WILD-TYPE     54     10     23     22
D1284V12, multiclass
[1] "Remove cluster labels:" "RDBP MUTATED"          
clus
  RDBP MUTATED RDBP WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" "RDBP WILD-TYPE" 
    TCGA-G5-6641 
"RDBP WILD-TYPE" 

Clustering(1285) Variable = RAPGEF2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF2 MUTATED        3      0      0      5
  RAPGEF2 WILD-TYPE     43     58     64     38
D1285V1, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF2 MUTATED        4      2      2
  RAPGEF2 WILD-TYPE     47     81     75
D1285V2, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF2 MUTATED       23      0      0      0
  RAPGEF2 WILD-TYPE    155    183    101     20
D1285V3, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1              23               155
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF2 MUTATED        5      0     10
  RAPGEF2 WILD-TYPE     82     80     90
D1285V4, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF2 MUTATED        5      3     10
  RAPGEF2 WILD-TYPE     84    157    128
D1285V5, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               3               157
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF2 MUTATED        9      6      3
  RAPGEF2 WILD-TYPE    173    127     69
D1285V6, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               6               127
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF2 MUTATED        1      7      8      8
  RAPGEF2 WILD-TYPE    111     89     84    178
D1285V7, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               7                89
  CLUS_3               8                84
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAPGEF2 MUTATED        2      3     11      0      1      1      6
  RAPGEF2 WILD-TYPE     58     47     38     40     62    124     93
D1285V8, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3              11                38
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF2 MUTATED        8      5      0     11
  RAPGEF2 WILD-TYPE    122     73     68    185
D1285V9, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAPGEF2 MUTATED        3      6      3      2      6      0      1      2
  RAPGEF2 WILD-TYPE     37     56     25     78     63     48     42     26
                   vv
clus                CLUS_9
  RAPGEF2 MUTATED        1
  RAPGEF2 WILD-TYPE     73
D1285V10, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               6                56
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               2                26
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF2 MUTATED        3      0      1      3
  RAPGEF2 WILD-TYPE     30     31     26     16
D1285V11, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF2 MUTATED        5      0      1      1
  RAPGEF2 WILD-TYPE     49     10     23     21
D1285V12, multiclass
        clus
vv       RAPGEF2 MUTATED RAPGEF2 WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1286) Variable = GDA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDA MUTATED        0      0      0      0
  GDA WILD-TYPE     46     58     64     43
D1286V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GDA MUTATED        0      0      0
  GDA WILD-TYPE     51     83     77
D1286V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDA MUTATED        1      4      1      1
  GDA WILD-TYPE    177    179    100     19
D1286V3, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           1           177
  CLUS_2           4           179
  CLUS_3           1           100
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GDA MUTATED        3      3      1
  GDA WILD-TYPE     84     77     99
D1286V4, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           3            84
  CLUS_2           3            77
  CLUS_3           1            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GDA MUTATED        1      3      3
  GDA WILD-TYPE     88    157    135
D1286V5, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           1            88
  CLUS_2           3           157
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GDA MUTATED        3      2      2
  GDA WILD-TYPE    179    131     70
D1286V6, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           3           179
  CLUS_2           2           131
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDA MUTATED        3      3      1      0
  GDA WILD-TYPE    109     93     91    186
D1286V7, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           3           109
  CLUS_2           3            93
  CLUS_3           1            91
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GDA MUTATED        0      2      1      2      2      0      0
  GDA WILD-TYPE     60     48     48     38     61    125     99
D1286V8, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           0            60
  CLUS_2           2            48
  CLUS_3           1            48
  CLUS_4           2            38
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDA MUTATED        4      1      2      0
  GDA WILD-TYPE    126     77     66    196
D1286V9, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           4           126
  CLUS_2           1            77
  CLUS_3           2            66
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GDA MUTATED        2      1      0      0      1      1      2      0      0
  GDA WILD-TYPE     38     61     28     80     68     47     41     28     74
D1286V10, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           2            38
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           1            47
  CLUS_7           2            41
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDA MUTATED        1      1      1      1
  GDA WILD-TYPE     32     30     26     18
D1286V11, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            30
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDA MUTATED        1      1      1      1
  GDA WILD-TYPE     53      9     23     21
D1286V12, multiclass
        clus
vv       GDA MUTATED GDA WILD-TYPE
  CLUS_1           1            53
  CLUS_2           1             9
  CLUS_3           1            23
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1287) Variable = PEBP4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEBP4 MUTATED        0      0      0      0
  PEBP4 WILD-TYPE     46     58     64     43
D1287V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PEBP4 MUTATED        0      0      0
  PEBP4 WILD-TYPE     51     83     77
D1287V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEBP4 MUTATED        5      0      2      0
  PEBP4 WILD-TYPE    173    183     99     20
D1287V3, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PEBP4 MUTATED        1      1      5
  PEBP4 WILD-TYPE     86     79     95
D1287V4, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PEBP4 MUTATED        0      3      3
  PEBP4 WILD-TYPE     89    157    135
D1287V5, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PEBP4 MUTATED        3      3      0
  PEBP4 WILD-TYPE    179    130     72
D1287V6, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEBP4 MUTATED        1      3      3      0
  PEBP4 WILD-TYPE    111     93     89    186
D1287V7, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PEBP4 MUTATED        1      2      4      0      0      0      0
  PEBP4 WILD-TYPE     59     48     45     40     63    125     99
D1287V8, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEBP4 MUTATED        3      0      2      2
  PEBP4 WILD-TYPE    127     78     66    194
D1287V9, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PEBP4 MUTATED        0      1      1      1      3      0      1      0
  PEBP4 WILD-TYPE     40     61     27     79     66     48     42     28
                 vv
clus              CLUS_9
  PEBP4 MUTATED        0
  PEBP4 WILD-TYPE     74
D1287V10, multiclass
        clus
vv       PEBP4 MUTATED PEBP4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEBP4 MUTATED        0      0      1      0
  PEBP4 WILD-TYPE     33     31     26     19
D1287V11, multiclass
[1] "Remove cluster labels:" "PEBP4 MUTATED"         
clus
  PEBP4 MUTATED PEBP4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-G5-6641 
"PEBP4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEBP4 MUTATED        0      0      1      0
  PEBP4 WILD-TYPE     54     10     23     22
D1287V12, multiclass
[1] "Remove cluster labels:" "PEBP4 MUTATED"         
clus
  PEBP4 MUTATED PEBP4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" "PEBP4 WILD-TYPE" 
     TCGA-G5-6641 
"PEBP4 WILD-TYPE" 

Clustering(1288) Variable = CYP2A6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2A6 MUTATED        1      1      0      2
  CYP2A6 WILD-TYPE     45     57     64     41
D1288V1, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2A6 MUTATED        1      2      1
  CYP2A6 WILD-TYPE     50     81     76
D1288V2, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2A6 MUTATED        6      4      2      0
  CYP2A6 WILD-TYPE    172    179     99     20
D1288V3, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2A6 MUTATED        1      5      2
  CYP2A6 WILD-TYPE     86     75     98
D1288V4, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              5               75
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2A6 MUTATED        2      6      4
  CYP2A6 WILD-TYPE     87    154    134
D1288V5, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2A6 MUTATED        6      6      0
  CYP2A6 WILD-TYPE    176    127     72
D1288V6, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2A6 MUTATED        5      1      3      3
  CYP2A6 WILD-TYPE    107     95     89    183
D1288V7, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP2A6 MUTATED        5      0      3      0      1      1      2
  CYP2A6 WILD-TYPE     55     50     46     40     62    124     97
D1288V8, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2A6 MUTATED        5      2      1      4
  CYP2A6 WILD-TYPE    125     76     67    192
D1288V9, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP2A6 MUTATED        0      2      1      1      3      3      0      1
  CYP2A6 WILD-TYPE     40     60     27     79     66     45     43     27
                  vv
clus               CLUS_9
  CYP2A6 MUTATED        1
  CYP2A6 WILD-TYPE     73
D1288V10, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              3               45
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2A6 MUTATED        1      1      0      2
  CYP2A6 WILD-TYPE     32     30     27     17
D1288V11, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2A6 MUTATED        0      1      1      2
  CYP2A6 WILD-TYPE     54      9     23     20
D1288V12, multiclass
        clus
vv       CYP2A6 MUTATED CYP2A6 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1289) Variable = DEK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        0      0      0      1
  DEK WILD-TYPE     46     58     64     42
D1289V1, multiclass
[1] "Remove cluster labels:" "DEK MUTATED"           
clus
  DEK MUTATED DEK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        1      0      0
  DEK WILD-TYPE     50     83     77
D1289V2, multiclass
[1] "Remove cluster labels:" "DEK MUTATED"           
clus
  DEK MUTATED DEK WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" "DEK WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        4      2      0      0
  DEK WILD-TYPE    174    181    101     20
D1289V3, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4           174
  CLUS_2           2           181
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        1      2      2
  DEK WILD-TYPE     86     78     98
D1289V4, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            86
  CLUS_2           2            78
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        0      1      5
  DEK WILD-TYPE     89    159    133
D1289V5, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            89
  CLUS_2           1           159
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        5      1      0
  DEK WILD-TYPE    177    132     72
D1289V6, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           5           177
  CLUS_2           1           132
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        2      2      1      1
  DEK WILD-TYPE    110     94     91    185
D1289V7, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           2           110
  CLUS_2           2            94
  CLUS_3           1            91
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEK MUTATED        1      1      2      0      1      0      1
  DEK WILD-TYPE     59     49     47     40     62    125     98
D1289V8, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            59
  CLUS_2           1            49
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        3      1      1      0
  DEK WILD-TYPE    127     77     67    196
D1289V9, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           3           127
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEK MUTATED        1      1      0      1      0      0      2      0      0
  DEK WILD-TYPE     39     61     28     79     69     48     41     28     74
D1289V10, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           1            79
  CLUS_5           0            69
  CLUS_6           0            48
  CLUS_7           2            41
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        0      0      0      0
  DEK WILD-TYPE     33     31     27     19
D1289V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        0      0      0      0
  DEK WILD-TYPE     54     10     24     22
D1289V12, multiclass

Clustering(1290) Variable = HAUS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS1 MUTATED        1      0      0      1
  HAUS1 WILD-TYPE     45     58     64     42
D1290V1, multiclass
[1] "Remove cluster labels:" "HAUS1 MUTATED"         
clus
  HAUS1 MUTATED HAUS1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AY-4071 
"HAUS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS1 MUTATED        2      0      0
  HAUS1 WILD-TYPE     49     83     77
D1290V2, multiclass
[1] "Remove cluster labels:" "HAUS1 MUTATED"         
clus
  HAUS1 MUTATED HAUS1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AY-4071 
"HAUS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS1 MUTATED        5      0      1      0
  HAUS1 WILD-TYPE    173    183    100     20
D1290V3, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS1 MUTATED        2      2      0
  HAUS1 WILD-TYPE     85     78    100
D1290V4, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS1 MUTATED        2      1      3
  HAUS1 WILD-TYPE     87    159    135
D1290V5, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS1 MUTATED        3      0      3
  HAUS1 WILD-TYPE    179    133     69
D1290V6, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS1 MUTATED        2      1      1      2
  HAUS1 WILD-TYPE    110     95     91    184
D1290V7, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HAUS1 MUTATED        2      1      0      0      1      0      2
  HAUS1 WILD-TYPE     58     49     49     40     62    125     97
D1290V8, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS1 MUTATED        2      2      0      1
  HAUS1 WILD-TYPE    128     76     68    195
D1290V9, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HAUS1 MUTATED        1      0      0      2      1      1      0      0
  HAUS1 WILD-TYPE     39     62     28     78     68     47     43     28
                 vv
clus              CLUS_9
  HAUS1 MUTATED        0
  HAUS1 WILD-TYPE     74
D1290V10, multiclass
        clus
vv       HAUS1 MUTATED HAUS1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS1 MUTATED        1      1      0      0
  HAUS1 WILD-TYPE     32     30     27     19
D1290V11, multiclass
[1] "Remove cluster labels:" "HAUS1 MUTATED"         
clus
  HAUS1 MUTATED HAUS1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6142 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4616      TCGA-AZ-5403 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS1 MUTATED        2      0      0      0
  HAUS1 WILD-TYPE     52     10     24     22
D1290V12, multiclass
[1] "Remove cluster labels:" "HAUS1 MUTATED"         
clus
  HAUS1 MUTATED HAUS1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6142 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4616      TCGA-AZ-5403 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" "HAUS1 WILD-TYPE" 

Clustering(1291) Variable = DBF4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBF4B MUTATED        2      0      0      1
  DBF4B WILD-TYPE     44     58     64     42
D1291V1, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DBF4B MUTATED        1      2      0
  DBF4B WILD-TYPE     50     81     77
D1291V2, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBF4B MUTATED        6      1      0      0
  DBF4B WILD-TYPE    172    182    101     20
D1291V3, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DBF4B MUTATED        2      1      1
  DBF4B WILD-TYPE     85     79     99
D1291V4, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DBF4B MUTATED        2      1      3
  DBF4B WILD-TYPE     87    159    135
D1291V5, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DBF4B MUTATED        3      2      1
  DBF4B WILD-TYPE    179    131     71
D1291V6, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBF4B MUTATED        1      1      2      3
  DBF4B WILD-TYPE    111     95     90    183
D1291V7, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DBF4B MUTATED        1      0      2      0      1      1      2
  DBF4B WILD-TYPE     59     50     47     40     62    124     97
D1291V8, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBF4B MUTATED        1      3      0      3
  DBF4B WILD-TYPE    129     75     68    193
D1291V9, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DBF4B MUTATED        0      3      1      1      2      0      0      0
  DBF4B WILD-TYPE     40     59     27     79     67     48     43     28
                 vv
clus              CLUS_9
  DBF4B MUTATED        0
  DBF4B WILD-TYPE     74
D1291V10, multiclass
        clus
vv       DBF4B MUTATED DBF4B WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBF4B MUTATED        0      0      0      0
  DBF4B WILD-TYPE     33     31     27     19
D1291V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DBF4B MUTATED        0      0      0      0
  DBF4B WILD-TYPE     54     10     24     22
D1291V12, multiclass

Clustering(1292) Variable = PLA2G15 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        1      0      0      1
  PLA2G15 WILD-TYPE     45     58     64     42
D1292V1, multiclass
[1] "Remove cluster labels:" "PLA2G15 MUTATED"       
clus
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A032        TCGA-AY-4070 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AY-4071 
"PLA2G15 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        2      0      0
  PLA2G15 WILD-TYPE     49     83     77
D1292V2, multiclass
[1] "Remove cluster labels:" "PLA2G15 MUTATED"       
clus
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A032        TCGA-AY-4070 
"PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" "PLA2G15 WILD-TYPE" 
       TCGA-AY-4071 
"PLA2G15 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        3      1      1      1
  PLA2G15 WILD-TYPE    175    182    100     19
D1292V3, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        3      1      0
  PLA2G15 WILD-TYPE     84     79    100
D1292V4, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        0      2      4
  PLA2G15 WILD-TYPE     89    158    134
D1292V5, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        4      1      1
  PLA2G15 WILD-TYPE    178    132     71
D1292V6, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        1      1      2      2
  PLA2G15 WILD-TYPE    111     95     90    184
D1292V7, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLA2G15 MUTATED        0      1      2      0      1      0      2
  PLA2G15 WILD-TYPE     60     49     47     40     62    125     97
D1292V8, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        1      2      2      1
  PLA2G15 WILD-TYPE    129     76     66    195
D1292V9, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLA2G15 MUTATED        0      2      0      0      2      0      1      0
  PLA2G15 WILD-TYPE     40     60     28     80     67     48     42     28
                   vv
clus                CLUS_9
  PLA2G15 MUTATED        1
  PLA2G15 WILD-TYPE     73
D1292V10, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        1      1      0      1
  PLA2G15 WILD-TYPE     32     30     27     18
D1292V11, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        2      0      0      1
  PLA2G15 WILD-TYPE     52     10     24     21
D1292V12, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1293) Variable = STAT5B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        3      0      0      3
  STAT5B WILD-TYPE     43     58     64     40
D1293V1, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        4      1      1
  STAT5B WILD-TYPE     47     82     76
D1293V2, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED       10      1      0      1
  STAT5B WILD-TYPE    168    182    101     19
D1293V3, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        3      1      4
  STAT5B WILD-TYPE     84     79     96
D1293V4, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        1      3      9
  STAT5B WILD-TYPE     88    157    129
D1293V5, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        9      3      1
  STAT5B WILD-TYPE    173    130     71
D1293V6, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              9              173
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        1      2      4      6
  STAT5B WILD-TYPE    111     94     88    180
D1293V7, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAT5B MUTATED        1      1      4      0      2      0      5
  STAT5B WILD-TYPE     59     49     45     40     61    125     94
D1293V8, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        3      2      0      7
  STAT5B WILD-TYPE    127     76     68    189
D1293V9, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STAT5B MUTATED        1      3      1      2      4      0      1      0
  STAT5B WILD-TYPE     39     59     27     78     65     48     42     28
                  vv
clus               CLUS_9
  STAT5B MUTATED        0
  STAT5B WILD-TYPE     74
D1293V10, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        1      1      0      2
  STAT5B WILD-TYPE     32     30     27     17
D1293V11, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        2      1      1      0
  STAT5B WILD-TYPE     52      9     23     22
D1293V12, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1294) Variable = NCOA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA5 MUTATED        3      0      0      1
  NCOA5 WILD-TYPE     43     58     64     42
D1294V1, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA5 MUTATED        4      0      0
  NCOA5 WILD-TYPE     47     83     77
D1294V2, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA5 MUTATED       11      0      2      0
  NCOA5 WILD-TYPE    167    183     99     20
D1294V3, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA5 MUTATED        4      0      4
  NCOA5 WILD-TYPE     83     80     96
D1294V4, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA5 MUTATED        1      4      6
  NCOA5 WILD-TYPE     88    156    132
D1294V5, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA5 MUTATED        6      2      3
  NCOA5 WILD-TYPE    176    131     69
D1294V6, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA5 MUTATED        0      6      2      5
  NCOA5 WILD-TYPE    112     90     90    181
D1294V7, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCOA5 MUTATED        0      3      4      1      0      0      5
  NCOA5 WILD-TYPE     60     47     45     39     63    125     94
D1294V8, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA5 MUTATED        6      1      0      5
  NCOA5 WILD-TYPE    124     77     68    191
D1294V9, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NCOA5 MUTATED        1      1      2      0      5      1      0      1
  NCOA5 WILD-TYPE     39     61     26     80     64     47     43     27
                 vv
clus              CLUS_9
  NCOA5 MUTATED        1
  NCOA5 WILD-TYPE     73
D1294V10, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA5 MUTATED        1      0      1      2
  NCOA5 WILD-TYPE     32     31     26     17
D1294V11, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA5 MUTATED        1      0      3      0
  NCOA5 WILD-TYPE     53     10     21     22
D1294V12, multiclass
        clus
vv       NCOA5 MUTATED NCOA5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1295) Variable = MR1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MR1 MUTATED        1      0      0      1
  MR1 WILD-TYPE     45     58     64     42
D1295V1, multiclass
[1] "Remove cluster labels:" "MR1 MUTATED"           
clus
  MR1 MUTATED MR1 WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MR1 MUTATED        1      0      1
  MR1 WILD-TYPE     50     83     76
D1295V2, multiclass
[1] "Remove cluster labels:" "MR1 MUTATED"           
clus
  MR1 MUTATED MR1 WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" "MR1 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MR1 MUTATED        5      2      0      0
  MR1 WILD-TYPE    173    181    101     20
D1295V3, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           5           173
  CLUS_2           2           181
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MR1 MUTATED        3      2      0
  MR1 WILD-TYPE     84     78    100
D1295V4, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           3            84
  CLUS_2           2            78
  CLUS_3           0           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MR1 MUTATED        1      3      2
  MR1 WILD-TYPE     88    157    136
D1295V5, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           1            88
  CLUS_2           3           157
  CLUS_3           2           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MR1 MUTATED        3      3      0
  MR1 WILD-TYPE    179    130     72
D1295V6, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           3           179
  CLUS_2           3           130
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MR1 MUTATED        1      0      3      3
  MR1 WILD-TYPE    111     96     89    183
D1295V7, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           1           111
  CLUS_2           0            96
  CLUS_3           3            89
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MR1 MUTATED        2      0      1      0      2      0      2
  MR1 WILD-TYPE     58     50     48     40     61    125     97
D1295V8, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           2            58
  CLUS_2           0            50
  CLUS_3           1            48
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MR1 MUTATED        0      3      1      3
  MR1 WILD-TYPE    130     75     67    193
D1295V9, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           0           130
  CLUS_2           3            75
  CLUS_3           1            67
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MR1 MUTATED        1      2      0      0      2      0      1      0      1
  MR1 WILD-TYPE     39     60     28     80     67     48     42     28     73
D1295V10, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MR1 MUTATED        1      0      1      1
  MR1 WILD-TYPE     32     31     26     18
D1295V11, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           1            32
  CLUS_2           0            31
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MR1 MUTATED        2      0      1      0
  MR1 WILD-TYPE     52     10     23     22
D1295V12, multiclass
        clus
vv       MR1 MUTATED MR1 WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1296) Variable = FAM155B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        1      0      1      0
  FAM155B WILD-TYPE     45     58     63     43
D1296V1, multiclass
[1] "Remove cluster labels:" "FAM155B MUTATED"       
clus
  FAM155B MUTATED FAM155B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3821 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AY-4071 
"FAM155B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        1      0      1
  FAM155B WILD-TYPE     50     83     76
D1296V2, multiclass
[1] "Remove cluster labels:" "FAM155B MUTATED"       
clus
  FAM155B MUTATED FAM155B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3821 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AY-4071 
"FAM155B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        3      2      2      0
  FAM155B WILD-TYPE    175    181     99     20
D1296V3, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               3               175
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        4      0      2
  FAM155B WILD-TYPE     83     80     98
D1296V4, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        2      2      2
  FAM155B WILD-TYPE     87    158    136
D1296V5, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        2      3      1
  FAM155B WILD-TYPE    180    130     71
D1296V6, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2               180
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        1      4      1      2
  FAM155B WILD-TYPE    111     92     91    184
D1296V7, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM155B MUTATED        0      2      2      1      1      1      1
  FAM155B WILD-TYPE     60     48     47     39     62    124     98
D1296V8, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        4      1      0      3
  FAM155B WILD-TYPE    126     77     68    193
D1296V9, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM155B MUTATED        0      1      0      1      3      1      1      0
  FAM155B WILD-TYPE     40     61     28     79     66     47     42     28
                   vv
clus                CLUS_9
  FAM155B MUTATED        1
  FAM155B WILD-TYPE     73
D1296V10, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        0      1      0      1
  FAM155B WILD-TYPE     33     30     27     18
D1296V11, multiclass
[1] "Remove cluster labels:" "FAM155B MUTATED"       
clus
  FAM155B MUTATED FAM155B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        1      0      1      0
  FAM155B WILD-TYPE     53     10     23     22
D1296V12, multiclass
[1] "Remove cluster labels:" "FAM155B MUTATED"       
clus
  FAM155B MUTATED FAM155B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" "FAM155B WILD-TYPE" 

Clustering(1297) Variable = MCF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2 MUTATED        3      3      2      5
  MCF2 WILD-TYPE     43     55     62     38
D1297V1, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            3             55
  CLUS_3            2             62
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCF2 MUTATED        6      6      1
  MCF2 WILD-TYPE     45     77     76
D1297V2, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            6             77
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2 MUTATED       20      5      6      1
  MCF2 WILD-TYPE    158    178     95     19
D1297V3, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1           20            158
  CLUS_2            5            178
  CLUS_3            6             95
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCF2 MUTATED        6      2     11
  MCF2 WILD-TYPE     81     78     89
D1297V4, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3           11             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCF2 MUTATED        3     10     12
  MCF2 WILD-TYPE     86    150    126
D1297V5, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           10            150
  CLUS_3           12            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCF2 MUTATED       12      8      5
  MCF2 WILD-TYPE    170    125     67
D1297V6, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            8            125
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2 MUTATED        3     11      5     13
  MCF2 WILD-TYPE    109     85     87    173
D1297V7, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2           11             85
  CLUS_3            5             87
  CLUS_4           13            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MCF2 MUTATED        1      5      8      2      2      5      9
  MCF2 WILD-TYPE     59     45     41     38     61    120     90
D1297V8, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            5             45
  CLUS_3            8             41
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            5            120
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2 MUTATED       10      4      3     14
  MCF2 WILD-TYPE    120     74     65    182
D1297V9, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1           10            120
  CLUS_2            4             74
  CLUS_3            3             65
  CLUS_4           14            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MCF2 MUTATED        4      5      4      2      7      0      2      1      6
  MCF2 WILD-TYPE     36     57     24     78     62     48     41     27     68
D1297V10, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            5             57
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            6             68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2 MUTATED        0      1      0      2
  MCF2 WILD-TYPE     33     30     27     17
D1297V11, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCF2 MUTATED        2      0      1      0
  MCF2 WILD-TYPE     52     10     23     22
D1297V12, multiclass
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1298) Variable = PSD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD3 MUTATED        1      0      0      1
  PSD3 WILD-TYPE     45     58     64     42
D1298V1, multiclass
[1] "Remove cluster labels:" "PSD3 MUTATED"          
clus
  PSD3 MUTATED PSD3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AY-4071 
"PSD3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PSD3 MUTATED        1      0      1
  PSD3 WILD-TYPE     50     83     76
D1298V2, multiclass
[1] "Remove cluster labels:" "PSD3 MUTATED"          
clus
  PSD3 MUTATED PSD3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" "PSD3 WILD-TYPE" 
    TCGA-AY-4071 
"PSD3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD3 MUTATED        8      2      0      0
  PSD3 WILD-TYPE    170    181    101     20
D1298V3, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PSD3 MUTATED        3      0      6
  PSD3 WILD-TYPE     84     80     94
D1298V4, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PSD3 MUTATED        1      4      5
  PSD3 WILD-TYPE     88    156    133
D1298V5, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PSD3 MUTATED        6      4      0
  PSD3 WILD-TYPE    176    129     72
D1298V6, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD3 MUTATED        1      5      2      3
  PSD3 WILD-TYPE    111     91     90    183
D1298V7, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSD3 MUTATED        1      2      4      0      2      0      2
  PSD3 WILD-TYPE     59     48     45     40     61    125     97
D1298V8, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD3 MUTATED        5      2      0      4
  PSD3 WILD-TYPE    125     76     68    192
D1298V9, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PSD3 MUTATED        1      1      0      1      6      0      0      1      1
  PSD3 WILD-TYPE     39     61     28     79     63     48     43     27     73
D1298V10, multiclass
        clus
vv       PSD3 MUTATED PSD3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD3 MUTATED        0      0      0      0
  PSD3 WILD-TYPE     33     31     27     19
D1298V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD3 MUTATED        0      0      0      0
  PSD3 WILD-TYPE     54     10     24     22
D1298V12, multiclass

Clustering(1299) Variable = ARHGAP27 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP27 MUTATED        4      0      0      2
  ARHGAP27 WILD-TYPE     42     58     64     41
D1299V1, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP27 MUTATED        5      0      1
  ARHGAP27 WILD-TYPE     46     83     76
D1299V2, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP27 MUTATED       10      1      0      1
  ARHGAP27 WILD-TYPE    168    182    101     19
D1299V3, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1               10                168
  CLUS_2                1                182
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP27 MUTATED        2      1      2
  ARHGAP27 WILD-TYPE     85     79     98
D1299V4, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP27 MUTATED        1      4      5
  ARHGAP27 WILD-TYPE     88    156    133
D1299V5, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP27 MUTATED        5      3      2
  ARHGAP27 WILD-TYPE    177    130     70
D1299V6, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                3                130
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP27 MUTATED        1      3      1      7
  ARHGAP27 WILD-TYPE    111     93     91    179
D1299V7, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                3                 93
  CLUS_3                1                 91
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP27 MUTATED        2      0      4      0      0      0      6
  ARHGAP27 WILD-TYPE     58     50     45     40     63    125     93
D1299V8, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP27 MUTATED        2      1      0      8
  ARHGAP27 WILD-TYPE    128     77     68    188
D1299V9, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                8                188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP27 MUTATED        1      2      0      0      7      0      0      1
  ARHGAP27 WILD-TYPE     39     60     28     80     62     48     43     27
                    vv
clus                 CLUS_9
  ARHGAP27 MUTATED        0
  ARHGAP27 WILD-TYPE     74
D1299V10, multiclass
        clus
vv       ARHGAP27 MUTATED ARHGAP27 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP27 MUTATED        1      0      0      1
  ARHGAP27 WILD-TYPE     32     31     27     18
D1299V11, multiclass
[1] "Remove cluster labels:" "ARHGAP27 MUTATED"      
clus
  ARHGAP27 MUTATED ARHGAP27 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6654         TCGA-A6-6782 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3511         TCGA-AD-5900 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AD-6548         TCGA-AD-6889         TCGA-AD-6901 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-4110         TCGA-AF-6655 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3731         TCGA-AG-3732 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AY-6196         TCGA-AZ-4323 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-5403         TCGA-AZ-6598 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP27 MUTATED        1      0      1      0
  ARHGAP27 WILD-TYPE     53     10     23     22
D1299V12, multiclass
[1] "Remove cluster labels:" "ARHGAP27 MUTATED"      
clus
  ARHGAP27 MUTATED ARHGAP27 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6654         TCGA-A6-6782 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3511         TCGA-AD-5900 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AD-6548         TCGA-AD-6889         TCGA-AD-6901 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-4110         TCGA-AF-6655 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3731         TCGA-AG-3732 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AY-6196         TCGA-AZ-4323 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-5403         TCGA-AZ-6598 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" "ARHGAP27 WILD-TYPE" 

Clustering(1300) Variable = C20ORF117 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF117 MUTATED        3      2      0      0
  C20ORF117 WILD-TYPE     43     56     64     43
D1300V1, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 3                  43
  CLUS_2                 2                  56
  CLUS_3                 0                  64
  CLUS_4                 0                  43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF117 MUTATED        2      3      0
  C20ORF117 WILD-TYPE     49     80     77
D1300V2, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 2                  49
  CLUS_2                 3                  80
  CLUS_3                 0                  77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF117 MUTATED       14      1      2      0
  C20ORF117 WILD-TYPE    164    182     99     20
D1300V3, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                14                 164
  CLUS_2                 1                 182
  CLUS_3                 2                  99
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF117 MUTATED        6      1      6
  C20ORF117 WILD-TYPE     81     79     94
D1300V4, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 6                  81
  CLUS_2                 1                  79
  CLUS_3                 6                  94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF117 MUTATED        5      4      7
  C20ORF117 WILD-TYPE     84    156    131
D1300V5, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 5                  84
  CLUS_2                 4                 156
  CLUS_3                 7                 131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF117 MUTATED       11      4      1
  C20ORF117 WILD-TYPE    171    129     71
D1300V6, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                11                 171
  CLUS_2                 4                 129
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF117 MUTATED        2      4      8      4
  C20ORF117 WILD-TYPE    110     92     84    182
D1300V7, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 4                  92
  CLUS_3                 8                  84
  CLUS_4                 4                 182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C20ORF117 MUTATED        0      1     10      0      1      3      3
  C20ORF117 WILD-TYPE     60     49     39     40     62    122     96
D1300V8, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 1                  49
  CLUS_3                10                  39
  CLUS_4                 0                  40
  CLUS_5                 1                  62
  CLUS_6                 3                 122
  CLUS_7                 3                  96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF117 MUTATED        7      3      1      6
  C20ORF117 WILD-TYPE    123     75     67    190
D1300V9, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 7                 123
  CLUS_2                 3                  75
  CLUS_3                 1                  67
  CLUS_4                 6                 190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C20ORF117 MUTATED        1      5      0      3      7      0      0      0
  C20ORF117 WILD-TYPE     39     57     28     77     62     48     43     28
                     vv
clus                  CLUS_9
  C20ORF117 MUTATED        1
  C20ORF117 WILD-TYPE     73
D1300V10, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 5                  57
  CLUS_3                 0                  28
  CLUS_4                 3                  77
  CLUS_5                 7                  62
  CLUS_6                 0                  48
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF117 MUTATED        1      1      0      5
  C20ORF117 WILD-TYPE     32     30     27     14
D1300V11, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 1                  30
  CLUS_3                 0                  27
  CLUS_4                 5                  14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF117 MUTATED        5      0      2      0
  C20ORF117 WILD-TYPE     49     10     22     22
D1300V12, multiclass
        clus
vv       C20ORF117 MUTATED C20ORF117 WILD-TYPE
  CLUS_1                 5                  49
  CLUS_2                 0                  10
  CLUS_3                 2                  22
  CLUS_4                 0                  22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1301) Variable = NKTR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        2      1      0      2
  NKTR WILD-TYPE     44     57     64     41
D1301V1, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKTR MUTATED        3      1      1
  NKTR WILD-TYPE     48     82     76
D1301V2, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        8      5      0      0
  NKTR WILD-TYPE    170    178    101     20
D1301V3, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            8            170
  CLUS_2            5            178
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKTR MUTATED        2      2      5
  NKTR WILD-TYPE     85     78     95
D1301V4, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKTR MUTATED        3      7      3
  NKTR WILD-TYPE     86    153    135
D1301V5, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NKTR MUTATED        3      8      2
  NKTR WILD-TYPE    179    125     70
D1301V6, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3            179
  CLUS_2            8            125
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        4      3      1      6
  NKTR WILD-TYPE    108     93     91    180
D1301V7, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            4            108
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NKTR MUTATED        3      2      4      0      0      1      4
  NKTR WILD-TYPE     57     48     45     40     63    124     95
D1301V8, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        4      1      2      5
  NKTR WILD-TYPE    126     77     66    191
D1301V9, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NKTR MUTATED        1      1      0      1      6      0      2      0      1
  NKTR WILD-TYPE     39     61     28     79     63     48     41     28     73
D1301V10, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        1      0      1      2
  NKTR WILD-TYPE     32     31     26     17
D1301V11, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKTR MUTATED        1      0      2      1
  NKTR WILD-TYPE     53     10     22     21
D1301V12, multiclass
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1302) Variable = KLF5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        0      0      1      1
  KLF5 WILD-TYPE     46     58     63     42
D1302V1, multiclass
[1] "Remove cluster labels:" "KLF5 MUTATED"          
clus
  KLF5 MUTATED KLF5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AY-4071 
"KLF5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        1      0      1
  KLF5 WILD-TYPE     50     83     76
D1302V2, multiclass
[1] "Remove cluster labels:" "KLF5 MUTATED"          
clus
  KLF5 MUTATED KLF5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AY-4071 
"KLF5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        6      5      1      0
  KLF5 WILD-TYPE    172    178    100     20
D1302V3, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        3      4      3
  KLF5 WILD-TYPE     84     76     97
D1302V4, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            4             76
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        0      5      7
  KLF5 WILD-TYPE     89    155    131
D1302V5, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        6      5      1
  KLF5 WILD-TYPE    176    128     71
D1302V6, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        5      3      2      2
  KLF5 WILD-TYPE    107     93     90    184
D1302V7, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLF5 MUTATED        3      3      3      1      0      0      2
  KLF5 WILD-TYPE     57     47     46     39     63    125     97
D1302V8, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        4      3      2      2
  KLF5 WILD-TYPE    126     75     66    194
D1302V9, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KLF5 MUTATED        1      3      0      2      1      1      2      0      1
  KLF5 WILD-TYPE     39     59     28     78     68     47     41     28     73
D1302V10, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        0      1      0      0
  KLF5 WILD-TYPE     33     30     27     19
D1302V11, multiclass
[1] "Remove cluster labels:" "KLF5 MUTATED"          
clus
  KLF5 MUTATED KLF5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-G5-6641 
"KLF5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        1      0      0      0
  KLF5 WILD-TYPE     53     10     24     22
D1302V12, multiclass
[1] "Remove cluster labels:" "KLF5 MUTATED"          
clus
  KLF5 MUTATED KLF5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" "KLF5 WILD-TYPE" 
    TCGA-G5-6641 
"KLF5 WILD-TYPE" 

Clustering(1303) Variable = PARG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARG MUTATED        0      0      0      0
  PARG WILD-TYPE     46     58     64     43
D1303V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PARG MUTATED        0      0      0
  PARG WILD-TYPE     51     83     77
D1303V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARG MUTATED        9      1      2      0
  PARG WILD-TYPE    169    182     99     20
D1303V3, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PARG MUTATED        5      2      5
  PARG WILD-TYPE     82     78     95
D1303V4, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PARG MUTATED        2      2      6
  PARG WILD-TYPE     87    158    132
D1303V5, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PARG MUTATED        6      3      1
  PARG WILD-TYPE    176    130     71
D1303V6, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARG MUTATED        2      5      4      1
  PARG WILD-TYPE    110     91     88    185
D1303V7, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            4             88
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PARG MUTATED        0      2      6      1      2      0      1
  PARG WILD-TYPE     60     48     43     39     61    125     98
D1303V8, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARG MUTATED        4      4      1      3
  PARG WILD-TYPE    126     74     67    193
D1303V9, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            4            126
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PARG MUTATED        2      4      0      1      3      0      1      0      1
  PARG WILD-TYPE     38     58     28     79     66     48     42     28     73
D1303V10, multiclass
        clus
vv       PARG MUTATED PARG WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARG MUTATED        1      1      0      0
  PARG WILD-TYPE     32     30     27     19
D1303V11, multiclass
[1] "Remove cluster labels:" "PARG MUTATED"          
clus
  PARG MUTATED PARG WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6460     TCGA-F4-6569 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARG MUTATED        1      1      0      0
  PARG WILD-TYPE     53      9     24     22
D1303V12, multiclass
[1] "Remove cluster labels:" "PARG MUTATED"          
clus
  PARG MUTATED PARG WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6460     TCGA-F4-6569 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" "PARG WILD-TYPE" 

Clustering(1304) Variable = OR6A2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6A2 MUTATED        1      0      0      1
  OR6A2 WILD-TYPE     45     58     64     42
D1304V1, multiclass
[1] "Remove cluster labels:" "OR6A2 MUTATED"         
clus
  OR6A2 MUTATED OR6A2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AY-4071 
"OR6A2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6A2 MUTATED        2      0      0
  OR6A2 WILD-TYPE     49     83     77
D1304V2, multiclass
[1] "Remove cluster labels:" "OR6A2 MUTATED"         
clus
  OR6A2 MUTATED OR6A2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" "OR6A2 WILD-TYPE" 
     TCGA-AY-4071 
"OR6A2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6A2 MUTATED        4      0      4      0
  OR6A2 WILD-TYPE    174    183     97     20
D1304V3, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6A2 MUTATED        4      1      1
  OR6A2 WILD-TYPE     83     79     99
D1304V4, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6A2 MUTATED        1      0      5
  OR6A2 WILD-TYPE     88    160    133
D1304V5, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR6A2 MUTATED        5      0      1
  OR6A2 WILD-TYPE    177    133     71
D1304V6, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6A2 MUTATED        1      0      5      2
  OR6A2 WILD-TYPE    111     96     87    184
D1304V7, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              96
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR6A2 MUTATED        2      1      0      0      3      0      2
  OR6A2 WILD-TYPE     58     49     49     40     60    125     97
D1304V8, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6A2 MUTATED        3      2      1      1
  OR6A2 WILD-TYPE    127     76     67    195
D1304V9, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR6A2 MUTATED        1      2      0      2      1      0      1      0
  OR6A2 WILD-TYPE     39     60     28     78     68     48     42     28
                 vv
clus              CLUS_9
  OR6A2 MUTATED        0
  OR6A2 WILD-TYPE     74
D1304V10, multiclass
        clus
vv       OR6A2 MUTATED OR6A2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6A2 MUTATED        0      0      0      0
  OR6A2 WILD-TYPE     33     31     27     19
D1304V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR6A2 MUTATED        0      0      0      0
  OR6A2 WILD-TYPE     54     10     24     22
D1304V12, multiclass

Clustering(1305) Variable = MAGI1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI1 MUTATED        3      1      1      4
  MAGI1 WILD-TYPE     43     57     63     39
D1305V1, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI1 MUTATED        4      2      3
  MAGI1 WILD-TYPE     47     81     74
D1305V2, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI1 MUTATED       21      4      1      0
  MAGI1 WILD-TYPE    157    179    100     20
D1305V3, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI1 MUTATED        6      2      8
  MAGI1 WILD-TYPE     81     78     92
D1305V4, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI1 MUTATED        5     12      6
  MAGI1 WILD-TYPE     84    148    132
D1305V5, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            12             148
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI1 MUTATED        9      9      5
  MAGI1 WILD-TYPE    173    124     67
D1305V6, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             9             124
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI1 MUTATED        2      9      4     11
  MAGI1 WILD-TYPE    110     87     88    175
D1305V7, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             9              87
  CLUS_3             4              88
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGI1 MUTATED        2      2      8      1      2      2      9
  MAGI1 WILD-TYPE     58     48     41     39     61    123     90
D1305V8, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI1 MUTATED        7      3      0     15
  MAGI1 WILD-TYPE    123     75     68    181
D1305V9, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            15             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAGI1 MUTATED        1      2      3      2     12      2      1      1
  MAGI1 WILD-TYPE     39     60     25     78     57     46     42     27
                 vv
clus              CLUS_9
  MAGI1 MUTATED        1
  MAGI1 WILD-TYPE     73
D1305V10, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5            12              57
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI1 MUTATED        0      1      0      4
  MAGI1 WILD-TYPE     33     30     27     15
D1305V11, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI1 MUTATED        2      0      3      0
  MAGI1 WILD-TYPE     52     10     21     22
D1305V12, multiclass
        clus
vv       MAGI1 MUTATED MAGI1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1306) Variable = CALCOCO2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCOCO2 MUTATED        0      0      1      1
  CALCOCO2 WILD-TYPE     46     58     63     42
D1306V1, multiclass
[1] "Remove cluster labels:" "CALCOCO2 MUTATED"      
clus
  CALCOCO2 MUTATED CALCOCO2 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00K 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CALCOCO2 MUTATED        1      0      1
  CALCOCO2 WILD-TYPE     50     83     76
D1306V2, multiclass
[1] "Remove cluster labels:" "CALCOCO2 MUTATED"      
clus
  CALCOCO2 MUTATED CALCOCO2 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00K 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCOCO2 MUTATED        4      2      2      0
  CALCOCO2 WILD-TYPE    174    181     99     20
D1306V3, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                2                181
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CALCOCO2 MUTATED        2      1      3
  CALCOCO2 WILD-TYPE     85     79     97
D1306V4, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CALCOCO2 MUTATED        2      2      3
  CALCOCO2 WILD-TYPE     87    158    135
D1306V5, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                2                158
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CALCOCO2 MUTATED        4      2      1
  CALCOCO2 WILD-TYPE    178    131     71
D1306V6, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                2                131
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCOCO2 MUTATED        1      1      3      3
  CALCOCO2 WILD-TYPE    111     95     89    183
D1306V7, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                1                 95
  CLUS_3                3                 89
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CALCOCO2 MUTATED        0      1      1      2      1      1      2
  CALCOCO2 WILD-TYPE     60     49     48     38     62    124     97
D1306V8, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCOCO2 MUTATED        3      1      0      4
  CALCOCO2 WILD-TYPE    127     77     68    192
D1306V9, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CALCOCO2 MUTATED        2      1      0      2      2      1      0      0
  CALCOCO2 WILD-TYPE     38     61     28     78     67     47     43     28
                    vv
clus                 CLUS_9
  CALCOCO2 MUTATED        0
  CALCOCO2 WILD-TYPE     74
D1306V10, multiclass
        clus
vv       CALCOCO2 MUTATED CALCOCO2 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                2                 67
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCOCO2 MUTATED        1      0      0      0
  CALCOCO2 WILD-TYPE     32     31     27     19
D1306V11, multiclass
[1] "Remove cluster labels:" "CALCOCO2 MUTATED"      
clus
  CALCOCO2 MUTATED CALCOCO2 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-6167         TCGA-CM-6674 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-G5-6641 
"CALCOCO2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCOCO2 MUTATED        1      0      0      0
  CALCOCO2 WILD-TYPE     53     10     24     22
D1306V12, multiclass
[1] "Remove cluster labels:" "CALCOCO2 MUTATED"      
clus
  CALCOCO2 MUTATED CALCOCO2 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-6167         TCGA-CM-6674 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" "CALCOCO2 WILD-TYPE" 
        TCGA-G5-6641 
"CALCOCO2 WILD-TYPE" 

Clustering(1307) Variable = IKBKE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        1      0      0      1
  IKBKE WILD-TYPE     45     58     64     42
D1307V1, multiclass
[1] "Remove cluster labels:" "IKBKE MUTATED"         
clus
  IKBKE MUTATED IKBKE WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AY-4071 
"IKBKE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED        0      1      1
  IKBKE WILD-TYPE     51     82     76
D1307V2, multiclass
[1] "Remove cluster labels:" "IKBKE MUTATED"         
clus
  IKBKE MUTATED IKBKE WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" "IKBKE WILD-TYPE" 
     TCGA-AY-4071 
"IKBKE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        6      1      1      0
  IKBKE WILD-TYPE    172    182    100     20
D1307V3, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED        0      1      4
  IKBKE WILD-TYPE     87     79     96
D1307V4, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED        1      5      1
  IKBKE WILD-TYPE     88    155    137
D1307V5, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED        2      4      1
  IKBKE WILD-TYPE    180    129     71
D1307V6, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        2      3      0      3
  IKBKE WILD-TYPE    110     93     92    183
D1307V7, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IKBKE MUTATED        2      0      3      0      1      1      1
  IKBKE WILD-TYPE     58     50     46     40     62    124     98
D1307V8, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        2      1      1      4
  IKBKE WILD-TYPE    128     77     67    192
D1307V9, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IKBKE MUTATED        1      1      0      1      4      0      1      0
  IKBKE WILD-TYPE     39     61     28     79     65     48     42     28
                 vv
clus              CLUS_9
  IKBKE MUTATED        0
  IKBKE WILD-TYPE     74
D1307V10, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        0      1      1      1
  IKBKE WILD-TYPE     33     30     26     18
D1307V11, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        0      1      1      1
  IKBKE WILD-TYPE     54      9     23     21
D1307V12, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             0              54
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1308) Variable = SLC44A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        2      0      0      1
  SLC44A4 WILD-TYPE     44     58     64     42
D1308V1, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A4 MUTATED        1      2      0
  SLC44A4 WILD-TYPE     50     81     77
D1308V2, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED       11      0      0      1
  SLC44A4 WILD-TYPE    167    183    101     19
D1308V3, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A4 MUTATED        3      0      6
  SLC44A4 WILD-TYPE     84     80     94
D1308V4, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A4 MUTATED        0      6      5
  SLC44A4 WILD-TYPE     89    154    133
D1308V5, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               6               154
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A4 MUTATED        6      4      1
  SLC44A4 WILD-TYPE    176    129     71
D1308V6, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        0      5      4      3
  SLC44A4 WILD-TYPE    112     91     88    183
D1308V7, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC44A4 MUTATED        0      0      8      0      1      1      2
  SLC44A4 WILD-TYPE     60     50     41     40     62    124     97
D1308V8, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               8                41
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        7      2      0      3
  SLC44A4 WILD-TYPE    123     76     68    193
D1308V9, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC44A4 MUTATED        1      4      1      1      5      0      0      0
  SLC44A4 WILD-TYPE     39     58     27     79     64     48     43     28
                   vv
clus                CLUS_9
  SLC44A4 MUTATED        0
  SLC44A4 WILD-TYPE     74
D1308V10, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        1      0      0      3
  SLC44A4 WILD-TYPE     32     31     27     16
D1308V11, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        2      0      2      0
  SLC44A4 WILD-TYPE     52     10     22     22
D1308V12, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1309) Variable = GANAB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        2      0      2      0
  GANAB WILD-TYPE     44     58     62     43
D1309V1, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        2      2      0
  GANAB WILD-TYPE     49     81     77
D1309V2, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        7      4      3      0
  GANAB WILD-TYPE    171    179     98     20
D1309V3, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        7      1      2
  GANAB WILD-TYPE     80     79     98
D1309V4, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             7              80
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        1      3      7
  GANAB WILD-TYPE     88    157    131
D1309V5, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        7      3      1
  GANAB WILD-TYPE    175    130     71
D1309V6, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        1      2      7      4
  GANAB WILD-TYPE    111     94     85    182
D1309V7, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             7              85
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GANAB MUTATED        1      1      3      1      4      2      2
  GANAB WILD-TYPE     59     49     46     39     59    123     97
D1309V8, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        2      5      2      5
  GANAB WILD-TYPE    128     73     66    191
D1309V9, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2             128
  CLUS_2             5              73
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GANAB MUTATED        1      5      0      1      2      0      1      1
  GANAB WILD-TYPE     39     57     28     79     67     48     42     27
                 vv
clus              CLUS_9
  GANAB MUTATED        3
  GANAB WILD-TYPE     71
D1309V10, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        2      2      0      0
  GANAB WILD-TYPE     31     29     27     19
D1309V11, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        3      1      0      0
  GANAB WILD-TYPE     51      9     24     22
D1309V12, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1310) Variable = SAMD9L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        6      3      1      4
  SAMD9L WILD-TYPE     40     55     63     39
D1310V1, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              6               40
  CLUS_2              3               55
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD9L MUTATED        6      4      4
  SAMD9L WILD-TYPE     45     79     73
D1310V2, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              6               45
  CLUS_2              4               79
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED       19      4      6      1
  SAMD9L WILD-TYPE    159    179     95     19
D1310V3, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1             19              159
  CLUS_2              4              179
  CLUS_3              6               95
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD9L MUTATED        4      6      7
  SAMD9L WILD-TYPE     83     74     93
D1310V4, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              4               83
  CLUS_2              6               74
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD9L MUTATED        3     12      7
  SAMD9L WILD-TYPE     86    148    131
D1310V5, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              3               86
  CLUS_2             12              148
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD9L MUTATED        6      8      8
  SAMD9L WILD-TYPE    176    125     64
D1310V6, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              6              176
  CLUS_2              8              125
  CLUS_3              8               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        5      5      5     15
  SAMD9L WILD-TYPE    107     91     87    171
D1310V7, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              5              107
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4             15              171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAMD9L MUTATED        3      3      6      1      3      4     10
  SAMD9L WILD-TYPE     57     47     43     39     60    121     89
D1310V8, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              4              121
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        7      3      4     15
  SAMD9L WILD-TYPE    123     75     64    181
D1310V9, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              7              123
  CLUS_2              3               75
  CLUS_3              4               64
  CLUS_4             15              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SAMD9L MUTATED        1      2      4      5      7      2      3      2
  SAMD9L WILD-TYPE     39     60     24     75     62     46     40     26
                  vv
clus               CLUS_9
  SAMD9L MUTATED        3
  SAMD9L WILD-TYPE     71
D1310V10, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              4               24
  CLUS_4              5               75
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        3      1      1      2
  SAMD9L WILD-TYPE     30     30     26     17
D1310V11, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        0      0      4      3
  SAMD9L WILD-TYPE     54     10     20     19
D1310V12, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1311) Variable = CLPTM1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLPTM1 MUTATED        1      0      1      0
  CLPTM1 WILD-TYPE     45     58     63     43
D1311V1, multiclass
[1] "Remove cluster labels:" "CLPTM1 MUTATED"        
clus
  CLPTM1 MUTATED CLPTM1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AY-4071 
"CLPTM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLPTM1 MUTATED        1      0      1
  CLPTM1 WILD-TYPE     50     83     76
D1311V2, multiclass
[1] "Remove cluster labels:" "CLPTM1 MUTATED"        
clus
  CLPTM1 MUTATED CLPTM1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" "CLPTM1 WILD-TYPE" 
      TCGA-AY-4071 
"CLPTM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLPTM1 MUTATED       11      0      1      0
  CLPTM1 WILD-TYPE    167    183    100     20
D1311V3, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLPTM1 MUTATED        3      0      7
  CLPTM1 WILD-TYPE     84     80     93
D1311V4, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLPTM1 MUTATED        2      3      7
  CLPTM1 WILD-TYPE     87    157    131
D1311V5, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLPTM1 MUTATED        6      5      1
  CLPTM1 WILD-TYPE    176    128     71
D1311V6, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLPTM1 MUTATED        1      6      3      2
  CLPTM1 WILD-TYPE    111     90     89    184
D1311V7, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLPTM1 MUTATED        0      3      6      0      0      1      2
  CLPTM1 WILD-TYPE     60     47     43     40     63    124     97
D1311V8, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              3               47
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLPTM1 MUTATED        3      3      0      6
  CLPTM1 WILD-TYPE    127     75     68    190
D1311V9, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLPTM1 MUTATED        1      3      0      2      4      1      0      0
  CLPTM1 WILD-TYPE     39     59     28     78     65     47     43     28
                  vv
clus               CLUS_9
  CLPTM1 MUTATED        1
  CLPTM1 WILD-TYPE     73
D1311V10, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLPTM1 MUTATED        2      0      0      1
  CLPTM1 WILD-TYPE     31     31     27     18
D1311V11, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLPTM1 MUTATED        1      0      1      1
  CLPTM1 WILD-TYPE     53     10     23     21
D1311V12, multiclass
        clus
vv       CLPTM1 MUTATED CLPTM1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1312) Variable = SCARA5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARA5 MUTATED        2      2      0      2
  SCARA5 WILD-TYPE     44     56     64     41
D1312V1, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARA5 MUTATED        2      4      0
  SCARA5 WILD-TYPE     49     79     77
D1312V2, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              4               79
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARA5 MUTATED       10      3      2      0
  SCARA5 WILD-TYPE    168    180     99     20
D1312V3, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARA5 MUTATED        3      0      6
  SCARA5 WILD-TYPE     84     80     94
D1312V4, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARA5 MUTATED        3      3      5
  SCARA5 WILD-TYPE     86    157    133
D1312V5, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCARA5 MUTATED        6      3      2
  SCARA5 WILD-TYPE    176    130     70
D1312V6, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARA5 MUTATED        1      5      4      5
  SCARA5 WILD-TYPE    111     91     88    181
D1312V7, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCARA5 MUTATED        0      2      7      0      0      3      3
  SCARA5 WILD-TYPE     60     48     42     40     63    122     96
D1312V8, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARA5 MUTATED        5      2      3      5
  SCARA5 WILD-TYPE    125     76     65    191
D1312V9, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              3               65
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SCARA5 MUTATED        0      1      1      0      8      0      1      1
  SCARA5 WILD-TYPE     40     61     27     80     61     48     42     27
                  vv
clus               CLUS_9
  SCARA5 MUTATED        3
  SCARA5 WILD-TYPE     71
D1312V10, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARA5 MUTATED        0      0      0      4
  SCARA5 WILD-TYPE     33     31     27     15
D1312V11, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCARA5 MUTATED        2      0      2      0
  SCARA5 WILD-TYPE     52     10     22     22
D1312V12, multiclass
        clus
vv       SCARA5 MUTATED SCARA5 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1313) Variable = RAPGEF6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF6 MUTATED        2      0      1      4
  RAPGEF6 WILD-TYPE     44     58     63     39
D1313V1, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF6 MUTATED        2      1      4
  RAPGEF6 WILD-TYPE     49     82     73
D1313V2, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               4                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF6 MUTATED       13      2      5      0
  RAPGEF6 WILD-TYPE    165    181     96     20
D1313V3, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               2               181
  CLUS_3               5                96
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF6 MUTATED        7      3      3
  RAPGEF6 WILD-TYPE     80     77     97
D1313V4, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               3                77
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF6 MUTATED        3      6      6
  RAPGEF6 WILD-TYPE     86    154    132
D1313V5, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               6               154
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RAPGEF6 MUTATED        8      5      2
  RAPGEF6 WILD-TYPE    174    128     70
D1313V6, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF6 MUTATED        3      3      8      6
  RAPGEF6 WILD-TYPE    109     93     84    180
D1313V7, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               8                84
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAPGEF6 MUTATED        2      1      7      2      3      2      3
  RAPGEF6 WILD-TYPE     58     49     42     38     60    123     96
D1313V8, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               7                42
  CLUS_4               2                38
  CLUS_5               3                60
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF6 MUTATED        7      5      3      5
  RAPGEF6 WILD-TYPE    123     73     65    191
D1313V9, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               5                73
  CLUS_3               3                65
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAPGEF6 MUTATED        0      6      2      1      7      1      1      0
  RAPGEF6 WILD-TYPE     40     56     26     79     62     47     42     28
                   vv
clus                CLUS_9
  RAPGEF6 MUTATED        2
  RAPGEF6 WILD-TYPE     72
D1313V10, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               6                56
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               7                62
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF6 MUTATED        1      1      0      2
  RAPGEF6 WILD-TYPE     32     30     27     17
D1313V11, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAPGEF6 MUTATED        2      1      1      0
  RAPGEF6 WILD-TYPE     52      9     23     22
D1313V12, multiclass
        clus
vv       RAPGEF6 MUTATED RAPGEF6 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1314) Variable = CEP164 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP164 MUTATED        3      0      0      5
  CEP164 WILD-TYPE     43     58     64     38
D1314V1, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP164 MUTATED        6      1      1
  CEP164 WILD-TYPE     45     82     76
D1314V2, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              6               45
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP164 MUTATED       19      4      2      0
  CEP164 WILD-TYPE    159    179     99     20
D1314V3, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP164 MUTATED        6      0     10
  CEP164 WILD-TYPE     81     80     90
D1314V4, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3             10               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP164 MUTATED        1     10      7
  CEP164 WILD-TYPE     88    150    131
D1314V5, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              1               88
  CLUS_2             10              150
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP164 MUTATED        6     10      2
  CEP164 WILD-TYPE    176    123     70
D1314V6, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              6              176
  CLUS_2             10              123
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP164 MUTATED        1      9      6      9
  CEP164 WILD-TYPE    111     87     86    177
D1314V7, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              9               87
  CLUS_3              6               86
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEP164 MUTATED        2      3      8      2      2      0      8
  CEP164 WILD-TYPE     58     47     41     38     61    125     91
D1314V8, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              8               41
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP164 MUTATED        8      5      1     11
  CEP164 WILD-TYPE    122     73     67    185
D1314V9, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEP164 MUTATED        5      5      2      2      9      0      0      2
  CEP164 WILD-TYPE     35     57     26     78     60     48     43     26
                  vv
clus               CLUS_9
  CEP164 MUTATED        0
  CEP164 WILD-TYPE     74
D1314V10, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              5               35
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP164 MUTATED        1      1      1      2
  CEP164 WILD-TYPE     32     30     26     17
D1314V11, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP164 MUTATED        2      0      3      0
  CEP164 WILD-TYPE     52     10     21     22
D1314V12, multiclass
        clus
vv       CEP164 MUTATED CEP164 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1315) Variable = PAK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK4 MUTATED        0      0      0      0
  PAK4 WILD-TYPE     46     58     64     43
D1315V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK4 MUTATED        0      0      0
  PAK4 WILD-TYPE     51     83     77
D1315V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK4 MUTATED        4      1      0      1
  PAK4 WILD-TYPE    174    182    101     19
D1315V3, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK4 MUTATED        3      0      3
  PAK4 WILD-TYPE     84     80     97
D1315V4, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK4 MUTATED        1      1      4
  PAK4 WILD-TYPE     88    159    134
D1315V5, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK4 MUTATED        4      2      0
  PAK4 WILD-TYPE    178    131     72
D1315V6, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK4 MUTATED        0      4      2      0
  PAK4 WILD-TYPE    112     92     90    186
D1315V7, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK4 MUTATED        0      1      5      0      0      0      0
  PAK4 WILD-TYPE     60     49     44     40     63    125     99
D1315V8, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK4 MUTATED        6      0      0      0
  PAK4 WILD-TYPE    124     78     68    196
D1315V9, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAK4 MUTATED        1      0      0      0      3      0      2      0      0
  PAK4 WILD-TYPE     39     62     28     80     66     48     41     28     74
D1315V10, multiclass
        clus
vv       PAK4 MUTATED PAK4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK4 MUTATED        1      0      0      1
  PAK4 WILD-TYPE     32     31     27     18
D1315V11, multiclass
[1] "Remove cluster labels:" "PAK4 MUTATED"          
clus
  PAK4 MUTATED PAK4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AZ-4323     TCGA-AZ-4616 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK4 MUTATED        2      0      0      0
  PAK4 WILD-TYPE     52     10     24     22
D1315V12, multiclass
[1] "Remove cluster labels:" "PAK4 MUTATED"          
clus
  PAK4 MUTATED PAK4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AZ-4323     TCGA-AZ-4616 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" "PAK4 WILD-TYPE" 

Clustering(1316) Variable = DIMT1L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIMT1L MUTATED        0      0      0      0
  DIMT1L WILD-TYPE     46     58     64     43
D1316V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIMT1L MUTATED        0      0      0
  DIMT1L WILD-TYPE     51     83     77
D1316V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIMT1L MUTATED        4      2      0      0
  DIMT1L WILD-TYPE    174    181    101     20
D1316V3, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIMT1L MUTATED        3      0      3
  DIMT1L WILD-TYPE     84     80     97
D1316V4, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIMT1L MUTATED        1      2      3
  DIMT1L WILD-TYPE     88    158    135
D1316V5, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIMT1L MUTATED        3      2      1
  DIMT1L WILD-TYPE    179    131     71
D1316V6, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIMT1L MUTATED        1      3      2      0
  DIMT1L WILD-TYPE    111     93     90    186
D1316V7, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIMT1L MUTATED        1      1      3      0      1      0      0
  DIMT1L WILD-TYPE     59     49     46     40     62    125     99
D1316V8, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIMT1L MUTATED        3      2      0      1
  DIMT1L WILD-TYPE    127     76     68    195
D1316V9, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DIMT1L MUTATED        0      2      0      0      1      1      2      0
  DIMT1L WILD-TYPE     40     60     28     80     68     47     41     28
                  vv
clus               CLUS_9
  DIMT1L MUTATED        0
  DIMT1L WILD-TYPE     74
D1316V10, multiclass
        clus
vv       DIMT1L MUTATED DIMT1L WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIMT1L MUTATED        0      0      0      1
  DIMT1L WILD-TYPE     33     31     27     18
D1316V11, multiclass
[1] "Remove cluster labels:" "DIMT1L MUTATED"        
clus
  DIMT1L MUTATED DIMT1L WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-G5-6641 
"DIMT1L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIMT1L MUTATED        1      0      0      0
  DIMT1L WILD-TYPE     53     10     24     22
D1316V12, multiclass
[1] "Remove cluster labels:" "DIMT1L MUTATED"        
clus
  DIMT1L MUTATED DIMT1L WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" "DIMT1L WILD-TYPE" 
      TCGA-G5-6641 
"DIMT1L WILD-TYPE" 

Clustering(1317) Variable = TAF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF2 MUTATED        1      0      0      6
  TAF2 WILD-TYPE     45     58     64     37
D1317V1, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF2 MUTATED        3      1      3
  TAF2 WILD-TYPE     48     82     74
D1317V2, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF2 MUTATED       13      3      1      3
  TAF2 WILD-TYPE    165    180    100     17
D1317V3, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF2 MUTATED        8      3      2
  TAF2 WILD-TYPE     79     77     98
D1317V4, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            3             77
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF2 MUTATED        1      8      7
  TAF2 WILD-TYPE     88    152    131
D1317V5, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            8            152
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF2 MUTATED        7      8      1
  TAF2 WILD-TYPE    175    125     71
D1317V6, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            8            125
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF2 MUTATED        3      4      5      8
  TAF2 WILD-TYPE    109     92     87    178
D1317V7, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAF2 MUTATED        3      3      4      2      1      1      6
  TAF2 WILD-TYPE     57     47     45     38     62    124     93
D1317V8, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF2 MUTATED        5      3      1     11
  TAF2 WILD-TYPE    125     75     67    185
D1317V9, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TAF2 MUTATED        2      3      3      2      4      2      1      1      2
  TAF2 WILD-TYPE     38     59     25     78     65     46     42     27     72
D1317V10, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            4             65
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF2 MUTATED        3      0      0      3
  TAF2 WILD-TYPE     30     31     27     16
D1317V11, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF2 MUTATED        4      0      1      1
  TAF2 WILD-TYPE     50     10     23     21
D1317V12, multiclass
        clus
vv       TAF2 MUTATED TAF2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1318) Variable = NR3C1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR3C1 MUTATED        0      0      0      3
  NR3C1 WILD-TYPE     46     58     64     40
D1318V1, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR3C1 MUTATED        1      1      1
  NR3C1 WILD-TYPE     50     82     76
D1318V2, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR3C1 MUTATED        6      4      0      0
  NR3C1 WILD-TYPE    172    179    101     20
D1318V3, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR3C1 MUTATED        3      4      0
  NR3C1 WILD-TYPE     84     76    100
D1318V4, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4              76
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR3C1 MUTATED        0      5      3
  NR3C1 WILD-TYPE     89    155    135
D1318V5, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR3C1 MUTATED        3      4      1
  NR3C1 WILD-TYPE    179    129     71
D1318V6, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR3C1 MUTATED        3      1      3      3
  NR3C1 WILD-TYPE    109     95     89    183
D1318V7, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NR3C1 MUTATED        3      1      2      1      1      0      2
  NR3C1 WILD-TYPE     57     49     47     39     62    125     97
D1318V8, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR3C1 MUTATED        3      3      1      2
  NR3C1 WILD-TYPE    127     75     67    194
D1318V9, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NR3C1 MUTATED        0      3      1      2      1      2      0      0
  NR3C1 WILD-TYPE     40     59     27     78     68     46     43     28
                 vv
clus              CLUS_9
  NR3C1 MUTATED        0
  NR3C1 WILD-TYPE     74
D1318V10, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR3C1 MUTATED        2      0      2      0
  NR3C1 WILD-TYPE     31     31     25     19
D1318V11, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR3C1 MUTATED        2      2      0      0
  NR3C1 WILD-TYPE     52      8     24     22
D1318V12, multiclass
        clus
vv       NR3C1 MUTATED NR3C1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1319) Variable = HEATR4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR4 MUTATED        2      0      1      2
  HEATR4 WILD-TYPE     44     58     63     41
D1319V1, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR4 MUTATED        2      0      3
  HEATR4 WILD-TYPE     49     83     74
D1319V2, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR4 MUTATED       14      2      1      0
  HEATR4 WILD-TYPE    164    181    100     20
D1319V3, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR4 MUTATED        7      0      4
  HEATR4 WILD-TYPE     80     80     96
D1319V4, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR4 MUTATED        2      3     10
  HEATR4 WILD-TYPE     87    157    128
D1319V5, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEATR4 MUTATED        9      5      1
  HEATR4 WILD-TYPE    173    128     71
D1319V6, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR4 MUTATED        1      5      5      6
  HEATR4 WILD-TYPE    111     91     87    180
D1319V7, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HEATR4 MUTATED        2      1      7      1      1      1      4
  HEATR4 WILD-TYPE     58     49     42     39     62    124     95
D1319V8, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR4 MUTATED        3      3      1      9
  HEATR4 WILD-TYPE    127     75     67    187
D1319V9, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HEATR4 MUTATED        1      2      2      1      7      2      0      1
  HEATR4 WILD-TYPE     39     60     26     79     62     46     43     27
                  vv
clus               CLUS_9
  HEATR4 MUTATED        0
  HEATR4 WILD-TYPE     74
D1319V10, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR4 MUTATED        3      0      0      2
  HEATR4 WILD-TYPE     30     31     27     17
D1319V11, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEATR4 MUTATED        3      0      1      1
  HEATR4 WILD-TYPE     51     10     23     21
D1319V12, multiclass
        clus
vv       HEATR4 MUTATED HEATR4 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1320) Variable = BCAR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAR3 MUTATED        1      0      0      0
  BCAR3 WILD-TYPE     45     58     64     43
D1320V1, multiclass
[1] "Remove cluster labels:" "BCAR3 MUTATED"         
clus
  BCAR3 MUTATED BCAR3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCAR3 MUTATED        1      0      0
  BCAR3 WILD-TYPE     50     83     77
D1320V2, multiclass
[1] "Remove cluster labels:" "BCAR3 MUTATED"         
clus
  BCAR3 MUTATED BCAR3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3950 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BCAR3 WILD-TYPE" "BCAR3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAR3 MUTATED       11      1      0      1
  BCAR3 WILD-TYPE    167    182    101     19
D1320V3, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCAR3 MUTATED        7      1      4
  BCAR3 WILD-TYPE     80     79     96
D1320V4, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCAR3 MUTATED        1      2      6
  BCAR3 WILD-TYPE     88    158    132
D1320V5, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCAR3 MUTATED        6      1      2
  BCAR3 WILD-TYPE    176    132     70
D1320V6, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAR3 MUTATED        1      4      7      1
  BCAR3 WILD-TYPE    111     92     85    185
D1320V7, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             7              85
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCAR3 MUTATED        0      2      6      1      2      0      2
  BCAR3 WILD-TYPE     60     48     43     39     61    125     97
D1320V8, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAR3 MUTATED        4      6      1      2
  BCAR3 WILD-TYPE    126     72     67    194
D1320V9, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BCAR3 MUTATED        2      6      0      0      3      0      1      1
  BCAR3 WILD-TYPE     38     56     28     80     66     48     42     27
                 vv
clus              CLUS_9
  BCAR3 MUTATED        0
  BCAR3 WILD-TYPE     74
D1320V10, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAR3 MUTATED        3      0      0      3
  BCAR3 WILD-TYPE     30     31     27     16
D1320V11, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAR3 MUTATED        5      0      1      0
  BCAR3 WILD-TYPE     49     10     23     22
D1320V12, multiclass
        clus
vv       BCAR3 MUTATED BCAR3 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1321) Variable = OR2T34 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T34 MUTATED        0      0      1      2
  OR2T34 WILD-TYPE     46     58     63     41
D1321V1, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T34 MUTATED        0      2      1
  OR2T34 WILD-TYPE     51     81     76
D1321V2, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T34 MUTATED        3      3      0      0
  OR2T34 WILD-TYPE    175    180    101     20
D1321V3, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T34 MUTATED        1      0      1
  OR2T34 WILD-TYPE     86     80     99
D1321V4, multiclass
[1] "Remove cluster labels:" "OR2T34 MUTATED"        
clus
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N       TCGA-AG-A036 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004       TCGA-AY-5543 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386       TCGA-AZ-4315 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681       TCGA-AZ-4682 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6622 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948       TCGA-CK-4950 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913       TCGA-CK-5914 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917       TCGA-CL-5918 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-5538 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929       TCGA-D5-6930 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000       TCGA-DC-5337 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G5-6641 
"OR2T34 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T34 MUTATED        1      4      0
  OR2T34 WILD-TYPE     88    156    138
D1321V5, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              0              138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2T34 MUTATED        0      3      2
  OR2T34 WILD-TYPE    182    130     70
D1321V6, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              0              182
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T34 MUTATED        2      0      0      4
  OR2T34 WILD-TYPE    110     96     92    182
D1321V7, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              0               96
  CLUS_3              0               92
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2T34 MUTATED        2      1      0      0      0      1      2
  OR2T34 WILD-TYPE     58     49     49     40     63    124     97
D1321V8, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T34 MUTATED        2      0      1      3
  OR2T34 WILD-TYPE    128     78     67    193
D1321V9, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2T34 MUTATED        0      0      2      0      2      0      1      0
  OR2T34 WILD-TYPE     40     62     26     80     67     48     42     28
                  vv
clus               CLUS_9
  OR2T34 MUTATED        1
  OR2T34 WILD-TYPE     73
D1321V10, multiclass
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T34 MUTATED        1      0      0      0
  OR2T34 WILD-TYPE     32     31     27     19
D1321V11, multiclass
[1] "Remove cluster labels:" "OR2T34 MUTATED"        
clus
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G5-6641 
"OR2T34 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2T34 MUTATED        1      0      0      0
  OR2T34 WILD-TYPE     53     10     24     22
D1321V12, multiclass
[1] "Remove cluster labels:" "OR2T34 MUTATED"        
clus
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-G5-6641 
"OR2T34 WILD-TYPE" 

Clustering(1322) Variable = POLDIP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLDIP3 MUTATED        2      0      0      2
  POLDIP3 WILD-TYPE     44     58     64     41
D1322V1, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POLDIP3 MUTATED        2      0      2
  POLDIP3 WILD-TYPE     49     83     75
D1322V2, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLDIP3 MUTATED        6      0      0      1
  POLDIP3 WILD-TYPE    172    183    101     19
D1322V3, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POLDIP3 MUTATED        0      0      2
  POLDIP3 WILD-TYPE     87     80     98
D1322V4, multiclass
[1] "Remove cluster labels:" "POLDIP3 MUTATED"       
clus
  POLDIP3 MUTATED POLDIP3 WILD-TYPE 
                2               265 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6890 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901        TCGA-AD-6963 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-2693 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-A01W 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02N 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779        TCGA-AU-6004 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4681 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407        TCGA-AZ-6598 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G5-6641 
"POLDIP3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POLDIP3 MUTATED        1      4      0
  POLDIP3 WILD-TYPE     88    156    138
D1322V5, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               0               138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POLDIP3 MUTATED        1      3      1
  POLDIP3 WILD-TYPE    181    130     71
D1322V6, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLDIP3 MUTATED        0      1      1      5
  POLDIP3 WILD-TYPE    112     95     91    181
D1322V7, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POLDIP3 MUTATED        1      0      2      0      0      0      4
  POLDIP3 WILD-TYPE     59     50     47     40     63    125     95
D1322V8, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLDIP3 MUTATED        2      0      0      5
  POLDIP3 WILD-TYPE    128     78     68    191
D1322V9, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  POLDIP3 MUTATED        0      0      1      0      5      0      0      1
  POLDIP3 WILD-TYPE     40     62     27     80     64     48     43     27
                   vv
clus                CLUS_9
  POLDIP3 MUTATED        0
  POLDIP3 WILD-TYPE     74
D1322V10, multiclass
        clus
vv       POLDIP3 MUTATED POLDIP3 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLDIP3 MUTATED        0      0      0      2
  POLDIP3 WILD-TYPE     33     31     27     17
D1322V11, multiclass
[1] "Remove cluster labels:" "POLDIP3 MUTATED"       
clus
  POLDIP3 MUTATED POLDIP3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLDIP3 MUTATED        1      0      1      0
  POLDIP3 WILD-TYPE     53     10     23     22
D1322V12, multiclass
[1] "Remove cluster labels:" "POLDIP3 MUTATED"       
clus
  POLDIP3 MUTATED POLDIP3 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" "POLDIP3 WILD-TYPE" 

Clustering(1323) Variable = PNPLA8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA8 MUTATED        3      0      0      2
  PNPLA8 WILD-TYPE     43     58     64     41
D1323V1, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA8 MUTATED        4      0      1
  PNPLA8 WILD-TYPE     47     83     76
D1323V2, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA8 MUTATED       15      1      2      1
  PNPLA8 WILD-TYPE    163    182     99     19
D1323V3, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA8 MUTATED        6      2      7
  PNPLA8 WILD-TYPE     81     78     93
D1323V4, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA8 MUTATED        1      7      7
  PNPLA8 WILD-TYPE     88    153    131
D1323V5, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              7              153
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA8 MUTATED        7      4      4
  PNPLA8 WILD-TYPE    175    129     68
D1323V6, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              4              129
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA8 MUTATED        3      5      6      5
  PNPLA8 WILD-TYPE    109     91     86    181
D1323V7, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              6               86
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNPLA8 MUTATED        4      3      4      1      3      0      4
  PNPLA8 WILD-TYPE     56     47     45     39     60    125     95
D1323V8, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA8 MUTATED        7      4      1      6
  PNPLA8 WILD-TYPE    123     74     67    190
D1323V9, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PNPLA8 MUTATED        4      5      0      2      4      1      1      0
  PNPLA8 WILD-TYPE     36     57     28     78     65     47     42     28
                  vv
clus               CLUS_9
  PNPLA8 MUTATED        1
  PNPLA8 WILD-TYPE     73
D1323V10, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              5               57
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA8 MUTATED        0      1      0      3
  PNPLA8 WILD-TYPE     33     30     27     16
D1323V11, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA8 MUTATED        3      0      1      0
  PNPLA8 WILD-TYPE     51     10     23     22
D1323V12, multiclass
        clus
vv       PNPLA8 MUTATED PNPLA8 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1324) Variable = C7ORF60 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF60 MUTATED        0      0      0      0
  C7ORF60 WILD-TYPE     46     58     64     43
D1324V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF60 MUTATED        0      0      0
  C7ORF60 WILD-TYPE     51     83     77
D1324V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF60 MUTATED        5      0      1      0
  C7ORF60 WILD-TYPE    173    183    100     20
D1324V3, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF60 MUTATED        3      2      1
  C7ORF60 WILD-TYPE     84     78     99
D1324V4, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF60 MUTATED        1      2      3
  C7ORF60 WILD-TYPE     88    158    135
D1324V5, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF60 MUTATED        4      1      1
  C7ORF60 WILD-TYPE    178    132     71
D1324V6, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF60 MUTATED        1      3      2      0
  C7ORF60 WILD-TYPE    111     93     90    186
D1324V7, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C7ORF60 MUTATED        1      2      1      1      1      0      0
  C7ORF60 WILD-TYPE     59     48     48     39     62    125     99
D1324V8, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF60 MUTATED        3      1      1      1
  C7ORF60 WILD-TYPE    127     77     67    195
D1324V9, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C7ORF60 MUTATED        0      0      1      2      0      1      1      0
  C7ORF60 WILD-TYPE     40     62     27     78     69     47     42     28
                   vv
clus                CLUS_9
  C7ORF60 MUTATED        1
  C7ORF60 WILD-TYPE     73
D1324V10, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               0                69
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF60 MUTATED        1      1      1      0
  C7ORF60 WILD-TYPE     32     30     26     19
D1324V11, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF60 MUTATED        2      0      1      0
  C7ORF60 WILD-TYPE     52     10     23     22
D1324V12, multiclass
        clus
vv       C7ORF60 MUTATED C7ORF60 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1325) Variable = SLC25A17 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        2      0      0      2
  SLC25A17 WILD-TYPE     44     58     64     41
D1325V1, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        3      0      1
  SLC25A17 WILD-TYPE     48     83     76
D1325V2, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        8      0      0      0
  SLC25A17 WILD-TYPE    170    183    101     20
D1325V3, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                8                170
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        2      0      2
  SLC25A17 WILD-TYPE     85     80     98
D1325V4, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        1      3      4
  SLC25A17 WILD-TYPE     88    157    134
D1325V5, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        4      3      1
  SLC25A17 WILD-TYPE    178    130     71
D1325V6, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        0      1      2      5
  SLC25A17 WILD-TYPE    112     95     90    181
D1325V7, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A17 MUTATED        1      0      3      0      0      0      4
  SLC25A17 WILD-TYPE     59     50     46     40     63    125     95
D1325V8, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        2      1      0      4
  SLC25A17 WILD-TYPE    128     77     68    192
D1325V9, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC25A17 MUTATED        1      2      0      0      3      0      0      0
  SLC25A17 WILD-TYPE     39     60     28     80     66     48     43     28
                    vv
clus                 CLUS_9
  SLC25A17 MUTATED        1
  SLC25A17 WILD-TYPE     73
D1325V10, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        0      0      0      2
  SLC25A17 WILD-TYPE     33     31     27     17
D1325V11, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-6548         TCGA-AD-6889 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6603 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        2      0      0      0
  SLC25A17 WILD-TYPE     52     10     24     22
D1325V12, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-6548         TCGA-AD-6889 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6603 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 

Clustering(1326) Variable = KRTAP10-11 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-11 MUTATED        0      0      0      1
  KRTAP10-11 WILD-TYPE     46     58     64     42
D1326V1, multiclass
[1] "Remove cluster labels:" "KRTAP10-11 MUTATED"    
clus
  KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE 
                   1                  210 
          TCGA-A6-2672           TCGA-A6-2674           TCGA-A6-2676 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-A6-2677           TCGA-A6-2678           TCGA-A6-2683 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-A6-3807           TCGA-A6-3808           TCGA-A6-3809 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3514           TCGA-AA-3516 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3517           TCGA-AA-3518           TCGA-AA-3519 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3520           TCGA-AA-3521           TCGA-AA-3522 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3524           TCGA-AA-3525           TCGA-AA-3526 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3527           TCGA-AA-3529           TCGA-AA-3530 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3531           TCGA-AA-3532           TCGA-AA-3534 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3538           TCGA-AA-3542           TCGA-AA-3543 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3544           TCGA-AA-3548           TCGA-AA-3549 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3552           TCGA-AA-3553           TCGA-AA-3554 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3556           TCGA-AA-3558 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3560           TCGA-AA-3561           TCGA-AA-3562 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3664           TCGA-AA-3666           TCGA-AA-3667 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3672           TCGA-AA-3673           TCGA-AA-3678 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3680           TCGA-AA-3681 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3684           TCGA-AA-3685           TCGA-AA-3688 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3692           TCGA-AA-3693           TCGA-AA-3696 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3710           TCGA-AA-3715           TCGA-AA-3811 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3812           TCGA-AA-3814           TCGA-AA-3815 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3818           TCGA-AA-3819           TCGA-AA-3821 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3831           TCGA-AA-3833           TCGA-AA-3837 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3842           TCGA-AA-3844           TCGA-AA-3845 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3850 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3851           TCGA-AA-3852           TCGA-AA-3854 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3855           TCGA-AA-3856           TCGA-AA-3858 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3860           TCGA-AA-3861           TCGA-AA-3864 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3866           TCGA-AA-3867           TCGA-AA-3869 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3870           TCGA-AA-3872           TCGA-AA-3875 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3930           TCGA-AA-3939 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3941           TCGA-AA-3947           TCGA-AA-3949 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3950           TCGA-AA-3952           TCGA-AA-3955 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3956           TCGA-AA-3966           TCGA-AA-3968 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3971           TCGA-AA-3972           TCGA-AA-3973 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3975           TCGA-AA-3976           TCGA-AA-3977 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3979           TCGA-AA-3980           TCGA-AA-3982 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3984           TCGA-AA-3986           TCGA-AA-3989 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3994           TCGA-AA-A004           TCGA-AA-A00A 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00N           TCGA-AA-A00O           TCGA-AA-A00Q 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00R           TCGA-AA-A00U           TCGA-AA-A00W 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00Z           TCGA-AA-A017           TCGA-AA-A01D 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A01F           TCGA-AA-A01G           TCGA-AA-A01I 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A01K           TCGA-AA-A01Q           TCGA-AA-A024 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A029           TCGA-AA-A02F           TCGA-AA-A02H 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A02J           TCGA-AA-A02W           TCGA-AF-2689 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AF-2691           TCGA-AF-2692           TCGA-AF-3400 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AF-3913           TCGA-AG-3574           TCGA-AG-3575 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3578           TCGA-AG-3580           TCGA-AG-3581 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3582           TCGA-AG-3583           TCGA-AG-3584 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3586           TCGA-AG-3587           TCGA-AG-3593 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3594           TCGA-AG-3598           TCGA-AG-3599 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3600           TCGA-AG-3601           TCGA-AG-3602 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3605           TCGA-AG-3608           TCGA-AG-3609 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3611           TCGA-AG-3612           TCGA-AG-3726 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3881 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3882           TCGA-AG-3883           TCGA-AG-3885 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3887           TCGA-AG-3890           TCGA-AG-3892 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3893           TCGA-AG-3894           TCGA-AG-3896 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3898           TCGA-AG-3901           TCGA-AG-3902 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3909           TCGA-AG-3999           TCGA-AG-4001 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-4005           TCGA-AG-4007           TCGA-AG-4008 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-4015           TCGA-AG-A002           TCGA-AG-A008 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A00C           TCGA-AG-A00H           TCGA-AG-A00Y 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A011           TCGA-AG-A014           TCGA-AG-A015 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A016           TCGA-AG-A01L           TCGA-AG-A025 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02X 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A032           TCGA-AY-4070           TCGA-AY-4071 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-11 MUTATED        0      1      0
  KRTAP10-11 WILD-TYPE     51     82     77
D1326V2, multiclass
[1] "Remove cluster labels:" "KRTAP10-11 MUTATED"    
clus
  KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE 
                   1                  210 
          TCGA-A6-2672           TCGA-A6-2674           TCGA-A6-2676 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-A6-2677           TCGA-A6-2678           TCGA-A6-2683 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-A6-3807           TCGA-A6-3808           TCGA-A6-3809 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3514           TCGA-AA-3516 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3517           TCGA-AA-3518           TCGA-AA-3519 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3520           TCGA-AA-3521           TCGA-AA-3522 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3524           TCGA-AA-3525           TCGA-AA-3526 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3527           TCGA-AA-3529           TCGA-AA-3530 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3531           TCGA-AA-3532           TCGA-AA-3534 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3538           TCGA-AA-3542           TCGA-AA-3543 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3544           TCGA-AA-3548           TCGA-AA-3549 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3552           TCGA-AA-3553           TCGA-AA-3554 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3556           TCGA-AA-3558 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3560           TCGA-AA-3561           TCGA-AA-3562 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3664           TCGA-AA-3666           TCGA-AA-3667 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3672           TCGA-AA-3673           TCGA-AA-3678 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3680           TCGA-AA-3681 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3684           TCGA-AA-3685           TCGA-AA-3688 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3692           TCGA-AA-3693           TCGA-AA-3696 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3710           TCGA-AA-3715           TCGA-AA-3811 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3812           TCGA-AA-3814           TCGA-AA-3815 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3818           TCGA-AA-3819           TCGA-AA-3821 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3831           TCGA-AA-3833           TCGA-AA-3837 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3842           TCGA-AA-3844           TCGA-AA-3845 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3850 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3851           TCGA-AA-3852           TCGA-AA-3854 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3855           TCGA-AA-3856           TCGA-AA-3858 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3860           TCGA-AA-3861           TCGA-AA-3864 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3866           TCGA-AA-3867           TCGA-AA-3869 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3870           TCGA-AA-3872           TCGA-AA-3875 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3930           TCGA-AA-3939 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3941           TCGA-AA-3947           TCGA-AA-3949 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3950           TCGA-AA-3952           TCGA-AA-3955 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3956           TCGA-AA-3966           TCGA-AA-3968 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3971           TCGA-AA-3972           TCGA-AA-3973 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3975           TCGA-AA-3976           TCGA-AA-3977 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3979           TCGA-AA-3980           TCGA-AA-3982 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3984           TCGA-AA-3986           TCGA-AA-3989 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-3994           TCGA-AA-A004           TCGA-AA-A00A 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00N           TCGA-AA-A00O           TCGA-AA-A00Q 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00R           TCGA-AA-A00U           TCGA-AA-A00W 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A00Z           TCGA-AA-A017           TCGA-AA-A01D 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A01F           TCGA-AA-A01G           TCGA-AA-A01I 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A01K           TCGA-AA-A01Q           TCGA-AA-A024 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A029           TCGA-AA-A02F           TCGA-AA-A02H 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AA-A02J           TCGA-AA-A02W           TCGA-AF-2689 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AF-2691           TCGA-AF-2692           TCGA-AF-3400 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AF-3913           TCGA-AG-3574           TCGA-AG-3575 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3578           TCGA-AG-3580           TCGA-AG-3581 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3582           TCGA-AG-3583           TCGA-AG-3584 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3586           TCGA-AG-3587           TCGA-AG-3593 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3594           TCGA-AG-3598           TCGA-AG-3599 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3600           TCGA-AG-3601           TCGA-AG-3602 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3605           TCGA-AG-3608           TCGA-AG-3609 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3611           TCGA-AG-3612           TCGA-AG-3726 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3881 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3882           TCGA-AG-3883           TCGA-AG-3885 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3887           TCGA-AG-3890           TCGA-AG-3892 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3893           TCGA-AG-3894           TCGA-AG-3896 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3898           TCGA-AG-3901           TCGA-AG-3902 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-3909           TCGA-AG-3999           TCGA-AG-4001 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-4005           TCGA-AG-4007           TCGA-AG-4008 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-4015           TCGA-AG-A002           TCGA-AG-A008 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A00C           TCGA-AG-A00H           TCGA-AG-A00Y 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A011           TCGA-AG-A014           TCGA-AG-A015 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A016           TCGA-AG-A01L           TCGA-AG-A025 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02X 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
          TCGA-AG-A032           TCGA-AY-4070           TCGA-AY-4071 
"KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" "KRTAP10-11 WILD-TYPE" 
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-11 MUTATED        3      3      0      0
  KRTAP10-11 WILD-TYPE    175    180    101     20
D1326V3, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  3                  175
  CLUS_2                  3                  180
  CLUS_3                  0                  101
  CLUS_4                  0                   20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-11 MUTATED        2      2      1
  KRTAP10-11 WILD-TYPE     85     78     99
D1326V4, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  2                   85
  CLUS_2                  2                   78
  CLUS_3                  1                   99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-11 MUTATED        0      1      5
  KRTAP10-11 WILD-TYPE     89    159    133
D1326V5, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  0                   89
  CLUS_2                  1                  159
  CLUS_3                  5                  133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-11 MUTATED        4      2      0
  KRTAP10-11 WILD-TYPE    178    131     72
D1326V6, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  4                  178
  CLUS_2                  2                  131
  CLUS_3                  0                   72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-11 MUTATED        3      1      1      1
  KRTAP10-11 WILD-TYPE    109     95     91    185
D1326V7, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  3                  109
  CLUS_2                  1                   95
  CLUS_3                  1                   91
  CLUS_4                  1                  185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP10-11 MUTATED        3      0      2      0      0      0      1
  KRTAP10-11 WILD-TYPE     57     50     47     40     63    125     98
D1326V8, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  3                   57
  CLUS_2                  0                   50
  CLUS_3                  2                   47
  CLUS_4                  0                   40
  CLUS_5                  0                   63
  CLUS_6                  0                  125
  CLUS_7                  1                   98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-11 MUTATED        2      1      1      2
  KRTAP10-11 WILD-TYPE    128     77     67    194
D1326V9, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  2                  128
  CLUS_2                  1                   77
  CLUS_3                  1                   67
  CLUS_4                  2                  194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRTAP10-11 MUTATED        0      1      2      1      1      1      0      0
  KRTAP10-11 WILD-TYPE     40     61     26     79     68     47     43     28
                      vv
clus                   CLUS_9
  KRTAP10-11 MUTATED        0
  KRTAP10-11 WILD-TYPE     74
D1326V10, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  0                   40
  CLUS_2                  1                   61
  CLUS_3                  2                   26
  CLUS_4                  1                   79
  CLUS_5                  1                   68
  CLUS_6                  1                   47
  CLUS_7                  0                   43
  CLUS_8                  0                   28
  CLUS_9                  0                   74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-11 MUTATED        2      0      1      0
  KRTAP10-11 WILD-TYPE     31     31     26     19
D1326V11, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  2                   31
  CLUS_2                  0                   31
  CLUS_3                  1                   26
  CLUS_4                  0                   19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-11 MUTATED        1      0      1      1
  KRTAP10-11 WILD-TYPE     53     10     23     21
D1326V12, multiclass
        clus
vv       KRTAP10-11 MUTATED KRTAP10-11 WILD-TYPE
  CLUS_1                  1                   53
  CLUS_2                  0                   10
  CLUS_3                  1                   23
  CLUS_4                  1                   21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1327) Variable = GTF3C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        5      1      0      4
  GTF3C1 WILD-TYPE     41     57     64     39
D1327V1, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C1 MUTATED        6      1      3
  GTF3C1 WILD-TYPE     45     82     74
D1327V2, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              6               45
  CLUS_2              1               82
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED       24      4      2      0
  GTF3C1 WILD-TYPE    154    179     99     20
D1327V3, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1             24              154
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C1 MUTATED        6      0     15
  GTF3C1 WILD-TYPE     81     80     85
D1327V4, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3             15               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C1 MUTATED        4      8     14
  GTF3C1 WILD-TYPE     85    152    124
D1327V5, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              8              152
  CLUS_3             14              124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C1 MUTATED       13      9      4
  GTF3C1 WILD-TYPE    169    124     68
D1327V6, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              9              124
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        0     10     10     10
  GTF3C1 WILD-TYPE    112     86     82    176
D1327V7, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2             10               86
  CLUS_3             10               82
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF3C1 MUTATED        1      4     12      2      1      2      8
  GTF3C1 WILD-TYPE     59     46     37     38     62    123     91
D1327V8, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3             12               37
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED       12      3      1     13
  GTF3C1 WILD-TYPE    118     75     67    183
D1327V9, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1             12              118
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GTF3C1 MUTATED        2      5      1      4      9      1      4      3
  GTF3C1 WILD-TYPE     38     57     27     76     60     47     39     25
                  vv
clus               CLUS_9
  GTF3C1 MUTATED        0
  GTF3C1 WILD-TYPE     74
D1327V10, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              9               60
  CLUS_6              1               47
  CLUS_7              4               39
  CLUS_8              3               25
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        2      1      0      5
  GTF3C1 WILD-TYPE     31     30     27     14
D1327V11, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        7      0      1      0
  GTF3C1 WILD-TYPE     47     10     23     22
D1327V12, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              7               47
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1328) Variable = WAC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAC MUTATED        3      0      0      1
  WAC WILD-TYPE     43     58     64     42
D1328V1, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WAC MUTATED        2      1      1
  WAC WILD-TYPE     49     82     76
D1328V2, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAC MUTATED       10      2      0      2
  WAC WILD-TYPE    168    181    101     18
D1328V3, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1          10           168
  CLUS_2           2           181
  CLUS_3           0           101
  CLUS_4           2            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WAC MUTATED        5      2      4
  WAC WILD-TYPE     82     78     96
D1328V4, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           5            82
  CLUS_2           2            78
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WAC MUTATED        3      3      4
  WAC WILD-TYPE     86    157    134
D1328V5, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           3            86
  CLUS_2           3           157
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WAC MUTATED        8      1      1
  WAC WILD-TYPE    174    132     71
D1328V6, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           8           174
  CLUS_2           1           132
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAC MUTATED        2      3      5      5
  WAC WILD-TYPE    110     93     87    181
D1328V7, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           2           110
  CLUS_2           3            93
  CLUS_3           5            87
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WAC MUTATED        0      1      3      0      5      2      4
  WAC WILD-TYPE     60     49     46     40     58    123     95
D1328V8, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           0            60
  CLUS_2           1            49
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           5            58
  CLUS_6           2           123
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAC MUTATED        2      6      0      7
  WAC WILD-TYPE    128     72     68    189
D1328V9, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           2           128
  CLUS_2           6            72
  CLUS_3           0            68
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WAC MUTATED        3      4      2      2      4      0      0      0      0
  WAC WILD-TYPE     37     58     26     78     65     48     43     28     74
D1328V10, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           3            37
  CLUS_2           4            58
  CLUS_3           2            26
  CLUS_4           2            78
  CLUS_5           4            65
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAC MUTATED        2      1      0      2
  WAC WILD-TYPE     31     30     27     17
D1328V11, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAC MUTATED        4      0      1      0
  WAC WILD-TYPE     50     10     23     22
D1328V12, multiclass
        clus
vv       WAC MUTATED WAC WILD-TYPE
  CLUS_1           4            50
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1329) Variable = NFKBIE MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIE MUTATED        0      0      0      1
  NFKBIE WILD-TYPE     46     58     64     42
D1329V1, multiclass
[1] "Remove cluster labels:" "NFKBIE MUTATED"        
clus
  NFKBIE MUTATED NFKBIE WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIE MUTATED        0      1      0
  NFKBIE WILD-TYPE     51     82     77
D1329V2, multiclass
[1] "Remove cluster labels:" "NFKBIE MUTATED"        
clus
  NFKBIE MUTATED NFKBIE WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIE MUTATED        2      2      0      0
  NFKBIE WILD-TYPE    176    181    101     20
D1329V3, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              2              176
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIE MUTATED        1      2      0
  NFKBIE WILD-TYPE     86     78    100
D1329V4, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIE MUTATED        0      3      1
  NFKBIE WILD-TYPE     89    157    137
D1329V5, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIE MUTATED        1      2      1
  NFKBIE WILD-TYPE    181    131     71
D1329V6, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIE MUTATED        2      0      1      1
  NFKBIE WILD-TYPE    110     96     91    185
D1329V7, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              2              110
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFKBIE MUTATED        1      0      0      1      1      0      1
  NFKBIE WILD-TYPE     59     50     49     39     62    125     98
D1329V8, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIE MUTATED        1      1      1      1
  NFKBIE WILD-TYPE    129     77     67    195
D1329V9, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NFKBIE MUTATED        1      1      1      0      0      0      1      0
  NFKBIE WILD-TYPE     39     61     27     80     69     48     42     28
                  vv
clus               CLUS_9
  NFKBIE MUTATED        0
  NFKBIE WILD-TYPE     74
D1329V10, multiclass
        clus
vv       NFKBIE MUTATED NFKBIE WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIE MUTATED        0      0      1      0
  NFKBIE WILD-TYPE     33     31     26     19
D1329V11, multiclass
[1] "Remove cluster labels:" "NFKBIE MUTATED"        
clus
  NFKBIE MUTATED NFKBIE WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-G5-6641 
"NFKBIE WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIE MUTATED        0      0      1      0
  NFKBIE WILD-TYPE     54     10     23     22
D1329V12, multiclass
[1] "Remove cluster labels:" "NFKBIE MUTATED"        
clus
  NFKBIE MUTATED NFKBIE WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" "NFKBIE WILD-TYPE" 
      TCGA-G5-6641 
"NFKBIE WILD-TYPE" 

Clustering(1330) Variable = RRM2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRM2B MUTATED        0      0      0      0
  RRM2B WILD-TYPE     46     58     64     43
D1330V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRM2B MUTATED        0      0      0
  RRM2B WILD-TYPE     51     83     77
D1330V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRM2B MUTATED        4      0      1      0
  RRM2B WILD-TYPE    174    183    100     20
D1330V3, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRM2B MUTATED        2      2      1
  RRM2B WILD-TYPE     85     78     99
D1330V4, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRM2B MUTATED        0      4      1
  RRM2B WILD-TYPE     89    156    137
D1330V5, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRM2B MUTATED        2      3      0
  RRM2B WILD-TYPE    180    130     72
D1330V6, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRM2B MUTATED        2      1      1      1
  RRM2B WILD-TYPE    110     95     91    185
D1330V7, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RRM2B MUTATED        2      0      2      0      0      0      1
  RRM2B WILD-TYPE     58     50     47     40     63    125     98
D1330V8, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRM2B MUTATED        2      1      1      1
  RRM2B WILD-TYPE    128     77     67    195
D1330V9, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RRM2B MUTATED        2      1      1      0      0      0      0      0
  RRM2B WILD-TYPE     38     61     27     80     69     48     43     28
                 vv
clus              CLUS_9
  RRM2B MUTATED        1
  RRM2B WILD-TYPE     73
D1330V10, multiclass
        clus
vv       RRM2B MUTATED RRM2B WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRM2B MUTATED        0      0      0      1
  RRM2B WILD-TYPE     33     31     27     18
D1330V11, multiclass
[1] "Remove cluster labels:" "RRM2B MUTATED"         
clus
  RRM2B MUTATED RRM2B WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-G5-6641 
"RRM2B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRM2B MUTATED        1      0      0      0
  RRM2B WILD-TYPE     53     10     24     22
D1330V12, multiclass
[1] "Remove cluster labels:" "RRM2B MUTATED"         
clus
  RRM2B MUTATED RRM2B WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" "RRM2B WILD-TYPE" 
     TCGA-G5-6641 
"RRM2B WILD-TYPE" 

Clustering(1331) Variable = KRTAP20-1 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP20-1 MUTATED        0      0      0      0
  KRTAP20-1 WILD-TYPE     46     58     64     43
D1331V1, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP20-1 MUTATED        0      0      0
  KRTAP20-1 WILD-TYPE     51     83     77
D1331V2, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP20-1 MUTATED        1      0      2      0
  KRTAP20-1 WILD-TYPE    177    183     99     20
D1331V3, multiclass
        clus
vv       KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE
  CLUS_1                 1                 177
  CLUS_2                 0                 183
  CLUS_3                 2                  99
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP20-1 MUTATED        1      1      1
  KRTAP20-1 WILD-TYPE     86     79     99
D1331V4, multiclass
        clus
vv       KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE
  CLUS_1                 1                  86
  CLUS_2                 1                  79
  CLUS_3                 1                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP20-1 MUTATED        0      2      0
  KRTAP20-1 WILD-TYPE     89    158    138
D1331V5, multiclass
[1] "Remove cluster labels:" "KRTAP20-1 MUTATED"     
clus
  KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE 
                  2                 385 
         TCGA-A6-2671          TCGA-A6-2672          TCGA-A6-2676 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-3810          TCGA-A6-5656          TCGA-A6-5657 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-5659          TCGA-A6-5660          TCGA-A6-5661 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-5662          TCGA-A6-5664          TCGA-A6-5665 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-5666          TCGA-A6-6138          TCGA-A6-6141 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6142          TCGA-A6-6648          TCGA-A6-6649 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6652          TCGA-A6-6653 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6654          TCGA-A6-6780          TCGA-A6-6781 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6782          TCGA-AA-3489          TCGA-AA-3492 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3496          TCGA-AA-3502          TCGA-AA-3510 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AA-3514          TCGA-AA-3517 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3519          TCGA-AA-3520          TCGA-AA-3521 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3522          TCGA-AA-3525          TCGA-AA-3529 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3530          TCGA-AA-3531          TCGA-AA-3532 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3534          TCGA-AA-3548          TCGA-AA-3552 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3553          TCGA-AA-3554          TCGA-AA-3555 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3558          TCGA-AA-3560          TCGA-AA-3561 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3562          TCGA-AA-3655          TCGA-AA-3664 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3678          TCGA-AA-3681 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3688          TCGA-AA-3695          TCGA-AA-3696 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3697          TCGA-AA-3710          TCGA-AA-3712 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3713          TCGA-AA-3715          TCGA-AA-3811 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3831 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3833          TCGA-AA-3837          TCGA-AA-3844 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3845          TCGA-AA-3848          TCGA-AA-3850 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3852          TCGA-AA-3854          TCGA-AA-3856 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3861          TCGA-AA-3864          TCGA-AA-3866 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3869          TCGA-AA-3872          TCGA-AA-3930 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3950          TCGA-AA-3955 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3968          TCGA-AA-3971          TCGA-AA-3972 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3973          TCGA-AA-3975          TCGA-AA-3982 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-A004 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00A          TCGA-AA-A00E          TCGA-AA-A00F 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00Q          TCGA-AA-A00R 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01I          TCGA-AA-A01K 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01P          TCGA-AA-A01Q          TCGA-AA-A01R 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01S          TCGA-AA-A01T          TCGA-AA-A01V 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01X          TCGA-AA-A022          TCGA-AA-A024 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02K          TCGA-AA-A02O 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AD-5900          TCGA-AD-6548 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6899          TCGA-AD-6965 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-3400          TCGA-AF-3913 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-5654          TCGA-AF-6136          TCGA-AF-6655 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-6672          TCGA-AG-3574          TCGA-AG-3578 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3612          TCGA-AG-3727 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3742          TCGA-AG-3878 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3885 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3896          TCGA-AG-3898 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-4001 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A002          TCGA-AG-A008 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01W          TCGA-AG-A01Y 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A026          TCGA-AG-A02G 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A036 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AH-6544          TCGA-AH-6547          TCGA-AH-6549 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AH-6643          TCGA-AH-6644          TCGA-AU-6004 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AY-5543          TCGA-AY-6196          TCGA-AY-6197 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AY-6386          TCGA-AZ-4315          TCGA-AZ-4323 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-4616          TCGA-AZ-4682          TCGA-AZ-5407 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6599          TCGA-AZ-6600 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6606          TCGA-AZ-6607          TCGA-AZ-6608 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-5254          TCGA-CA-5255          TCGA-CA-5796 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-5797          TCGA-CA-6715          TCGA-CA-6716 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-6717          TCGA-CA-6718          TCGA-CA-6719 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CI-6621          TCGA-CK-5914          TCGA-CK-5916 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CK-6746          TCGA-CK-6747          TCGA-CK-6748 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CK-6751          TCGA-CL-5918          TCGA-CM-4743 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-4744          TCGA-CM-4746          TCGA-CM-4747 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-4752          TCGA-CM-5341          TCGA-CM-5344 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5348          TCGA-CM-5349          TCGA-CM-5860 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5861          TCGA-CM-5862          TCGA-CM-5863 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5864          TCGA-CM-5868          TCGA-CM-6161 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6162          TCGA-CM-6163          TCGA-CM-6164 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6165          TCGA-CM-6166          TCGA-CM-6167 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6168          TCGA-CM-6169          TCGA-CM-6170 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6171          TCGA-CM-6172          TCGA-CM-6674 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6675          TCGA-CM-6676          TCGA-CM-6677 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-5538          TCGA-D5-5539          TCGA-D5-5540 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-5541          TCGA-D5-6529          TCGA-D5-6532 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6535 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6537          TCGA-D5-6538 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6539          TCGA-D5-6540          TCGA-D5-6541 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6898          TCGA-D5-6920          TCGA-D5-6922 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6923          TCGA-D5-6924          TCGA-D5-6926 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6927          TCGA-D5-6928          TCGA-D5-6930 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6931          TCGA-D5-6932          TCGA-DC-5337 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6155          TCGA-DC-6157 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6160          TCGA-DC-6681 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-6682          TCGA-DC-6683          TCGA-DM-A0X9 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A0XF          TCGA-DM-A1D0          TCGA-DM-A1D4 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1D6          TCGA-DM-A1D7          TCGA-DM-A1D8 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1DB 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A1HB          TCGA-DM-A282 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A28C          TCGA-DM-A28E          TCGA-DM-A28F 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A28G          TCGA-DT-5265          TCGA-DY-A0XA 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DF 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EF-5830 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-EI-6508 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6703          TCGA-F4-6704 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6806          TCGA-F4-6807 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F4-6854 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6855          TCGA-F4-6856          TCGA-F5-6464 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-F5-6813 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6293          TCGA-G4-6299          TCGA-G4-6303 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6304          TCGA-G4-6306          TCGA-G4-6307 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6309          TCGA-G4-6310          TCGA-G4-6315 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6317          TCGA-G4-6321          TCGA-G4-6323 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6586          TCGA-G4-6588          TCGA-G4-6625 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6626          TCGA-G4-6628          TCGA-G5-6235 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G5-6641 
"KRTAP20-1 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP20-1 MUTATED        1      0      1
  KRTAP20-1 WILD-TYPE    181    133     71
D1331V6, multiclass
[1] "Remove cluster labels:" "KRTAP20-1 MUTATED"     
clus
  KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE 
                  2                 385 
         TCGA-A6-2671          TCGA-A6-2672          TCGA-A6-2676 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-3810          TCGA-A6-5656          TCGA-A6-5657 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-5659          TCGA-A6-5660          TCGA-A6-5661 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-5662          TCGA-A6-5664          TCGA-A6-5665 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-5666          TCGA-A6-6138          TCGA-A6-6141 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6142          TCGA-A6-6648          TCGA-A6-6649 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6652          TCGA-A6-6653 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6654          TCGA-A6-6780          TCGA-A6-6781 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6782          TCGA-AA-3489          TCGA-AA-3492 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3496          TCGA-AA-3502          TCGA-AA-3510 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AA-3514          TCGA-AA-3517 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3519          TCGA-AA-3520          TCGA-AA-3521 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3522          TCGA-AA-3525          TCGA-AA-3529 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3530          TCGA-AA-3531          TCGA-AA-3532 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3534          TCGA-AA-3548          TCGA-AA-3552 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3553          TCGA-AA-3554          TCGA-AA-3555 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3558          TCGA-AA-3560          TCGA-AA-3561 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3562          TCGA-AA-3655          TCGA-AA-3664 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3678          TCGA-AA-3681 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3688          TCGA-AA-3695          TCGA-AA-3696 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3697          TCGA-AA-3710          TCGA-AA-3712 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3713          TCGA-AA-3715          TCGA-AA-3811 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3831 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3833          TCGA-AA-3837          TCGA-AA-3844 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3845          TCGA-AA-3848          TCGA-AA-3850 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3852          TCGA-AA-3854          TCGA-AA-3856 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3861          TCGA-AA-3864          TCGA-AA-3866 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3869          TCGA-AA-3872          TCGA-AA-3930 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3950          TCGA-AA-3955 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3968          TCGA-AA-3971          TCGA-AA-3972 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3973          TCGA-AA-3975          TCGA-AA-3982 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-A004 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00A          TCGA-AA-A00E          TCGA-AA-A00F 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00Q          TCGA-AA-A00R 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01I          TCGA-AA-A01K 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01P          TCGA-AA-A01Q          TCGA-AA-A01R 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01S          TCGA-AA-A01T          TCGA-AA-A01V 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A01X          TCGA-AA-A022          TCGA-AA-A024 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02K          TCGA-AA-A02O 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AD-5900          TCGA-AD-6548 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6899          TCGA-AD-6965 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-3400          TCGA-AF-3913 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-5654          TCGA-AF-6136          TCGA-AF-6655 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-6672          TCGA-AG-3574          TCGA-AG-3578 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3612          TCGA-AG-3727 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3742          TCGA-AG-3878 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3885 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3896          TCGA-AG-3898 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-4001 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A002          TCGA-AG-A008 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01W          TCGA-AG-A01Y 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A026          TCGA-AG-A02G 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A036 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AH-6544          TCGA-AH-6547          TCGA-AH-6549 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AH-6643          TCGA-AH-6644          TCGA-AU-6004 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AY-5543          TCGA-AY-6196          TCGA-AY-6197 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AY-6386          TCGA-AZ-4315          TCGA-AZ-4323 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-4616          TCGA-AZ-4682          TCGA-AZ-5407 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6599          TCGA-AZ-6600 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6606          TCGA-AZ-6607          TCGA-AZ-6608 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-5254          TCGA-CA-5255          TCGA-CA-5796 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-5797          TCGA-CA-6715          TCGA-CA-6716 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-6717          TCGA-CA-6718          TCGA-CA-6719 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CI-6621          TCGA-CK-5914          TCGA-CK-5916 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CK-6746          TCGA-CK-6747          TCGA-CK-6748 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CK-6751          TCGA-CL-5918          TCGA-CM-4743 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-4744          TCGA-CM-4746          TCGA-CM-4747 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-4752          TCGA-CM-5341          TCGA-CM-5344 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5348          TCGA-CM-5349          TCGA-CM-5860 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5861          TCGA-CM-5862          TCGA-CM-5863 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5864          TCGA-CM-5868          TCGA-CM-6161 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6162          TCGA-CM-6163          TCGA-CM-6164 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6165          TCGA-CM-6166          TCGA-CM-6167 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6168          TCGA-CM-6169          TCGA-CM-6170 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6171          TCGA-CM-6172          TCGA-CM-6674 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6675          TCGA-CM-6676          TCGA-CM-6677 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-5538          TCGA-D5-5539          TCGA-D5-5540 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-5541          TCGA-D5-6529          TCGA-D5-6532 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6535 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6537          TCGA-D5-6538 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6539          TCGA-D5-6540          TCGA-D5-6541 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6898          TCGA-D5-6920          TCGA-D5-6922 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6923          TCGA-D5-6924          TCGA-D5-6926 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6927          TCGA-D5-6928          TCGA-D5-6930 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6931          TCGA-D5-6932          TCGA-DC-5337 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6155          TCGA-DC-6157 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6160          TCGA-DC-6681 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-6682          TCGA-DC-6683          TCGA-DM-A0X9 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A0XF          TCGA-DM-A1D0          TCGA-DM-A1D4 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1D6          TCGA-DM-A1D7          TCGA-DM-A1D8 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1DB 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A1HB          TCGA-DM-A282 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A28C          TCGA-DM-A28E          TCGA-DM-A28F 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A28G          TCGA-DT-5265          TCGA-DY-A0XA 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DF 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EF-5830 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-EI-6508 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6703          TCGA-F4-6704 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6806          TCGA-F4-6807 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F4-6854 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6855          TCGA-F4-6856          TCGA-F5-6464 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-F5-6813 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6293          TCGA-G4-6299          TCGA-G4-6303 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6304          TCGA-G4-6306          TCGA-G4-6307 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6309          TCGA-G4-6310          TCGA-G4-6315 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6317          TCGA-G4-6321          TCGA-G4-6323 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6586          TCGA-G4-6588          TCGA-G4-6625 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6626          TCGA-G4-6628          TCGA-G5-6235 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G5-6641 
"KRTAP20-1 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP20-1 MUTATED        1      2      0      0
  KRTAP20-1 WILD-TYPE    111     94     92    186
D1331V7, multiclass
        clus
vv       KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 2                  94
  CLUS_3                 0                  92
  CLUS_4                 0                 186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP20-1 MUTATED        1      1      0      1      0      0      0
  KRTAP20-1 WILD-TYPE     59     49     49     39     63    125     99
D1331V8, multiclass
        clus
vv       KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 1                  49
  CLUS_3                 0                  49
  CLUS_4                 1                  39
  CLUS_5                 0                  63
  CLUS_6                 0                 125
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP20-1 MUTATED        2      0      1      0
  KRTAP20-1 WILD-TYPE    128     78     67    196
D1331V9, multiclass
        clus
vv       KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE
  CLUS_1                 2                 128
  CLUS_2                 0                  78
  CLUS_3                 1                  67
  CLUS_4                 0                 196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRTAP20-1 MUTATED        0      0      1      0      0      1      1      0
  KRTAP20-1 WILD-TYPE     40     62     27     80     69     47     42     28
                     vv
clus                  CLUS_9
  KRTAP20-1 MUTATED        0
  KRTAP20-1 WILD-TYPE     74
D1331V10, multiclass
        clus
vv       KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 0                  62
  CLUS_3                 1                  27
  CLUS_4                 0                  80
  CLUS_5                 0                  69
  CLUS_6                 1                  47
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP20-1 MUTATED        0      0      1      0
  KRTAP20-1 WILD-TYPE     33     31     26     19
D1331V11, multiclass
[1] "Remove cluster labels:" "KRTAP20-1 MUTATED"     
clus
  KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6138          TCGA-A6-6141 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6142          TCGA-A6-6649          TCGA-A6-6651 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6653          TCGA-A6-6654          TCGA-A6-6781 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6782          TCGA-AA-3489          TCGA-AA-3511 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-5900          TCGA-AD-6548          TCGA-AD-6889 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-6901          TCGA-AD-6963          TCGA-AD-6964 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1HA          TCGA-DM-A282 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28F          TCGA-DY-A1DC 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G5-6641 
"KRTAP20-1 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP20-1 MUTATED        0      0      1      0
  KRTAP20-1 WILD-TYPE     54     10     23     22
D1331V12, multiclass
[1] "Remove cluster labels:" "KRTAP20-1 MUTATED"     
clus
  KRTAP20-1 MUTATED KRTAP20-1 WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6138          TCGA-A6-6141 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6142          TCGA-A6-6649          TCGA-A6-6651 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6653          TCGA-A6-6654          TCGA-A6-6781 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-A6-6782          TCGA-AA-3489          TCGA-AA-3511 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-5900          TCGA-AD-6548          TCGA-AD-6889 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-6901          TCGA-AD-6963          TCGA-AD-6964 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6682          TCGA-DC-6683 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A0XD          TCGA-DM-A0XF          TCGA-DM-A1D0 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1HA          TCGA-DM-A282 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28F          TCGA-DY-A1DC 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DG          TCGA-DY-A1H8 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-F4-6459 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6460          TCGA-F4-6569          TCGA-F4-6570 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6807 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F5-6464 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-G4-6299 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" "KRTAP20-1 WILD-TYPE" 
         TCGA-G5-6641 
"KRTAP20-1 WILD-TYPE" 

Clustering(1332) Variable = TAF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        1      0      0      3
  TAF6 WILD-TYPE     45     58     64     40
D1332V1, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        3      0      1
  TAF6 WILD-TYPE     48     83     76
D1332V2, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        6      1      3      0
  TAF6 WILD-TYPE    172    182     98     20
D1332V3, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        1      3      2
  TAF6 WILD-TYPE     86     77     98
D1332V4, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        0      2      6
  TAF6 WILD-TYPE     89    158    132
D1332V5, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        6      0      2
  TAF6 WILD-TYPE    176    133     70
D1332V6, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        4      1      2      3
  TAF6 WILD-TYPE    108     95     90    183
D1332V7, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAF6 MUTATED        3      0      2      1      1      0      3
  TAF6 WILD-TYPE     57     50     47     39     62    125     96
D1332V8, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        4      1      2      2
  TAF6 WILD-TYPE    126     77     66    194
D1332V9, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TAF6 MUTATED        0      1      1      1      3      2      1      0      0
  TAF6 WILD-TYPE     40     61     27     79     66     46     42     28     74
D1332V10, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        0      1      0      1
  TAF6 WILD-TYPE     33     30     27     18
D1332V11, multiclass
[1] "Remove cluster labels:" "TAF6 MUTATED"          
clus
  TAF6 MUTATED TAF6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        1      0      0      1
  TAF6 WILD-TYPE     53     10     24     21
D1332V12, multiclass
[1] "Remove cluster labels:" "TAF6 MUTATED"          
clus
  TAF6 MUTATED TAF6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" "TAF6 WILD-TYPE" 

Clustering(1333) Variable = URGCP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  URGCP MUTATED        2      0      0      1
  URGCP WILD-TYPE     44     58     64     42
D1333V1, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  URGCP MUTATED        2      0      1
  URGCP WILD-TYPE     49     83     76
D1333V2, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  URGCP MUTATED       14      3      1      0
  URGCP WILD-TYPE    164    180    100     20
D1333V3, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1            14             164
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  URGCP MUTATED       10      1      4
  URGCP WILD-TYPE     77     79     96
D1333V4, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1            10              77
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  URGCP MUTATED        2      8      6
  URGCP WILD-TYPE     87    152    132
D1333V5, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             2              87
  CLUS_2             8             152
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  URGCP MUTATED        6      5      5
  URGCP WILD-TYPE    176    128     67
D1333V6, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  URGCP MUTATED        3      5      7      3
  URGCP WILD-TYPE    109     91     85    183
D1333V7, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  URGCP MUTATED        2      3      6      0      5      0      2
  URGCP WILD-TYPE     58     47     43     40     58    125     97
D1333V8, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             5              58
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  URGCP MUTATED        5      6      1      6
  URGCP WILD-TYPE    125     72     67    190
D1333V9, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             5             125
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  URGCP MUTATED        3      5      1      2      5      1      0      0
  URGCP WILD-TYPE     37     57     27     78     64     47     43     28
                 vv
clus              CLUS_9
  URGCP MUTATED        1
  URGCP WILD-TYPE     73
D1333V10, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  URGCP MUTATED        1      1      1      4
  URGCP WILD-TYPE     32     30     26     15
D1333V11, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  URGCP MUTATED        4      1      2      0
  URGCP WILD-TYPE     50      9     22     22
D1333V12, multiclass
        clus
vv       URGCP MUTATED URGCP WILD-TYPE
  CLUS_1             4              50
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1334) Variable = CHRNA3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA3 MUTATED        1      0      0      0
  CHRNA3 WILD-TYPE     45     58     64     43
D1334V1, multiclass
[1] "Remove cluster labels:" "CHRNA3 MUTATED"        
clus
  CHRNA3 MUTATED CHRNA3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA3 MUTATED        1      0      0
  CHRNA3 WILD-TYPE     50     83     77
D1334V2, multiclass
[1] "Remove cluster labels:" "CHRNA3 MUTATED"        
clus
  CHRNA3 MUTATED CHRNA3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CHRNA3 WILD-TYPE" "CHRNA3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA3 MUTATED        6      2      2      1
  CHRNA3 WILD-TYPE    172    181     99     19
D1334V3, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA3 MUTATED        5      1      4
  CHRNA3 WILD-TYPE     82     79     96
D1334V4, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA3 MUTATED        3      2      4
  CHRNA3 WILD-TYPE     86    158    134
D1334V5, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNA3 MUTATED        5      1      3
  CHRNA3 WILD-TYPE    177    132     69
D1334V6, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              1              132
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA3 MUTATED        2      5      3      1
  CHRNA3 WILD-TYPE    110     91     89    185
D1334V7, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHRNA3 MUTATED        1      1      5      1      2      0      1
  CHRNA3 WILD-TYPE     59     49     44     39     61    125     98
D1334V8, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA3 MUTATED        8      2      0      1
  CHRNA3 WILD-TYPE    122     76     68    195
D1334V9, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHRNA3 MUTATED        1      2      2      2      3      1      0      0
  CHRNA3 WILD-TYPE     39     60     26     78     66     47     43     28
                  vv
clus               CLUS_9
  CHRNA3 MUTATED        0
  CHRNA3 WILD-TYPE     74
D1334V10, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA3 MUTATED        2      0      1      2
  CHRNA3 WILD-TYPE     31     31     26     17
D1334V11, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNA3 MUTATED        2      0      3      0
  CHRNA3 WILD-TYPE     52     10     21     22
D1334V12, multiclass
        clus
vv       CHRNA3 MUTATED CHRNA3 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1335) Variable = RUNX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        3      0      0      1
  RUNX2 WILD-TYPE     43     58     64     42
D1335V1, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        3      1      0
  RUNX2 WILD-TYPE     48     82     77
D1335V2, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        9      0      0      0
  RUNX2 WILD-TYPE    169    183    101     20
D1335V3, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      0      4
  RUNX2 WILD-TYPE     85     80     96
D1335V4, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      5
  RUNX2 WILD-TYPE     87    159    133
D1335V5, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        5      0      3
  RUNX2 WILD-TYPE    177    133     69
D1335V6, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             0             133
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        0      0      5      4
  RUNX2 WILD-TYPE    112     96     87    182
D1335V7, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX2 MUTATED        0      0      5      0      0      1      3
  RUNX2 WILD-TYPE     60     50     44     40     63    124     96
D1335V8, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        4      0      0      5
  RUNX2 WILD-TYPE    126     78     68    191
D1335V9, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RUNX2 MUTATED        0      3      0      2      4      0      0      0
  RUNX2 WILD-TYPE     40     59     28     78     65     48     43     28
                 vv
clus              CLUS_9
  RUNX2 MUTATED        0
  RUNX2 WILD-TYPE     74
D1335V10, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        0      0      0      4
  RUNX2 WILD-TYPE     33     31     27     15
D1335V11, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        3      0      1      0
  RUNX2 WILD-TYPE     51     10     23     22
D1335V12, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1336) Variable = ZNF354C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF354C MUTATED        4      0      0      3
  ZNF354C WILD-TYPE     42     58     64     40
D1336V1, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF354C MUTATED        5      1      1
  ZNF354C WILD-TYPE     46     82     76
D1336V2, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               5                46
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF354C MUTATED       13      4      1      0
  ZNF354C WILD-TYPE    165    179    100     20
D1336V3, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1              13               165
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF354C MUTATED        7      2      3
  ZNF354C WILD-TYPE     80     78     97
D1336V4, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               7                80
  CLUS_2               2                78
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF354C MUTATED        3      5      7
  ZNF354C WILD-TYPE     86    155    131
D1336V5, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               3                86
  CLUS_2               5               155
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF354C MUTATED        7      4      4
  ZNF354C WILD-TYPE    175    129     68
D1336V6, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               7               175
  CLUS_2               4               129
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF354C MUTATED        3      3      6      6
  ZNF354C WILD-TYPE    109     93     86    180
D1336V7, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               6                86
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF354C MUTATED        4      1      3      1      3      1      5
  ZNF354C WILD-TYPE     56     49     46     39     60    124     94
D1336V8, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               4                56
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF354C MUTATED        3      4      2      8
  ZNF354C WILD-TYPE    127     74     66    188
D1336V9, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               3               127
  CLUS_2               4                74
  CLUS_3               2                66
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF354C MUTATED        0      4      0      0      6      2      2      2
  ZNF354C WILD-TYPE     40     58     28     80     63     46     41     26
                   vv
clus                CLUS_9
  ZNF354C MUTATED        1
  ZNF354C WILD-TYPE     73
D1336V10, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                58
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               6                63
  CLUS_6               2                46
  CLUS_7               2                41
  CLUS_8               2                26
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF354C MUTATED        1      1      1      3
  ZNF354C WILD-TYPE     32     30     26     16
D1336V11, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF354C MUTATED        2      0      3      1
  ZNF354C WILD-TYPE     52     10     21     21
D1336V12, multiclass
        clus
vv       ZNF354C MUTATED ZNF354C WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1337) Variable = PACS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS2 MUTATED        0      0      0      0
  PACS2 WILD-TYPE     46     58     64     43
D1337V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS2 MUTATED        0      0      0
  PACS2 WILD-TYPE     51     83     77
D1337V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS2 MUTATED        5      0      0      0
  PACS2 WILD-TYPE    173    183    101     20
D1337V3, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS2 MUTATED        1      0      4
  PACS2 WILD-TYPE     86     80     96
D1337V4, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS2 MUTATED        1      1      2
  PACS2 WILD-TYPE     88    159    136
D1337V5, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PACS2 MUTATED        3      1      0
  PACS2 WILD-TYPE    179    132     72
D1337V6, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS2 MUTATED        0      2      3      0
  PACS2 WILD-TYPE    112     94     89    186
D1337V7, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PACS2 MUTATED        0      1      4      0      0      0      0
  PACS2 WILD-TYPE     60     49     45     40     63    125     99
D1337V8, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS2 MUTATED        4      1      0      0
  PACS2 WILD-TYPE    126     77     68    196
D1337V9, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PACS2 MUTATED        1      2      0      0      2      0      0      0
  PACS2 WILD-TYPE     39     60     28     80     67     48     43     28
                 vv
clus              CLUS_9
  PACS2 MUTATED        0
  PACS2 WILD-TYPE     74
D1337V10, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS2 MUTATED        1      0      0      2
  PACS2 WILD-TYPE     32     31     27     17
D1337V11, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PACS2 MUTATED        3      0      0      0
  PACS2 WILD-TYPE     51     10     24     22
D1337V12, multiclass
        clus
vv       PACS2 MUTATED PACS2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1338) Variable = HIF3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF3A MUTATED        3      0      0      2
  HIF3A WILD-TYPE     43     58     64     41
D1338V1, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF3A MUTATED        4      1      0
  HIF3A WILD-TYPE     47     82     77
D1338V2, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF3A MUTATED       14      0      1      0
  HIF3A WILD-TYPE    164    183    100     20
D1338V3, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1            14             164
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF3A MUTATED        3      0      6
  HIF3A WILD-TYPE     84     80     94
D1338V4, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF3A MUTATED        1      5      6
  HIF3A WILD-TYPE     88    155    132
D1338V5, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF3A MUTATED        7      5      0
  HIF3A WILD-TYPE    175    128     72
D1338V6, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             7             175
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF3A MUTATED        0      5      4      6
  HIF3A WILD-TYPE    112     91     88    180
D1338V7, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIF3A MUTATED        0      1      7      0      1      0      6
  HIF3A WILD-TYPE     60     49     42     40     62    125     93
D1338V8, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF3A MUTATED        5      2      0      7
  HIF3A WILD-TYPE    125     76     68    189
D1338V9, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIF3A MUTATED        1      2      2      1      5      0      1      2
  HIF3A WILD-TYPE     39     60     26     79     64     48     42     26
                 vv
clus              CLUS_9
  HIF3A MUTATED        0
  HIF3A WILD-TYPE     74
D1338V10, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF3A MUTATED        1      0      0      4
  HIF3A WILD-TYPE     32     31     27     15
D1338V11, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF3A MUTATED        3      0      2      0
  HIF3A WILD-TYPE     51     10     22     22
D1338V12, multiclass
        clus
vv       HIF3A MUTATED HIF3A WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1339) Variable = ADH7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH7 MUTATED        0      0      0      3
  ADH7 WILD-TYPE     46     58     64     40
D1339V1, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ADH7 MUTATED        1      1      1
  ADH7 WILD-TYPE     50     82     76
D1339V2, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH7 MUTATED        6      0      0      0
  ADH7 WILD-TYPE    172    183    101     20
D1339V3, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ADH7 MUTATED        1      1      2
  ADH7 WILD-TYPE     86     79     98
D1339V4, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ADH7 MUTATED        0      6      1
  ADH7 WILD-TYPE     89    154    137
D1339V5, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ADH7 MUTATED        3      2      2
  ADH7 WILD-TYPE    179    131     70
D1339V6, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH7 MUTATED        2      3      0      2
  ADH7 WILD-TYPE    110     93     92    184
D1339V7, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADH7 MUTATED        2      1      1      0      0      0      3
  ADH7 WILD-TYPE     58     49     48     40     63    125     96
D1339V8, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH7 MUTATED        2      1      0      4
  ADH7 WILD-TYPE    128     77     68    192
D1339V9, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ADH7 MUTATED        0      1      2      0      1      2      0      0      1
  ADH7 WILD-TYPE     40     61     26     80     68     46     43     28     73
D1339V10, multiclass
        clus
vv       ADH7 MUTATED ADH7 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH7 MUTATED        0      0      0      0
  ADH7 WILD-TYPE     33     31     27     19
D1339V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADH7 MUTATED        0      0      0      0
  ADH7 WILD-TYPE     54     10     24     22
D1339V12, multiclass

Clustering(1340) Variable = RYR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       11      6      4      6
  RYR2 WILD-TYPE     35     52     60     37
D1340V1, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           11             35
  CLUS_2            6             52
  CLUS_3            4             60
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       12     10      5
  RYR2 WILD-TYPE     39     73     72
D1340V2, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           12             39
  CLUS_2           10             73
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       54     23     21      4
  RYR2 WILD-TYPE    124    160     80     16
D1340V3, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           54            124
  CLUS_2           23            160
  CLUS_3           21             80
  CLUS_4            4             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       20     19     35
  RYR2 WILD-TYPE     67     61     65
D1340V4, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           20             67
  CLUS_2           19             61
  CLUS_3           35             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       15     26     41
  RYR2 WILD-TYPE     74    134     97
D1340V5, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           15             74
  CLUS_2           26            134
  CLUS_3           41             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       41     24     17
  RYR2 WILD-TYPE    141    109     55
D1340V6, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           41            141
  CLUS_2           24            109
  CLUS_3           17             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       22     32     19     31
  RYR2 WILD-TYPE     90     64     73    155
D1340V7, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           22             90
  CLUS_2           32             64
  CLUS_3           19             73
  CLUS_4           31            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RYR2 MUTATED       13     15     20     14     10     11     21
  RYR2 WILD-TYPE     47     35     29     26     53    114     78
D1340V8, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           13             47
  CLUS_2           15             35
  CLUS_3           20             29
  CLUS_4           14             26
  CLUS_5           10             53
  CLUS_6           11            114
  CLUS_7           21             78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       35     12     21     34
  RYR2 WILD-TYPE     95     66     47    162
D1340V9, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           35             95
  CLUS_2           12             66
  CLUS_3           21             47
  CLUS_4           34            162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RYR2 MUTATED       10     13      7     14     23      5     14      4     12
  RYR2 WILD-TYPE     30     49     21     66     46     43     29     24     62
D1340V10, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           10             30
  CLUS_2           13             49
  CLUS_3            7             21
  CLUS_4           14             66
  CLUS_5           23             46
  CLUS_6            5             43
  CLUS_7           14             29
  CLUS_8            4             24
  CLUS_9           12             62
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       10      7      9      9
  RYR2 WILD-TYPE     23     24     18     10
D1340V11, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           10             23
  CLUS_2            7             24
  CLUS_3            9             18
  CLUS_4            9             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       15      2     11      7
  RYR2 WILD-TYPE     39      8     13     15
D1340V12, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           15             39
  CLUS_2            2              8
  CLUS_3           11             13
  CLUS_4            7             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1341) Variable = DACT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DACT1 MUTATED        2      0      0      2
  DACT1 WILD-TYPE     44     58     64     41
D1341V1, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DACT1 MUTATED        2      1      1
  DACT1 WILD-TYPE     49     82     76
D1341V2, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DACT1 MUTATED       13      0      2      0
  DACT1 WILD-TYPE    165    183     99     20
D1341V3, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DACT1 MUTATED        4      0      6
  DACT1 WILD-TYPE     83     80     94
D1341V4, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DACT1 MUTATED        4      3      7
  DACT1 WILD-TYPE     85    157    131
D1341V5, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DACT1 MUTATED        6      6      2
  DACT1 WILD-TYPE    176    127     70
D1341V6, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DACT1 MUTATED        0      5      6      5
  DACT1 WILD-TYPE    112     91     86    181
D1341V7, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             6              86
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DACT1 MUTATED        1      1      7      1      2      1      3
  DACT1 WILD-TYPE     59     49     42     39     61    124     96
D1341V8, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DACT1 MUTATED        4      2      0      9
  DACT1 WILD-TYPE    126     76     68    187
D1341V9, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DACT1 MUTATED        1      3      1      3      6      0      0      1
  DACT1 WILD-TYPE     39     59     27     77     63     48     43     27
                 vv
clus              CLUS_9
  DACT1 MUTATED        0
  DACT1 WILD-TYPE     74
D1341V10, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DACT1 MUTATED        1      0      0      1
  DACT1 WILD-TYPE     32     31     27     18
D1341V11, multiclass
[1] "Remove cluster labels:" "DACT1 MUTATED"         
clus
  DACT1 MUTATED DACT1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DACT1 MUTATED        1      0      1      0
  DACT1 WILD-TYPE     53     10     23     22
D1341V12, multiclass
[1] "Remove cluster labels:" "DACT1 MUTATED"         
clus
  DACT1 MUTATED DACT1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 

Clustering(1342) Variable = TMC8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC8 MUTATED        1      0      0      0
  TMC8 WILD-TYPE     45     58     64     43
D1342V1, multiclass
[1] "Remove cluster labels:" "TMC8 MUTATED"          
clus
  TMC8 MUTATED TMC8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC8 MUTATED        1      0      0
  TMC8 WILD-TYPE     50     83     77
D1342V2, multiclass
[1] "Remove cluster labels:" "TMC8 MUTATED"          
clus
  TMC8 MUTATED TMC8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC8 MUTATED        6      0      1      0
  TMC8 WILD-TYPE    172    183    100     20
D1342V3, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC8 MUTATED        3      0      3
  TMC8 WILD-TYPE     84     80     97
D1342V4, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC8 MUTATED        1      1      3
  TMC8 WILD-TYPE     88    159    135
D1342V5, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC8 MUTATED        3      1      1
  TMC8 WILD-TYPE    179    132     71
D1342V6, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC8 MUTATED        0      2      3      2
  TMC8 WILD-TYPE    112     94     89    184
D1342V7, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMC8 MUTATED        0      1      4      0      0      0      2
  TMC8 WILD-TYPE     60     49     45     40     63    125     97
D1342V8, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC8 MUTATED        4      0      0      3
  TMC8 WILD-TYPE    126     78     68    193
D1342V9, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TMC8 MUTATED        0      3      0      0      3      0      0      0      1
  TMC8 WILD-TYPE     40     59     28     80     66     48     43     28     73
D1342V10, multiclass
        clus
vv       TMC8 MUTATED TMC8 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC8 MUTATED        0      0      0      1
  TMC8 WILD-TYPE     33     31     27     18
D1342V11, multiclass
[1] "Remove cluster labels:" "TMC8 MUTATED"          
clus
  TMC8 MUTATED TMC8 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-G5-6641 
"TMC8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC8 MUTATED        1      0      0      0
  TMC8 WILD-TYPE     53     10     24     22
D1342V12, multiclass
[1] "Remove cluster labels:" "TMC8 MUTATED"          
clus
  TMC8 MUTATED TMC8 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" "TMC8 WILD-TYPE" 
    TCGA-G5-6641 
"TMC8 WILD-TYPE" 

Clustering(1343) Variable = SULF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF2 MUTATED        2      1      0      4
  SULF2 WILD-TYPE     44     57     64     39
D1343V1, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SULF2 MUTATED        4      1      2
  SULF2 WILD-TYPE     47     82     75
D1343V2, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF2 MUTATED       14      5      5      0
  SULF2 WILD-TYPE    164    178     96     20
D1343V3, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             5             178
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SULF2 MUTATED        7      3      8
  SULF2 WILD-TYPE     80     77     92
D1343V4, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SULF2 MUTATED        2      9     11
  SULF2 WILD-TYPE     87    151    127
D1343V5, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SULF2 MUTATED       13      5      4
  SULF2 WILD-TYPE    169    128     68
D1343V6, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1            13             169
  CLUS_2             5             128
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF2 MUTATED        5      7      8      5
  SULF2 WILD-TYPE    107     89     84    181
D1343V7, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             7              89
  CLUS_3             8              84
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SULF2 MUTATED        5      3      6      3      1      2      5
  SULF2 WILD-TYPE     55     47     43     37     62    123     94
D1343V8, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF2 MUTATED       10      4      4      6
  SULF2 WILD-TYPE    120     74     64    190
D1343V9, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             4              74
  CLUS_3             4              64
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SULF2 MUTATED        4      6      2      1      4      2      4      1
  SULF2 WILD-TYPE     36     56     26     79     65     46     39     27
                 vv
clus              CLUS_9
  SULF2 MUTATED        0
  SULF2 WILD-TYPE     74
D1343V10, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             4              39
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF2 MUTATED        2      0      2      3
  SULF2 WILD-TYPE     31     31     25     16
D1343V11, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF2 MUTATED        3      0      2      2
  SULF2 WILD-TYPE     51     10     22     20
D1343V12, multiclass
        clus
vv       SULF2 MUTATED SULF2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1344) Variable = AIM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIM2 MUTATED        0      0      0      1
  AIM2 WILD-TYPE     46     58     64     42
D1344V1, multiclass
[1] "Remove cluster labels:" "AIM2 MUTATED"          
clus
  AIM2 MUTATED AIM2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AIM2 MUTATED        0      1      0
  AIM2 WILD-TYPE     51     82     77
D1344V2, multiclass
[1] "Remove cluster labels:" "AIM2 MUTATED"          
clus
  AIM2 MUTATED AIM2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIM2 MUTATED        7      1      0      1
  AIM2 WILD-TYPE    171    182    101     19
D1344V3, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AIM2 MUTATED        5      0      3
  AIM2 WILD-TYPE     82     80     97
D1344V4, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AIM2 MUTATED        0      3      5
  AIM2 WILD-TYPE     89    157    133
D1344V5, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AIM2 MUTATED        2      6      0
  AIM2 WILD-TYPE    180    127     72
D1344V6, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIM2 MUTATED        1      4      2      2
  AIM2 WILD-TYPE    111     92     90    184
D1344V7, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AIM2 MUTATED        1      3      3      0      0      0      2
  AIM2 WILD-TYPE     59     47     46     40     63    125     97
D1344V8, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIM2 MUTATED        2      2      0      5
  AIM2 WILD-TYPE    128     76     68    191
D1344V9, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AIM2 MUTATED        0      1      3      2      1      0      0      0      2
  AIM2 WILD-TYPE     40     61     25     78     68     48     43     28     72
D1344V10, multiclass
        clus
vv       AIM2 MUTATED AIM2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIM2 MUTATED        1      0      0      1
  AIM2 WILD-TYPE     32     31     27     18
D1344V11, multiclass
[1] "Remove cluster labels:" "AIM2 MUTATED"          
clus
  AIM2 MUTATED AIM2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6603 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AIM2 MUTATED        2      0      0      0
  AIM2 WILD-TYPE     52     10     24     22
D1344V12, multiclass
[1] "Remove cluster labels:" "AIM2 MUTATED"          
clus
  AIM2 MUTATED AIM2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6603 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" "AIM2 WILD-TYPE" 

Clustering(1345) Variable = SPAG7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG7 MUTATED        0      0      0      0
  SPAG7 WILD-TYPE     46     58     64     43
D1345V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG7 MUTATED        0      0      0
  SPAG7 WILD-TYPE     51     83     77
D1345V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG7 MUTATED        2      1      0      0
  SPAG7 WILD-TYPE    176    182    101     20
D1345V3, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG7 MUTATED        0      1      2
  SPAG7 WILD-TYPE     87     79     98
D1345V4, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG7 MUTATED        1      2      0
  SPAG7 WILD-TYPE     88    158    138
D1345V5, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             0             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAG7 MUTATED        1      2      0
  SPAG7 WILD-TYPE    181    131     72
D1345V6, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG7 MUTATED        1      2      0      0
  SPAG7 WILD-TYPE    111     94     92    186
D1345V7, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPAG7 MUTATED        1      1      1      0      0      0      0
  SPAG7 WILD-TYPE     59     49     48     40     63    125     99
D1345V8, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG7 MUTATED        3      0      0      0
  SPAG7 WILD-TYPE    127     78     68    196
D1345V9, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPAG7 MUTATED        1      0      0      1      1      0      0      0
  SPAG7 WILD-TYPE     39     62     28     79     68     48     43     28
                 vv
clus              CLUS_9
  SPAG7 MUTATED        0
  SPAG7 WILD-TYPE     74
D1345V10, multiclass
        clus
vv       SPAG7 MUTATED SPAG7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG7 MUTATED        0      0      0      1
  SPAG7 WILD-TYPE     33     31     27     18
D1345V11, multiclass
[1] "Remove cluster labels:" "SPAG7 MUTATED"         
clus
  SPAG7 MUTATED SPAG7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-G5-6641 
"SPAG7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG7 MUTATED        0      0      1      0
  SPAG7 WILD-TYPE     54     10     23     22
D1345V12, multiclass
[1] "Remove cluster labels:" "SPAG7 MUTATED"         
clus
  SPAG7 MUTATED SPAG7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" "SPAG7 WILD-TYPE" 
     TCGA-G5-6641 
"SPAG7 WILD-TYPE" 

Clustering(1346) Variable = WDR75 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR75 MUTATED        3      0      1      1
  WDR75 WILD-TYPE     43     58     63     42
D1346V1, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR75 MUTATED        3      2      0
  WDR75 WILD-TYPE     48     81     77
D1346V2, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR75 MUTATED        5      2      0      1
  WDR75 WILD-TYPE    173    181    101     19
D1346V3, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR75 MUTATED        0      0      3
  WDR75 WILD-TYPE     87     80     97
D1346V4, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR75 MUTATED        3      2      1
  WDR75 WILD-TYPE     86    158    137
D1346V5, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR75 MUTATED        3      2      1
  WDR75 WILD-TYPE    179    131     71
D1346V6, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR75 MUTATED        1      0      2      5
  WDR75 WILD-TYPE    111     96     90    181
D1346V7, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              96
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR75 MUTATED        0      0      1      0      2      2      3
  WDR75 WILD-TYPE     60     50     48     40     61    123     96
D1346V8, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR75 MUTATED        1      2      0      3
  WDR75 WILD-TYPE    129     76     68    193
D1346V9, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR75 MUTATED        0      1      0      1      2      0      0      1
  WDR75 WILD-TYPE     40     61     28     79     67     48     43     27
                 vv
clus              CLUS_9
  WDR75 MUTATED        1
  WDR75 WILD-TYPE     73
D1346V10, multiclass
        clus
vv       WDR75 MUTATED WDR75 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR75 MUTATED        0      0      0      1
  WDR75 WILD-TYPE     33     31     27     18
D1346V11, multiclass
[1] "Remove cluster labels:" "WDR75 MUTATED"         
clus
  WDR75 MUTATED WDR75 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-G5-6641 
"WDR75 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR75 MUTATED        1      0      0      0
  WDR75 WILD-TYPE     53     10     24     22
D1346V12, multiclass
[1] "Remove cluster labels:" "WDR75 MUTATED"         
clus
  WDR75 MUTATED WDR75 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" "WDR75 WILD-TYPE" 
     TCGA-G5-6641 
"WDR75 WILD-TYPE" 

Clustering(1347) Variable = CPN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPN2 MUTATED        1      0      0      0
  CPN2 WILD-TYPE     45     58     64     43
D1347V1, multiclass
[1] "Remove cluster labels:" "CPN2 MUTATED"          
clus
  CPN2 MUTATED CPN2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPN2 MUTATED        1      0      0
  CPN2 WILD-TYPE     50     83     77
D1347V2, multiclass
[1] "Remove cluster labels:" "CPN2 MUTATED"          
clus
  CPN2 MUTATED CPN2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CPN2 WILD-TYPE" "CPN2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPN2 MUTATED        7      2      0      1
  CPN2 WILD-TYPE    171    181    101     19
D1347V3, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPN2 MUTATED        4      3      2
  CPN2 WILD-TYPE     83     77     98
D1347V4, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPN2 MUTATED        0      3      5
  CPN2 WILD-TYPE     89    157    133
D1347V5, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPN2 MUTATED        3      4      1
  CPN2 WILD-TYPE    179    129     71
D1347V6, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPN2 MUTATED        3      3      3      1
  CPN2 WILD-TYPE    109     93     89    185
D1347V7, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPN2 MUTATED        1      2      4      0      2      0      1
  CPN2 WILD-TYPE     59     48     45     40     61    125     98
D1347V8, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPN2 MUTATED        4      3      1      2
  CPN2 WILD-TYPE    126     75     67    194
D1347V9, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CPN2 MUTATED        0      3      1      1      3      0      1      0      1
  CPN2 WILD-TYPE     40     59     27     79     66     48     42     28     73
D1347V10, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPN2 MUTATED        0      2      1      1
  CPN2 WILD-TYPE     33     29     26     18
D1347V11, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPN2 MUTATED        0      1      2      1
  CPN2 WILD-TYPE     54      9     22     21
D1347V12, multiclass
        clus
vv       CPN2 MUTATED CPN2 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1348) Variable = NFKBIB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIB MUTATED        0      1      0      0
  NFKBIB WILD-TYPE     46     57     64     43
D1348V1, multiclass
[1] "Remove cluster labels:" "NFKBIB MUTATED"        
clus
  NFKBIB MUTATED NFKBIB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIB MUTATED        0      0      1
  NFKBIB WILD-TYPE     51     83     76
D1348V2, multiclass
[1] "Remove cluster labels:" "NFKBIB MUTATED"        
clus
  NFKBIB MUTATED NFKBIB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NFKBIB WILD-TYPE" "NFKBIB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIB MUTATED        2      3      0      0
  NFKBIB WILD-TYPE    176    180    101     20
D1348V3, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              2              176
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIB MUTATED        1      2      1
  NFKBIB WILD-TYPE     86     78     99
D1348V4, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIB MUTATED        0      1      3
  NFKBIB WILD-TYPE     89    159    135
D1348V5, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFKBIB MUTATED        3      1      0
  NFKBIB WILD-TYPE    179    132     72
D1348V6, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIB MUTATED        2      1      1      1
  NFKBIB WILD-TYPE    110     95     91    185
D1348V7, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFKBIB MUTATED        0      1      1      1      1      1      0
  NFKBIB WILD-TYPE     60     49     48     39     62    124     99
D1348V8, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIB MUTATED        0      2      1      2
  NFKBIB WILD-TYPE    130     76     67    194
D1348V9, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              0              130
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NFKBIB MUTATED        0      2      0      0      1      1      1      0
  NFKBIB WILD-TYPE     40     60     28     80     68     47     42     28
                  vv
clus               CLUS_9
  NFKBIB MUTATED        0
  NFKBIB WILD-TYPE     74
D1348V10, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIB MUTATED        2      1      0      0
  NFKBIB WILD-TYPE     31     30     27     19
D1348V11, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFKBIB MUTATED        1      1      0      1
  NFKBIB WILD-TYPE     53      9     24     21
D1348V12, multiclass
        clus
vv       NFKBIB MUTATED NFKBIB WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1349) Variable = ATRX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        3      2      0      1
  ATRX WILD-TYPE     43     56     64     42
D1349V1, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            3             43
  CLUS_2            2             56
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        4      2      0
  ATRX WILD-TYPE     47     81     77
D1349V2, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       21      5      4      1
  ATRX WILD-TYPE    157    178     97     19
D1349V3, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           21            157
  CLUS_2            5            178
  CLUS_3            4             97
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        8      6     14
  ATRX WILD-TYPE     79     74     86
D1349V4, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            8             79
  CLUS_2            6             74
  CLUS_3           14             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED        4     10     14
  ATRX WILD-TYPE     85    150    124
D1349V5, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            4             85
  CLUS_2           10            150
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATRX MUTATED       17      8      3
  ATRX WILD-TYPE    165    125     69
D1349V6, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           17            165
  CLUS_2            8            125
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        7      9     11      6
  ATRX WILD-TYPE    105     87     81    180
D1349V7, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            7            105
  CLUS_2            9             87
  CLUS_3           11             81
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATRX MUTATED        3      3     10      2      7      2      6
  ATRX WILD-TYPE     57     47     39     38     56    123     93
D1349V8, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3           10             39
  CLUS_4            2             38
  CLUS_5            7             56
  CLUS_6            2            123
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED       11      9      1     12
  ATRX WILD-TYPE    119     69     67    184
D1349V9, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1           11            119
  CLUS_2            9             69
  CLUS_3            1             67
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATRX MUTATED        3     10      2      5      9      1      0      1      2
  ATRX WILD-TYPE     37     52     26     75     60     47     43     27     72
D1349V10, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            3             37
  CLUS_2           10             52
  CLUS_3            2             26
  CLUS_4            5             75
  CLUS_5            9             60
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        2      3      2      2
  ATRX WILD-TYPE     31     28     25     17
D1349V11, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             28
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRX MUTATED        6      0      2      1
  ATRX WILD-TYPE     48     10     22     21
D1349V12, multiclass
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1350) Variable = TTC24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC24 MUTATED        1      0      0      1
  TTC24 WILD-TYPE     45     58     64     42
D1350V1, multiclass
[1] "Remove cluster labels:" "TTC24 MUTATED"         
clus
  TTC24 MUTATED TTC24 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3667 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AY-4071 
"TTC24 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC24 MUTATED        1      0      1
  TTC24 WILD-TYPE     50     83     76
D1350V2, multiclass
[1] "Remove cluster labels:" "TTC24 MUTATED"         
clus
  TTC24 MUTATED TTC24 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3667 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" "TTC24 WILD-TYPE" 
     TCGA-AY-4071 
"TTC24 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC24 MUTATED        6      1      0      0
  TTC24 WILD-TYPE    172    182    101     20
D1350V3, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC24 MUTATED        1      1      3
  TTC24 WILD-TYPE     86     79     97
D1350V4, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC24 MUTATED        1      2      4
  TTC24 WILD-TYPE     88    158    134
D1350V5, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC24 MUTATED        3      1      3
  TTC24 WILD-TYPE    179    132     69
D1350V6, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC24 MUTATED        1      2      2      2
  TTC24 WILD-TYPE    111     94     90    184
D1350V7, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTC24 MUTATED        1      1      3      0      0      0      2
  TTC24 WILD-TYPE     59     49     46     40     63    125     97
D1350V8, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC24 MUTATED        3      0      1      3
  TTC24 WILD-TYPE    127     78     67    193
D1350V9, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TTC24 MUTATED        0      1      1      0      3      0      2      0
  TTC24 WILD-TYPE     40     61     27     80     66     48     41     28
                 vv
clus              CLUS_9
  TTC24 MUTATED        0
  TTC24 WILD-TYPE     74
D1350V10, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC24 MUTATED        0      0      1      2
  TTC24 WILD-TYPE     33     31     26     17
D1350V11, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC24 MUTATED        2      0      1      0
  TTC24 WILD-TYPE     52     10     23     22
D1350V12, multiclass
        clus
vv       TTC24 MUTATED TTC24 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1351) Variable = ARMC9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC9 MUTATED        0      0      0      3
  ARMC9 WILD-TYPE     46     58     64     40
D1351V1, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC9 MUTATED        2      0      1
  ARMC9 WILD-TYPE     49     83     76
D1351V2, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC9 MUTATED        6      1      1      0
  ARMC9 WILD-TYPE    172    182    100     20
D1351V3, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC9 MUTATED        1      1      3
  ARMC9 WILD-TYPE     86     79     97
D1351V4, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC9 MUTATED        0      2      4
  ARMC9 WILD-TYPE     89    158    134
D1351V5, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC9 MUTATED        5      1      0
  ARMC9 WILD-TYPE    177    132     72
D1351V6, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC9 MUTATED        1      3      1      3
  ARMC9 WILD-TYPE    111     93     91    183
D1351V7, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARMC9 MUTATED        1      0      4      0      1      0      2
  ARMC9 WILD-TYPE     59     50     45     40     62    125     97
D1351V8, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC9 MUTATED        4      1      0      2
  ARMC9 WILD-TYPE    126     77     68    194
D1351V9, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARMC9 MUTATED        0      3      0      0      4      0      0      0
  ARMC9 WILD-TYPE     40     59     28     80     65     48     43     28
                 vv
clus              CLUS_9
  ARMC9 MUTATED        0
  ARMC9 WILD-TYPE     74
D1351V10, multiclass
        clus
vv       ARMC9 MUTATED ARMC9 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC9 MUTATED        0      1      0      1
  ARMC9 WILD-TYPE     33     30     27     18
D1351V11, multiclass
[1] "Remove cluster labels:" "ARMC9 MUTATED"         
clus
  ARMC9 MUTATED ARMC9 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC9 MUTATED        1      1      0      0
  ARMC9 WILD-TYPE     53      9     24     22
D1351V12, multiclass
[1] "Remove cluster labels:" "ARMC9 MUTATED"         
clus
  ARMC9 MUTATED ARMC9 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" "ARMC9 WILD-TYPE" 

Clustering(1352) Variable = SNAPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        1      0      0      3
  SNAPC1 WILD-TYPE     45     58     64     40
D1352V1, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        4      0      0
  SNAPC1 WILD-TYPE     47     83     77
D1352V2, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        6      0      1      0
  SNAPC1 WILD-TYPE    172    183    100     20
D1352V3, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        1      0      2
  SNAPC1 WILD-TYPE     86     80     98
D1352V4, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        3      2      2
  SNAPC1 WILD-TYPE     86    158    136
D1352V5, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        3      3      1
  SNAPC1 WILD-TYPE    179    130     71
D1352V6, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        0      2      2      3
  SNAPC1 WILD-TYPE    112     94     90    183
D1352V7, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNAPC1 MUTATED        0      0      2      0      1      0      4
  SNAPC1 WILD-TYPE     60     50     47     40     62    125     95
D1352V8, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        2      1      0      3
  SNAPC1 WILD-TYPE    128     77     68    193
D1352V9, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SNAPC1 MUTATED        0      1      0      0      5      0      0      0
  SNAPC1 WILD-TYPE     40     61     28     80     64     48     43     28
                  vv
clus               CLUS_9
  SNAPC1 MUTATED        0
  SNAPC1 WILD-TYPE     74
D1352V10, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        0      0      0      2
  SNAPC1 WILD-TYPE     33     31     27     17
D1352V11, multiclass
[1] "Remove cluster labels:" "SNAPC1 MUTATED"        
clus
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        1      0      1      0
  SNAPC1 WILD-TYPE     53     10     23     22
D1352V12, multiclass
[1] "Remove cluster labels:" "SNAPC1 MUTATED"        
clus
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" "SNAPC1 WILD-TYPE" 

Clustering(1353) Variable = C20ORF151 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF151 MUTATED        0      1      0      0
  C20ORF151 WILD-TYPE     46     57     64     43
D1353V1, multiclass
[1] "Remove cluster labels:" "C20ORF151 MUTATED"     
clus
  C20ORF151 MUTATED C20ORF151 WILD-TYPE 
                  1                 210 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01Q 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02W 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3574 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3575          TCGA-AG-3578          TCGA-AG-3580 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3584          TCGA-AG-3586          TCGA-AG-3587 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3593          TCGA-AG-3594          TCGA-AG-3598 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3600          TCGA-AG-3601 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3602          TCGA-AG-3605          TCGA-AG-3608 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3611          TCGA-AG-3612 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3883 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3885          TCGA-AG-3887          TCGA-AG-3890 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3896          TCGA-AG-3898          TCGA-AG-3901 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3902          TCGA-AG-3909          TCGA-AG-3999 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-4001          TCGA-AG-4005          TCGA-AG-4007 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-4015          TCGA-AG-A002 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A008          TCGA-AG-A00C          TCGA-AG-A00H 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A00Y          TCGA-AG-A011          TCGA-AG-A014 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A015          TCGA-AG-A01L          TCGA-AG-A025 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02X 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A032          TCGA-AY-4070          TCGA-AY-4071 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF151 MUTATED        0      0      1
  C20ORF151 WILD-TYPE     51     83     76
D1353V2, multiclass
[1] "Remove cluster labels:" "C20ORF151 MUTATED"     
clus
  C20ORF151 MUTATED C20ORF151 WILD-TYPE 
                  1                 210 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01Q 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02W 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3574 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3575          TCGA-AG-3578          TCGA-AG-3580 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3584          TCGA-AG-3586          TCGA-AG-3587 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3593          TCGA-AG-3594          TCGA-AG-3598 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3600          TCGA-AG-3601 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3602          TCGA-AG-3605          TCGA-AG-3608 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3611          TCGA-AG-3612 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3883 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3885          TCGA-AG-3887          TCGA-AG-3890 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3896          TCGA-AG-3898          TCGA-AG-3901 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-3902          TCGA-AG-3909          TCGA-AG-3999 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-4001          TCGA-AG-4005          TCGA-AG-4007 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-4015          TCGA-AG-A002 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A008          TCGA-AG-A00C          TCGA-AG-A00H 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A00Y          TCGA-AG-A011          TCGA-AG-A014 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A015          TCGA-AG-A01L          TCGA-AG-A025 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02X 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
         TCGA-AG-A032          TCGA-AY-4070          TCGA-AY-4071 
"C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" "C20ORF151 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF151 MUTATED        6      1      2      2
  C20ORF151 WILD-TYPE    172    182     99     18
D1353V3, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 6                 172
  CLUS_2                 1                 182
  CLUS_3                 2                  99
  CLUS_4                 2                  18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF151 MUTATED        4      1      3
  C20ORF151 WILD-TYPE     83     79     97
D1353V4, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 4                  83
  CLUS_2                 1                  79
  CLUS_3                 3                  97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF151 MUTATED        3      4      4
  C20ORF151 WILD-TYPE     86    156    134
D1353V5, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 3                  86
  CLUS_2                 4                 156
  CLUS_3                 4                 134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF151 MUTATED        5      4      2
  C20ORF151 WILD-TYPE    177    129     70
D1353V6, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 5                 177
  CLUS_2                 4                 129
  CLUS_3                 2                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF151 MUTATED        1      3      4      3
  C20ORF151 WILD-TYPE    111     93     88    183
D1353V7, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 3                  93
  CLUS_3                 4                  88
  CLUS_4                 3                 183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C20ORF151 MUTATED        1      0      4      2      1      2      1
  C20ORF151 WILD-TYPE     59     50     45     38     62    123     98
D1353V8, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 0                  50
  CLUS_3                 4                  45
  CLUS_4                 2                  38
  CLUS_5                 1                  62
  CLUS_6                 2                 123
  CLUS_7                 1                  98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF151 MUTATED        5      2      2      2
  C20ORF151 WILD-TYPE    125     76     66    194
D1353V9, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 5                 125
  CLUS_2                 2                  76
  CLUS_3                 2                  66
  CLUS_4                 2                 194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C20ORF151 MUTATED        3      2      0      0      2      2      1      0
  C20ORF151 WILD-TYPE     37     60     28     80     67     46     42     28
                     vv
clus                  CLUS_9
  C20ORF151 MUTATED        1
  C20ORF151 WILD-TYPE     73
D1353V10, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 3                  37
  CLUS_2                 2                  60
  CLUS_3                 0                  28
  CLUS_4                 0                  80
  CLUS_5                 2                  67
  CLUS_6                 2                  46
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF151 MUTATED        3      0      1      1
  C20ORF151 WILD-TYPE     30     31     26     18
D1353V11, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 3                  30
  CLUS_2                 0                  31
  CLUS_3                 1                  26
  CLUS_4                 1                  18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF151 MUTATED        2      0      2      1
  C20ORF151 WILD-TYPE     52     10     22     21
D1353V12, multiclass
        clus
vv       C20ORF151 MUTATED C20ORF151 WILD-TYPE
  CLUS_1                 2                  52
  CLUS_2                 0                  10
  CLUS_3                 2                  22
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1354) Variable = DNAJC7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC7 MUTATED        1      0      0      2
  DNAJC7 WILD-TYPE     45     58     64     41
D1354V1, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC7 MUTATED        1      1      1
  DNAJC7 WILD-TYPE     50     82     76
D1354V2, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC7 MUTATED        8      0      0      0
  DNAJC7 WILD-TYPE    170    183    101     20
D1354V3, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC7 MUTATED        1      0      4
  DNAJC7 WILD-TYPE     86     80     96
D1354V4, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC7 MUTATED        0      4      3
  DNAJC7 WILD-TYPE     89    156    135
D1354V5, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC7 MUTATED        4      3      0
  DNAJC7 WILD-TYPE    178    130     72
D1354V6, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC7 MUTATED        0      2      3      3
  DNAJC7 WILD-TYPE    112     94     89    183
D1354V7, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJC7 MUTATED        1      0      4      0      1      0      2
  DNAJC7 WILD-TYPE     59     50     45     40     62    125     97
D1354V8, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC7 MUTATED        3      1      0      4
  DNAJC7 WILD-TYPE    127     77     68    192
D1354V9, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAJC7 MUTATED        1      1      1      0      4      0      1      0
  DNAJC7 WILD-TYPE     39     61     27     80     65     48     42     28
                  vv
clus               CLUS_9
  DNAJC7 MUTATED        0
  DNAJC7 WILD-TYPE     74
D1354V10, multiclass
        clus
vv       DNAJC7 MUTATED DNAJC7 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC7 MUTATED        0      0      0      1
  DNAJC7 WILD-TYPE     33     31     27     18
D1354V11, multiclass
[1] "Remove cluster labels:" "DNAJC7 MUTATED"        
clus
  DNAJC7 MUTATED DNAJC7 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-G5-6641 
"DNAJC7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC7 MUTATED        1      0      0      0
  DNAJC7 WILD-TYPE     53     10     24     22
D1354V12, multiclass
[1] "Remove cluster labels:" "DNAJC7 MUTATED"        
clus
  DNAJC7 MUTATED DNAJC7 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235 
"DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" "DNAJC7 WILD-TYPE" 
      TCGA-G5-6641 
"DNAJC7 WILD-TYPE" 

Clustering(1355) Variable = NUP205 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP205 MUTATED        3      1      1      4
  NUP205 WILD-TYPE     43     57     63     39
D1355V1, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP205 MUTATED        4      4      1
  NUP205 WILD-TYPE     47     79     76
D1355V2, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              4               79
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP205 MUTATED       20      3      3      0
  NUP205 WILD-TYPE    158    180     98     20
D1355V3, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1             20              158
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP205 MUTATED        9      2      5
  NUP205 WILD-TYPE     78     78     95
D1355V4, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP205 MUTATED        3      6     10
  NUP205 WILD-TYPE     86    154    128
D1355V5, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              154
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP205 MUTATED        9      8      2
  NUP205 WILD-TYPE    173    125     70
D1355V6, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              8              125
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP205 MUTATED        2      6      9      9
  NUP205 WILD-TYPE    110     90     83    177
D1355V7, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              9               83
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP205 MUTATED        1      5      7      2      2      3      6
  NUP205 WILD-TYPE     59     45     42     38     61    122     93
D1355V8, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              5               45
  CLUS_3              7               42
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP205 MUTATED        7      5      2     12
  NUP205 WILD-TYPE    123     73     66    184
D1355V9, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP205 MUTATED        3      7      2      1      5      0      0      3
  NUP205 WILD-TYPE     37     55     26     79     64     48     43     25
                  vv
clus               CLUS_9
  NUP205 MUTATED        5
  NUP205 WILD-TYPE     69
D1355V10, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              7               55
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              3               25
  CLUS_9              5               69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP205 MUTATED        2      1      0      2
  NUP205 WILD-TYPE     31     30     27     17
D1355V11, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP205 MUTATED        5      0      0      0
  NUP205 WILD-TYPE     49     10     24     22
D1355V12, multiclass
        clus
vv       NUP205 MUTATED NUP205 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1356) Variable = TF MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TF MUTATED        1      2      0      6
  TF WILD-TYPE     45     56     64     37
D1356V1, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          1           45
  CLUS_2          2           56
  CLUS_3          0           64
  CLUS_4          6           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TF MUTATED        4      2      3
  TF WILD-TYPE     47     81     74
D1356V2, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          4           47
  CLUS_2          2           81
  CLUS_3          3           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TF MUTATED        8      3      3      0
  TF WILD-TYPE    170    180     98     20
D1356V3, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          8          170
  CLUS_2          3          180
  CLUS_3          3           98
  CLUS_4          0           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TF MUTATED        2      1      2
  TF WILD-TYPE     85     79     98
D1356V4, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          2           85
  CLUS_2          1           79
  CLUS_3          2           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TF MUTATED        0      3      5
  TF WILD-TYPE     89    157    133
D1356V5, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          0           89
  CLUS_2          3          157
  CLUS_3          5          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TF MUTATED        4      4      0
  TF WILD-TYPE    178    129     72
D1356V6, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          4          178
  CLUS_2          4          129
  CLUS_3          0           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TF MUTATED        1      3      1      9
  TF WILD-TYPE    111     93     91    177
D1356V7, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          1          111
  CLUS_2          3           93
  CLUS_3          1           91
  CLUS_4          9          177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TF MUTATED        3      1      1      1      0      2      6
  TF WILD-TYPE     57     49     48     39     63    123     93
D1356V8, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          3           57
  CLUS_2          1           49
  CLUS_3          1           48
  CLUS_4          1           39
  CLUS_5          0           63
  CLUS_6          2          123
  CLUS_7          6           93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TF MUTATED        3      0      2      7
  TF WILD-TYPE    127     78     66    189
D1356V9, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          3          127
  CLUS_2          0           78
  CLUS_3          2           66
  CLUS_4          7          189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TF MUTATED        0      0      3      3      2      1      0      1      2
  TF WILD-TYPE     40     62     25     77     67     47     43     27     72
D1356V10, multiclass
        clus
vv       TF MUTATED TF WILD-TYPE
  CLUS_1          0           40
  CLUS_2          0           62
  CLUS_3          3           25
  CLUS_4          3           77
  CLUS_5          2           67
  CLUS_6          1           47
  CLUS_7          0           43
  CLUS_8          1           27
  CLUS_9          2           72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TF MUTATED        0      0      1      1
  TF WILD-TYPE     33     31     26     18
D1356V11, multiclass
[1] "Remove cluster labels:" "TF MUTATED"            
clus
  TF MUTATED TF WILD-TYPE 
           2          108 
  TCGA-A6-5657   TCGA-A6-6137   TCGA-A6-6138   TCGA-A6-6141   TCGA-A6-6142 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-A6-6649   TCGA-A6-6651   TCGA-A6-6653   TCGA-A6-6654   TCGA-A6-6781 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-A6-6782   TCGA-AA-3489   TCGA-AA-3511   TCGA-AD-5900   TCGA-AD-6548 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AD-6889   TCGA-AD-6901   TCGA-AD-6963   TCGA-AD-6964   TCGA-AD-6965 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AF-2687   TCGA-AF-4110   TCGA-AF-6655   TCGA-AF-6672   TCGA-AG-3731 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AG-3732   TCGA-AH-6544   TCGA-AH-6547   TCGA-AH-6549   TCGA-AH-6643 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AY-6196   TCGA-AZ-4323   TCGA-AZ-4616   TCGA-AZ-5403   TCGA-AZ-6598 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AZ-6600   TCGA-AZ-6601   TCGA-AZ-6603   TCGA-AZ-6605   TCGA-AZ-6607 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CA-6718   TCGA-CA-6719   TCGA-CI-6619   TCGA-CI-6620   TCGA-CI-6621 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CK-5916   TCGA-CK-6748   TCGA-CL-5918   TCGA-CM-5860   TCGA-CM-6167 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CM-6674   TCGA-CM-6676   TCGA-CM-6677   TCGA-CM-6678   TCGA-CM-6679 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CM-6680   TCGA-D5-5537   TCGA-D5-6533   TCGA-D5-6534   TCGA-D5-6536 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-D5-6922   TCGA-D5-6924   TCGA-DC-5337   TCGA-DC-5869   TCGA-DC-6157 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DC-6158   TCGA-DC-6681   TCGA-DC-6682   TCGA-DC-6683   TCGA-DM-A0XD 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DM-A0XF   TCGA-DM-A1D0   TCGA-DM-A1D7   TCGA-DM-A1D8   TCGA-DM-A1D9 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DM-A1DA   TCGA-DM-A282   TCGA-DM-A285   TCGA-DM-A28F   TCGA-DY-A1DC 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DY-A1DD   TCGA-DY-A1DG   TCGA-DY-A1H8   TCGA-EI-6506   TCGA-EI-6507 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-F4-6459   TCGA-F4-6460   TCGA-F4-6569   TCGA-F4-6570   TCGA-F4-6704 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-F4-6805   TCGA-F4-6807   TCGA-F4-6808   TCGA-F4-6809   TCGA-F5-6464 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-F5-6465   TCGA-F5-6571   TCGA-F5-6702   TCGA-F5-6811   TCGA-F5-6812 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-G4-6299   TCGA-G4-6303   TCGA-G4-6306   TCGA-G4-6309   TCGA-G4-6625 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-G4-6628   TCGA-G5-6235   TCGA-G5-6641 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TF MUTATED        0      0      2      0
  TF WILD-TYPE     54     10     22     22
D1356V12, multiclass
[1] "Remove cluster labels:" "TF MUTATED"            
clus
  TF MUTATED TF WILD-TYPE 
           2          108 
  TCGA-A6-5657   TCGA-A6-6137   TCGA-A6-6138   TCGA-A6-6141   TCGA-A6-6142 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-A6-6649   TCGA-A6-6651   TCGA-A6-6653   TCGA-A6-6654   TCGA-A6-6781 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-A6-6782   TCGA-AA-3489   TCGA-AA-3511   TCGA-AD-5900   TCGA-AD-6548 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AD-6889   TCGA-AD-6901   TCGA-AD-6963   TCGA-AD-6964   TCGA-AD-6965 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AF-2687   TCGA-AF-4110   TCGA-AF-6655   TCGA-AF-6672   TCGA-AG-3731 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AG-3732   TCGA-AH-6544   TCGA-AH-6547   TCGA-AH-6549   TCGA-AH-6643 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AY-6196   TCGA-AZ-4323   TCGA-AZ-4616   TCGA-AZ-5403   TCGA-AZ-6598 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-AZ-6600   TCGA-AZ-6601   TCGA-AZ-6603   TCGA-AZ-6605   TCGA-AZ-6607 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CA-6718   TCGA-CA-6719   TCGA-CI-6619   TCGA-CI-6620   TCGA-CI-6621 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CK-5916   TCGA-CK-6748   TCGA-CL-5918   TCGA-CM-5860   TCGA-CM-6167 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CM-6674   TCGA-CM-6676   TCGA-CM-6677   TCGA-CM-6678   TCGA-CM-6679 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-CM-6680   TCGA-D5-5537   TCGA-D5-6533   TCGA-D5-6534   TCGA-D5-6536 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-D5-6922   TCGA-D5-6924   TCGA-DC-5337   TCGA-DC-5869   TCGA-DC-6157 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DC-6158   TCGA-DC-6681   TCGA-DC-6682   TCGA-DC-6683   TCGA-DM-A0XD 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DM-A0XF   TCGA-DM-A1D0   TCGA-DM-A1D7   TCGA-DM-A1D8   TCGA-DM-A1D9 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DM-A1DA   TCGA-DM-A282   TCGA-DM-A285   TCGA-DM-A28F   TCGA-DY-A1DC 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-DY-A1DD   TCGA-DY-A1DG   TCGA-DY-A1H8   TCGA-EI-6506   TCGA-EI-6507 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-F4-6459   TCGA-F4-6460   TCGA-F4-6569   TCGA-F4-6570   TCGA-F4-6704 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-F4-6805   TCGA-F4-6807   TCGA-F4-6808   TCGA-F4-6809   TCGA-F5-6464 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-F5-6465   TCGA-F5-6571   TCGA-F5-6702   TCGA-F5-6811   TCGA-F5-6812 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-G4-6299   TCGA-G4-6303   TCGA-G4-6306   TCGA-G4-6309   TCGA-G4-6625 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 
  TCGA-G4-6628   TCGA-G5-6235   TCGA-G5-6641 
"TF WILD-TYPE" "TF WILD-TYPE" "TF WILD-TYPE" 

Clustering(1357) Variable = LRRC37B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC37B MUTATED        0      0      0      1
  LRRC37B WILD-TYPE     46     58     64     42
D1357V1, multiclass
[1] "Remove cluster labels:" "LRRC37B MUTATED"       
clus
  LRRC37B MUTATED LRRC37B WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRC37B MUTATED        0      0      1
  LRRC37B WILD-TYPE     51     83     76
D1357V2, multiclass
[1] "Remove cluster labels:" "LRRC37B MUTATED"       
clus
  LRRC37B MUTATED LRRC37B WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"LRRC37B WILD-TYPE" "LRRC37B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC37B MUTATED        4      4      1      0
  LRRC37B WILD-TYPE    174    179    100     20
D1357V3, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               4               174
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRC37B MUTATED        4      2      2
  LRRC37B WILD-TYPE     83     78     98
D1357V4, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRC37B MUTATED        0      5      2
  LRRC37B WILD-TYPE     89    155    136
D1357V5, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRC37B MUTATED        3      3      1
  LRRC37B WILD-TYPE    179    130     71
D1357V6, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC37B MUTATED        2      3      3      1
  LRRC37B WILD-TYPE    110     93     89    185
D1357V7, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               2               110
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRC37B MUTATED        3      1      0      1      3      0      1
  LRRC37B WILD-TYPE     57     49     49     39     60    125     98
D1357V8, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               0                49
  CLUS_4               1                39
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC37B MUTATED        2      5      0      2
  LRRC37B WILD-TYPE    128     73     68    194
D1357V9, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               2               128
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRC37B MUTATED        1      2      0      1      2      1      1      1
  LRRC37B WILD-TYPE     39     60     28     79     67     47     42     27
                   vv
clus                CLUS_9
  LRRC37B MUTATED        0
  LRRC37B WILD-TYPE     74
D1357V10, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC37B MUTATED        2      1      0      0
  LRRC37B WILD-TYPE     31     30     27     19
D1357V11, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC37B MUTATED        2      0      0      1
  LRRC37B WILD-TYPE     52     10     24     21
D1357V12, multiclass
        clus
vv       LRRC37B MUTATED LRRC37B WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1358) Variable = BCHE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCHE MUTATED        5      3      0      1
  BCHE WILD-TYPE     41     55     64     42
D1358V1, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            5             41
  CLUS_2            3             55
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCHE MUTATED        5      3      1
  BCHE WILD-TYPE     46     80     76
D1358V2, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            5             46
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCHE MUTATED       15     10      2      1
  BCHE WILD-TYPE    163    173     99     19
D1358V3, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1           15            163
  CLUS_2           10            173
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCHE MUTATED        7      5      7
  BCHE WILD-TYPE     80     75     93
D1358V4, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            7             80
  CLUS_2            5             75
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCHE MUTATED        4      9     11
  BCHE WILD-TYPE     85    151    127
D1358V5, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            4             85
  CLUS_2            9            151
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCHE MUTATED       11      9      4
  BCHE WILD-TYPE    171    124     68
D1358V6, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1           11            171
  CLUS_2            9            124
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCHE MUTATED        6      7      7      9
  BCHE WILD-TYPE    106     89     85    177
D1358V7, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            6            106
  CLUS_2            7             89
  CLUS_3            7             85
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCHE MUTATED        4      4      8      1      3      2      7
  BCHE WILD-TYPE     56     46     41     39     60    123     92
D1358V8, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            4             56
  CLUS_2            4             46
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCHE MUTATED        9      5      2     12
  BCHE WILD-TYPE    121     73     66    184
D1358V9, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            9            121
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BCHE MUTATED        2      7      2      3      9      3      0      0      2
  BCHE WILD-TYPE     38     55     26     77     60     45     43     28     72
D1358V10, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            2             38
  CLUS_2            7             55
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            9             60
  CLUS_6            3             45
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCHE MUTATED        3      2      2      2
  BCHE WILD-TYPE     30     29     25     17
D1358V11, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCHE MUTATED        3      1      3      2
  BCHE WILD-TYPE     51      9     21     20
D1358V12, multiclass
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            3             21
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1359) Variable = TRYX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRYX3 MUTATED        0      0      0      2
  TRYX3 WILD-TYPE     46     58     64     41
D1359V1, multiclass
[1] "Remove cluster labels:" "TRYX3 MUTATED"         
clus
  TRYX3 MUTATED TRYX3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AY-4071 
"TRYX3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRYX3 MUTATED        1      0      1
  TRYX3 WILD-TYPE     50     83     76
D1359V2, multiclass
[1] "Remove cluster labels:" "TRYX3 MUTATED"         
clus
  TRYX3 MUTATED TRYX3 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AY-4071 
"TRYX3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRYX3 MUTATED        4      0      3      0
  TRYX3 WILD-TYPE    174    183     98     20
D1359V3, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRYX3 MUTATED        2      2      1
  TRYX3 WILD-TYPE     85     78     99
D1359V4, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRYX3 MUTATED        1      2      2
  TRYX3 WILD-TYPE     88    158    136
D1359V5, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRYX3 MUTATED        2      2      1
  TRYX3 WILD-TYPE    180    131     71
D1359V6, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRYX3 MUTATED        1      1      3      2
  TRYX3 WILD-TYPE    111     95     89    184
D1359V7, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRYX3 MUTATED        1      1      3      0      1      0      1
  TRYX3 WILD-TYPE     59     49     46     40     62    125     98
D1359V8, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRYX3 MUTATED        2      3      0      2
  TRYX3 WILD-TYPE    128     75     68    194
D1359V9, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRYX3 MUTATED        1      2      1      2      1      0      0      0
  TRYX3 WILD-TYPE     39     60     27     78     68     48     43     28
                 vv
clus              CLUS_9
  TRYX3 MUTATED        0
  TRYX3 WILD-TYPE     74
D1359V10, multiclass
        clus
vv       TRYX3 MUTATED TRYX3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRYX3 MUTATED        1      0      0      1
  TRYX3 WILD-TYPE     32     31     27     18
D1359V11, multiclass
[1] "Remove cluster labels:" "TRYX3 MUTATED"         
clus
  TRYX3 MUTATED TRYX3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRYX3 MUTATED        2      0      0      0
  TRYX3 WILD-TYPE     52     10     24     22
D1359V12, multiclass
[1] "Remove cluster labels:" "TRYX3 MUTATED"         
clus
  TRYX3 MUTATED TRYX3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" "TRYX3 WILD-TYPE" 

Clustering(1360) Variable = ZNF436 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF436 MUTATED        0      0      0      1
  ZNF436 WILD-TYPE     46     58     64     42
D1360V1, multiclass
[1] "Remove cluster labels:" "ZNF436 MUTATED"        
clus
  ZNF436 MUTATED ZNF436 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF436 MUTATED        1      0      0
  ZNF436 WILD-TYPE     50     83     77
D1360V2, multiclass
[1] "Remove cluster labels:" "ZNF436 MUTATED"        
clus
  ZNF436 MUTATED ZNF436 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ZNF436 WILD-TYPE" "ZNF436 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF436 MUTATED        5      2      0      0
  ZNF436 WILD-TYPE    173    181    101     20
D1360V3, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF436 MUTATED        1      2      3
  ZNF436 WILD-TYPE     86     78     97
D1360V4, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF436 MUTATED        0      4      2
  ZNF436 WILD-TYPE     89    156    136
D1360V5, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF436 MUTATED        3      3      0
  ZNF436 WILD-TYPE    179    130     72
D1360V6, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF436 MUTATED        3      2      1      1
  ZNF436 WILD-TYPE    109     94     91    185
D1360V7, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF436 MUTATED        3      0      2      0      1      0      1
  ZNF436 WILD-TYPE     57     50     47     40     62    125     98
D1360V8, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF436 MUTATED        4      2      1      0
  ZNF436 WILD-TYPE    126     76     67    196
D1360V9, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF436 MUTATED        1      2      0      0      0      1      2      1
  ZNF436 WILD-TYPE     39     60     28     80     69     47     41     27
                  vv
clus               CLUS_9
  ZNF436 MUTATED        0
  ZNF436 WILD-TYPE     74
D1360V10, multiclass
        clus
vv       ZNF436 MUTATED ZNF436 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF436 MUTATED        0      0      0      0
  ZNF436 WILD-TYPE     33     31     27     19
D1360V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF436 MUTATED        0      0      0      0
  ZNF436 WILD-TYPE     54     10     24     22
D1360V12, multiclass

Clustering(1361) Variable = A1CF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A1CF MUTATED        3      0      0      0
  A1CF WILD-TYPE     43     58     64     43
D1361V1, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  A1CF MUTATED        2      1      0
  A1CF WILD-TYPE     49     82     77
D1361V2, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A1CF MUTATED        4      2      2      0
  A1CF WILD-TYPE    174    181     99     20
D1361V3, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  A1CF MUTATED        1      3      2
  A1CF WILD-TYPE     86     77     98
D1361V4, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            1             86
  CLUS_2            3             77
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  A1CF MUTATED        1      1      4
  A1CF WILD-TYPE     88    159    134
D1361V5, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  A1CF MUTATED        4      0      2
  A1CF WILD-TYPE    178    133     70
D1361V6, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            4            178
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A1CF MUTATED        3      0      2      3
  A1CF WILD-TYPE    109     96     90    183
D1361V7, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            3            109
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  A1CF MUTATED        2      1      0      0      2      1      2
  A1CF WILD-TYPE     58     49     49     40     61    124     97
D1361V8, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A1CF MUTATED        3      1      1      3
  A1CF WILD-TYPE    127     77     67    193
D1361V9, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  A1CF MUTATED        1      1      0      4      1      0      1      0      0
  A1CF WILD-TYPE     39     61     28     76     68     48     42     28     74
D1361V10, multiclass
        clus
vv       A1CF MUTATED A1CF WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            4             76
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A1CF MUTATED        2      0      0      0
  A1CF WILD-TYPE     31     31     27     19
D1361V11, multiclass
[1] "Remove cluster labels:" "A1CF MUTATED"          
clus
  A1CF MUTATED A1CF WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6677 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  A1CF MUTATED        1      0      0      1
  A1CF WILD-TYPE     53     10     24     21
D1361V12, multiclass
[1] "Remove cluster labels:" "A1CF MUTATED"          
clus
  A1CF MUTATED A1CF WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6677 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" "A1CF WILD-TYPE" 

Clustering(1362) Variable = TXLNG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        3      0      0      2
  TXLNG WILD-TYPE     43     58     64     41
D1362V1, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        3      1      1
  TXLNG WILD-TYPE     48     82     76
D1362V2, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED       10      0      0      0
  TXLNG WILD-TYPE    168    183    101     20
D1362V3, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        3      0      2
  TXLNG WILD-TYPE     84     80     98
D1362V4, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        0      5      3
  TXLNG WILD-TYPE     89    155    135
D1362V5, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        2      6      0
  TXLNG WILD-TYPE    180    127     72
D1362V6, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             2             180
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        0      4      1      5
  TXLNG WILD-TYPE    112     92     91    181
D1362V7, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXLNG MUTATED        1      2      1      1      1      0      4
  TXLNG WILD-TYPE     59     48     48     39     62    125     95
D1362V8, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        1      1      1      6
  TXLNG WILD-TYPE    129     77     67    190
D1362V9, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXLNG MUTATED        1      1      2      0      3      0      0      1
  TXLNG WILD-TYPE     39     61     26     80     66     48     43     27
                 vv
clus              CLUS_9
  TXLNG MUTATED        1
  TXLNG WILD-TYPE     73
D1362V10, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        0      0      0      1
  TXLNG WILD-TYPE     33     31     27     18
D1362V11, multiclass
[1] "Remove cluster labels:" "TXLNG MUTATED"         
clus
  TXLNG MUTATED TXLNG WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-G5-6641 
"TXLNG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        0      0      1      0
  TXLNG WILD-TYPE     54     10     23     22
D1362V12, multiclass
[1] "Remove cluster labels:" "TXLNG MUTATED"         
clus
  TXLNG MUTATED TXLNG WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" "TXLNG WILD-TYPE" 
     TCGA-G5-6641 
"TXLNG WILD-TYPE" 

Clustering(1363) Variable = P2RX7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX7 MUTATED        1      1      0      1
  P2RX7 WILD-TYPE     45     57     64     42
D1363V1, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX7 MUTATED        1      1      1
  P2RX7 WILD-TYPE     50     82     76
D1363V2, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX7 MUTATED        5      4      4      0
  P2RX7 WILD-TYPE    173    179     97     20
D1363V3, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX7 MUTATED        2      1      7
  P2RX7 WILD-TYPE     85     79     93
D1363V4, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX7 MUTATED        0      4      5
  P2RX7 WILD-TYPE     89    156    133
D1363V5, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX7 MUTATED        6      2      1
  P2RX7 WILD-TYPE    176    131     71
D1363V6, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX7 MUTATED        2      4      5      1
  P2RX7 WILD-TYPE    110     92     87    185
D1363V7, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  P2RX7 MUTATED        3      3      3      0      1      1      1
  P2RX7 WILD-TYPE     57     47     46     40     62    124     98
D1363V8, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX7 MUTATED        7      1      0      5
  P2RX7 WILD-TYPE    123     77     68    191
D1363V9, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  P2RX7 MUTATED        4      2      0      4      2      1      0      0
  P2RX7 WILD-TYPE     36     60     28     76     67     47     43     28
                 vv
clus              CLUS_9
  P2RX7 MUTATED        0
  P2RX7 WILD-TYPE     74
D1363V10, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX7 MUTATED        0      0      0      1
  P2RX7 WILD-TYPE     33     31     27     18
D1363V11, multiclass
[1] "Remove cluster labels:" "P2RX7 MUTATED"         
clus
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-G5-6641 
"P2RX7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX7 MUTATED        0      0      1      0
  P2RX7 WILD-TYPE     54     10     23     22
D1363V12, multiclass
[1] "Remove cluster labels:" "P2RX7 MUTATED"         
clus
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-G5-6641 
"P2RX7 WILD-TYPE" 

Clustering(1364) Variable = RCOR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        3      0      1      1
  RCOR3 WILD-TYPE     43     58     63     42
D1364V1, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        3      1      1
  RCOR3 WILD-TYPE     48     82     76
D1364V2, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED       10      2      1      0
  RCOR3 WILD-TYPE    168    181    100     20
D1364V3, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        1      1      6
  RCOR3 WILD-TYPE     86     79     94
D1364V4, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        0      3      4
  RCOR3 WILD-TYPE     89    157    134
D1364V5, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        5      2      0
  RCOR3 WILD-TYPE    177    131     72
D1364V6, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        0      4      4      5
  RCOR3 WILD-TYPE    112     92     88    181
D1364V7, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RCOR3 MUTATED        0      1      6      0      1      2      3
  RCOR3 WILD-TYPE     60     49     43     40     62    123     96
D1364V8, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        6      1      0      5
  RCOR3 WILD-TYPE    124     77     68    191
D1364V9, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RCOR3 MUTATED        1      4      0      1      3      0      0      2
  RCOR3 WILD-TYPE     39     58     28     79     66     48     43     26
                 vv
clus              CLUS_9
  RCOR3 MUTATED        1
  RCOR3 WILD-TYPE     73
D1364V10, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        1      1      0      1
  RCOR3 WILD-TYPE     32     30     27     18
D1364V11, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        2      0      1      0
  RCOR3 WILD-TYPE     52     10     23     22
D1364V12, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1365) Variable = HMOX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMOX1 MUTATED        1      0      0      1
  HMOX1 WILD-TYPE     45     58     64     42
D1365V1, multiclass
[1] "Remove cluster labels:" "HMOX1 MUTATED"         
clus
  HMOX1 MUTATED HMOX1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AY-4071 
"HMOX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMOX1 MUTATED        1      1      0
  HMOX1 WILD-TYPE     50     82     77
D1365V2, multiclass
[1] "Remove cluster labels:" "HMOX1 MUTATED"         
clus
  HMOX1 MUTATED HMOX1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AY-4071 
"HMOX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMOX1 MUTATED        3      2      1      0
  HMOX1 WILD-TYPE    175    181    100     20
D1365V3, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMOX1 MUTATED        0      1      3
  HMOX1 WILD-TYPE     87     79     97
D1365V4, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMOX1 MUTATED        2      2      1
  HMOX1 WILD-TYPE     87    158    137
D1365V5, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HMOX1 MUTATED        3      2      0
  HMOX1 WILD-TYPE    179    131     72
D1365V6, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMOX1 MUTATED        1      3      0      2
  HMOX1 WILD-TYPE    111     93     92    184
D1365V7, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HMOX1 MUTATED        0      1      2      0      1      0      2
  HMOX1 WILD-TYPE     60     49     47     40     62    125     97
D1365V8, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMOX1 MUTATED        2      1      0      3
  HMOX1 WILD-TYPE    128     77     68    193
D1365V9, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HMOX1 MUTATED        1      1      1      0      3      0      0      0
  HMOX1 WILD-TYPE     39     61     27     80     66     48     43     28
                 vv
clus              CLUS_9
  HMOX1 MUTATED        0
  HMOX1 WILD-TYPE     74
D1365V10, multiclass
        clus
vv       HMOX1 MUTATED HMOX1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMOX1 MUTATED        0      0      0      1
  HMOX1 WILD-TYPE     33     31     27     18
D1365V11, multiclass
[1] "Remove cluster labels:" "HMOX1 MUTATED"         
clus
  HMOX1 MUTATED HMOX1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-G5-6641 
"HMOX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMOX1 MUTATED        0      0      1      0
  HMOX1 WILD-TYPE     54     10     23     22
D1365V12, multiclass
[1] "Remove cluster labels:" "HMOX1 MUTATED"         
clus
  HMOX1 MUTATED HMOX1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" "HMOX1 WILD-TYPE" 
     TCGA-G5-6641 
"HMOX1 WILD-TYPE" 

Clustering(1366) Variable = UCHL5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UCHL5 MUTATED        0      0      0      1
  UCHL5 WILD-TYPE     46     58     64     42
D1366V1, multiclass
[1] "Remove cluster labels:" "UCHL5 MUTATED"         
clus
  UCHL5 MUTATED UCHL5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UCHL5 MUTATED        0      0      1
  UCHL5 WILD-TYPE     51     83     76
D1366V2, multiclass
[1] "Remove cluster labels:" "UCHL5 MUTATED"         
clus
  UCHL5 MUTATED UCHL5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"UCHL5 WILD-TYPE" "UCHL5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UCHL5 MUTATED        3      2      0      0
  UCHL5 WILD-TYPE    175    181    101     20
D1366V3, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UCHL5 MUTATED        1      1      2
  UCHL5 WILD-TYPE     86     79     98
D1366V4, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UCHL5 MUTATED        0      4      0
  UCHL5 WILD-TYPE     89    156    138
D1366V5, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             0             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UCHL5 MUTATED        0      4      0
  UCHL5 WILD-TYPE    182    129     72
D1366V6, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             0             182
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UCHL5 MUTATED        1      2      0      2
  UCHL5 WILD-TYPE    111     94     92    184
D1366V7, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UCHL5 MUTATED        1      1      0      0      0      0      3
  UCHL5 WILD-TYPE     59     49     49     40     63    125     96
D1366V8, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UCHL5 MUTATED        2      1      0      2
  UCHL5 WILD-TYPE    128     77     68    194
D1366V9, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UCHL5 MUTATED        0      0      2      0      1      0      0      0
  UCHL5 WILD-TYPE     40     62     26     80     68     48     43     28
                 vv
clus              CLUS_9
  UCHL5 MUTATED        2
  UCHL5 WILD-TYPE     72
D1366V10, multiclass
        clus
vv       UCHL5 MUTATED UCHL5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UCHL5 MUTATED        0      0      0      0
  UCHL5 WILD-TYPE     33     31     27     19
D1366V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UCHL5 MUTATED        0      0      0      0
  UCHL5 WILD-TYPE     54     10     24     22
D1366V12, multiclass

Clustering(1367) Variable = NTRK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK2 MUTATED        1      0      0      3
  NTRK2 WILD-TYPE     45     58     64     40
D1367V1, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK2 MUTATED        1      2      1
  NTRK2 WILD-TYPE     50     81     76
D1367V2, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK2 MUTATED       14      6      4      0
  NTRK2 WILD-TYPE    164    177     97     20
D1367V3, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             6             177
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK2 MUTATED        7      7      7
  NTRK2 WILD-TYPE     80     73     93
D1367V4, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             7              73
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK2 MUTATED        5      8     10
  NTRK2 WILD-TYPE     84    152    128
D1367V5, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             8             152
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTRK2 MUTATED       10      9      4
  NTRK2 WILD-TYPE    172    124     68
D1367V6, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK2 MUTATED        8      3     10      4
  NTRK2 WILD-TYPE    104     93     82    182
D1367V7, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             3              93
  CLUS_3            10              82
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NTRK2 MUTATED        3      2      7      2      6      1      4
  NTRK2 WILD-TYPE     57     48     42     38     57    124     95
D1367V8, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             2              38
  CLUS_5             6              57
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK2 MUTATED       10      6      1      7
  NTRK2 WILD-TYPE    120     72     67    189
D1367V9, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NTRK2 MUTATED        4      6      3      4      3      2      0      1
  NTRK2 WILD-TYPE     36     56     25     76     66     46     43     27
                 vv
clus              CLUS_9
  NTRK2 MUTATED        1
  NTRK2 WILD-TYPE     73
D1367V10, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK2 MUTATED        1      1      0      1
  NTRK2 WILD-TYPE     32     30     27     18
D1367V11, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTRK2 MUTATED        0      1      1      1
  NTRK2 WILD-TYPE     54      9     23     21
D1367V12, multiclass
        clus
vv       NTRK2 MUTATED NTRK2 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1368) Variable = MFAP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFAP1 MUTATED        0      0      0      0
  MFAP1 WILD-TYPE     46     58     64     43
D1368V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFAP1 MUTATED        0      0      0
  MFAP1 WILD-TYPE     51     83     77
D1368V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFAP1 MUTATED        3      0      1      1
  MFAP1 WILD-TYPE    175    183    100     19
D1368V3, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFAP1 MUTATED        2      1      2
  MFAP1 WILD-TYPE     85     79     98
D1368V4, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFAP1 MUTATED        0      2      2
  MFAP1 WILD-TYPE     89    158    136
D1368V5, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFAP1 MUTATED        1      3      0
  MFAP1 WILD-TYPE    181    130     72
D1368V6, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFAP1 MUTATED        1      4      0      0
  MFAP1 WILD-TYPE    111     92     92    186
D1368V7, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             0              92
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFAP1 MUTATED        1      2      2      0      0      0      0
  MFAP1 WILD-TYPE     59     48     47     40     63    125     99
D1368V8, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFAP1 MUTATED        4      0      0      1
  MFAP1 WILD-TYPE    126     78     68    195
D1368V9, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MFAP1 MUTATED        0      0      1      1      2      0      0      0
  MFAP1 WILD-TYPE     40     62     27     79     67     48     43     28
                 vv
clus              CLUS_9
  MFAP1 MUTATED        1
  MFAP1 WILD-TYPE     73
D1368V10, multiclass
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFAP1 MUTATED        1      0      0      0
  MFAP1 WILD-TYPE     32     31     27     19
D1368V11, multiclass
[1] "Remove cluster labels:" "MFAP1 MUTATED"         
clus
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-G5-6641 
"MFAP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFAP1 MUTATED        1      0      0      0
  MFAP1 WILD-TYPE     53     10     24     22
D1368V12, multiclass
[1] "Remove cluster labels:" "MFAP1 MUTATED"         
clus
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-G5-6641 
"MFAP1 WILD-TYPE" 

Clustering(1369) Variable = RNF215 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF215 MUTATED        0      0      0      0
  RNF215 WILD-TYPE     46     58     64     43
D1369V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF215 MUTATED        0      0      0
  RNF215 WILD-TYPE     51     83     77
D1369V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF215 MUTATED        2      1      0      0
  RNF215 WILD-TYPE    176    182    101     20
D1369V3, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF215 MUTATED        1      0      2
  RNF215 WILD-TYPE     86     80     98
D1369V4, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF215 MUTATED        1      0      2
  RNF215 WILD-TYPE     88    160    136
D1369V5, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF215 MUTATED        2      1      0
  RNF215 WILD-TYPE    180    132     72
D1369V6, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF215 MUTATED        1      2      0      0
  RNF215 WILD-TYPE    111     94     92    186
D1369V7, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF215 MUTATED        0      0      1      2      0      0      0
  RNF215 WILD-TYPE     60     50     48     38     63    125     99
D1369V8, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF215 MUTATED        2      1      0      0
  RNF215 WILD-TYPE    128     77     68    196
D1369V9, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF215 MUTATED        2      0      0      0      0      0      1      0
  RNF215 WILD-TYPE     38     62     28     80     69     48     42     28
                  vv
clus               CLUS_9
  RNF215 MUTATED        0
  RNF215 WILD-TYPE     74
D1369V10, multiclass
        clus
vv       RNF215 MUTATED RNF215 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF215 MUTATED        0      0      0      0
  RNF215 WILD-TYPE     33     31     27     19
D1369V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF215 MUTATED        0      0      0      0
  RNF215 WILD-TYPE     54     10     24     22
D1369V12, multiclass

Clustering(1370) Variable = FANCD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        4      1      0      4
  FANCD2 WILD-TYPE     42     57     64     39
D1370V1, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        5      2      2
  FANCD2 WILD-TYPE     46     81     75
D1370V2, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED       14      2      1      1
  FANCD2 WILD-TYPE    164    181    100     19
D1370V3, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        3      1      5
  FANCD2 WILD-TYPE     84     79     95
D1370V4, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        2      4      7
  FANCD2 WILD-TYPE     87    156    131
D1370V5, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FANCD2 MUTATED        6      5      2
  FANCD2 WILD-TYPE    176    128     70
D1370V6, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        2      5      3      8
  FANCD2 WILD-TYPE    110     91     89    178
D1370V7, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FANCD2 MUTATED        2      0      5      3      0      2      6
  FANCD2 WILD-TYPE     58     50     44     37     63    123     93
D1370V8, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              3               37
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        6      1      1      9
  FANCD2 WILD-TYPE    124     77     67    187
D1370V9, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FANCD2 MUTATED        3      0      1      2      9      0      1      0
  FANCD2 WILD-TYPE     37     62     27     78     60     48     42     28
                  vv
clus               CLUS_9
  FANCD2 MUTATED        1
  FANCD2 WILD-TYPE     73
D1370V10, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        2      1      0      0
  FANCD2 WILD-TYPE     31     30     27     19
D1370V11, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCD2 MUTATED        3      0      0      0
  FANCD2 WILD-TYPE     51     10     24     22
D1370V12, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1371) Variable = CD34 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD34 MUTATED        1      0      0      0
  CD34 WILD-TYPE     45     58     64     43
D1371V1, multiclass
[1] "Remove cluster labels:" "CD34 MUTATED"          
clus
  CD34 MUTATED CD34 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD34 MUTATED        1      0      0
  CD34 WILD-TYPE     50     83     77
D1371V2, multiclass
[1] "Remove cluster labels:" "CD34 MUTATED"          
clus
  CD34 MUTATED CD34 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD34 MUTATED        4      0      2      0
  CD34 WILD-TYPE    174    183     99     20
D1371V3, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD34 MUTATED        3      0      2
  CD34 WILD-TYPE     84     80     98
D1371V4, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD34 MUTATED        1      1      2
  CD34 WILD-TYPE     88    159    136
D1371V5, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD34 MUTATED        1      2      1
  CD34 WILD-TYPE    181    131     71
D1371V6, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD34 MUTATED        0      3      2      1
  CD34 WILD-TYPE    112     93     90    185
D1371V7, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD34 MUTATED        0      3      0      0      2      0      1
  CD34 WILD-TYPE     60     47     49     40     61    125     98
D1371V8, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD34 MUTATED        2      2      0      2
  CD34 WILD-TYPE    128     76     68    194
D1371V9, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CD34 MUTATED        1      1      1      1      1      0      0      0      1
  CD34 WILD-TYPE     39     61     27     79     68     48     43     28     73
D1371V10, multiclass
        clus
vv       CD34 MUTATED CD34 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD34 MUTATED        0      1      0      0
  CD34 WILD-TYPE     33     30     27     19
D1371V11, multiclass
[1] "Remove cluster labels:" "CD34 MUTATED"          
clus
  CD34 MUTATED CD34 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3511 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-G5-6641 
"CD34 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD34 MUTATED        1      0      0      0
  CD34 WILD-TYPE     53     10     24     22
D1371V12, multiclass
[1] "Remove cluster labels:" "CD34 MUTATED"          
clus
  CD34 MUTATED CD34 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3511 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" "CD34 WILD-TYPE" 
    TCGA-G5-6641 
"CD34 WILD-TYPE" 

Clustering(1372) Variable = ZSWIM3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM3 MUTATED        2      2      0      2
  ZSWIM3 WILD-TYPE     44     56     64     41
D1372V1, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZSWIM3 MUTATED        3      3      0
  ZSWIM3 WILD-TYPE     48     80     77
D1372V2, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM3 MUTATED        8      4      1      0
  ZSWIM3 WILD-TYPE    170    179    100     20
D1372V3, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZSWIM3 MUTATED        0      1      6
  ZSWIM3 WILD-TYPE     87     79     94
D1372V4, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZSWIM3 MUTATED        3      2      5
  ZSWIM3 WILD-TYPE     86    158    133
D1372V5, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZSWIM3 MUTATED        6      2      2
  ZSWIM3 WILD-TYPE    176    131     70
D1372V6, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM3 MUTATED        1      4      2      6
  ZSWIM3 WILD-TYPE    111     92     90    180
D1372V7, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZSWIM3 MUTATED        0      2      3      1      1      2      4
  ZSWIM3 WILD-TYPE     60     48     46     39     62    123     95
D1372V8, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM3 MUTATED        4      1      1      6
  ZSWIM3 WILD-TYPE    126     77     67    190
D1372V9, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZSWIM3 MUTATED        2      1      2      1      4      0      1      0
  ZSWIM3 WILD-TYPE     38     61     26     79     65     48     42     28
                  vv
clus               CLUS_9
  ZSWIM3 MUTATED        1
  ZSWIM3 WILD-TYPE     73
D1372V10, multiclass
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM3 MUTATED        0      0      0      0
  ZSWIM3 WILD-TYPE     33     31     27     19
D1372V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSWIM3 MUTATED        0      0      0      0
  ZSWIM3 WILD-TYPE     54     10     24     22
D1372V12, multiclass

Clustering(1373) Variable = SLC16A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A2 MUTATED        2      1      0      0
  SLC16A2 WILD-TYPE     44     57     64     43
D1373V1, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A2 MUTATED        2      1      0
  SLC16A2 WILD-TYPE     49     82     77
D1373V2, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A2 MUTATED        3      3      2      0
  SLC16A2 WILD-TYPE    175    180     99     20
D1373V3, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               3               180
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A2 MUTATED        2      2      1
  SLC16A2 WILD-TYPE     85     78     99
D1373V4, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A2 MUTATED        2      2      1
  SLC16A2 WILD-TYPE     87    158    137
D1373V5, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A2 MUTATED        2      2      1
  SLC16A2 WILD-TYPE    180    131     71
D1373V6, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A2 MUTATED        2      1      2      3
  SLC16A2 WILD-TYPE    110     95     90    183
D1373V7, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC16A2 MUTATED        2      0      0      1      2      1      2
  SLC16A2 WILD-TYPE     58     50     49     39     61    124     97
D1373V8, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               0                49
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A2 MUTATED        2      1      3      2
  SLC16A2 WILD-TYPE    128     77     65    194
D1373V9, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               3                65
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC16A2 MUTATED        2      1      0      1      1      0      2      1
  SLC16A2 WILD-TYPE     38     61     28     79     68     48     41     27
                   vv
clus                CLUS_9
  SLC16A2 MUTATED        0
  SLC16A2 WILD-TYPE     74
D1373V10, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A2 MUTATED        0      1      1      1
  SLC16A2 WILD-TYPE     33     30     26     18
D1373V11, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A2 MUTATED        2      0      0      1
  SLC16A2 WILD-TYPE     52     10     24     21
D1373V12, multiclass
        clus
vv       SLC16A2 MUTATED SLC16A2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1374) Variable = DDHD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD2 MUTATED        2      0      0      1
  DDHD2 WILD-TYPE     44     58     64     42
D1374V1, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDHD2 MUTATED        3      0      0
  DDHD2 WILD-TYPE     48     83     77
D1374V2, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD2 MUTATED        8      2      1      0
  DDHD2 WILD-TYPE    170    181    100     20
D1374V3, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDHD2 MUTATED        2      4      2
  DDHD2 WILD-TYPE     85     76     98
D1374V4, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             4              76
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDHD2 MUTATED        1      4      5
  DDHD2 WILD-TYPE     88    156    133
D1374V5, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDHD2 MUTATED        4      3      3
  DDHD2 WILD-TYPE    178    130     69
D1374V6, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD2 MUTATED        3      2      3      3
  DDHD2 WILD-TYPE    109     94     89    183
D1374V7, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDHD2 MUTATED        2      2      3      0      1      0      3
  DDHD2 WILD-TYPE     58     48     46     40     62    125     96
D1374V8, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD2 MUTATED        5      1      1      4
  DDHD2 WILD-TYPE    125     77     67    192
D1374V9, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDHD2 MUTATED        1      1      1      1      5      1      1      0
  DDHD2 WILD-TYPE     39     61     27     79     64     47     42     28
                 vv
clus              CLUS_9
  DDHD2 MUTATED        0
  DDHD2 WILD-TYPE     74
D1374V10, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD2 MUTATED        1      0      1      1
  DDHD2 WILD-TYPE     32     31     26     18
D1374V11, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD2 MUTATED        1      0      2      0
  DDHD2 WILD-TYPE     53     10     22     22
D1374V12, multiclass
        clus
vv       DDHD2 MUTATED DDHD2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1375) Variable = GKN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GKN1 MUTATED        1      0      0      2
  GKN1 WILD-TYPE     45     58     64     41
D1375V1, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GKN1 MUTATED        0      0      3
  GKN1 WILD-TYPE     51     83     74
D1375V2, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            0             83
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GKN1 MUTATED        2      1      3      0
  GKN1 WILD-TYPE    176    182     98     20
D1375V3, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GKN1 MUTATED        1      1      1
  GKN1 WILD-TYPE     86     79     99
D1375V4, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GKN1 MUTATED        1      2      1
  GKN1 WILD-TYPE     88    158    137
D1375V5, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GKN1 MUTATED        2      2      0
  GKN1 WILD-TYPE    180    131     72
D1375V6, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GKN1 MUTATED        1      1      1      3
  GKN1 WILD-TYPE    111     95     91    183
D1375V7, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GKN1 MUTATED        2      1      0      1      0      0      2
  GKN1 WILD-TYPE     58     49     49     39     63    125     97
D1375V8, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GKN1 MUTATED        1      1      2      2
  GKN1 WILD-TYPE    129     77     66    194
D1375V9, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GKN1 MUTATED        1      0      1      1      1      0      1      1      0
  GKN1 WILD-TYPE     39     62     27     79     68     48     42     27     74
D1375V10, multiclass
        clus
vv       GKN1 MUTATED GKN1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GKN1 MUTATED        0      0      0      0
  GKN1 WILD-TYPE     33     31     27     19
D1375V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GKN1 MUTATED        0      0      0      0
  GKN1 WILD-TYPE     54     10     24     22
D1375V12, multiclass

Clustering(1376) Variable = F2R MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2R MUTATED        1      0      0      0
  F2R WILD-TYPE     45     58     64     43
D1376V1, multiclass
[1] "Remove cluster labels:" "F2R MUTATED"           
clus
  F2R MUTATED F2R WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  F2R MUTATED        1      0      0
  F2R WILD-TYPE     50     83     77
D1376V2, multiclass
[1] "Remove cluster labels:" "F2R MUTATED"           
clus
  F2R MUTATED F2R WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2R MUTATED        9      1      1      0
  F2R WILD-TYPE    169    182    100     20
D1376V3, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           9           169
  CLUS_2           1           182
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  F2R MUTATED        2      2      6
  F2R WILD-TYPE     85     78     94
D1376V4, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           2            85
  CLUS_2           2            78
  CLUS_3           6            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  F2R MUTATED        0      4      5
  F2R WILD-TYPE     89    156    133
D1376V5, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           0            89
  CLUS_2           4           156
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  F2R MUTATED        5      2      2
  F2R WILD-TYPE    177    131     70
D1376V6, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           5           177
  CLUS_2           2           131
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2R MUTATED        2      5      3      1
  F2R WILD-TYPE    110     91     89    185
D1376V7, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           2           110
  CLUS_2           5            91
  CLUS_3           3            89
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F2R MUTATED        1      2      3      2      2      0      1
  F2R WILD-TYPE     59     48     46     38     61    125     98
D1376V8, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           2            38
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2R MUTATED        7      1      1      2
  F2R WILD-TYPE    123     77     67    194
D1376V9, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           7           123
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  F2R MUTATED        2      2      0      2      3      1      1      0      0
  F2R WILD-TYPE     38     60     28     78     66     47     42     28     74
D1376V10, multiclass
        clus
vv       F2R MUTATED F2R WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           2            78
  CLUS_5           3            66
  CLUS_6           1            47
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2R MUTATED        1      0      0      0
  F2R WILD-TYPE     32     31     27     19
D1376V11, multiclass
[1] "Remove cluster labels:" "F2R MUTATED"           
clus
  F2R MUTATED F2R WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F2R MUTATED        0      0      0      1
  F2R WILD-TYPE     54     10     24     21
D1376V12, multiclass
[1] "Remove cluster labels:" "F2R MUTATED"           
clus
  F2R MUTATED F2R WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" "F2R WILD-TYPE" 

Clustering(1377) Variable = CYP20A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        1      0      1      0
  CYP20A1 WILD-TYPE     45     58     63     43
D1377V1, multiclass
[1] "Remove cluster labels:" "CYP20A1 MUTATED"       
clus
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3858        TCGA-AA-3860 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AY-4071 
"CYP20A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP20A1 MUTATED        1      1      0
  CYP20A1 WILD-TYPE     50     82     77
D1377V2, multiclass
[1] "Remove cluster labels:" "CYP20A1 MUTATED"       
clus
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3858        TCGA-AA-3860 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AY-4071 
"CYP20A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        7      0      0      1
  CYP20A1 WILD-TYPE    171    183    101     19
D1377V3, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP20A1 MUTATED        3      1      2
  CYP20A1 WILD-TYPE     84     79     98
D1377V4, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP20A1 MUTATED        1      2      3
  CYP20A1 WILD-TYPE     88    158    135
D1377V5, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP20A1 MUTATED        2      3      1
  CYP20A1 WILD-TYPE    180    130     71
D1377V6, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        1      3      2      2
  CYP20A1 WILD-TYPE    111     93     90    184
D1377V7, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP20A1 MUTATED        1      1      4      0      0      1      1
  CYP20A1 WILD-TYPE     59     49     45     40     63    124     98
D1377V8, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        3      2      0      3
  CYP20A1 WILD-TYPE    127     76     68    193
D1377V9, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP20A1 MUTATED        2      1      0      1      1      0      0      1
  CYP20A1 WILD-TYPE     38     61     28     79     68     48     43     27
                   vv
clus                CLUS_9
  CYP20A1 MUTATED        2
  CYP20A1 WILD-TYPE     72
D1377V10, multiclass
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        2      0      0      0
  CYP20A1 WILD-TYPE     31     31     27     19
D1377V11, multiclass
[1] "Remove cluster labels:" "CYP20A1 MUTATED"       
clus
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-4110 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-5403 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP20A1 MUTATED        2      0      0      0
  CYP20A1 WILD-TYPE     52     10     24     22
D1377V12, multiclass
[1] "Remove cluster labels:" "CYP20A1 MUTATED"       
clus
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-4110 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-5403 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 

Clustering(1378) Variable = ZP2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP2 MUTATED        3      0      1      2
  ZP2 WILD-TYPE     43     58     63     41
D1378V1, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP2 MUTATED        4      1      1
  ZP2 WILD-TYPE     47     82     76
D1378V2, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           4            47
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP2 MUTATED        9      3      2      0
  ZP2 WILD-TYPE    169    180     99     20
D1378V3, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           9           169
  CLUS_2           3           180
  CLUS_3           2            99
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP2 MUTATED        3      2      4
  ZP2 WILD-TYPE     84     78     96
D1378V4, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           3            84
  CLUS_2           2            78
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP2 MUTATED        1      6      5
  ZP2 WILD-TYPE     88    154    133
D1378V5, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           1            88
  CLUS_2           6           154
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP2 MUTATED        4      3      5
  ZP2 WILD-TYPE    178    130     67
D1378V6, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           4           178
  CLUS_2           3           130
  CLUS_3           5            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP2 MUTATED        4      2      3      5
  ZP2 WILD-TYPE    108     94     89    181
D1378V7, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           4           108
  CLUS_2           2            94
  CLUS_3           3            89
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZP2 MUTATED        4      1      2      0      1      1      5
  ZP2 WILD-TYPE     56     49     47     40     62    124     94
D1378V8, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           4            56
  CLUS_2           1            49
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP2 MUTATED        4      2      1      7
  ZP2 WILD-TYPE    126     76     67    189
D1378V9, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           4           126
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZP2 MUTATED        0      2      1      3      4      3      1      0      0
  ZP2 WILD-TYPE     40     60     27     77     65     45     42     28     74
D1378V10, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           0            40
  CLUS_2           2            60
  CLUS_3           1            27
  CLUS_4           3            77
  CLUS_5           4            65
  CLUS_6           3            45
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP2 MUTATED        0      1      1      1
  ZP2 WILD-TYPE     33     30     26     18
D1378V11, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           1            30
  CLUS_3           1            26
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP2 MUTATED        1      0      2      0
  ZP2 WILD-TYPE     53     10     22     22
D1378V12, multiclass
        clus
vv       ZP2 MUTATED ZP2 WILD-TYPE
  CLUS_1           1            53
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1379) Variable = RAB38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB38 MUTATED        1      0      0      0
  RAB38 WILD-TYPE     45     58     64     43
D1379V1, multiclass
[1] "Remove cluster labels:" "RAB38 MUTATED"         
clus
  RAB38 MUTATED RAB38 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2677      TCGA-A6-2678 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3809 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB38 MUTATED        1      0      0
  RAB38 WILD-TYPE     50     83     77
D1379V2, multiclass
[1] "Remove cluster labels:" "RAB38 MUTATED"         
clus
  RAB38 MUTATED RAB38 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2677      TCGA-A6-2678 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3809 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB38 MUTATED        4      0      1      0
  RAB38 WILD-TYPE    174    183    100     20
D1379V3, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB38 MUTATED        0      2      2
  RAB38 WILD-TYPE     87     78     98
D1379V4, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB38 MUTATED        0      3      1
  RAB38 WILD-TYPE     89    157    137
D1379V5, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB38 MUTATED        1      3      0
  RAB38 WILD-TYPE    181    130     72
D1379V6, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB38 MUTATED        2      2      0      1
  RAB38 WILD-TYPE    110     94     92    185
D1379V7, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB38 MUTATED        1      1      2      0      0      0      1
  RAB38 WILD-TYPE     59     49     47     40     63    125     98
D1379V8, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB38 MUTATED        4      0      0      1
  RAB38 WILD-TYPE    126     78     68    195
D1379V9, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB38 MUTATED        2      0      0      1      2      0      0      0
  RAB38 WILD-TYPE     38     62     28     79     67     48     43     28
                 vv
clus              CLUS_9
  RAB38 MUTATED        0
  RAB38 WILD-TYPE     74
D1379V10, multiclass
        clus
vv       RAB38 MUTATED RAB38 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB38 MUTATED        0      0      0      1
  RAB38 WILD-TYPE     33     31     27     18
D1379V11, multiclass
[1] "Remove cluster labels:" "RAB38 MUTATED"         
clus
  RAB38 MUTATED RAB38 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-G5-6641 
"RAB38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB38 MUTATED        0      0      1      0
  RAB38 WILD-TYPE     54     10     23     22
D1379V12, multiclass
[1] "Remove cluster labels:" "RAB38 MUTATED"         
clus
  RAB38 MUTATED RAB38 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" "RAB38 WILD-TYPE" 
     TCGA-G5-6641 
"RAB38 WILD-TYPE" 

Clustering(1380) Variable = TCF7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        1      0      1      3
  TCF7 WILD-TYPE     45     58     63     40
D1380V1, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        2      0      3
  TCF7 WILD-TYPE     49     83     74
D1380V2, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED       12      0      0      0
  TCF7 WILD-TYPE    166    183    101     20
D1380V3, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        1      0      6
  TCF7 WILD-TYPE     86     80     94
D1380V4, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        1      5      6
  TCF7 WILD-TYPE     88    155    132
D1380V5, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        5      6      1
  TCF7 WILD-TYPE    177    127     71
D1380V6, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        0      5      2      4
  TCF7 WILD-TYPE    112     91     90    182
D1380V7, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCF7 MUTATED        1      1      2      2      1      0      4
  TCF7 WILD-TYPE     59     49     47     38     62    125     95
D1380V8, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        4      1      0      6
  TCF7 WILD-TYPE    126     77     68    190
D1380V9, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TCF7 MUTATED        1      1      0      2      5      0      0      0      2
  TCF7 WILD-TYPE     39     61     28     78     64     48     43     28     72
D1380V10, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        0      0      0      2
  TCF7 WILD-TYPE     33     31     27     17
D1380V11, multiclass
[1] "Remove cluster labels:" "TCF7 MUTATED"          
clus
  TCF7 MUTATED TCF7 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6889     TCGA-AD-6901 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        1      0      1      0
  TCF7 WILD-TYPE     53     10     23     22
D1380V12, multiclass
[1] "Remove cluster labels:" "TCF7 MUTATED"          
clus
  TCF7 MUTATED TCF7 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6889     TCGA-AD-6901 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" "TCF7 WILD-TYPE" 

Clustering(1381) Variable = NUFIP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP1 MUTATED        0      0      0      1
  NUFIP1 WILD-TYPE     46     58     64     42
D1381V1, multiclass
[1] "Remove cluster labels:" "NUFIP1 MUTATED"        
clus
  NUFIP1 MUTATED NUFIP1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP1 MUTATED        0      1      0
  NUFIP1 WILD-TYPE     51     82     77
D1381V2, multiclass
[1] "Remove cluster labels:" "NUFIP1 MUTATED"        
clus
  NUFIP1 MUTATED NUFIP1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"NUFIP1 WILD-TYPE" "NUFIP1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP1 MUTATED        8      0      0      0
  NUFIP1 WILD-TYPE    170    183    101     20
D1381V3, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP1 MUTATED        3      0      3
  NUFIP1 WILD-TYPE     84     80     97
D1381V4, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP1 MUTATED        1      2      3
  NUFIP1 WILD-TYPE     88    158    135
D1381V5, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP1 MUTATED        1      5      0
  NUFIP1 WILD-TYPE    181    128     72
D1381V6, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP1 MUTATED        0      4      1      3
  NUFIP1 WILD-TYPE    112     92     91    183
D1381V7, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUFIP1 MUTATED        0      2      2      0      1      0      3
  NUFIP1 WILD-TYPE     60     48     47     40     62    125     96
D1381V8, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP1 MUTATED        2      1      0      5
  NUFIP1 WILD-TYPE    128     77     68    191
D1381V9, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUFIP1 MUTATED        0      1      1      1      3      0      0      0
  NUFIP1 WILD-TYPE     40     61     27     79     66     48     43     28
                  vv
clus               CLUS_9
  NUFIP1 MUTATED        2
  NUFIP1 WILD-TYPE     72
D1381V10, multiclass
        clus
vv       NUFIP1 MUTATED NUFIP1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP1 MUTATED        0      0      0      0
  NUFIP1 WILD-TYPE     33     31     27     19
D1381V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP1 MUTATED        0      0      0      0
  NUFIP1 WILD-TYPE     54     10     24     22
D1381V12, multiclass

Clustering(1382) Variable = OR7D4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7D4 MUTATED        1      0      0      1
  OR7D4 WILD-TYPE     45     58     64     42
D1382V1, multiclass
[1] "Remove cluster labels:" "OR7D4 MUTATED"         
clus
  OR7D4 MUTATED OR7D4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AY-4071 
"OR7D4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7D4 MUTATED        1      0      1
  OR7D4 WILD-TYPE     50     83     76
D1382V2, multiclass
[1] "Remove cluster labels:" "OR7D4 MUTATED"         
clus
  OR7D4 MUTATED OR7D4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" "OR7D4 WILD-TYPE" 
     TCGA-AY-4071 
"OR7D4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7D4 MUTATED        6      3      0      1
  OR7D4 WILD-TYPE    172    180    101     19
D1382V3, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7D4 MUTATED        3      3      2
  OR7D4 WILD-TYPE     84     77     98
D1382V4, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7D4 MUTATED        0      6      3
  OR7D4 WILD-TYPE     89    154    135
D1382V5, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7D4 MUTATED        3      4      2
  OR7D4 WILD-TYPE    179    129     70
D1382V6, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7D4 MUTATED        4      1      2      3
  OR7D4 WILD-TYPE    108     95     90    183
D1382V7, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR7D4 MUTATED        3      2      0      1      2      0      2
  OR7D4 WILD-TYPE     57     48     49     39     61    125     97
D1382V8, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7D4 MUTATED        3      2      2      3
  OR7D4 WILD-TYPE    127     76     66    193
D1382V9, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR7D4 MUTATED        2      1      0      0      2      3      1      0
  OR7D4 WILD-TYPE     38     61     28     80     67     45     42     28
                 vv
clus              CLUS_9
  OR7D4 MUTATED        1
  OR7D4 WILD-TYPE     73
D1382V10, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7D4 MUTATED        3      1      0      0
  OR7D4 WILD-TYPE     30     30     27     19
D1382V11, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7D4 MUTATED        1      0      0      3
  OR7D4 WILD-TYPE     53     10     24     19
D1382V12, multiclass
        clus
vv       OR7D4 MUTATED OR7D4 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1383) Variable = NUPL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        2      0      0      2
  NUPL2 WILD-TYPE     44     58     64     41
D1383V1, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        2      1      1
  NUPL2 WILD-TYPE     49     82     76
D1383V2, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        7      2      0      1
  NUPL2 WILD-TYPE    171    181    101     19
D1383V3, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        4      1      2
  NUPL2 WILD-TYPE     83     79     98
D1383V4, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        1      4      5
  NUPL2 WILD-TYPE     88    156    133
D1383V5, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        5      5      0
  NUPL2 WILD-TYPE    177    128     72
D1383V6, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        2      2      2      5
  NUPL2 WILD-TYPE    110     94     90    181
D1383V7, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUPL2 MUTATED        1      0      3      1      1      1      4
  NUPL2 WILD-TYPE     59     50     46     39     62    124     95
D1383V8, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        3      2      1      3
  NUPL2 WILD-TYPE    127     76     67    193
D1383V9, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUPL2 MUTATED        0      3      1      0      2      1      1      0
  NUPL2 WILD-TYPE     40     59     27     80     67     47     42     28
                 vv
clus              CLUS_9
  NUPL2 MUTATED        1
  NUPL2 WILD-TYPE     73
D1383V10, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        2      1      0      1
  NUPL2 WILD-TYPE     31     30     27     18
D1383V11, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        3      0      0      1
  NUPL2 WILD-TYPE     51     10     24     21
D1383V12, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1384) Variable = GNA14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA14 MUTATED        4      0      0      2
  GNA14 WILD-TYPE     42     58     64     41
D1384V1, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA14 MUTATED        5      0      1
  GNA14 WILD-TYPE     46     83     76
D1384V2, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA14 MUTATED        9      1      1      2
  GNA14 WILD-TYPE    169    182    100     18
D1384V3, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA14 MUTATED        2      1      4
  GNA14 WILD-TYPE     85     79     96
D1384V4, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA14 MUTATED        0      5      2
  GNA14 WILD-TYPE     89    155    136
D1384V5, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA14 MUTATED        3      4      0
  GNA14 WILD-TYPE    179    129     72
D1384V6, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA14 MUTATED        2      2      2      7
  GNA14 WILD-TYPE    110     94     90    179
D1384V7, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNA14 MUTATED        4      0      2      0      1      0      6
  GNA14 WILD-TYPE     56     50     47     40     62    125     93
D1384V8, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA14 MUTATED        5      1      0      7
  GNA14 WILD-TYPE    125     77     68    189
D1384V9, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GNA14 MUTATED        1      0      1      2      6      1      0      1
  GNA14 WILD-TYPE     39     62     27     78     63     47     43     27
                 vv
clus              CLUS_9
  GNA14 MUTATED        1
  GNA14 WILD-TYPE     73
D1384V10, multiclass
        clus
vv       GNA14 MUTATED GNA14 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA14 MUTATED        1      1      0      0
  GNA14 WILD-TYPE     32     30     27     19
D1384V11, multiclass
[1] "Remove cluster labels:" "GNA14 MUTATED"         
clus
  GNA14 MUTATED GNA14 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA14 MUTATED        1      0      0      1
  GNA14 WILD-TYPE     53     10     24     21
D1384V12, multiclass
[1] "Remove cluster labels:" "GNA14 MUTATED"         
clus
  GNA14 MUTATED GNA14 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" "GNA14 WILD-TYPE" 

Clustering(1385) Variable = PREX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PREX2 MUTATED        4      2      0      3
  PREX2 WILD-TYPE     42     56     64     40
D1385V1, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PREX2 MUTATED        6      2      1
  PREX2 WILD-TYPE     45     81     76
D1385V2, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PREX2 MUTATED       18     10      4      1
  PREX2 WILD-TYPE    160    173     97     19
D1385V3, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1            18             160
  CLUS_2            10             173
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PREX2 MUTATED        6      6     12
  PREX2 WILD-TYPE     81     74     88
D1385V4, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             6              74
  CLUS_3            12              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PREX2 MUTATED        6      7     15
  PREX2 WILD-TYPE     83    153    123
D1385V5, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             7             153
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PREX2 MUTATED       15      9      4
  PREX2 WILD-TYPE    167    124     68
D1385V6, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1            15             167
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PREX2 MUTATED       13      6      6      9
  PREX2 WILD-TYPE     99     90     86    177
D1385V7, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1            13              99
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PREX2 MUTATED        5      4      4      4      7      1      9
  PREX2 WILD-TYPE     55     46     45     36     56    124     90
D1385V8, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             4              36
  CLUS_5             7              56
  CLUS_6             1             124
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PREX2 MUTATED       15      3      5     11
  PREX2 WILD-TYPE    115     75     63    185
D1385V9, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1            15             115
  CLUS_2             3              75
  CLUS_3             5              63
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PREX2 MUTATED        3      4      2      5     10      5      1      1
  PREX2 WILD-TYPE     37     58     26     75     59     43     42     27
                 vv
clus              CLUS_9
  PREX2 MUTATED        3
  PREX2 WILD-TYPE     71
D1385V10, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5            10              59
  CLUS_6             5              43
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PREX2 MUTATED        2      1      3      3
  PREX2 WILD-TYPE     31     30     24     16
D1385V11, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             3              24
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PREX2 MUTATED        4      1      1      3
  PREX2 WILD-TYPE     50      9     23     19
D1385V12, multiclass
        clus
vv       PREX2 MUTATED PREX2 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1386) Variable = NEB MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEB MUTATED       11      1      1      4
  NEB WILD-TYPE     35     57     63     39
D1386V1, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          11            35
  CLUS_2           1            57
  CLUS_3           1            63
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NEB MUTATED       10      4      3
  NEB WILD-TYPE     41     79     74
D1386V2, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          10            41
  CLUS_2           4            79
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEB MUTATED       41     14      8      3
  NEB WILD-TYPE    137    169     93     17
D1386V3, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          41           137
  CLUS_2          14           169
  CLUS_3           8            93
  CLUS_4           3            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NEB MUTATED       19      8     22
  NEB WILD-TYPE     68     72     78
D1386V4, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          19            68
  CLUS_2           8            72
  CLUS_3          22            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NEB MUTATED        6     27     23
  NEB WILD-TYPE     83    133    115
D1386V5, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1           6            83
  CLUS_2          27           133
  CLUS_3          23           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NEB MUTATED       21     25     10
  NEB WILD-TYPE    161    108     62
D1386V6, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          21           161
  CLUS_2          25           108
  CLUS_3          10            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEB MUTATED        9     20     18     19
  NEB WILD-TYPE    103     76     74    167
D1386V7, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1           9           103
  CLUS_2          20            76
  CLUS_3          18            74
  CLUS_4          19           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEB MUTATED        7     17     12      5      6      5     14
  NEB WILD-TYPE     53     33     37     35     57    120     85
D1386V8, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1           7            53
  CLUS_2          17            33
  CLUS_3          12            37
  CLUS_4           5            35
  CLUS_5           6            57
  CLUS_6           5           120
  CLUS_7          14            85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEB MUTATED       28     10      4     23
  NEB WILD-TYPE    102     68     64    173
D1386V9, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          28           102
  CLUS_2          10            68
  CLUS_3           4            64
  CLUS_4          23           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NEB MUTATED       12      9      6      7     16      1      6      3      5
  NEB WILD-TYPE     28     53     22     73     53     47     37     25     69
D1386V10, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          12            28
  CLUS_2           9            53
  CLUS_3           6            22
  CLUS_4           7            73
  CLUS_5          16            53
  CLUS_6           1            47
  CLUS_7           6            37
  CLUS_8           3            25
  CLUS_9           5            69
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEB MUTATED        4      4      3      9
  NEB WILD-TYPE     29     27     24     10
D1386V11, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1           4            29
  CLUS_2           4            27
  CLUS_3           3            24
  CLUS_4           9            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEB MUTATED       11      0      8      1
  NEB WILD-TYPE     43     10     16     21
D1386V12, multiclass
        clus
vv       NEB MUTATED NEB WILD-TYPE
  CLUS_1          11            43
  CLUS_2           0            10
  CLUS_3           8            16
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1387) Variable = DTX3L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3L MUTATED        2      0      0      1
  DTX3L WILD-TYPE     44     58     64     42
D1387V1, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DTX3L MUTATED        1      2      0
  DTX3L WILD-TYPE     50     81     77
D1387V2, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3L MUTATED        8      3      0      0
  DTX3L WILD-TYPE    170    180    101     20
D1387V3, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DTX3L MUTATED        3      2      3
  DTX3L WILD-TYPE     84     78     97
D1387V4, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DTX3L MUTATED        0      3      4
  DTX3L WILD-TYPE     89    157    134
D1387V5, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DTX3L MUTATED        4      3      0
  DTX3L WILD-TYPE    178    130     72
D1387V6, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3L MUTATED        2      4      2      3
  DTX3L WILD-TYPE    110     92     90    183
D1387V7, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DTX3L MUTATED        2      2      4      0      0      1      2
  DTX3L WILD-TYPE     58     48     45     40     63    124     97
D1387V8, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3L MUTATED        5      1      1      4
  DTX3L WILD-TYPE    125     77     67    192
D1387V9, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DTX3L MUTATED        0      0      2      3      3      1      2      0
  DTX3L WILD-TYPE     40     62     26     77     66     47     41     28
                 vv
clus              CLUS_9
  DTX3L MUTATED        0
  DTX3L WILD-TYPE     74
D1387V10, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3L MUTATED        1      0      0      2
  DTX3L WILD-TYPE     32     31     27     17
D1387V11, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3L MUTATED        1      0      1      1
  DTX3L WILD-TYPE     53     10     23     21
D1387V12, multiclass
        clus
vv       DTX3L MUTATED DTX3L WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1388) Variable = ARHGEF1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF1 MUTATED        3      0      2      0
  ARHGEF1 WILD-TYPE     43     58     62     43
D1388V1, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               2                62
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF1 MUTATED        3      1      1
  ARHGEF1 WILD-TYPE     48     82     76
D1388V2, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF1 MUTATED        9      2      2      1
  ARHGEF1 WILD-TYPE    169    181     99     19
D1388V3, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF1 MUTATED        2      1      7
  ARHGEF1 WILD-TYPE     85     79     93
D1388V4, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF1 MUTATED        2      4      6
  ARHGEF1 WILD-TYPE     87    156    132
D1388V5, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF1 MUTATED        7      2      3
  ARHGEF1 WILD-TYPE    175    131     69
D1388V6, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               2               131
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF1 MUTATED        2      5      3      5
  ARHGEF1 WILD-TYPE    110     91     89    181
D1388V7, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF1 MUTATED        1      3      6      0      0      2      3
  ARHGEF1 WILD-TYPE     59     47     43     40     63    123     96
D1388V8, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF1 MUTATED        7      1      2      5
  ARHGEF1 WILD-TYPE    123     77     66    191
D1388V9, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               1                77
  CLUS_3               2                66
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGEF1 MUTATED        2      2      2      0      6      1      1      0
  ARHGEF1 WILD-TYPE     38     60     26     80     63     47     42     28
                   vv
clus                CLUS_9
  ARHGEF1 MUTATED        1
  ARHGEF1 WILD-TYPE     73
D1388V10, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF1 MUTATED        1      0      1      3
  ARHGEF1 WILD-TYPE     32     31     26     16
D1388V11, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF1 MUTATED        3      0      2      0
  ARHGEF1 WILD-TYPE     51     10     22     22
D1388V12, multiclass
        clus
vv       ARHGEF1 MUTATED ARHGEF1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1389) Variable = VPS33A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS33A MUTATED        3      0      0      1
  VPS33A WILD-TYPE     43     58     64     42
D1389V1, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS33A MUTATED        4      0      0
  VPS33A WILD-TYPE     47     83     77
D1389V2, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS33A MUTATED        8      0      0      0
  VPS33A WILD-TYPE    170    183    101     20
D1389V3, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS33A MUTATED        0      0      4
  VPS33A WILD-TYPE     87     80     96
D1389V4, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              0               87
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS33A MUTATED        0      2      5
  VPS33A WILD-TYPE     89    158    133
D1389V5, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS33A MUTATED        6      1      0
  VPS33A WILD-TYPE    176    132     72
D1389V6, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS33A MUTATED        0      2      3      3
  VPS33A WILD-TYPE    112     94     89    183
D1389V7, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VPS33A MUTATED        0      0      4      0      0      0      4
  VPS33A WILD-TYPE     60     50     45     40     63    125     95
D1389V8, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS33A MUTATED        1      1      0      6
  VPS33A WILD-TYPE    129     77     68    190
D1389V9, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VPS33A MUTATED        0      2      0      0      5      0      0      1
  VPS33A WILD-TYPE     40     60     28     80     64     48     43     27
                  vv
clus               CLUS_9
  VPS33A MUTATED        0
  VPS33A WILD-TYPE     74
D1389V10, multiclass
        clus
vv       VPS33A MUTATED VPS33A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS33A MUTATED        0      0      0      1
  VPS33A WILD-TYPE     33     31     27     18
D1389V11, multiclass
[1] "Remove cluster labels:" "VPS33A MUTATED"        
clus
  VPS33A MUTATED VPS33A WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-G5-6641 
"VPS33A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS33A MUTATED        1      0      0      0
  VPS33A WILD-TYPE     53     10     24     22
D1389V12, multiclass
[1] "Remove cluster labels:" "VPS33A MUTATED"        
clus
  VPS33A MUTATED VPS33A WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" "VPS33A WILD-TYPE" 
      TCGA-G5-6641 
"VPS33A WILD-TYPE" 

Clustering(1390) Variable = FSTL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSTL4 MUTATED        1      0      1      1
  FSTL4 WILD-TYPE     45     58     63     42
D1390V1, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FSTL4 MUTATED        1      0      2
  FSTL4 WILD-TYPE     50     83     75
D1390V2, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSTL4 MUTATED       14      1      2      0
  FSTL4 WILD-TYPE    164    182     99     20
D1390V3, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FSTL4 MUTATED        6      0      8
  FSTL4 WILD-TYPE     81     80     92
D1390V4, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FSTL4 MUTATED        0      4     10
  FSTL4 WILD-TYPE     89    156    128
D1390V5, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FSTL4 MUTATED       11      3      0
  FSTL4 WILD-TYPE    171    130     72
D1390V6, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSTL4 MUTATED        0      6      7      4
  FSTL4 WILD-TYPE    112     90     85    182
D1390V7, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FSTL4 MUTATED        1      2      9      1      0      1      3
  FSTL4 WILD-TYPE     59     48     40     39     63    124     96
D1390V8, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSTL4 MUTATED       10      2      1      4
  FSTL4 WILD-TYPE    120     76     67    192
D1390V9, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FSTL4 MUTATED        4      4      1      1      3      1      1      1
  FSTL4 WILD-TYPE     36     58     27     79     66     47     42     27
                 vv
clus              CLUS_9
  FSTL4 MUTATED        1
  FSTL4 WILD-TYPE     73
D1390V10, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSTL4 MUTATED        2      0      1      2
  FSTL4 WILD-TYPE     31     31     26     17
D1390V11, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FSTL4 MUTATED        4      0      1      0
  FSTL4 WILD-TYPE     50     10     23     22
D1390V12, multiclass
        clus
vv       FSTL4 MUTATED FSTL4 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1391) Variable = PTPRG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRG MUTATED        4      0      1      4
  PTPRG WILD-TYPE     42     58     63     39
D1391V1, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRG MUTATED        5      1      3
  PTPRG WILD-TYPE     46     82     74
D1391V2, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRG MUTATED       18      6      0      1
  PTPRG WILD-TYPE    160    177    101     19
D1391V3, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1            18             160
  CLUS_2             6             177
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRG MUTATED        7      0      8
  PTPRG WILD-TYPE     80     80     92
D1391V4, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             7              80
  CLUS_2             0              80
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRG MUTATED        5     11      5
  PTPRG WILD-TYPE     84    149    133
D1391V5, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             5              84
  CLUS_2            11             149
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRG MUTATED        8     10      3
  PTPRG WILD-TYPE    174    123     69
D1391V6, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             8             174
  CLUS_2            10             123
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRG MUTATED        4      7      4     10
  PTPRG WILD-TYPE    108     89     88    176
D1391V7, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             4             108
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPRG MUTATED        4      5      6      0      0      2      8
  PTPRG WILD-TYPE     56     45     43     40     63    123     91
D1391V8, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             4              56
  CLUS_2             5              45
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRG MUTATED        9      5      0      9
  PTPRG WILD-TYPE    121     73     68    187
D1391V9, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             9             121
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPRG MUTATED        2      2      1      3     10      2      2      0
  PTPRG WILD-TYPE     38     60     27     77     59     46     41     28
                 vv
clus              CLUS_9
  PTPRG MUTATED        1
  PTPRG WILD-TYPE     73
D1391V10, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5            10              59
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRG MUTATED        3      0      0      2
  PTPRG WILD-TYPE     30     31     27     17
D1391V11, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRG MUTATED        4      0      1      0
  PTPRG WILD-TYPE     50     10     23     22
D1391V12, multiclass
        clus
vv       PTPRG MUTATED PTPRG WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1392) Variable = ATF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATF2 MUTATED        0      0      0      1
  ATF2 WILD-TYPE     46     58     64     42
D1392V1, multiclass
[1] "Remove cluster labels:" "ATF2 MUTATED"          
clus
  ATF2 MUTATED ATF2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATF2 MUTATED        0      0      1
  ATF2 WILD-TYPE     51     83     76
D1392V2, multiclass
[1] "Remove cluster labels:" "ATF2 MUTATED"          
clus
  ATF2 MUTATED ATF2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATF2 MUTATED        3      2      1      0
  ATF2 WILD-TYPE    175    181    100     20
D1392V3, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATF2 MUTATED        1      1      3
  ATF2 WILD-TYPE     86     79     97
D1392V4, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATF2 MUTATED        1      4      2
  ATF2 WILD-TYPE     88    156    136
D1392V5, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATF2 MUTATED        4      2      1
  ATF2 WILD-TYPE    178    131     71
D1392V6, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATF2 MUTATED        3      1      2      1
  ATF2 WILD-TYPE    109     95     90    185
D1392V7, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATF2 MUTATED        4      2      1      0      0      0      0
  ATF2 WILD-TYPE     56     48     48     40     63    125     99
D1392V8, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATF2 MUTATED        1      3      1      2
  ATF2 WILD-TYPE    129     75     67    194
D1392V9, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATF2 MUTATED        0      2      1      2      1      1      0      0      0
  ATF2 WILD-TYPE     40     60     27     78     68     47     43     28     74
D1392V10, multiclass
        clus
vv       ATF2 MUTATED ATF2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATF2 MUTATED        0      0      0      1
  ATF2 WILD-TYPE     33     31     27     18
D1392V11, multiclass
[1] "Remove cluster labels:" "ATF2 MUTATED"          
clus
  ATF2 MUTATED ATF2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-G5-6641 
"ATF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATF2 MUTATED        1      0      0      0
  ATF2 WILD-TYPE     53     10     24     22
D1392V12, multiclass
[1] "Remove cluster labels:" "ATF2 MUTATED"          
clus
  ATF2 MUTATED ATF2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" "ATF2 WILD-TYPE" 
    TCGA-G5-6641 
"ATF2 WILD-TYPE" 

Clustering(1393) Variable = CREG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREG2 MUTATED        1      0      1      0
  CREG2 WILD-TYPE     45     58     63     43
D1393V1, multiclass
[1] "Remove cluster labels:" "CREG2 MUTATED"         
clus
  CREG2 MUTATED CREG2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3556 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AY-4071 
"CREG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CREG2 MUTATED        1      1      0
  CREG2 WILD-TYPE     50     82     77
D1393V2, multiclass
[1] "Remove cluster labels:" "CREG2 MUTATED"         
clus
  CREG2 MUTATED CREG2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3517 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3556 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AY-4071 
"CREG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREG2 MUTATED        1      2      2      0
  CREG2 WILD-TYPE    177    181     99     20
D1393V3, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             1             177
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CREG2 MUTATED        1      1      1
  CREG2 WILD-TYPE     86     79     99
D1393V4, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CREG2 MUTATED        1      0      2
  CREG2 WILD-TYPE     88    160    136
D1393V5, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CREG2 MUTATED        3      0      0
  CREG2 WILD-TYPE    179    133     72
D1393V6, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREG2 MUTATED        2      1      0      2
  CREG2 WILD-TYPE    110     95     92    184
D1393V7, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CREG2 MUTATED        1      1      0      0      1      0      2
  CREG2 WILD-TYPE     59     49     49     40     62    125     97
D1393V8, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREG2 MUTATED        2      0      1      2
  CREG2 WILD-TYPE    128     78     67    194
D1393V9, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CREG2 MUTATED        2      0      0      0      2      0      1      0
  CREG2 WILD-TYPE     38     62     28     80     67     48     42     28
                 vv
clus              CLUS_9
  CREG2 MUTATED        0
  CREG2 WILD-TYPE     74
D1393V10, multiclass
        clus
vv       CREG2 MUTATED CREG2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREG2 MUTATED        0      0      1      0
  CREG2 WILD-TYPE     33     31     26     19
D1393V11, multiclass
[1] "Remove cluster labels:" "CREG2 MUTATED"         
clus
  CREG2 MUTATED CREG2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-G5-6641 
"CREG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREG2 MUTATED        0      0      1      0
  CREG2 WILD-TYPE     54     10     23     22
D1393V12, multiclass
[1] "Remove cluster labels:" "CREG2 MUTATED"         
clus
  CREG2 MUTATED CREG2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" "CREG2 WILD-TYPE" 
     TCGA-G5-6641 
"CREG2 WILD-TYPE" 

Clustering(1394) Variable = GTF2A1L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2A1L MUTATED        2      2      2      3
  GTF2A1L WILD-TYPE     44     56     62     40
D1394V1, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               2                44
  CLUS_2               2                56
  CLUS_3               2                62
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GTF2A1L MUTATED        3      4      2
  GTF2A1L WILD-TYPE     48     79     75
D1394V2, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               3                48
  CLUS_2               4                79
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2A1L MUTATED        6      8      4      3
  GTF2A1L WILD-TYPE    172    175     97     17
D1394V3, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               6               172
  CLUS_2               8               175
  CLUS_3               4                97
  CLUS_4               3                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GTF2A1L MUTATED        4      5      3
  GTF2A1L WILD-TYPE     83     75     97
D1394V4, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               4                83
  CLUS_2               5                75
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GTF2A1L MUTATED        8      6      1
  GTF2A1L WILD-TYPE     81    154    137
D1394V5, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               8                81
  CLUS_2               6               154
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GTF2A1L MUTATED        6      5      4
  GTF2A1L WILD-TYPE    176    128     68
D1394V6, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2A1L MUTATED        8      3      3      7
  GTF2A1L WILD-TYPE    104     93     89    179
D1394V7, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               8               104
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTF2A1L MUTATED        4      2      2      2      3      5      3
  GTF2A1L WILD-TYPE     56     48     47     38     60    120     96
D1394V8, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               4                56
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               3                60
  CLUS_6               5               120
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2A1L MUTATED        6      2      6      5
  GTF2A1L WILD-TYPE    124     76     62    191
D1394V9, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               6               124
  CLUS_2               2                76
  CLUS_3               6                62
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GTF2A1L MUTATED        1      3      2      3      3      1      4      1
  GTF2A1L WILD-TYPE     39     59     26     77     66     47     39     27
                   vv
clus                CLUS_9
  GTF2A1L MUTATED        1
  GTF2A1L WILD-TYPE     73
D1394V10, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               4                39
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2A1L MUTATED        2      1      3      1
  GTF2A1L WILD-TYPE     31     30     24     18
D1394V11, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               3                24
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF2A1L MUTATED        3      0      2      2
  GTF2A1L WILD-TYPE     51     10     22     20
D1394V12, multiclass
        clus
vv       GTF2A1L MUTATED GTF2A1L WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1395) Variable = MALT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MALT1 MUTATED        4      0      0      3
  MALT1 WILD-TYPE     42     58     64     40
D1395V1, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MALT1 MUTATED        5      1      1
  MALT1 WILD-TYPE     46     82     76
D1395V2, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MALT1 MUTATED        8      1      1      1
  MALT1 WILD-TYPE    170    182    100     19
D1395V3, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MALT1 MUTATED        1      0      4
  MALT1 WILD-TYPE     86     80     96
D1395V4, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MALT1 MUTATED        3      3      1
  MALT1 WILD-TYPE     86    157    137
D1395V5, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MALT1 MUTATED        2      3      2
  MALT1 WILD-TYPE    180    130     70
D1395V6, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MALT1 MUTATED        0      3      2      7
  MALT1 WILD-TYPE    112     93     90    179
D1395V7, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MALT1 MUTATED        1      1      2      1      1      0      6
  MALT1 WILD-TYPE     59     49     47     39     62    125     93
D1395V8, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MALT1 MUTATED        3      1      0      8
  MALT1 WILD-TYPE    127     77     68    188
D1395V9, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MALT1 MUTATED        2      0      1      1      6      0      1      1
  MALT1 WILD-TYPE     38     62     27     79     63     48     42     27
                 vv
clus              CLUS_9
  MALT1 MUTATED        0
  MALT1 WILD-TYPE     74
D1395V10, multiclass
        clus
vv       MALT1 MUTATED MALT1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MALT1 MUTATED        2      0      0      0
  MALT1 WILD-TYPE     31     31     27     19
D1395V11, multiclass
[1] "Remove cluster labels:" "MALT1 MUTATED"         
clus
  MALT1 MUTATED MALT1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MALT1 MUTATED        2      0      0      0
  MALT1 WILD-TYPE     52     10     24     22
D1395V12, multiclass
[1] "Remove cluster labels:" "MALT1 MUTATED"         
clus
  MALT1 MUTATED MALT1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" "MALT1 WILD-TYPE" 

Clustering(1396) Variable = PSMD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD6 MUTATED        1      0      0      1
  PSMD6 WILD-TYPE     45     58     64     42
D1396V1, multiclass
[1] "Remove cluster labels:" "PSMD6 MUTATED"         
clus
  PSMD6 MUTATED PSMD6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AY-4071 
"PSMD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMD6 MUTATED        1      0      1
  PSMD6 WILD-TYPE     50     83     76
D1396V2, multiclass
[1] "Remove cluster labels:" "PSMD6 MUTATED"         
clus
  PSMD6 MUTATED PSMD6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AY-4071 
"PSMD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD6 MUTATED        8      0      0      0
  PSMD6 WILD-TYPE    170    183    101     20
D1396V3, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMD6 MUTATED        1      1      4
  PSMD6 WILD-TYPE     86     79     96
D1396V4, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMD6 MUTATED        0      3      1
  PSMD6 WILD-TYPE     89    157    137
D1396V5, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMD6 MUTATED        1      2      1
  PSMD6 WILD-TYPE    181    131     71
D1396V6, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD6 MUTATED        1      3      2      2
  PSMD6 WILD-TYPE    111     93     90    184
D1396V7, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMD6 MUTATED        2      1      2      1      1      0      1
  PSMD6 WILD-TYPE     58     49     47     39     62    125     98
D1396V8, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD6 MUTATED        3      2      1      2
  PSMD6 WILD-TYPE    127     76     67    194
D1396V9, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PSMD6 MUTATED        1      2      0      0      3      0      2      0
  PSMD6 WILD-TYPE     39     60     28     80     66     48     41     28
                 vv
clus              CLUS_9
  PSMD6 MUTATED        0
  PSMD6 WILD-TYPE     74
D1396V10, multiclass
        clus
vv       PSMD6 MUTATED PSMD6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD6 MUTATED        0      0      1      0
  PSMD6 WILD-TYPE     33     31     26     19
D1396V11, multiclass
[1] "Remove cluster labels:" "PSMD6 MUTATED"         
clus
  PSMD6 MUTATED PSMD6 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-G5-6641 
"PSMD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD6 MUTATED        0      0      1      0
  PSMD6 WILD-TYPE     54     10     23     22
D1396V12, multiclass
[1] "Remove cluster labels:" "PSMD6 MUTATED"         
clus
  PSMD6 MUTATED PSMD6 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" "PSMD6 WILD-TYPE" 
     TCGA-G5-6641 
"PSMD6 WILD-TYPE" 

Clustering(1397) Variable = DLEC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEC1 MUTATED        2      0      0      1
  DLEC1 WILD-TYPE     44     58     64     42
D1397V1, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DLEC1 MUTATED        2      1      0
  DLEC1 WILD-TYPE     49     82     77
D1397V2, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEC1 MUTATED       14      4      1      0
  DLEC1 WILD-TYPE    164    179    100     20
D1397V3, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DLEC1 MUTATED        4      3      8
  DLEC1 WILD-TYPE     83     77     92
D1397V4, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DLEC1 MUTATED        3      6      6
  DLEC1 WILD-TYPE     86    154    132
D1397V5, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DLEC1 MUTATED        6      5      4
  DLEC1 WILD-TYPE    176    128     68
D1397V6, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEC1 MUTATED        3      6      6      4
  DLEC1 WILD-TYPE    109     90     86    182
D1397V7, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLEC1 MUTATED        2      1      6      3      3      0      4
  DLEC1 WILD-TYPE     58     49     43     37     60    125     95
D1397V8, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEC1 MUTATED        8      4      1      6
  DLEC1 WILD-TYPE    122     74     67    190
D1397V9, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DLEC1 MUTATED        3      6      1      2      4      1      1      1
  DLEC1 WILD-TYPE     37     56     27     78     65     47     42     27
                 vv
clus              CLUS_9
  DLEC1 MUTATED        0
  DLEC1 WILD-TYPE     74
D1397V10, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEC1 MUTATED        0      1      1      3
  DLEC1 WILD-TYPE     33     30     26     16
D1397V11, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEC1 MUTATED        3      1      0      1
  DLEC1 WILD-TYPE     51      9     24     21
D1397V12, multiclass
        clus
vv       DLEC1 MUTATED DLEC1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1398) Variable = DPP8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP8 MUTATED        4      0      0      2
  DPP8 WILD-TYPE     42     58     64     41
D1398V1, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPP8 MUTATED        4      2      0
  DPP8 WILD-TYPE     47     81     77
D1398V2, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP8 MUTATED       12      1      1      0
  DPP8 WILD-TYPE    166    182    100     20
D1398V3, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPP8 MUTATED        3      0      3
  DPP8 WILD-TYPE     84     80     97
D1398V4, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPP8 MUTATED        2      6      3
  DPP8 WILD-TYPE     87    154    135
D1398V5, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPP8 MUTATED        3      6      2
  DPP8 WILD-TYPE    179    127     70
D1398V6, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP8 MUTATED        0      3      2      9
  DPP8 WILD-TYPE    112     93     90    177
D1398V7, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DPP8 MUTATED        0      2      2      0      0      3      7
  DPP8 WILD-TYPE     60     48     47     40     63    122     92
D1398V8, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            3            122
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP8 MUTATED        4      0      1      9
  DPP8 WILD-TYPE    126     78     67    187
D1398V9, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DPP8 MUTATED        0      2      2      1      5      1      0      1      2
  DPP8 WILD-TYPE     40     60     26     79     64     47     43     27     72
D1398V10, multiclass
        clus
vv       DPP8 MUTATED DPP8 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP8 MUTATED        0      0      0      2
  DPP8 WILD-TYPE     33     31     27     17
D1398V11, multiclass
[1] "Remove cluster labels:" "DPP8 MUTATED"          
clus
  DPP8 MUTATED DPP8 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP8 MUTATED        1      0      1      0
  DPP8 WILD-TYPE     53     10     23     22
D1398V12, multiclass
[1] "Remove cluster labels:" "DPP8 MUTATED"          
clus
  DPP8 MUTATED DPP8 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" "DPP8 WILD-TYPE" 

Clustering(1399) Variable = CAPRIN1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN1 MUTATED        2      1      0      1
  CAPRIN1 WILD-TYPE     44     57     64     42
D1399V1, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN1 MUTATED        2      0      2
  CAPRIN1 WILD-TYPE     49     83     75
D1399V2, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN1 MUTATED        8      3      0      1
  CAPRIN1 WILD-TYPE    170    180    101     19
D1399V3, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN1 MUTATED        0      1      7
  CAPRIN1 WILD-TYPE     87     79     93
D1399V4, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN1 MUTATED        1      7      3
  CAPRIN1 WILD-TYPE     88    153    135
D1399V5, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               7               153
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN1 MUTATED        2      6      3
  CAPRIN1 WILD-TYPE    180    127     69
D1399V6, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               6               127
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN1 MUTATED        1      3      3      5
  CAPRIN1 WILD-TYPE    111     93     89    181
D1399V7, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CAPRIN1 MUTATED        1      2      3      0      1      0      5
  CAPRIN1 WILD-TYPE     59     48     46     40     62    125     94
D1399V8, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN1 MUTATED        3      1      1      7
  CAPRIN1 WILD-TYPE    127     77     67    189
D1399V9, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CAPRIN1 MUTATED        1      0      0      2      8      0      1      0
  CAPRIN1 WILD-TYPE     39     62     28     78     61     48     42     28
                   vv
clus                CLUS_9
  CAPRIN1 MUTATED        0
  CAPRIN1 WILD-TYPE     74
D1399V10, multiclass
        clus
vv       CAPRIN1 MUTATED CAPRIN1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN1 MUTATED        1      0      0      0
  CAPRIN1 WILD-TYPE     32     31     27     19
D1399V11, multiclass
[1] "Remove cluster labels:" "CAPRIN1 MUTATED"       
clus
  CAPRIN1 MUTATED CAPRIN1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-G5-6641 
"CAPRIN1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN1 MUTATED        1      0      0      0
  CAPRIN1 WILD-TYPE     53     10     24     22
D1399V12, multiclass
[1] "Remove cluster labels:" "CAPRIN1 MUTATED"       
clus
  CAPRIN1 MUTATED CAPRIN1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" "CAPRIN1 WILD-TYPE" 
       TCGA-G5-6641 
"CAPRIN1 WILD-TYPE" 

Clustering(1400) Variable = MTA2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTA2 MUTATED        4      0      1      0
  MTA2 WILD-TYPE     42     58     63     43
D1400V1, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTA2 MUTATED        4      1      0
  MTA2 WILD-TYPE     47     82     77
D1400V2, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTA2 MUTATED        8      2      2      0
  MTA2 WILD-TYPE    170    181     99     20
D1400V3, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTA2 MUTATED        3      0      4
  MTA2 WILD-TYPE     84     80     96
D1400V4, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTA2 MUTATED        4      2      4
  MTA2 WILD-TYPE     85    158    134
D1400V5, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTA2 MUTATED        5      1      4
  MTA2 WILD-TYPE    177    132     68
D1400V6, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTA2 MUTATED        1      3      3      5
  MTA2 WILD-TYPE    111     93     89    181
D1400V7, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTA2 MUTATED        0      0      4      1      2      1      4
  MTA2 WILD-TYPE     60     50     45     39     61    124     95
D1400V8, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTA2 MUTATED        3      2      1      6
  MTA2 WILD-TYPE    127     76     67    190
D1400V9, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTA2 MUTATED        2      2      0      0      7      0      0      0      1
  MTA2 WILD-TYPE     38     60     28     80     62     48     43     28     73
D1400V10, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTA2 MUTATED        1      1      0      1
  MTA2 WILD-TYPE     32     30     27     18
D1400V11, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTA2 MUTATED        3      0      0      0
  MTA2 WILD-TYPE     51     10     24     22
D1400V12, multiclass
        clus
vv       MTA2 MUTATED MTA2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1401) Variable = GFRA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFRA4 MUTATED        0      0      0      1
  GFRA4 WILD-TYPE     46     58     64     42
D1401V1, multiclass
[1] "Remove cluster labels:" "GFRA4 MUTATED"         
clus
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFRA4 MUTATED        1      0      0
  GFRA4 WILD-TYPE     50     83     77
D1401V2, multiclass
[1] "Remove cluster labels:" "GFRA4 MUTATED"         
clus
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFRA4 MUTATED        3      0      0      0
  GFRA4 WILD-TYPE    175    183    101     20
D1401V3, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFRA4 MUTATED        2      0      0
  GFRA4 WILD-TYPE     85     80    100
D1401V4, multiclass
[1] "Remove cluster labels:" "GFRA4 MUTATED"         
clus
  GFRA4 MUTATED GFRA4 WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3511 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662      TCGA-AA-3663 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713      TCGA-AD-5900 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889      TCGA-AD-6890 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901      TCGA-AD-6963 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2693 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742      TCGA-AG-A01W 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02N 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4681 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407      TCGA-AZ-6598 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-5862      TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6307 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" "GFRA4 WILD-TYPE" 
     TCGA-G5-6641 
"GFRA4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFRA4 MUTATED        1      1      1
  GFRA4 WILD-TYPE     88    159    137
D1401V5, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFRA4 MUTATED        1      1      1
  GFRA4 WILD-TYPE    181    132     71
D1401V6, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFRA4 MUTATED        0      1      0      2
  GFRA4 WILD-TYPE    112     95     92    184
D1401V7, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GFRA4 MUTATED        0      1      0      0      0      0      2
  GFRA4 WILD-TYPE     60     49     49     40     63    125     97
D1401V8, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFRA4 MUTATED        1      0      0      2
  GFRA4 WILD-TYPE    129     78     68    194
D1401V9, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GFRA4 MUTATED        0      0      1      0      1      0      0      0
  GFRA4 WILD-TYPE     40     62     27     80     68     48     43     28
                 vv
clus              CLUS_9
  GFRA4 MUTATED        1
  GFRA4 WILD-TYPE     73
D1401V10, multiclass
        clus
vv       GFRA4 MUTATED GFRA4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFRA4 MUTATED        0      0      0      0
  GFRA4 WILD-TYPE     33     31     27     19
D1401V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFRA4 MUTATED        0      0      0      0
  GFRA4 WILD-TYPE     54     10     24     22
D1401V12, multiclass

Clustering(1402) Variable = FGD4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD4 MUTATED        1      1      1      1
  FGD4 WILD-TYPE     45     57     63     42
D1402V1, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD4 MUTATED        0      3      1
  FGD4 WILD-TYPE     51     80     76
D1402V2, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD4 MUTATED        4      4      2      0
  FGD4 WILD-TYPE    174    179     99     20
D1402V3, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD4 MUTATED        2      2      2
  FGD4 WILD-TYPE     85     78     98
D1402V4, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD4 MUTATED        1      4      4
  FGD4 WILD-TYPE     88    156    134
D1402V5, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGD4 MUTATED        5      3      1
  FGD4 WILD-TYPE    177    130     71
D1402V6, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD4 MUTATED        1      2      3      4
  FGD4 WILD-TYPE    111     94     89    182
D1402V7, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FGD4 MUTATED        3      1      1      1      0      3      1
  FGD4 WILD-TYPE     57     49     48     39     63    122     98
D1402V8, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            3            122
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD4 MUTATED        2      1      2      5
  FGD4 WILD-TYPE    128     77     66    191
D1402V9, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FGD4 MUTATED        1      1      0      2      2      1      2      0      1
  FGD4 WILD-TYPE     39     61     28     78     67     47     41     28     73
D1402V10, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD4 MUTATED        1      1      1      1
  FGD4 WILD-TYPE     32     30     26     18
D1402V11, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGD4 MUTATED        1      0      1      2
  FGD4 WILD-TYPE     53     10     23     20
D1402V12, multiclass
        clus
vv       FGD4 MUTATED FGD4 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1403) Variable = HPS6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS6 MUTATED        1      0      0      2
  HPS6 WILD-TYPE     45     58     64     41
D1403V1, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS6 MUTATED        2      0      1
  HPS6 WILD-TYPE     49     83     76
D1403V2, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS6 MUTATED        6      0      1      0
  HPS6 WILD-TYPE    172    183    100     20
D1403V3, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS6 MUTATED        0      0      3
  HPS6 WILD-TYPE     87     80     97
D1403V4, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS6 MUTATED        0      5      1
  HPS6 WILD-TYPE     89    155    137
D1403V5, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPS6 MUTATED        1      4      1
  HPS6 WILD-TYPE    181    129     71
D1403V6, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS6 MUTATED        0      2      1      4
  HPS6 WILD-TYPE    112     94     91    182
D1403V7, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HPS6 MUTATED        1      0      3      0      0      1      2
  HPS6 WILD-TYPE     59     50     46     40     63    124     97
D1403V8, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS6 MUTATED        2      0      1      4
  HPS6 WILD-TYPE    128     78     67    192
D1403V9, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HPS6 MUTATED        1      0      0      0      5      1      0      0      0
  HPS6 WILD-TYPE     39     62     28     80     64     47     43     28     74
D1403V10, multiclass
        clus
vv       HPS6 MUTATED HPS6 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS6 MUTATED        0      0      0      1
  HPS6 WILD-TYPE     33     31     27     18
D1403V11, multiclass
[1] "Remove cluster labels:" "HPS6 MUTATED"          
clus
  HPS6 MUTATED HPS6 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-G5-6641 
"HPS6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPS6 MUTATED        0      0      1      0
  HPS6 WILD-TYPE     54     10     23     22
D1403V12, multiclass
[1] "Remove cluster labels:" "HPS6 MUTATED"          
clus
  HPS6 MUTATED HPS6 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" "HPS6 WILD-TYPE" 
    TCGA-G5-6641 
"HPS6 WILD-TYPE" 

Clustering(1404) Variable = AP4B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        1      0      0      1
  AP4B1 WILD-TYPE     45     58     64     42
D1404V1, multiclass
[1] "Remove cluster labels:" "AP4B1 MUTATED"         
clus
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AY-4071 
"AP4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        1      1      0
  AP4B1 WILD-TYPE     50     82     77
D1404V2, multiclass
[1] "Remove cluster labels:" "AP4B1 MUTATED"         
clus
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AY-4071 
"AP4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        8      1      3      0
  AP4B1 WILD-TYPE    170    182     98     20
D1404V3, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        3      2      5
  AP4B1 WILD-TYPE     84     78     95
D1404V4, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        1      6      2
  AP4B1 WILD-TYPE     88    154    136
D1404V5, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP4B1 MUTATED        1      6      2
  AP4B1 WILD-TYPE    181    127     70
D1404V6, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        3      4      2      3
  AP4B1 WILD-TYPE    109     92     90    183
D1404V7, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP4B1 MUTATED        2      1      4      1      1      0      3
  AP4B1 WILD-TYPE     58     49     45     39     62    125     96
D1404V8, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        6      1      1      4
  AP4B1 WILD-TYPE    124     77     67    192
D1404V9, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AP4B1 MUTATED        4      1      3      1      2      0      0      0
  AP4B1 WILD-TYPE     36     61     25     79     67     48     43     28
                 vv
clus              CLUS_9
  AP4B1 MUTATED        1
  AP4B1 WILD-TYPE     73
D1404V10, multiclass
        clus
vv       AP4B1 MUTATED AP4B1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             1              61
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        1      0      0      0
  AP4B1 WILD-TYPE     32     31     27     19
D1404V11, multiclass
[1] "Remove cluster labels:" "AP4B1 MUTATED"         
clus
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G5-6641 
"AP4B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP4B1 MUTATED        0      0      1      0
  AP4B1 WILD-TYPE     54     10     23     22
D1404V12, multiclass
[1] "Remove cluster labels:" "AP4B1 MUTATED"         
clus
  AP4B1 MUTATED AP4B1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" "AP4B1 WILD-TYPE" 
     TCGA-G5-6641 
"AP4B1 WILD-TYPE" 

Clustering(1405) Variable = STK38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        0      0      1      1
  STK38 WILD-TYPE     46     58     63     42
D1405V1, multiclass
[1] "Remove cluster labels:" "STK38 MUTATED"         
clus
  STK38 MUTATED STK38 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3858 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AY-4071 
"STK38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        0      1      1
  STK38 WILD-TYPE     51     82     76
D1405V2, multiclass
[1] "Remove cluster labels:" "STK38 MUTATED"         
clus
  STK38 MUTATED STK38 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3858 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" "STK38 WILD-TYPE" 
     TCGA-AY-4071 
"STK38 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        7      3      0      1
  STK38 WILD-TYPE    171    180    101     19
D1405V3, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        4      0      5
  STK38 WILD-TYPE     83     80     95
D1405V4, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        2      6      2
  STK38 WILD-TYPE     87    154    136
D1405V5, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        2      4      4
  STK38 WILD-TYPE    180    129     68
D1405V6, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        0      6      3      2
  STK38 WILD-TYPE    112     90     89    184
D1405V7, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK38 MUTATED        1      5      1      2      1      1      0
  STK38 WILD-TYPE     59     45     48     38     62    124     99
D1405V8, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             5              45
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        6      2      1      2
  STK38 WILD-TYPE    124     76     67    194
D1405V9, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STK38 MUTATED        2      1      1      1      1      0      4      0
  STK38 WILD-TYPE     38     61     27     79     68     48     39     28
                 vv
clus              CLUS_9
  STK38 MUTATED        1
  STK38 WILD-TYPE     73
D1405V10, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        3      0      0      1
  STK38 WILD-TYPE     30     31     27     18
D1405V11, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        3      0      0      1
  STK38 WILD-TYPE     51     10     24     21
D1405V12, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1406) Variable = PRKCD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        3      0      0      0
  PRKCD WILD-TYPE     43     58     64     43
D1406V1, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCD MUTATED        2      1      0
  PRKCD WILD-TYPE     49     82     77
D1406V2, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED       11      0      1      0
  PRKCD WILD-TYPE    167    183    100     20
D1406V3, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1            11             167
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCD MUTATED        3      0      6
  PRKCD WILD-TYPE     84     80     94
D1406V4, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCD MUTATED        0      3      8
  PRKCD WILD-TYPE     89    157    130
D1406V5, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCD MUTATED        7      3      1
  PRKCD WILD-TYPE    175    130     71
D1406V6, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        0      4      5      4
  PRKCD WILD-TYPE    112     92     87    182
D1406V7, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKCD MUTATED        0      2      5      2      0      1      3
  PRKCD WILD-TYPE     60     48     44     38     63    124     96
D1406V8, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        6      2      0      5
  PRKCD WILD-TYPE    124     76     68    191
D1406V9, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKCD MUTATED        3      4      0      1      5      0      0      0
  PRKCD WILD-TYPE     37     58     28     79     64     48     43     28
                 vv
clus              CLUS_9
  PRKCD MUTATED        0
  PRKCD WILD-TYPE     74
D1406V10, multiclass
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        1      0      0      1
  PRKCD WILD-TYPE     32     31     27     18
D1406V11, multiclass
[1] "Remove cluster labels:" "PRKCD MUTATED"         
clus
  PRKCD MUTATED PRKCD WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901      TCGA-AD-6963 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCD MUTATED        2      0      0      0
  PRKCD WILD-TYPE     52     10     24     22
D1406V12, multiclass
[1] "Remove cluster labels:" "PRKCD MUTATED"         
clus
  PRKCD MUTATED PRKCD WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901      TCGA-AD-6963 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-4110 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 

Clustering(1407) Variable = HIST1H2BC MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BC MUTATED        0      0      0      1
  HIST1H2BC WILD-TYPE     46     58     64     42
D1407V1, multiclass
[1] "Remove cluster labels:" "HIST1H2BC MUTATED"     
clus
  HIST1H2BC MUTATED HIST1H2BC WILD-TYPE 
                  1                 210 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A017          TCGA-AA-A01D 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01Q          TCGA-AA-A024 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02W          TCGA-AF-2689 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3574          TCGA-AG-3575 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3578          TCGA-AG-3580          TCGA-AG-3581 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3584 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3586          TCGA-AG-3587          TCGA-AG-3593 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3594          TCGA-AG-3598          TCGA-AG-3599 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3600          TCGA-AG-3601          TCGA-AG-3602 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3605          TCGA-AG-3608          TCGA-AG-3609 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3611          TCGA-AG-3612          TCGA-AG-3726 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3881 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3882          TCGA-AG-3883          TCGA-AG-3885 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3890          TCGA-AG-3892 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3896 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3898          TCGA-AG-3901          TCGA-AG-3902 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3909          TCGA-AG-3999          TCGA-AG-4001 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A002          TCGA-AG-A008 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A025 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02X 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A032          TCGA-AY-4070          TCGA-AY-4071 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BC MUTATED        0      1      0
  HIST1H2BC WILD-TYPE     51     82     77
D1407V2, multiclass
[1] "Remove cluster labels:" "HIST1H2BC MUTATED"     
clus
  HIST1H2BC MUTATED HIST1H2BC WILD-TYPE 
                  1                 210 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A017          TCGA-AA-A01D 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01Q          TCGA-AA-A024 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02W          TCGA-AF-2689 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3574          TCGA-AG-3575 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3578          TCGA-AG-3580          TCGA-AG-3581 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3584 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3586          TCGA-AG-3587          TCGA-AG-3593 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3594          TCGA-AG-3598          TCGA-AG-3599 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3600          TCGA-AG-3601          TCGA-AG-3602 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3605          TCGA-AG-3608          TCGA-AG-3609 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3611          TCGA-AG-3612          TCGA-AG-3726 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3881 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3882          TCGA-AG-3883          TCGA-AG-3885 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3890          TCGA-AG-3892 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3896 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3898          TCGA-AG-3901          TCGA-AG-3902 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3909          TCGA-AG-3999          TCGA-AG-4001 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A002          TCGA-AG-A008 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A025 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02X 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-A032          TCGA-AY-4070          TCGA-AY-4071 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BC MUTATED        3      0      1      0
  HIST1H2BC WILD-TYPE    175    183    100     20
D1407V3, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 3                 175
  CLUS_2                 0                 183
  CLUS_3                 1                 100
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BC MUTATED        1      0      2
  HIST1H2BC WILD-TYPE     86     80     98
D1407V4, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 1                  86
  CLUS_2                 0                  80
  CLUS_3                 2                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BC MUTATED        0      3      1
  HIST1H2BC WILD-TYPE     89    157    137
D1407V5, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 3                 157
  CLUS_3                 1                 137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  HIST1H2BC MUTATED        1      3      0
  HIST1H2BC WILD-TYPE    181    130     72
D1407V6, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 1                 181
  CLUS_2                 3                 130
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BC MUTATED        0      1      1      2
  HIST1H2BC WILD-TYPE    112     95     91    184
D1407V7, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 0                 112
  CLUS_2                 1                  95
  CLUS_3                 1                  91
  CLUS_4                 2                 184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H2BC MUTATED        0      0      2      0      0      0      2
  HIST1H2BC WILD-TYPE     60     50     47     40     63    125     97
D1407V8, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 0                  50
  CLUS_3                 2                  47
  CLUS_4                 0                  40
  CLUS_5                 0                  63
  CLUS_6                 0                 125
  CLUS_7                 2                  97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BC MUTATED        2      0      0      2
  HIST1H2BC WILD-TYPE    128     78     68    194
D1407V9, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 2                 128
  CLUS_2                 0                  78
  CLUS_3                 0                  68
  CLUS_4                 2                 194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H2BC MUTATED        1      0      1      0      1      0      0      0
  HIST1H2BC WILD-TYPE     39     62     27     80     68     48     43     28
                     vv
clus                  CLUS_9
  HIST1H2BC MUTATED        1
  HIST1H2BC WILD-TYPE     73
D1407V10, multiclass
        clus
vv       HIST1H2BC MUTATED HIST1H2BC WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 0                  62
  CLUS_3                 1                  27
  CLUS_4                 0                  80
  CLUS_5                 1                  68
  CLUS_6                 0                  48
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BC MUTATED        1      0      0      0
  HIST1H2BC WILD-TYPE     32     31     27     19
D1407V11, multiclass
[1] "Remove cluster labels:" "HIST1H2BC MUTATED"     
clus
  HIST1H2BC MUTATED HIST1H2BC WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6600 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AZ-6607          TCGA-CA-6718          TCGA-CA-6719 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-5916          TCGA-CK-6748 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-5860          TCGA-CM-6167 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CM-6674          TCGA-CM-6676          TCGA-CM-6677 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-6533          TCGA-D5-6534 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6922          TCGA-D5-6924 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6157 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6681          TCGA-DC-6682 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0XD          TCGA-DM-A0XF 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D7          TCGA-DM-A1D8 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1HA 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DM-A282          TCGA-DM-A285          TCGA-DM-A28F 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DG 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EI-6506          TCGA-EI-6507 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6704          TCGA-F4-6805 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F4-6807          TCGA-F4-6808          TCGA-F4-6809 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F5-6464          TCGA-F5-6465          TCGA-F5-6571 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F5-6702          TCGA-F5-6811          TCGA-F5-6812 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-G5-6641 
"HIST1H2BC WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H2BC MUTATED        1      0      0      0
  HIST1H2BC WILD-TYPE     53     10     24     22
D1407V12, multiclass
[1] "Remove cluster labels:" "HIST1H2BC MUTATED"     
clus
  HIST1H2BC MUTATED HIST1H2BC WILD-TYPE 
                  1                 109 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6600 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-AZ-6607          TCGA-CA-6718          TCGA-CA-6719 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-5916          TCGA-CK-6748 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-5860          TCGA-CM-6167 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CM-6674          TCGA-CM-6676          TCGA-CM-6677 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-6533          TCGA-D5-6534 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6922          TCGA-D5-6924 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6157 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6681          TCGA-DC-6682 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0XD          TCGA-DM-A0XF 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D7          TCGA-DM-A1D8 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1HA 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DM-A282          TCGA-DM-A285          TCGA-DM-A28F 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DG 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EI-6506          TCGA-EI-6507 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6704          TCGA-F4-6805 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F4-6807          TCGA-F4-6808          TCGA-F4-6809 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F5-6464          TCGA-F5-6465          TCGA-F5-6571 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-F5-6702          TCGA-F5-6811          TCGA-F5-6812 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6306          TCGA-G4-6309 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6628          TCGA-G5-6235 
"HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" "HIST1H2BC WILD-TYPE" 
         TCGA-G5-6641 
"HIST1H2BC WILD-TYPE" 

Clustering(1408) Variable = RIMS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMS2 MUTATED        5      0      1      6
  RIMS2 WILD-TYPE     41     58     63     37
D1408V1, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIMS2 MUTATED        6      2      4
  RIMS2 WILD-TYPE     45     81     73
D1408V2, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMS2 MUTATED       24      9      6      1
  RIMS2 WILD-TYPE    154    174     95     19
D1408V3, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            24             154
  CLUS_2             9             174
  CLUS_3             6              95
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIMS2 MUTATED       11      6     11
  RIMS2 WILD-TYPE     76     74     89
D1408V4, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            11              76
  CLUS_2             6              74
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIMS2 MUTATED        4     11     16
  RIMS2 WILD-TYPE     85    149    122
D1408V5, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            11             149
  CLUS_3            16             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RIMS2 MUTATED       17     11      3
  RIMS2 WILD-TYPE    165    122     69
D1408V6, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            17             165
  CLUS_2            11             122
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMS2 MUTATED        9     13      8     10
  RIMS2 WILD-TYPE    103     83     84    176
D1408V7, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             9             103
  CLUS_2            13              83
  CLUS_3             8              84
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RIMS2 MUTATED        9      6      9      2      3      2      9
  RIMS2 WILD-TYPE     51     44     40     38     60    123     90
D1408V8, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             9              51
  CLUS_2             6              44
  CLUS_3             9              40
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMS2 MUTATED       16      8      2     13
  RIMS2 WILD-TYPE    114     70     66    183
D1408V9, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            16             114
  CLUS_2             8              70
  CLUS_3             2              66
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RIMS2 MUTATED        5      5      2      6      9      4      3      3
  RIMS2 WILD-TYPE     35     57     26     74     60     44     40     25
                 vv
clus              CLUS_9
  RIMS2 MUTATED        2
  RIMS2 WILD-TYPE     72
D1408V10, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             6              74
  CLUS_5             9              60
  CLUS_6             4              44
  CLUS_7             3              40
  CLUS_8             3              25
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMS2 MUTATED        3      2      2      4
  RIMS2 WILD-TYPE     30     29     25     15
D1408V11, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMS2 MUTATED        6      0      3      2
  RIMS2 WILD-TYPE     48     10     21     20
D1408V12, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1409) Variable = LEMD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      0      0      0
  LEMD1 WILD-TYPE     46     58     64     43
D1409V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        0      0      0
  LEMD1 WILD-TYPE     51     83     77
D1409V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        3      0      0      0
  LEMD1 WILD-TYPE    175    183    101     20
D1409V3, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        0      0      3
  LEMD1 WILD-TYPE     87     80     97
D1409V4, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        0      1      1
  LEMD1 WILD-TYPE     89    159    137
D1409V5, multiclass
[1] "Remove cluster labels:" "LEMD1 MUTATED"         
clus
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655      TCGA-AA-3664 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681      TCGA-AA-3688 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697      TCGA-AA-3710 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715      TCGA-AA-3811 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6928      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G5-6641 
"LEMD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        1      1      0
  LEMD1 WILD-TYPE    181    132     72
D1409V6, multiclass
[1] "Remove cluster labels:" "LEMD1 MUTATED"         
clus
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655      TCGA-AA-3664 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681      TCGA-AA-3688 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697      TCGA-AA-3710 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715      TCGA-AA-3811 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-D5-6928      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" "LEMD1 WILD-TYPE" 
     TCGA-G5-6641 
"LEMD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      2      1      0
  LEMD1 WILD-TYPE    112     94     91    186
D1409V7, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LEMD1 MUTATED        0      0      3      0      0      0      0
  LEMD1 WILD-TYPE     60     50     46     40     63    125     99
D1409V8, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        1      1      0      1
  LEMD1 WILD-TYPE    129     77     68    195
D1409V9, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LEMD1 MUTATED        1      1      0      0      1      0      0      0
  LEMD1 WILD-TYPE     39     61     28     80     68     48     43     28
                 vv
clus              CLUS_9
  LEMD1 MUTATED        0
  LEMD1 WILD-TYPE     74
D1409V10, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      0      0      0
  LEMD1 WILD-TYPE     33     31     27     19
D1409V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      0      0      0
  LEMD1 WILD-TYPE     54     10     24     22
D1409V12, multiclass

Clustering(1410) Variable = RC3H2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RC3H2 MUTATED        0      0      0      2
  RC3H2 WILD-TYPE     46     58     64     41
D1410V1, multiclass
[1] "Remove cluster labels:" "RC3H2 MUTATED"         
clus
  RC3H2 MUTATED RC3H2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AY-4071 
"RC3H2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RC3H2 MUTATED        1      0      1
  RC3H2 WILD-TYPE     50     83     76
D1410V2, multiclass
[1] "Remove cluster labels:" "RC3H2 MUTATED"         
clus
  RC3H2 MUTATED RC3H2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" "RC3H2 WILD-TYPE" 
     TCGA-AY-4071 
"RC3H2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RC3H2 MUTATED        6      2      2      0
  RC3H2 WILD-TYPE    172    181     99     20
D1410V3, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RC3H2 MUTATED        3      1      4
  RC3H2 WILD-TYPE     84     79     96
D1410V4, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RC3H2 MUTATED        2      3      5
  RC3H2 WILD-TYPE     87    157    133
D1410V5, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RC3H2 MUTATED        6      2      2
  RC3H2 WILD-TYPE    176    131     70
D1410V6, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RC3H2 MUTATED        1      3      4      2
  RC3H2 WILD-TYPE    111     93     88    184
D1410V7, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RC3H2 MUTATED        1      2      3      0      3      0      1
  RC3H2 WILD-TYPE     59     48     46     40     60    125     98
D1410V8, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RC3H2 MUTATED        4      4      0      2
  RC3H2 WILD-TYPE    126     74     68    194
D1410V9, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RC3H2 MUTATED        1      2      1      0      3      1      2      0
  RC3H2 WILD-TYPE     39     60     27     80     66     47     41     28
                 vv
clus              CLUS_9
  RC3H2 MUTATED        0
  RC3H2 WILD-TYPE     74
D1410V10, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RC3H2 MUTATED        1      2      0      0
  RC3H2 WILD-TYPE     32     29     27     19
D1410V11, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RC3H2 MUTATED        2      0      0      1
  RC3H2 WILD-TYPE     52     10     24     21
D1410V12, multiclass
        clus
vv       RC3H2 MUTATED RC3H2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1411) Variable = ZFYVE16 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE16 MUTATED        3      1      1      3
  ZFYVE16 WILD-TYPE     43     57     63     40
D1411V1, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE16 MUTATED        3      4      1
  ZFYVE16 WILD-TYPE     48     79     76
D1411V2, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               4                79
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE16 MUTATED       17      2      0      0
  ZFYVE16 WILD-TYPE    161    181    101     20
D1411V3, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1              17               161
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE16 MUTATED        3      1      7
  ZFYVE16 WILD-TYPE     84     79     93
D1411V4, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE16 MUTATED        0      7      8
  ZFYVE16 WILD-TYPE     89    153    130
D1411V5, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               7               153
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFYVE16 MUTATED        8      7      0
  ZFYVE16 WILD-TYPE    174    126     72
D1411V6, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               7               126
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE16 MUTATED        0      4      7      8
  ZFYVE16 WILD-TYPE    112     92     85    178
D1411V7, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               7                85
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFYVE16 MUTATED        1      1      8      0      2      3      4
  ZFYVE16 WILD-TYPE     59     49     41     40     61    122     95
D1411V8, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               8                41
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               3               122
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE16 MUTATED        6      3      0      8
  ZFYVE16 WILD-TYPE    124     75     68    188
D1411V9, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZFYVE16 MUTATED        2      5      1      2      5      0      0      0
  ZFYVE16 WILD-TYPE     38     57     27     78     64     48     43     28
                   vv
clus                CLUS_9
  ZFYVE16 MUTATED        2
  ZFYVE16 WILD-TYPE     72
D1411V10, multiclass
        clus
vv       ZFYVE16 MUTATED ZFYVE16 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE16 MUTATED        0      0      0      1
  ZFYVE16 WILD-TYPE     33     31     27     18
D1411V11, multiclass
[1] "Remove cluster labels:" "ZFYVE16 MUTATED"       
clus
  ZFYVE16 MUTATED ZFYVE16 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-G5-6641 
"ZFYVE16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFYVE16 MUTATED        1      0      0      0
  ZFYVE16 WILD-TYPE     53     10     24     22
D1411V12, multiclass
[1] "Remove cluster labels:" "ZFYVE16 MUTATED"       
clus
  ZFYVE16 MUTATED ZFYVE16 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" "ZFYVE16 WILD-TYPE" 
       TCGA-G5-6641 
"ZFYVE16 WILD-TYPE" 

Clustering(1412) Variable = APOBEC4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        1      0      0      4
  APOBEC4 WILD-TYPE     45     58     64     39
D1412V1, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOBEC4 MUTATED        2      1      2
  APOBEC4 WILD-TYPE     49     82     75
D1412V2, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        8      0      0      0
  APOBEC4 WILD-TYPE    170    183    101     20
D1412V3, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOBEC4 MUTATED        3      0      1
  APOBEC4 WILD-TYPE     84     80     99
D1412V4, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOBEC4 MUTATED        0      5      3
  APOBEC4 WILD-TYPE     89    155    135
D1412V5, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOBEC4 MUTATED        4      3      1
  APOBEC4 WILD-TYPE    178    130     71
D1412V6, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        0      2      2      5
  APOBEC4 WILD-TYPE    112     94     90    181
D1412V7, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APOBEC4 MUTATED        1      0      3      0      1      0      4
  APOBEC4 WILD-TYPE     59     50     46     40     62    125     95
D1412V8, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        2      2      0      5
  APOBEC4 WILD-TYPE    128     76     68    191
D1412V9, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  APOBEC4 MUTATED        1      2      2      0      4      0      0      0
  APOBEC4 WILD-TYPE     39     60     26     80     65     48     43     28
                   vv
clus                CLUS_9
  APOBEC4 MUTATED        0
  APOBEC4 WILD-TYPE     74
D1412V10, multiclass
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        0      0      0      2
  APOBEC4 WILD-TYPE     33     31     27     17
D1412V11, multiclass
[1] "Remove cluster labels:" "APOBEC4 MUTATED"       
clus
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOBEC4 MUTATED        1      0      1      0
  APOBEC4 WILD-TYPE     53     10     23     22
D1412V12, multiclass
[1] "Remove cluster labels:" "APOBEC4 MUTATED"       
clus
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 

Clustering(1413) Variable = ARID5A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5A MUTATED        1      0      0      0
  ARID5A WILD-TYPE     45     58     64     43
D1413V1, multiclass
[1] "Remove cluster labels:" "ARID5A MUTATED"        
clus
  ARID5A MUTATED ARID5A WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID5A MUTATED        0      1      0
  ARID5A WILD-TYPE     51     82     77
D1413V2, multiclass
[1] "Remove cluster labels:" "ARID5A MUTATED"        
clus
  ARID5A MUTATED ARID5A WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ARID5A WILD-TYPE" "ARID5A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5A MUTATED        6      1      1      0
  ARID5A WILD-TYPE    172    182    100     20
D1413V3, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID5A MUTATED        2      1      4
  ARID5A WILD-TYPE     85     79     96
D1413V4, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID5A MUTATED        1      2      4
  ARID5A WILD-TYPE     88    158    134
D1413V5, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID5A MUTATED        6      1      0
  ARID5A WILD-TYPE    176    132     72
D1413V6, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5A MUTATED        1      3      3      1
  ARID5A WILD-TYPE    111     93     89    185
D1413V7, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID5A MUTATED        1      1      5      0      0      1      0
  ARID5A WILD-TYPE     59     49     44     40     63    124     99
D1413V8, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5A MUTATED        5      1      0      2
  ARID5A WILD-TYPE    125     77     68    194
D1413V9, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARID5A MUTATED        0      3      1      1      1      1      1      0
  ARID5A WILD-TYPE     40     59     27     79     68     47     42     28
                  vv
clus               CLUS_9
  ARID5A MUTATED        0
  ARID5A WILD-TYPE     74
D1413V10, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5A MUTATED        0      0      0      3
  ARID5A WILD-TYPE     33     31     27     16
D1413V11, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5A MUTATED        3      0      0      0
  ARID5A WILD-TYPE     51     10     24     22
D1413V12, multiclass
        clus
vv       ARID5A MUTATED ARID5A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1414) Variable = CYP2C18 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C18 MUTATED        0      0      0      2
  CYP2C18 WILD-TYPE     46     58     64     41
D1414V1, multiclass
[1] "Remove cluster labels:" "CYP2C18 MUTATED"       
clus
  CYP2C18 MUTATED CYP2C18 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AY-4071 
"CYP2C18 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP2C18 MUTATED        0      0      2
  CYP2C18 WILD-TYPE     51     83     75
D1414V2, multiclass
[1] "Remove cluster labels:" "CYP2C18 MUTATED"       
clus
  CYP2C18 MUTATED CYP2C18 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" "CYP2C18 WILD-TYPE" 
       TCGA-AY-4071 
"CYP2C18 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C18 MUTATED        4      2      1      0
  CYP2C18 WILD-TYPE    174    181    100     20
D1414V3, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP2C18 MUTATED        2      1      2
  CYP2C18 WILD-TYPE     85     79     98
D1414V4, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP2C18 MUTATED        1      2      2
  CYP2C18 WILD-TYPE     88    158    136
D1414V5, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP2C18 MUTATED        3      2      0
  CYP2C18 WILD-TYPE    179    131     72
D1414V6, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C18 MUTATED        2      2      1      2
  CYP2C18 WILD-TYPE    110     94     91    184
D1414V7, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP2C18 MUTATED        1      1      2      1      1      0      1
  CYP2C18 WILD-TYPE     59     49     47     39     62    125     98
D1414V8, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C18 MUTATED        3      2      0      2
  CYP2C18 WILD-TYPE    127     76     68    194
D1414V9, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP2C18 MUTATED        1      3      1      0      2      0      0      0
  CYP2C18 WILD-TYPE     39     59     27     80     67     48     43     28
                   vv
clus                CLUS_9
  CYP2C18 MUTATED        0
  CYP2C18 WILD-TYPE     74
D1414V10, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C18 MUTATED        1      1      0      1
  CYP2C18 WILD-TYPE     32     30     27     18
D1414V11, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C18 MUTATED        2      0      1      0
  CYP2C18 WILD-TYPE     52     10     23     22
D1414V12, multiclass
        clus
vv       CYP2C18 MUTATED CYP2C18 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1415) Variable = BEND2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND2 MUTATED        7      1      0      1
  BEND2 WILD-TYPE     39     57     64     42
D1415V1, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND2 MUTATED        7      1      1
  BEND2 WILD-TYPE     44     82     76
D1415V2, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND2 MUTATED       14      7      2      0
  BEND2 WILD-TYPE    164    176     99     20
D1415V3, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             7             176
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND2 MUTATED        5      6      4
  BEND2 WILD-TYPE     82     74     96
D1415V4, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             6              74
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND2 MUTATED        3      9      7
  BEND2 WILD-TYPE     86    151    131
D1415V5, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             9             151
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND2 MUTATED        7      8      4
  BEND2 WILD-TYPE    175    125     68
D1415V6, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND2 MUTATED        6      4      4      9
  BEND2 WILD-TYPE    106     92     88    177
D1415V7, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BEND2 MUTATED        3      5      2      1      3      2      7
  BEND2 WILD-TYPE     57     45     47     39     60    123     92
D1415V8, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             5              45
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND2 MUTATED        7      4      2     10
  BEND2 WILD-TYPE    123     74     66    186
D1415V9, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BEND2 MUTATED        1      4      1      6      6      1      2      1
  BEND2 WILD-TYPE     39     58     27     74     63     47     41     27
                 vv
clus              CLUS_9
  BEND2 MUTATED        1
  BEND2 WILD-TYPE     73
D1415V10, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             6              74
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND2 MUTATED        1      0      1      1
  BEND2 WILD-TYPE     32     31     26     18
D1415V11, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND2 MUTATED        2      0      1      0
  BEND2 WILD-TYPE     52     10     23     22
D1415V12, multiclass
        clus
vv       BEND2 MUTATED BEND2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1416) Variable = KCTD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        0      0      0      0
  KCTD9 WILD-TYPE     46     58     64     43
D1416V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        0      0      0
  KCTD9 WILD-TYPE     51     83     77
D1416V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        5      0      0      0
  KCTD9 WILD-TYPE    173    183    101     20
D1416V3, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        3      0      2
  KCTD9 WILD-TYPE     84     80     98
D1416V4, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        0      0      5
  KCTD9 WILD-TYPE     89    160    133
D1416V5, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             0             160
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        5      0      0
  KCTD9 WILD-TYPE    177    133     72
D1416V6, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        0      0      5      0
  KCTD9 WILD-TYPE    112     96     87    186
D1416V7, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             5              87
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCTD9 MUTATED        0      1      4      0      0      0      0
  KCTD9 WILD-TYPE     60     49     45     40     63    125     99
D1416V8, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        3      2      0      0
  KCTD9 WILD-TYPE    127     76     68    196
D1416V9, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCTD9 MUTATED        0      4      0      0      0      0      1      0
  KCTD9 WILD-TYPE     40     58     28     80     69     48     42     28
                 vv
clus              CLUS_9
  KCTD9 MUTATED        0
  KCTD9 WILD-TYPE     74
D1416V10, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        2      0      0      2
  KCTD9 WILD-TYPE     31     31     27     17
D1416V11, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        4      0      0      0
  KCTD9 WILD-TYPE     50     10     24     22
D1416V12, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1417) Variable = SBDS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBDS MUTATED        0      0      0      0
  SBDS WILD-TYPE     46     58     64     43
D1417V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBDS MUTATED        0      0      0
  SBDS WILD-TYPE     51     83     77
D1417V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBDS MUTATED        0      1      2      0
  SBDS WILD-TYPE    178    182     99     20
D1417V3, multiclass
        clus
vv       SBDS MUTATED SBDS WILD-TYPE
  CLUS_1            0            178
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBDS MUTATED        0      3      0
  SBDS WILD-TYPE     87     77    100
D1417V4, multiclass
        clus
vv       SBDS MUTATED SBDS WILD-TYPE
  CLUS_1            0             87
  CLUS_2            3             77
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBDS MUTATED        0      0      2
  SBDS WILD-TYPE     89    160    136
D1417V5, multiclass
[1] "Remove cluster labels:" "SBDS MUTATED"          
clus
  SBDS MUTATED SBDS WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AH-6644     TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AY-6197     TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CK-6746     TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6927 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6928     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G5-6641 
"SBDS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBDS MUTATED        2      0      0
  SBDS WILD-TYPE    180    133     72
D1417V6, multiclass
[1] "Remove cluster labels:" "SBDS MUTATED"          
clus
  SBDS MUTATED SBDS WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AH-6644     TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AY-6197     TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CK-6746     TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6927 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6928     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G5-6641 
"SBDS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBDS MUTATED        2      0      1      0
  SBDS WILD-TYPE    110     96     91    186
D1417V7, multiclass
        clus
vv       SBDS MUTATED SBDS WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             96
  CLUS_3            1             91
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SBDS MUTATED        0      1      0      0      2      0      0
  SBDS WILD-TYPE     60     49     49     40     61    125     99
D1417V8, multiclass
        clus
vv       SBDS MUTATED SBDS WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBDS MUTATED        1      2      0      0
  SBDS WILD-TYPE    129     76     68    196
D1417V9, multiclass
        clus
vv       SBDS MUTATED SBDS WILD-TYPE
  CLUS_1            1            129
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SBDS MUTATED        0      2      1      0      0      0      0      0      0
  SBDS WILD-TYPE     40     60     27     80     69     48     43     28     74
D1417V10, multiclass
        clus
vv       SBDS MUTATED SBDS WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBDS MUTATED        0      1      0      0
  SBDS WILD-TYPE     33     30     27     19
D1417V11, multiclass
[1] "Remove cluster labels:" "SBDS MUTATED"          
clus
  SBDS MUTATED SBDS WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G5-6641 
"SBDS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBDS MUTATED        0      1      0      0
  SBDS WILD-TYPE     54      9     24     22
D1417V12, multiclass
[1] "Remove cluster labels:" "SBDS MUTATED"          
clus
  SBDS MUTATED SBDS WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" "SBDS WILD-TYPE" 
    TCGA-G5-6641 
"SBDS WILD-TYPE" 

Clustering(1418) Variable = KIFC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFC2 MUTATED        0      0      0      0
  KIFC2 WILD-TYPE     46     58     64     43
D1418V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIFC2 MUTATED        0      0      0
  KIFC2 WILD-TYPE     51     83     77
D1418V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFC2 MUTATED        4      2      0      0
  KIFC2 WILD-TYPE    174    181    101     20
D1418V3, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIFC2 MUTATED        2      1      3
  KIFC2 WILD-TYPE     85     79     97
D1418V4, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIFC2 MUTATED        1      2      2
  KIFC2 WILD-TYPE     88    158    136
D1418V5, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIFC2 MUTATED        3      1      1
  KIFC2 WILD-TYPE    179    132     71
D1418V6, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFC2 MUTATED        2      3      1      0
  KIFC2 WILD-TYPE    110     93     91    186
D1418V7, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIFC2 MUTATED        1      1      3      1      0      0      0
  KIFC2 WILD-TYPE     59     49     46     39     63    125     99
D1418V8, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFC2 MUTATED        6      0      0      0
  KIFC2 WILD-TYPE    124     78     68    196
D1418V9, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIFC2 MUTATED        4      1      0      0      1      0      0      0
  KIFC2 WILD-TYPE     36     61     28     80     68     48     43     28
                 vv
clus              CLUS_9
  KIFC2 MUTATED        0
  KIFC2 WILD-TYPE     74
D1418V10, multiclass
        clus
vv       KIFC2 MUTATED KIFC2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFC2 MUTATED        0      0      0      0
  KIFC2 WILD-TYPE     33     31     27     19
D1418V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFC2 MUTATED        0      0      0      0
  KIFC2 WILD-TYPE     54     10     24     22
D1418V12, multiclass

Clustering(1419) Variable = PSMD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        0      0      0      2
  PSMD11 WILD-TYPE     46     58     64     41
D1419V1, multiclass
[1] "Remove cluster labels:" "PSMD11 MUTATED"        
clus
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AY-4071 
"PSMD11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        1      1      0
  PSMD11 WILD-TYPE     50     82     77
D1419V2, multiclass
[1] "Remove cluster labels:" "PSMD11 MUTATED"        
clus
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AY-4071 
"PSMD11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        6      2      0      0
  PSMD11 WILD-TYPE    172    181    101     20
D1419V3, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        2      1      2
  PSMD11 WILD-TYPE     85     79     98
D1419V4, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        0      5      3
  PSMD11 WILD-TYPE     89    155    135
D1419V5, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        4      3      1
  PSMD11 WILD-TYPE    178    130     71
D1419V6, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        2      1      2      3
  PSMD11 WILD-TYPE    110     95     90    183
D1419V7, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMD11 MUTATED        2      2      1      0      0      0      3
  PSMD11 WILD-TYPE     58     48     48     40     63    125     96
D1419V8, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        4      0      1      2
  PSMD11 WILD-TYPE    126     78     67    194
D1419V9, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PSMD11 MUTATED        0      2      1      0      1      1      2      0
  PSMD11 WILD-TYPE     40     60     27     80     68     47     41     28
                  vv
clus               CLUS_9
  PSMD11 MUTATED        0
  PSMD11 WILD-TYPE     74
D1419V10, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        1      0      0      1
  PSMD11 WILD-TYPE     32     31     27     18
D1419V11, multiclass
[1] "Remove cluster labels:" "PSMD11 MUTATED"        
clus
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        1      0      0      1
  PSMD11 WILD-TYPE     53     10     24     21
D1419V12, multiclass
[1] "Remove cluster labels:" "PSMD11 MUTATED"        
clus
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" "PSMD11 WILD-TYPE" 

Clustering(1420) Variable = PPYR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPYR1 MUTATED        1      0      1      1
  PPYR1 WILD-TYPE     45     58     63     42
D1420V1, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPYR1 MUTATED        0      1      2
  PPYR1 WILD-TYPE     51     82     75
D1420V2, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPYR1 MUTATED        5      2      0      0
  PPYR1 WILD-TYPE    173    181    101     20
D1420V3, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPYR1 MUTATED        2      1      1
  PPYR1 WILD-TYPE     85     79     99
D1420V4, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPYR1 MUTATED        0      2      4
  PPYR1 WILD-TYPE     89    158    134
D1420V5, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPYR1 MUTATED        3      3      0
  PPYR1 WILD-TYPE    179    130     72
D1420V6, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPYR1 MUTATED        1      1      2      3
  PPYR1 WILD-TYPE    111     95     90    183
D1420V7, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPYR1 MUTATED        1      1      3      0      0      2      0
  PPYR1 WILD-TYPE     59     49     46     40     63    123     99
D1420V8, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPYR1 MUTATED        2      1      1      3
  PPYR1 WILD-TYPE    128     77     67    193
D1420V9, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPYR1 MUTATED        0      2      0      2      1      0      2      0
  PPYR1 WILD-TYPE     40     60     28     78     68     48     41     28
                 vv
clus              CLUS_9
  PPYR1 MUTATED        0
  PPYR1 WILD-TYPE     74
D1420V10, multiclass
        clus
vv       PPYR1 MUTATED PPYR1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPYR1 MUTATED        1      0      0      0
  PPYR1 WILD-TYPE     32     31     27     19
D1420V11, multiclass
[1] "Remove cluster labels:" "PPYR1 MUTATED"         
clus
  PPYR1 MUTATED PPYR1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-G5-6641 
"PPYR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPYR1 MUTATED        1      0      0      0
  PPYR1 WILD-TYPE     53     10     24     22
D1420V12, multiclass
[1] "Remove cluster labels:" "PPYR1 MUTATED"         
clus
  PPYR1 MUTATED PPYR1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" "PPYR1 WILD-TYPE" 
     TCGA-G5-6641 
"PPYR1 WILD-TYPE" 

Clustering(1421) Variable = MCM4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        1      0      0      3
  MCM4 WILD-TYPE     45     58     64     40
D1421V1, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED        3      1      0
  MCM4 WILD-TYPE     48     82     77
D1421V2, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED       11      0      3      0
  MCM4 WILD-TYPE    167    183     98     20
D1421V3, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            0            183
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED        6      1      3
  MCM4 WILD-TYPE     81     79     97
D1421V4, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED        3      2      5
  MCM4 WILD-TYPE     86    158    133
D1421V5, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED        7      2      1
  MCM4 WILD-TYPE    175    131     71
D1421V6, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        1      4      5      4
  MCM4 WILD-TYPE    111     92     87    182
D1421V7, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MCM4 MUTATED        1      0      3      2      4      0      4
  MCM4 WILD-TYPE     59     50     46     38     59    125     95
D1421V8, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            2             38
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        6      3      1      4
  MCM4 WILD-TYPE    124     75     67    192
D1421V9, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MCM4 MUTATED        2      3      1      1      5      1      1      0      0
  MCM4 WILD-TYPE     38     59     27     79     64     47     42     28     74
D1421V10, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        1      1      1      1
  MCM4 WILD-TYPE     32     30     26     18
D1421V11, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        2      0      2      0
  MCM4 WILD-TYPE     52     10     22     22
D1421V12, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1422) Variable = ARHGEF3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF3 MUTATED        1      0      0      2
  ARHGEF3 WILD-TYPE     45     58     64     41
D1422V1, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF3 MUTATED        2      1      0
  ARHGEF3 WILD-TYPE     49     82     77
D1422V2, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF3 MUTATED        9      1      0      1
  ARHGEF3 WILD-TYPE    169    182    101     19
D1422V3, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF3 MUTATED        4      1      3
  ARHGEF3 WILD-TYPE     83     79     97
D1422V4, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF3 MUTATED        1      1      7
  ARHGEF3 WILD-TYPE     88    159    131
D1422V5, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF3 MUTATED        7      2      0
  ARHGEF3 WILD-TYPE    175    131     72
D1422V6, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF3 MUTATED        1      3      4      3
  ARHGEF3 WILD-TYPE    111     93     88    183
D1422V7, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               4                88
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF3 MUTATED        0      1      5      0      2      0      3
  ARHGEF3 WILD-TYPE     60     49     44     40     61    125     96
D1422V8, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF3 MUTATED        3      3      0      4
  ARHGEF3 WILD-TYPE    127     75     68    192
D1422V9, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGEF3 MUTATED        1      3      1      0      4      0      0      0
  ARHGEF3 WILD-TYPE     39     59     27     80     65     48     43     28
                   vv
clus                CLUS_9
  ARHGEF3 MUTATED        1
  ARHGEF3 WILD-TYPE     73
D1422V10, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF3 MUTATED        1      0      0      2
  ARHGEF3 WILD-TYPE     32     31     27     17
D1422V11, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF3 MUTATED        2      0      1      0
  ARHGEF3 WILD-TYPE     52     10     23     22
D1422V12, multiclass
        clus
vv       ARHGEF3 MUTATED ARHGEF3 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1423) Variable = KLF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        2      0      0      0
  KLF3 WILD-TYPE     44     58     64     43
D1423V1, multiclass
[1] "Remove cluster labels:" "KLF3 MUTATED"          
clus
  KLF3 MUTATED KLF3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3939     TCGA-AA-3941 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AY-4071 
"KLF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED        1      1      0
  KLF3 WILD-TYPE     50     82     77
D1423V2, multiclass
[1] "Remove cluster labels:" "KLF3 MUTATED"          
clus
  KLF3 MUTATED KLF3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3939     TCGA-AA-3941 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" "KLF3 WILD-TYPE" 
    TCGA-AY-4071 
"KLF3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        5      1      1      0
  KLF3 WILD-TYPE    173    182    100     20
D1423V3, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED        1      0      4
  KLF3 WILD-TYPE     86     80     96
D1423V4, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED        0      4      1
  KLF3 WILD-TYPE     89    156    137
D1423V5, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED        0      5      0
  KLF3 WILD-TYPE    182    128     72
D1423V6, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            0            182
  CLUS_2            5            128
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        0      3      2      2
  KLF3 WILD-TYPE    112     93     90    184
D1423V7, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLF3 MUTATED        0      1      4      0      0      1      1
  KLF3 WILD-TYPE     60     49     45     40     63    124     98
D1423V8, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        2      1      0      4
  KLF3 WILD-TYPE    128     77     68    192
D1423V9, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KLF3 MUTATED        1      1      0      0      3      0      0      1      1
  KLF3 WILD-TYPE     39     61     28     80     66     48     43     27     73
D1423V10, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        0      0      0      0
  KLF3 WILD-TYPE     33     31     27     19
D1423V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        0      0      0      0
  KLF3 WILD-TYPE     54     10     24     22
D1423V12, multiclass

Clustering(1424) Variable = SENP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP8 MUTATED        0      0      0      0
  SENP8 WILD-TYPE     46     58     64     43
D1424V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP8 MUTATED        0      0      0
  SENP8 WILD-TYPE     51     83     77
D1424V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP8 MUTATED        4      0      0      0
  SENP8 WILD-TYPE    174    183    101     20
D1424V3, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP8 MUTATED        2      0      2
  SENP8 WILD-TYPE     85     80     98
D1424V4, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP8 MUTATED        0      1      3
  SENP8 WILD-TYPE     89    159    135
D1424V5, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP8 MUTATED        2      2      0
  SENP8 WILD-TYPE    180    131     72
D1424V6, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP8 MUTATED        0      1      3      0
  SENP8 WILD-TYPE    112     95     89    186
D1424V7, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SENP8 MUTATED        0      1      3      0      0      0      0
  SENP8 WILD-TYPE     60     49     46     40     63    125     99
D1424V8, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP8 MUTATED        0      2      0      2
  SENP8 WILD-TYPE    130     76     68    194
D1424V9, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SENP8 MUTATED        0      2      0      1      1      0      0      0
  SENP8 WILD-TYPE     40     60     28     79     68     48     43     28
                 vv
clus              CLUS_9
  SENP8 MUTATED        0
  SENP8 WILD-TYPE     74
D1424V10, multiclass
        clus
vv       SENP8 MUTATED SENP8 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP8 MUTATED        2      0      0      0
  SENP8 WILD-TYPE     31     31     27     19
D1424V11, multiclass
[1] "Remove cluster labels:" "SENP8 MUTATED"         
clus
  SENP8 MUTATED SENP8 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP8 MUTATED        2      0      0      0
  SENP8 WILD-TYPE     52     10     24     22
D1424V12, multiclass
[1] "Remove cluster labels:" "SENP8 MUTATED"         
clus
  SENP8 MUTATED SENP8 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" "SENP8 WILD-TYPE" 

Clustering(1425) Variable = GCM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCM2 MUTATED        1      1      0      2
  GCM2 WILD-TYPE     45     57     64     41
D1425V1, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCM2 MUTATED        0      2      2
  GCM2 WILD-TYPE     51     81     75
D1425V2, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCM2 MUTATED        8      4      1      0
  GCM2 WILD-TYPE    170    179    100     20
D1425V3, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCM2 MUTATED        6      1      2
  GCM2 WILD-TYPE     81     79     98
D1425V4, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCM2 MUTATED        1      8      3
  GCM2 WILD-TYPE     88    152    135
D1425V5, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            8            152
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCM2 MUTATED        4      6      2
  GCM2 WILD-TYPE    178    127     70
D1425V6, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCM2 MUTATED        3      4      3      4
  GCM2 WILD-TYPE    109     92     89    182
D1425V7, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GCM2 MUTATED        3      1      4      2      1      2      1
  GCM2 WILD-TYPE     57     49     45     38     62    123     98
D1425V8, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCM2 MUTATED        5      2      1      6
  GCM2 WILD-TYPE    125     76     67    190
D1425V9, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GCM2 MUTATED        2      1      1      3      3      1      2      0      1
  GCM2 WILD-TYPE     38     61     27     77     66     47     41     28     73
D1425V10, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCM2 MUTATED        2      0      2      2
  GCM2 WILD-TYPE     31     31     25     17
D1425V11, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCM2 MUTATED        2      0      4      0
  GCM2 WILD-TYPE     52     10     20     22
D1425V12, multiclass
        clus
vv       GCM2 MUTATED GCM2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            4             20
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1426) Variable = KRT9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT9 MUTATED        2      1      0      2
  KRT9 WILD-TYPE     44     57     64     41
D1426V1, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT9 MUTATED        2      2      1
  KRT9 WILD-TYPE     49     81     76
D1426V2, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT9 MUTATED       11      2      0      0
  KRT9 WILD-TYPE    167    181    101     20
D1426V3, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT9 MUTATED        6      1      1
  KRT9 WILD-TYPE     81     79     99
D1426V4, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT9 MUTATED        2      2      6
  KRT9 WILD-TYPE     87    158    132
D1426V5, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT9 MUTATED        6      1      3
  KRT9 WILD-TYPE    176    132     69
D1426V6, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT9 MUTATED        1      1      6      5
  KRT9 WILD-TYPE    111     95     86    181
D1426V7, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT9 MUTATED        0      1      4      0      2      2      4
  KRT9 WILD-TYPE     60     49     45     40     61    123     95
D1426V8, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT9 MUTATED        1      4      1      7
  KRT9 WILD-TYPE    129     74     67    189
D1426V9, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KRT9 MUTATED        1      6      2      0      3      0      0      0      1
  KRT9 WILD-TYPE     39     56     26     80     66     48     43     28     73
D1426V10, multiclass
        clus
vv       KRT9 MUTATED KRT9 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT9 MUTATED        0      0      0      1
  KRT9 WILD-TYPE     33     31     27     18
D1426V11, multiclass
[1] "Remove cluster labels:" "KRT9 MUTATED"          
clus
  KRT9 MUTATED KRT9 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-G5-6641 
"KRT9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT9 MUTATED        1      0      0      0
  KRT9 WILD-TYPE     53     10     24     22
D1426V12, multiclass
[1] "Remove cluster labels:" "KRT9 MUTATED"          
clus
  KRT9 MUTATED KRT9 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" "KRT9 WILD-TYPE" 
    TCGA-G5-6641 
"KRT9 WILD-TYPE" 

Clustering(1427) Variable = CHD7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD7 MUTATED        7      1      0      5
  CHD7 WILD-TYPE     39     57     64     38
D1427V1, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            7             39
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD7 MUTATED        6      3      4
  CHD7 WILD-TYPE     45     80     73
D1427V2, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            3             80
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD7 MUTATED       29      5      3      0
  CHD7 WILD-TYPE    149    178     98     20
D1427V3, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1           29            149
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD7 MUTATED       10      5     12
  CHD7 WILD-TYPE     77     75     88
D1427V4, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1           10             77
  CLUS_2            5             75
  CLUS_3           12             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD7 MUTATED        3     15     16
  CHD7 WILD-TYPE     86    145    122
D1427V5, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            3             86
  CLUS_2           15            145
  CLUS_3           16            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD7 MUTATED       12     15      7
  CHD7 WILD-TYPE    170    118     65
D1427V6, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1           12            170
  CLUS_2           15            118
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD7 MUTATED        6     11     10     12
  CHD7 WILD-TYPE    106     85     82    174
D1427V7, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            6            106
  CLUS_2           11             85
  CLUS_3           10             82
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHD7 MUTATED        6      1     14      2      3      2     11
  CHD7 WILD-TYPE     54     49     35     38     60    123     88
D1427V8, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            1             49
  CLUS_3           14             35
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7           11             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD7 MUTATED       13      5      3     16
  CHD7 WILD-TYPE    117     73     65    180
D1427V9, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            5             73
  CLUS_3            3             65
  CLUS_4           16            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CHD7 MUTATED        2      6      3      3     14      3      2      2      2
  CHD7 WILD-TYPE     38     56     25     77     55     45     41     26     72
D1427V10, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            3             25
  CLUS_4            3             77
  CLUS_5           14             55
  CLUS_6            3             45
  CLUS_7            2             41
  CLUS_8            2             26
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD7 MUTATED        3      0      1      4
  CHD7 WILD-TYPE     30     31     26     15
D1427V11, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD7 MUTATED        3      0      4      1
  CHD7 WILD-TYPE     51     10     20     21
D1427V12, multiclass
        clus
vv       CHD7 MUTATED CHD7 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            4             20
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1428) Variable = CHD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        5      0      1      4
  CHD1 WILD-TYPE     41     58     63     39
D1428V1, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD1 MUTATED        8      1      1
  CHD1 WILD-TYPE     43     82     76
D1428V2, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            8             43
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED       18      4      2      0
  CHD1 WILD-TYPE    160    179     99     20
D1428V3, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD1 MUTATED        8      0      7
  CHD1 WILD-TYPE     79     80     93
D1428V4, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            0             80
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD1 MUTATED        5      4     13
  CHD1 WILD-TYPE     84    156    125
D1428V5, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            4            156
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD1 MUTATED       12      6      4
  CHD1 WILD-TYPE    170    127     68
D1428V6, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1           12            170
  CLUS_2            6            127
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        4      5      7      9
  CHD1 WILD-TYPE    108     91     85    177
D1428V7, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            5             91
  CLUS_3            7             85
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHD1 MUTATED        3      4      5      2      3      1      7
  CHD1 WILD-TYPE     57     46     44     38     60    124     92
D1428V8, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3            5             44
  CLUS_4            2             38
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        8      5      1     10
  CHD1 WILD-TYPE    122     73     67    186
D1428V9, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CHD1 MUTATED        1      9      2      0      7      2      0      1      2
  CHD1 WILD-TYPE     39     53     26     80     62     46     43     27     72
D1428V10, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            9             53
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            7             62
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        1      1      0      4
  CHD1 WILD-TYPE     32     30     27     15
D1428V11, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        5      0      0      1
  CHD1 WILD-TYPE     49     10     24     21
D1428V12, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1429) Variable = LRIG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG2 MUTATED        2      0      0      0
  LRIG2 WILD-TYPE     44     58     64     43
D1429V1, multiclass
[1] "Remove cluster labels:" "LRIG2 MUTATED"         
clus
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AY-4071 
"LRIG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG2 MUTATED        2      0      0
  LRIG2 WILD-TYPE     49     83     77
D1429V2, multiclass
[1] "Remove cluster labels:" "LRIG2 MUTATED"         
clus
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AY-4071 
"LRIG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG2 MUTATED        8      0      1      0
  LRIG2 WILD-TYPE    170    183    100     20
D1429V3, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG2 MUTATED        1      0      6
  LRIG2 WILD-TYPE     86     80     94
D1429V4, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG2 MUTATED        1      4      3
  LRIG2 WILD-TYPE     88    156    135
D1429V5, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG2 MUTATED        4      3      1
  LRIG2 WILD-TYPE    178    130     71
D1429V6, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG2 MUTATED        0      4      2      3
  LRIG2 WILD-TYPE    112     92     90    183
D1429V7, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRIG2 MUTATED        0      2      3      1      0      0      3
  LRIG2 WILD-TYPE     60     48     46     39     63    125     96
D1429V8, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG2 MUTATED        6      0      0      3
  LRIG2 WILD-TYPE    124     78     68    193
D1429V9, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRIG2 MUTATED        4      0      0      1      3      0      0      0
  LRIG2 WILD-TYPE     36     62     28     79     66     48     43     28
                 vv
clus              CLUS_9
  LRIG2 MUTATED        1
  LRIG2 WILD-TYPE     73
D1429V10, multiclass
        clus
vv       LRIG2 MUTATED LRIG2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG2 MUTATED        0      0      0      1
  LRIG2 WILD-TYPE     33     31     27     18
D1429V11, multiclass
[1] "Remove cluster labels:" "LRIG2 MUTATED"         
clus
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-G5-6641 
"LRIG2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG2 MUTATED        1      0      0      0
  LRIG2 WILD-TYPE     53     10     24     22
D1429V12, multiclass
[1] "Remove cluster labels:" "LRIG2 MUTATED"         
clus
  LRIG2 MUTATED LRIG2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" "LRIG2 WILD-TYPE" 
     TCGA-G5-6641 
"LRIG2 WILD-TYPE" 

Clustering(1430) Variable = SAMD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9 MUTATED        3      2      0      4
  SAMD9 WILD-TYPE     43     56     64     39
D1430V1, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAMD9 MUTATED        3      4      2
  SAMD9 WILD-TYPE     48     79     75
D1430V2, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             4              79
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9 MUTATED       19      6      2      2
  SAMD9 WILD-TYPE    159    177     99     18
D1430V3, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             6             177
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAMD9 MUTATED        8      2     10
  SAMD9 WILD-TYPE     79     78     90
D1430V4, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAMD9 MUTATED        3     14     10
  SAMD9 WILD-TYPE     86    146    128
D1430V5, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            14             146
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SAMD9 MUTATED       13     10      4
  SAMD9 WILD-TYPE    169    123     68
D1430V6, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1            13             169
  CLUS_2            10             123
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9 MUTATED        0     10      8     11
  SAMD9 WILD-TYPE    112     86     84    175
D1430V7, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             0             112
  CLUS_2            10              86
  CLUS_3             8              84
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAMD9 MUTATED        3      3      9      0      4      3      7
  SAMD9 WILD-TYPE     57     47     40     40     59    122     92
D1430V8, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9 MUTATED        9      6      1     12
  SAMD9 WILD-TYPE    121     72     67    184
D1430V9, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SAMD9 MUTATED        4      7      4      1      8      0      0      2
  SAMD9 WILD-TYPE     36     55     24     79     61     48     43     26
                 vv
clus              CLUS_9
  SAMD9 MUTATED        2
  SAMD9 WILD-TYPE     72
D1430V10, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             7              55
  CLUS_3             4              24
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9 MUTATED        2      1      0      3
  SAMD9 WILD-TYPE     31     30     27     16
D1430V11, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9 MUTATED        5      0      1      0
  SAMD9 WILD-TYPE     49     10     23     22
D1430V12, multiclass
        clus
vv       SAMD9 MUTATED SAMD9 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1431) Variable = CROT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        2      0      0      2
  CROT WILD-TYPE     44     58     64     41
D1431V1, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        2      0      2
  CROT WILD-TYPE     49     83     75
D1431V2, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        6      3      1      0
  CROT WILD-TYPE    172    180    100     20
D1431V3, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            6            172
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        3      1      3
  CROT WILD-TYPE     84     79     97
D1431V4, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        0      2      7
  CROT WILD-TYPE     89    158    131
D1431V5, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        5      4      0
  CROT WILD-TYPE    177    129     72
D1431V6, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            5            177
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        1      3      3      4
  CROT WILD-TYPE    111     93     89    182
D1431V7, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CROT MUTATED        2      2      2      2      0      1      2
  CROT WILD-TYPE     58     48     47     38     63    124     97
D1431V8, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        4      1      1      4
  CROT WILD-TYPE    126     77     67    192
D1431V9, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CROT MUTATED        1      2      0      1      3      0      2      0      1
  CROT WILD-TYPE     39     60     28     79     66     48     41     28     73
D1431V10, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        1      0      0      3
  CROT WILD-TYPE     32     31     27     16
D1431V11, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        3      0      0      1
  CROT WILD-TYPE     51     10     24     21
D1431V12, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1432) Variable = BUB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1 MUTATED        1      0      2      2
  BUB1 WILD-TYPE     45     58     62     41
D1432V1, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BUB1 MUTATED        1      2      2
  BUB1 WILD-TYPE     50     81     75
D1432V2, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1 MUTATED       11      4      1      0
  BUB1 WILD-TYPE    167    179    100     20
D1432V3, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BUB1 MUTATED        2      4      4
  BUB1 WILD-TYPE     85     76     96
D1432V4, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            4             76
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BUB1 MUTATED        4      3      6
  BUB1 WILD-TYPE     85    157    132
D1432V5, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BUB1 MUTATED        5      5      3
  BUB1 WILD-TYPE    177    128     69
D1432V6, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1 MUTATED        3      6      3      4
  BUB1 WILD-TYPE    109     90     89    182
D1432V7, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BUB1 MUTATED        1      3      4      2      1      2      3
  BUB1 WILD-TYPE     59     47     45     38     62    123     96
D1432V8, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1 MUTATED        5      2      0      8
  BUB1 WILD-TYPE    125     76     68    188
D1432V9, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BUB1 MUTATED        3      2      2      3      2      0      0      1      2
  BUB1 WILD-TYPE     37     60     26     77     67     48     43     27     72
D1432V10, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1 MUTATED        0      2      0      1
  BUB1 WILD-TYPE     33     29     27     18
D1432V11, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1 MUTATED        1      1      1      0
  BUB1 WILD-TYPE     53      9     23     22
D1432V12, multiclass
        clus
vv       BUB1 MUTATED BUB1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1433) Variable = SULT1E1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1E1 MUTATED        1      0      0      1
  SULT1E1 WILD-TYPE     45     58     64     42
D1433V1, multiclass
[1] "Remove cluster labels:" "SULT1E1 MUTATED"       
clus
  SULT1E1 MUTATED SULT1E1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AY-4071 
"SULT1E1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1E1 MUTATED        1      0      1
  SULT1E1 WILD-TYPE     50     83     76
D1433V2, multiclass
[1] "Remove cluster labels:" "SULT1E1 MUTATED"       
clus
  SULT1E1 MUTATED SULT1E1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" "SULT1E1 WILD-TYPE" 
       TCGA-AY-4071 
"SULT1E1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1E1 MUTATED        5      0      0      0
  SULT1E1 WILD-TYPE    173    183    101     20
D1433V3, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1E1 MUTATED        3      0      0
  SULT1E1 WILD-TYPE     84     80    100
D1433V4, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               0               100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1E1 MUTATED        0      2      2
  SULT1E1 WILD-TYPE     89    158    136
D1433V5, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1E1 MUTATED        2      2      0
  SULT1E1 WILD-TYPE    180    131     72
D1433V6, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1E1 MUTATED        0      0      2      3
  SULT1E1 WILD-TYPE    112     96     90    183
D1433V7, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               0                96
  CLUS_3               2                90
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SULT1E1 MUTATED        1      0      1      0      1      0      2
  SULT1E1 WILD-TYPE     59     50     48     40     62    125     97
D1433V8, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1E1 MUTATED        1      1      0      3
  SULT1E1 WILD-TYPE    129     77     68    193
D1433V9, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SULT1E1 MUTATED        0      2      0      0      2      0      0      0
  SULT1E1 WILD-TYPE     40     60     28     80     67     48     43     28
                   vv
clus                CLUS_9
  SULT1E1 MUTATED        1
  SULT1E1 WILD-TYPE     73
D1433V10, multiclass
        clus
vv       SULT1E1 MUTATED SULT1E1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1E1 MUTATED        0      0      0      0
  SULT1E1 WILD-TYPE     33     31     27     19
D1433V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1E1 MUTATED        0      0      0      0
  SULT1E1 WILD-TYPE     54     10     24     22
D1433V12, multiclass

Clustering(1434) Variable = TTBK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTBK2 MUTATED        3      0      0      2
  TTBK2 WILD-TYPE     43     58     64     41
D1434V1, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTBK2 MUTATED        2      2      1
  TTBK2 WILD-TYPE     49     81     76
D1434V2, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTBK2 MUTATED       15      1      2      0
  TTBK2 WILD-TYPE    163    182     99     20
D1434V3, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTBK2 MUTATED        6      1      6
  TTBK2 WILD-TYPE     81     79     94
D1434V4, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTBK2 MUTATED        1      6      6
  TTBK2 WILD-TYPE     88    154    132
D1434V5, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTBK2 MUTATED        6      6      1
  TTBK2 WILD-TYPE    176    127     71
D1434V6, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTBK2 MUTATED        2      7      4      5
  TTBK2 WILD-TYPE    110     89     88    181
D1434V7, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTBK2 MUTATED        2      3      6      2      1      1      3
  TTBK2 WILD-TYPE     58     47     43     38     62    124     96
D1434V8, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTBK2 MUTATED        8      2      2      6
  TTBK2 WILD-TYPE    122     76     66    190
D1434V9, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TTBK2 MUTATED        2      3      1      3      5      0      3      0
  TTBK2 WILD-TYPE     38     59     27     77     64     48     40     28
                 vv
clus              CLUS_9
  TTBK2 MUTATED        1
  TTBK2 WILD-TYPE     73
D1434V10, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTBK2 MUTATED        1      0      1      3
  TTBK2 WILD-TYPE     32     31     26     16
D1434V11, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTBK2 MUTATED        2      0      3      0
  TTBK2 WILD-TYPE     52     10     21     22
D1434V12, multiclass
        clus
vv       TTBK2 MUTATED TTBK2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1435) Variable = SMO MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMO MUTATED        0      0      0      0
  SMO WILD-TYPE     46     58     64     43
D1435V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SMO MUTATED        0      0      0
  SMO WILD-TYPE     51     83     77
D1435V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMO MUTATED        7      3      2      1
  SMO WILD-TYPE    171    180     99     19
D1435V3, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           7           171
  CLUS_2           3           180
  CLUS_3           2            99
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SMO MUTATED        5      1      7
  SMO WILD-TYPE     82     79     93
D1435V4, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           5            82
  CLUS_2           1            79
  CLUS_3           7            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SMO MUTATED        0      5      5
  SMO WILD-TYPE     89    155    133
D1435V5, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           0            89
  CLUS_2           5           155
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SMO MUTATED        5      4      1
  SMO WILD-TYPE    177    129     71
D1435V6, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           5           177
  CLUS_2           4           129
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMO MUTATED        3      7      3      0
  SMO WILD-TYPE    109     89     89    186
D1435V7, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           3           109
  CLUS_2           7            89
  CLUS_3           3            89
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMO MUTATED        2      3      2      0      4      0      2
  SMO WILD-TYPE     58     47     47     40     59    125     97
D1435V8, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           2            58
  CLUS_2           3            47
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           4            59
  CLUS_6           0           125
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMO MUTATED        6      3      2      2
  SMO WILD-TYPE    124     75     66    194
D1435V9, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           6           124
  CLUS_2           3            75
  CLUS_3           2            66
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMO MUTATED        0      1      1      3      4      1      3      0      0
  SMO WILD-TYPE     40     61     27     77     65     47     40     28     74
D1435V10, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           0            40
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           3            77
  CLUS_5           4            65
  CLUS_6           1            47
  CLUS_7           3            40
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMO MUTATED        0      2      2      2
  SMO WILD-TYPE     33     29     25     17
D1435V11, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           0            33
  CLUS_2           2            29
  CLUS_3           2            25
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMO MUTATED        1      0      2      3
  SMO WILD-TYPE     53     10     22     19
D1435V12, multiclass
        clus
vv       SMO MUTATED SMO WILD-TYPE
  CLUS_1           1            53
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           3            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1436) Variable = FBXO40 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO40 MUTATED        3      0      1      2
  FBXO40 WILD-TYPE     43     58     63     41
D1436V1, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO40 MUTATED        3      2      1
  FBXO40 WILD-TYPE     48     81     76
D1436V2, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO40 MUTATED       14      6      1      0
  FBXO40 WILD-TYPE    164    177    100     20
D1436V3, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              6              177
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO40 MUTATED        7      2      6
  FBXO40 WILD-TYPE     80     78     94
D1436V4, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO40 MUTATED        1      5     11
  FBXO40 WILD-TYPE     88    155    127
D1436V5, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO40 MUTATED       12      4      1
  FBXO40 WILD-TYPE    170    129     71
D1436V6, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO40 MUTATED        4      5      6      6
  FBXO40 WILD-TYPE    108     91     86    180
D1436V7, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              5               91
  CLUS_3              6               86
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXO40 MUTATED        2      0      8      3      3      1      4
  FBXO40 WILD-TYPE     58     50     41     37     60    124     95
D1436V8, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              3               37
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO40 MUTATED        9      3      3      5
  FBXO40 WILD-TYPE    121     75     65    191
D1436V9, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              3               75
  CLUS_3              3               65
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXO40 MUTATED        2      4      2      3      6      0      2      0
  FBXO40 WILD-TYPE     38     58     26     77     63     48     41     28
                  vv
clus               CLUS_9
  FBXO40 MUTATED        1
  FBXO40 WILD-TYPE     73
D1436V10, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO40 MUTATED        1      0      0      3
  FBXO40 WILD-TYPE     32     31     27     16
D1436V11, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO40 MUTATED        2      0      1      1
  FBXO40 WILD-TYPE     52     10     23     21
D1436V12, multiclass
        clus
vv       FBXO40 MUTATED FBXO40 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1437) Variable = ARHGAP29 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        2      1      0      3
  ARHGAP29 WILD-TYPE     44     57     64     40
D1437V1, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        3      2      1
  ARHGAP29 WILD-TYPE     48     81     76
D1437V2, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                2                 81
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED       14      3      1      1
  ARHGAP29 WILD-TYPE    164    180    100     19
D1437V3, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                3                180
  CLUS_3                1                100
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        3      2      8
  ARHGAP29 WILD-TYPE     84     78     92
D1437V4, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                2                 78
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        1      8      6
  ARHGAP29 WILD-TYPE     88    152    132
D1437V5, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                8                152
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        4      6      5
  ARHGAP29 WILD-TYPE    178    127     67
D1437V6, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                6                127
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        2      9      2      6
  ARHGAP29 WILD-TYPE    110     87     90    180
D1437V7, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                9                 87
  CLUS_3                2                 90
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP29 MUTATED        1      3      6      3      1      1      4
  ARHGAP29 WILD-TYPE     59     47     43     37     62    124     95
D1437V8, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                3                 47
  CLUS_3                6                 43
  CLUS_4                3                 37
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        8      2      2      7
  ARHGAP29 WILD-TYPE    122     76     66    189
D1437V9, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                8                122
  CLUS_2                2                 76
  CLUS_3                2                 66
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP29 MUTATED        2      1      2      1      6      0      5      2
  ARHGAP29 WILD-TYPE     38     61     26     79     63     48     38     26
                    vv
clus                 CLUS_9
  ARHGAP29 MUTATED        0
  ARHGAP29 WILD-TYPE     74
D1437V10, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                1                 61
  CLUS_3                2                 26
  CLUS_4                1                 79
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                5                 38
  CLUS_8                2                 26
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        2      1      0      1
  ARHGAP29 WILD-TYPE     31     30     27     18
D1437V11, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        2      0      1      1
  ARHGAP29 WILD-TYPE     52     10     23     21
D1437V12, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1438) Variable = PAK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK2 MUTATED        1      0      0      1
  PAK2 WILD-TYPE     45     58     64     42
D1438V1, multiclass
[1] "Remove cluster labels:" "PAK2 MUTATED"          
clus
  PAK2 MUTATED PAK2 WILD-TYPE 
             2            209 
    TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AY-4071 
"PAK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK2 MUTATED        1      0      1
  PAK2 WILD-TYPE     50     83     76
D1438V2, multiclass
[1] "Remove cluster labels:" "PAK2 MUTATED"          
clus
  PAK2 MUTATED PAK2 WILD-TYPE 
             2            209 
    TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AY-4071 
"PAK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK2 MUTATED        8      2      1      0
  PAK2 WILD-TYPE    170    181    100     20
D1438V3, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK2 MUTATED        3      1      5
  PAK2 WILD-TYPE     84     79     95
D1438V4, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK2 MUTATED        1      4      5
  PAK2 WILD-TYPE     88    156    133
D1438V5, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK2 MUTATED        6      3      1
  PAK2 WILD-TYPE    176    130     71
D1438V6, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK2 MUTATED        1      4      3      3
  PAK2 WILD-TYPE    111     92     89    183
D1438V7, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK2 MUTATED        2      1      4      1      1      1      1
  PAK2 WILD-TYPE     58     49     45     39     62    124     98
D1438V8, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK2 MUTATED        5      2      0      4
  PAK2 WILD-TYPE    125     76     68    192
D1438V9, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAK2 MUTATED        0      2      1      2      5      0      1      0      0
  PAK2 WILD-TYPE     40     60     27     78     64     48     42     28     74
D1438V10, multiclass
        clus
vv       PAK2 MUTATED PAK2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK2 MUTATED        1      0      0      1
  PAK2 WILD-TYPE     32     31     27     18
D1438V11, multiclass
[1] "Remove cluster labels:" "PAK2 MUTATED"          
clus
  PAK2 MUTATED PAK2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK2 MUTATED        2      0      0      0
  PAK2 WILD-TYPE     52     10     24     22
D1438V12, multiclass
[1] "Remove cluster labels:" "PAK2 MUTATED"          
clus
  PAK2 MUTATED PAK2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" "PAK2 WILD-TYPE" 

Clustering(1439) Variable = MAOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOA MUTATED        1      1      0      1
  MAOA WILD-TYPE     45     57     64     42
D1439V1, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOA MUTATED        2      1      0
  MAOA WILD-TYPE     49     82     77
D1439V2, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOA MUTATED        3      2      2      0
  MAOA WILD-TYPE    175    181     99     20
D1439V3, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOA MUTATED        1      2      1
  MAOA WILD-TYPE     86     78     99
D1439V4, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOA MUTATED        1      2      4
  MAOA WILD-TYPE     88    158    134
D1439V5, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOA MUTATED        5      0      2
  MAOA WILD-TYPE    177    133     70
D1439V6, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            5            177
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOA MUTATED        2      1      2      2
  MAOA WILD-TYPE    110     95     90    184
D1439V7, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAOA MUTATED        2      0      1      0      1      1      2
  MAOA WILD-TYPE     58     50     48     40     62    124     97
D1439V8, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOA MUTATED        1      2      1      2
  MAOA WILD-TYPE    129     76     67    194
D1439V9, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            1            129
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MAOA MUTATED        0      2      1      0      1      0      1      0      1
  MAOA WILD-TYPE     40     60     27     80     68     48     42     28     73
D1439V10, multiclass
        clus
vv       MAOA MUTATED MAOA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOA MUTATED        0      1      0      1
  MAOA WILD-TYPE     33     30     27     18
D1439V11, multiclass
[1] "Remove cluster labels:" "MAOA MUTATED"          
clus
  MAOA MUTATED MAOA WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOA MUTATED        1      1      0      0
  MAOA WILD-TYPE     53      9     24     22
D1439V12, multiclass
[1] "Remove cluster labels:" "MAOA MUTATED"          
clus
  MAOA MUTATED MAOA WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" "MAOA WILD-TYPE" 

Clustering(1440) Variable = FAM120C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120C MUTATED        1      0      0      1
  FAM120C WILD-TYPE     45     58     64     42
D1440V1, multiclass
[1] "Remove cluster labels:" "FAM120C MUTATED"       
clus
  FAM120C MUTATED FAM120C WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AY-4071 
"FAM120C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120C MUTATED        1      1      0
  FAM120C WILD-TYPE     50     82     77
D1440V2, multiclass
[1] "Remove cluster labels:" "FAM120C MUTATED"       
clus
  FAM120C MUTATED FAM120C WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AY-4071 
"FAM120C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120C MUTATED        6      2      0      0
  FAM120C WILD-TYPE    172    181    101     20
D1440V3, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120C MUTATED        2      1      3
  FAM120C WILD-TYPE     85     79     97
D1440V4, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120C MUTATED        1      4      1
  FAM120C WILD-TYPE     88    156    137
D1440V5, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM120C MUTATED        1      2      3
  FAM120C WILD-TYPE    181    131     69
D1440V6, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               1               181
  CLUS_2               2               131
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120C MUTATED        3      3      0      2
  FAM120C WILD-TYPE    109     93     92    184
D1440V7, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               3               109
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM120C MUTATED        1      1      1      1      2      1      1
  FAM120C WILD-TYPE     59     49     48     39     61    124     98
D1440V8, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120C MUTATED        5      1      0      2
  FAM120C WILD-TYPE    125     77     68    194
D1440V9, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               5               125
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM120C MUTATED        1      0      0      3      2      2      0      0
  FAM120C WILD-TYPE     39     62     28     77     67     46     43     28
                   vv
clus                CLUS_9
  FAM120C MUTATED        0
  FAM120C WILD-TYPE     74
D1440V10, multiclass
        clus
vv       FAM120C MUTATED FAM120C WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               3                77
  CLUS_5               2                67
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120C MUTATED        0      1      0      1
  FAM120C WILD-TYPE     33     30     27     18
D1440V11, multiclass
[1] "Remove cluster labels:" "FAM120C MUTATED"       
clus
  FAM120C MUTATED FAM120C WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6569 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM120C MUTATED        0      0      1      1
  FAM120C WILD-TYPE     54     10     23     21
D1440V12, multiclass
[1] "Remove cluster labels:" "FAM120C MUTATED"       
clus
  FAM120C MUTATED FAM120C WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6569 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" "FAM120C WILD-TYPE" 

Clustering(1441) Variable = MED13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED13 MUTATED        2      0      0      4
  MED13 WILD-TYPE     44     58     64     39
D1441V1, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED13 MUTATED        4      1      1
  MED13 WILD-TYPE     47     82     76
D1441V2, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED13 MUTATED       18      4      0      0
  MED13 WILD-TYPE    160    179    101     20
D1441V3, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED13 MUTATED        5      3      8
  MED13 WILD-TYPE     82     77     92
D1441V4, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED13 MUTATED        3      7      9
  MED13 WILD-TYPE     86    153    129
D1441V5, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED13 MUTATED        9      7      3
  MED13 WILD-TYPE    173    126     69
D1441V6, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             7             126
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED13 MUTATED        1      7      7      7
  MED13 WILD-TYPE    111     89     85    179
D1441V7, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             7              85
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED13 MUTATED        2      2      9      0      1      1      7
  MED13 WILD-TYPE     58     48     40     40     62    124     92
D1441V8, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED13 MUTATED        4      5      1     11
  MED13 WILD-TYPE    126     73     67    185
D1441V9, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MED13 MUTATED        0      5      1      0     10      0      2      2
  MED13 WILD-TYPE     40     57     27     80     59     48     41     26
                 vv
clus              CLUS_9
  MED13 MUTATED        1
  MED13 WILD-TYPE     73
D1441V10, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED13 MUTATED        1      0      0      2
  MED13 WILD-TYPE     32     31     27     17
D1441V11, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED13 MUTATED        2      0      1      0
  MED13 WILD-TYPE     52     10     23     22
D1441V12, multiclass
        clus
vv       MED13 MUTATED MED13 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1442) Variable = ALCAM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALCAM MUTATED        1      0      0      1
  ALCAM WILD-TYPE     45     58     64     42
D1442V1, multiclass
[1] "Remove cluster labels:" "ALCAM MUTATED"         
clus
  ALCAM MUTATED ALCAM WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866      TCGA-AA-3867 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AY-4071 
"ALCAM WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALCAM MUTATED        2      0      0
  ALCAM WILD-TYPE     49     83     77
D1442V2, multiclass
[1] "Remove cluster labels:" "ALCAM MUTATED"         
clus
  ALCAM MUTATED ALCAM WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866      TCGA-AA-3867 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" "ALCAM WILD-TYPE" 
     TCGA-AY-4071 
"ALCAM WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALCAM MUTATED        7      4      1      0
  ALCAM WILD-TYPE    171    179    100     20
D1442V3, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALCAM MUTATED        2      3      5
  ALCAM WILD-TYPE     85     77     95
D1442V4, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALCAM MUTATED        1      6      4
  ALCAM WILD-TYPE     88    154    134
D1442V5, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALCAM MUTATED        5      5      1
  ALCAM WILD-TYPE    177    128     71
D1442V6, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALCAM MUTATED        2      3      5      2
  ALCAM WILD-TYPE    110     93     87    184
D1442V7, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALCAM MUTATED        1      1      3      1      4      0      2
  ALCAM WILD-TYPE     59     49     46     39     59    125     97
D1442V8, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALCAM MUTATED        6      4      0      2
  ALCAM WILD-TYPE    124     74     68    194
D1442V9, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALCAM MUTATED        2      4      0      2      2      1      0      1
  ALCAM WILD-TYPE     38     58     28     78     67     47     43     27
                 vv
clus              CLUS_9
  ALCAM MUTATED        0
  ALCAM WILD-TYPE     74
D1442V10, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALCAM MUTATED        0      1      1      3
  ALCAM WILD-TYPE     33     30     26     16
D1442V11, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALCAM MUTATED        1      1      2      1
  ALCAM WILD-TYPE     53      9     22     21
D1442V12, multiclass
        clus
vv       ALCAM MUTATED ALCAM WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1443) Variable = MEGF8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        4      0      0      3
  MEGF8 WILD-TYPE     42     58     64     40
D1443V1, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEGF8 MUTATED        5      1      1
  MEGF8 WILD-TYPE     46     82     76
D1443V2, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED       26      0      0      0
  MEGF8 WILD-TYPE    152    183    101     20
D1443V3, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1            26             152
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEGF8 MUTATED        4      0     15
  MEGF8 WILD-TYPE     83     80     85
D1443V4, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEGF8 MUTATED        2      9     13
  MEGF8 WILD-TYPE     87    151    125
D1443V5, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3            13             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEGF8 MUTATED       13      9      2
  MEGF8 WILD-TYPE    169    124     70
D1443V6, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1            13             169
  CLUS_2             9             124
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        0     12      7      8
  MEGF8 WILD-TYPE    112     84     85    178
D1443V7, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             0             112
  CLUS_2            12              84
  CLUS_3             7              85
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEGF8 MUTATED        2      1     15      0      1      0      8
  MEGF8 WILD-TYPE     58     49     34     40     62    125     91
D1443V8, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3            15              34
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED       12      2      2     11
  MEGF8 WILD-TYPE    118     76     66    185
D1443V9, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MEGF8 MUTATED        2      6      2      1     15      0      0      1
  MEGF8 WILD-TYPE     38     56     26     79     54     48     43     27
                 vv
clus              CLUS_9
  MEGF8 MUTATED        0
  MEGF8 WILD-TYPE     74
D1443V10, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5            15              54
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        1      0      1      3
  MEGF8 WILD-TYPE     32     31     26     16
D1443V11, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        2      0      3      0
  MEGF8 WILD-TYPE     52     10     21     22
D1443V12, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1444) Variable = SLIT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLIT3 MUTATED        3      1      2      3
  SLIT3 WILD-TYPE     43     57     62     40
D1444V1, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SLIT3 MUTATED        4      2      3
  SLIT3 WILD-TYPE     47     81     74
D1444V2, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLIT3 MUTATED       22      5      0      0
  SLIT3 WILD-TYPE    156    178    101     20
D1444V3, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SLIT3 MUTATED        5      2     11
  SLIT3 WILD-TYPE     82     78     89
D1444V4, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SLIT3 MUTATED        3     11     10
  SLIT3 WILD-TYPE     86    149    128
D1444V5, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            11             149
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SLIT3 MUTATED       12      8      4
  SLIT3 WILD-TYPE    170    125     68
D1444V6, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1            12             170
  CLUS_2             8             125
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLIT3 MUTATED        4     10      5      8
  SLIT3 WILD-TYPE    108     86     87    178
D1444V7, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             4             108
  CLUS_2            10              86
  CLUS_3             5              87
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLIT3 MUTATED        2      5      9      1      2      4      4
  SLIT3 WILD-TYPE     58     45     40     39     61    121     95
D1444V8, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             5              45
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             4             121
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLIT3 MUTATED       12      3      1     10
  SLIT3 WILD-TYPE    118     75     67    186
D1444V9, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLIT3 MUTATED        3      4      1      3      9      1      3      2
  SLIT3 WILD-TYPE     37     58     27     77     60     47     40     26
                 vv
clus              CLUS_9
  SLIT3 MUTATED        0
  SLIT3 WILD-TYPE     74
D1444V10, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             9              60
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLIT3 MUTATED        1      1      1      2
  SLIT3 WILD-TYPE     32     30     26     17
D1444V11, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLIT3 MUTATED        3      0      2      0
  SLIT3 WILD-TYPE     51     10     22     22
D1444V12, multiclass
        clus
vv       SLIT3 MUTATED SLIT3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1445) Variable = KIF14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF14 MUTATED        2      0      0      4
  KIF14 WILD-TYPE     44     58     64     39
D1445V1, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF14 MUTATED        3      1      2
  KIF14 WILD-TYPE     48     82     75
D1445V2, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF14 MUTATED        9      1      2      1
  KIF14 WILD-TYPE    169    182     99     19
D1445V3, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF14 MUTATED        4      0      3
  KIF14 WILD-TYPE     83     80     97
D1445V4, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF14 MUTATED        2      4      3
  KIF14 WILD-TYPE     87    156    135
D1445V5, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF14 MUTATED        4      3      2
  KIF14 WILD-TYPE    178    130     70
D1445V6, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF14 MUTATED        0      2      4      7
  KIF14 WILD-TYPE    112     94     88    179
D1445V7, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF14 MUTATED        3      1      1      0      2      0      6
  KIF14 WILD-TYPE     57     49     48     40     61    125     93
D1445V8, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF14 MUTATED        3      3      0      6
  KIF14 WILD-TYPE    127     75     68    190
D1445V9, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF14 MUTATED        3      1      3      1      3      0      0      0
  KIF14 WILD-TYPE     37     61     25     79     66     48     43     28
                 vv
clus              CLUS_9
  KIF14 MUTATED        1
  KIF14 WILD-TYPE     73
D1445V10, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF14 MUTATED        1      1      0      1
  KIF14 WILD-TYPE     32     30     27     18
D1445V11, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF14 MUTATED        2      0      1      0
  KIF14 WILD-TYPE     52     10     23     22
D1445V12, multiclass
        clus
vv       KIF14 MUTATED KIF14 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1446) Variable = CDKL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL2 MUTATED        1      0      0      3
  CDKL2 WILD-TYPE     45     58     64     40
D1446V1, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL2 MUTATED        2      2      0
  CDKL2 WILD-TYPE     49     81     77
D1446V2, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL2 MUTATED        9      2      0      0
  CDKL2 WILD-TYPE    169    181    101     20
D1446V3, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL2 MUTATED        4      0      3
  CDKL2 WILD-TYPE     83     80     97
D1446V4, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL2 MUTATED        1      4      2
  CDKL2 WILD-TYPE     88    156    136
D1446V5, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL2 MUTATED        3      3      1
  CDKL2 WILD-TYPE    179    130     71
D1446V6, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL2 MUTATED        1      4      2      4
  CDKL2 WILD-TYPE    111     92     90    182
D1446V7, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKL2 MUTATED        1      2      2      0      2      1      3
  CDKL2 WILD-TYPE     59     48     47     40     61    124     96
D1446V8, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL2 MUTATED        5      2      0      4
  CDKL2 WILD-TYPE    125     76     68    192
D1446V9, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDKL2 MUTATED        0      2      3      1      3      1      1      0
  CDKL2 WILD-TYPE     40     60     25     79     66     47     42     28
                 vv
clus              CLUS_9
  CDKL2 MUTATED        0
  CDKL2 WILD-TYPE     74
D1446V10, multiclass
        clus
vv       CDKL2 MUTATED CDKL2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL2 MUTATED        0      1      0      0
  CDKL2 WILD-TYPE     33     30     27     19
D1446V11, multiclass
[1] "Remove cluster labels:" "CDKL2 MUTATED"         
clus
  CDKL2 MUTATED CDKL2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6674      TCGA-CM-6676 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-G5-6641 
"CDKL2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL2 MUTATED        1      0      0      0
  CDKL2 WILD-TYPE     53     10     24     22
D1446V12, multiclass
[1] "Remove cluster labels:" "CDKL2 MUTATED"         
clus
  CDKL2 MUTATED CDKL2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6674      TCGA-CM-6676 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" "CDKL2 WILD-TYPE" 
     TCGA-G5-6641 
"CDKL2 WILD-TYPE" 

Clustering(1447) Variable = ITGA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA5 MUTATED        4      1      0      1
  ITGA5 WILD-TYPE     42     57     64     42
D1447V1, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA5 MUTATED        4      2      0
  ITGA5 WILD-TYPE     47     81     77
D1447V2, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA5 MUTATED       12      2      3      0
  ITGA5 WILD-TYPE    166    181     98     20
D1447V3, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA5 MUTATED        4      2      5
  ITGA5 WILD-TYPE     83     78     95
D1447V4, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA5 MUTATED        1      8      7
  ITGA5 WILD-TYPE     88    152    131
D1447V5, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA5 MUTATED        8      7      1
  ITGA5 WILD-TYPE    174    126     71
D1447V6, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA5 MUTATED        4      6      3      4
  ITGA5 WILD-TYPE    108     90     89    182
D1447V7, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGA5 MUTATED        1      4      4      1      0      1      6
  ITGA5 WILD-TYPE     59     46     45     39     63    124     93
D1447V8, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA5 MUTATED        6      2      1      6
  ITGA5 WILD-TYPE    124     76     67    190
D1447V9, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITGA5 MUTATED        1      3      2      0      1      3      2      2
  ITGA5 WILD-TYPE     39     59     26     80     68     45     41     26
                 vv
clus              CLUS_9
  ITGA5 MUTATED        1
  ITGA5 WILD-TYPE     73
D1447V10, multiclass
        clus
vv       ITGA5 MUTATED ITGA5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             3              45
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA5 MUTATED        2      0      0      0
  ITGA5 WILD-TYPE     31     31     27     19
D1447V11, multiclass
[1] "Remove cluster labels:" "ITGA5 MUTATED"         
clus
  ITGA5 MUTATED ITGA5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5869      TCGA-DC-6157 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA5 MUTATED        0      0      0      2
  ITGA5 WILD-TYPE     54     10     24     20
D1447V12, multiclass
[1] "Remove cluster labels:" "ITGA5 MUTATED"         
clus
  ITGA5 MUTATED ITGA5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5869      TCGA-DC-6157 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" "ITGA5 WILD-TYPE" 

Clustering(1448) Variable = SULT1C4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C4 MUTATED        0      0      0      3
  SULT1C4 WILD-TYPE     46     58     64     40
D1448V1, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C4 MUTATED        3      0      0
  SULT1C4 WILD-TYPE     48     83     77
D1448V2, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C4 MUTATED        3      0      0      0
  SULT1C4 WILD-TYPE    175    183    101     20
D1448V3, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C4 MUTATED        0      0      0
  SULT1C4 WILD-TYPE     87     80    100
D1448V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C4 MUTATED        0      1      1
  SULT1C4 WILD-TYPE     89    159    137
D1448V5, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3489        TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3510        TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3525        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3558        TCGA-AA-3560 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655        TCGA-AA-3664 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681        TCGA-AA-3688 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697        TCGA-AA-3710 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848        TCGA-AA-3850 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856        TCGA-AA-3861 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3955 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-6899        TCGA-AD-6965        TCGA-AF-2689        TCGA-AF-3400 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3578        TCGA-AG-3580 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609        TCGA-AG-3612 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3742        TCGA-AG-3878 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3885        TCGA-AG-3893 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-6004 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4682 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6621 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918        TCGA-CM-4743 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-DC-5337 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D4 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G5-6641 
"SULT1C4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C4 MUTATED        2      0      0
  SULT1C4 WILD-TYPE    180    133     72
D1448V6, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3489        TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3510        TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3525        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3558        TCGA-AA-3560 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655        TCGA-AA-3664 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681        TCGA-AA-3688 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697        TCGA-AA-3710 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848        TCGA-AA-3850 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856        TCGA-AA-3861 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3955 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-6899        TCGA-AD-6965        TCGA-AF-2689        TCGA-AF-3400 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3578        TCGA-AG-3580 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609        TCGA-AG-3612 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3742        TCGA-AG-3878 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3885        TCGA-AG-3893 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-6004 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4682 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6621 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918        TCGA-CM-4743 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-DC-5337 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D4 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G5-6641 
"SULT1C4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C4 MUTATED        1      0      0      2
  SULT1C4 WILD-TYPE    111     96     92    184
D1448V7, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               0                96
  CLUS_3               0                92
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SULT1C4 MUTATED        0      1      0      0      0      0      2
  SULT1C4 WILD-TYPE     60     49     49     40     63    125     97
D1448V8, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C4 MUTATED        0      0      0      2
  SULT1C4 WILD-TYPE    130     78     68    194
D1448V9, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               470 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-4105 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659        TCGA-A6-5660 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664        TCGA-A6-5665 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649        TCGA-A6-6651 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654        TCGA-A6-6780 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3492 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510        TCGA-AA-3511 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517        TCGA-AA-3518 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3527        TCGA-AA-3529 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3538        TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3548        TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3554        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655        TCGA-AA-3660 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3662        TCGA-AA-3663        TCGA-AA-3664        TCGA-AA-3666 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697        TCGA-AA-3710 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00L        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A010        TCGA-AA-A01D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01P        TCGA-AA-A01R 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Z        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-2693 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-4110        TCGA-AF-5654 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3731 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-3878        TCGA-AG-3881 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A011        TCGA-AG-A015 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AU-3779        TCGA-AU-6004        TCGA-AY-4070        TCGA-AY-4071 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4681 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407        TCGA-AZ-6598 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SULT1C4 MUTATED        0      0      0      0      2      0      0      0
  SULT1C4 WILD-TYPE     40     62     28     80     67     48     43     28
                   vv
clus                CLUS_9
  SULT1C4 MUTATED        0
  SULT1C4 WILD-TYPE     74
D1448V10, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               470 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-4105 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659        TCGA-A6-5660 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664        TCGA-A6-5665 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649        TCGA-A6-6651 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654        TCGA-A6-6780 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3492 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510        TCGA-AA-3511 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517        TCGA-AA-3518 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3527        TCGA-AA-3529 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3538        TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3548        TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3554        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655        TCGA-AA-3660 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3662        TCGA-AA-3663        TCGA-AA-3664        TCGA-AA-3666 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697        TCGA-AA-3710 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00L        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A010        TCGA-AA-A01D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01P        TCGA-AA-A01R 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Z        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-2693 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-4110        TCGA-AF-5654 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3731 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-3878        TCGA-AG-3881 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A011        TCGA-AG-A015 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AU-3779        TCGA-AU-6004        TCGA-AY-4070        TCGA-AY-4071 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4681 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407        TCGA-AZ-6598 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C4 MUTATED        0      0      0      0
  SULT1C4 WILD-TYPE     33     31     27     19
D1448V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C4 MUTATED        0      0      0      0
  SULT1C4 WILD-TYPE     54     10     24     22
D1448V12, multiclass

Clustering(1449) Variable = C6ORF146 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF146 MUTATED        1      0      0      2
  C6ORF146 WILD-TYPE     45     58     64     41
D1449V1, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF146 MUTATED        2      0      1
  C6ORF146 WILD-TYPE     49     83     76
D1449V2, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF146 MUTATED        8      0      0      0
  C6ORF146 WILD-TYPE    170    183    101     20
D1449V3, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                8                170
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF146 MUTATED        2      0      3
  C6ORF146 WILD-TYPE     85     80     97
D1449V4, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF146 MUTATED        0      2      6
  C6ORF146 WILD-TYPE     89    158    132
D1449V5, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF146 MUTATED        5      2      1
  C6ORF146 WILD-TYPE    177    131     71
D1449V6, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                2                131
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF146 MUTATED        0      3      2      3
  C6ORF146 WILD-TYPE    112     93     90    183
D1449V7, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF146 MUTATED        1      0      4      0      1      0      2
  C6ORF146 WILD-TYPE     59     50     45     40     62    125     97
D1449V8, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF146 MUTATED        3      2      0      2
  C6ORF146 WILD-TYPE    127     76     68    194
D1449V9, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF146 MUTATED        0      2      0      0      4      0      1      0
  C6ORF146 WILD-TYPE     40     60     28     80     65     48     42     28
                    vv
clus                 CLUS_9
  C6ORF146 MUTATED        0
  C6ORF146 WILD-TYPE     74
D1449V10, multiclass
        clus
vv       C6ORF146 MUTATED C6ORF146 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF146 MUTATED        0      0      0      2
  C6ORF146 WILD-TYPE     33     31     27     17
D1449V11, multiclass
[1] "Remove cluster labels:" "C6ORF146 MUTATED"      
clus
  C6ORF146 MUTATED C6ORF146 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF146 MUTATED        1      0      1      0
  C6ORF146 WILD-TYPE     53     10     23     22
D1449V12, multiclass
[1] "Remove cluster labels:" "C6ORF146 MUTATED"      
clus
  C6ORF146 MUTATED C6ORF146 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" "C6ORF146 WILD-TYPE" 

Clustering(1450) Variable = DYM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYM MUTATED        0      0      0      3
  DYM WILD-TYPE     46     58     64     40
D1450V1, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           0            46
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DYM MUTATED        1      1      1
  DYM WILD-TYPE     50     82     76
D1450V2, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           1            50
  CLUS_2           1            82
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYM MUTATED        8      1      1      0
  DYM WILD-TYPE    170    182    100     20
D1450V3, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           8           170
  CLUS_2           1           182
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DYM MUTATED        4      1      2
  DYM WILD-TYPE     83     79     98
D1450V4, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           4            83
  CLUS_2           1            79
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DYM MUTATED        2      4      4
  DYM WILD-TYPE     87    156    134
D1450V5, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           2            87
  CLUS_2           4           156
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DYM MUTATED        5      5      0
  DYM WILD-TYPE    177    128     72
D1450V6, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           5           177
  CLUS_2           5           128
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYM MUTATED        1      5      1      3
  DYM WILD-TYPE    111     91     91    183
D1450V7, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           1           111
  CLUS_2           5            91
  CLUS_3           1            91
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DYM MUTATED        0      3      2      1      1      1      2
  DYM WILD-TYPE     60     47     47     39     62    124     97
D1450V8, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           0            60
  CLUS_2           3            47
  CLUS_3           2            47
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYM MUTATED        4      2      0      2
  DYM WILD-TYPE    126     76     68    194
D1450V9, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           4           126
  CLUS_2           2            76
  CLUS_3           0            68
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DYM MUTATED        1      2      2      0      1      1      0      0      1
  DYM WILD-TYPE     39     60     26     80     68     47     43     28     73
D1450V10, multiclass
        clus
vv       DYM MUTATED DYM WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           2            26
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYM MUTATED        0      1      0      1
  DYM WILD-TYPE     33     30     27     18
D1450V11, multiclass
[1] "Remove cluster labels:" "DYM MUTATED"           
clus
  DYM MUTATED DYM WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781    TCGA-A6-6782 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6600    TCGA-AZ-6601 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718    TCGA-CA-6719 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624    TCGA-CK-5916 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167    TCGA-CM-6674 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYM MUTATED        1      0      1      0
  DYM WILD-TYPE     53     10     23     22
D1450V12, multiclass
[1] "Remove cluster labels:" "DYM MUTATED"           
clus
  DYM MUTATED DYM WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781    TCGA-A6-6782 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6600    TCGA-AZ-6601 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718    TCGA-CA-6719 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624    TCGA-CK-5916 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167    TCGA-CM-6674 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"DYM WILD-TYPE" "DYM WILD-TYPE" "DYM WILD-TYPE" 

Clustering(1451) Variable = PCDH9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH9 MUTATED        6      5      4      7
  PCDH9 WILD-TYPE     40     53     60     36
D1451V1, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             5              53
  CLUS_3             4              60
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCDH9 MUTATED        8      6      8
  PCDH9 WILD-TYPE     43     77     69
D1451V2, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             6              77
  CLUS_3             8              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH9 MUTATED       25     11      8      0
  PCDH9 WILD-TYPE    153    172     93     20
D1451V3, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            25             153
  CLUS_2            11             172
  CLUS_3             8              93
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCDH9 MUTATED       10      4     10
  PCDH9 WILD-TYPE     77     76     90
D1451V4, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             4              76
  CLUS_3            10              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCDH9 MUTATED        4     18     12
  PCDH9 WILD-TYPE     85    142    126
D1451V5, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            18             142
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCDH9 MUTATED       15     14      5
  PCDH9 WILD-TYPE    167    119     67
D1451V6, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            15             167
  CLUS_2            14             119
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH9 MUTATED        7     11      5     22
  PCDH9 WILD-TYPE    105     85     87    164
D1451V7, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             7             105
  CLUS_2            11              85
  CLUS_3             5              87
  CLUS_4            22             164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDH9 MUTATED        4      3      9      2      3      9     15
  PCDH9 WILD-TYPE     56     47     40     38     60    116     84
D1451V8, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             9             116
  CLUS_7            15              84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH9 MUTATED       11      8      4     20
  PCDH9 WILD-TYPE    119     70     64    176
D1451V9, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             8              70
  CLUS_3             4              64
  CLUS_4            20             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDH9 MUTATED        3      7      2      3     10      6      2      3
  PCDH9 WILD-TYPE     37     55     26     77     59     42     41     25
                 vv
clus              CLUS_9
  PCDH9 MUTATED        7
  PCDH9 WILD-TYPE     67
D1451V10, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5            10              59
  CLUS_6             6              42
  CLUS_7             2              41
  CLUS_8             3              25
  CLUS_9             7              67
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH9 MUTATED        1      1      0      2
  PCDH9 WILD-TYPE     32     30     27     17
D1451V11, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH9 MUTATED        3      0      1      0
  PCDH9 WILD-TYPE     51     10     23     22
D1451V12, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1452) Variable = MRE11A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        0      0      0      3
  MRE11A WILD-TYPE     46     58     64     40
D1452V1, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRE11A MUTATED        1      0      2
  MRE11A WILD-TYPE     50     83     75
D1452V2, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED       13      1      0      0
  MRE11A WILD-TYPE    165    182    101     20
D1452V3, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1             13              165
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRE11A MUTATED        5      1      5
  MRE11A WILD-TYPE     82     79     95
D1452V4, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRE11A MUTATED        1      4      7
  MRE11A WILD-TYPE     88    156    131
D1452V5, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRE11A MUTATED        8      2      2
  MRE11A WILD-TYPE    174    131     70
D1452V6, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              8              174
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        1      5      5      3
  MRE11A WILD-TYPE    111     91     87    183
D1452V7, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRE11A MUTATED        3      1      6      0      2      0      2
  MRE11A WILD-TYPE     57     49     43     40     61    125     97
D1452V8, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        6      3      0      4
  MRE11A WILD-TYPE    124     75     68    192
D1452V9, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRE11A MUTATED        1      4      2      0      4      1      1      0
  MRE11A WILD-TYPE     39     58     26     80     65     47     42     28
                  vv
clus               CLUS_9
  MRE11A MUTATED        0
  MRE11A WILD-TYPE     74
D1452V10, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        3      1      0      0
  MRE11A WILD-TYPE     30     30     27     19
D1452V11, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        3      0      1      0
  MRE11A WILD-TYPE     51     10     23     22
D1452V12, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1453) Variable = CASP10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP10 MUTATED        0      1      0      1
  CASP10 WILD-TYPE     46     57     64     42
D1453V1, multiclass
[1] "Remove cluster labels:" "CASP10 MUTATED"        
clus
  CASP10 MUTATED CASP10 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AY-4071 
"CASP10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CASP10 MUTATED        0      2      0
  CASP10 WILD-TYPE     51     81     77
D1453V2, multiclass
[1] "Remove cluster labels:" "CASP10 MUTATED"        
clus
  CASP10 MUTATED CASP10 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AY-4071 
"CASP10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP10 MUTATED        4      2      1      0
  CASP10 WILD-TYPE    174    181    100     20
D1453V3, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CASP10 MUTATED        2      1      2
  CASP10 WILD-TYPE     85     79     98
D1453V4, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CASP10 MUTATED        0      5      2
  CASP10 WILD-TYPE     89    155    136
D1453V5, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CASP10 MUTATED        4      3      0
  CASP10 WILD-TYPE    178    130     72
D1453V6, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP10 MUTATED        2      2      2      1
  CASP10 WILD-TYPE    110     94     90    185
D1453V7, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP10 MUTATED        0      2      1      0      2      1      1
  CASP10 WILD-TYPE     60     48     48     40     61    124     98
D1453V8, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP10 MUTATED        3      2      0      2
  CASP10 WILD-TYPE    127     76     68    194
D1453V9, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASP10 MUTATED        0      3      3      1      0      0      0      0
  CASP10 WILD-TYPE     40     59     25     79     69     48     43     28
                  vv
clus               CLUS_9
  CASP10 MUTATED        0
  CASP10 WILD-TYPE     74
D1453V10, multiclass
        clus
vv       CASP10 MUTATED CASP10 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP10 MUTATED        0      1      0      0
  CASP10 WILD-TYPE     33     30     27     19
D1453V11, multiclass
[1] "Remove cluster labels:" "CASP10 MUTATED"        
clus
  CASP10 MUTATED CASP10 WILD-TYPE 
               1              109 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-G5-6641 
"CASP10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP10 MUTATED        1      0      0      0
  CASP10 WILD-TYPE     53     10     24     22
D1453V12, multiclass
[1] "Remove cluster labels:" "CASP10 MUTATED"        
clus
  CASP10 MUTATED CASP10 WILD-TYPE 
               1              109 
      TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" "CASP10 WILD-TYPE" 
      TCGA-G5-6641 
"CASP10 WILD-TYPE" 

Clustering(1454) Variable = TSHZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHZ1 MUTATED        1      0      0      4
  TSHZ1 WILD-TYPE     45     58     64     39
D1454V1, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TSHZ1 MUTATED        3      1      1
  TSHZ1 WILD-TYPE     48     82     76
D1454V2, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHZ1 MUTATED       12      1      0      0
  TSHZ1 WILD-TYPE    166    182    101     20
D1454V3, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TSHZ1 MUTATED        2      1      5
  TSHZ1 WILD-TYPE     85     79     95
D1454V4, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TSHZ1 MUTATED        0      5      6
  TSHZ1 WILD-TYPE     89    155    132
D1454V5, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TSHZ1 MUTATED        5      5      1
  TSHZ1 WILD-TYPE    177    128     71
D1454V6, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHZ1 MUTATED        1      5      2      5
  TSHZ1 WILD-TYPE    111     91     90    181
D1454V7, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSHZ1 MUTATED        1      2      5      1      0      0      4
  TSHZ1 WILD-TYPE     59     48     44     39     63    125     95
D1454V8, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHZ1 MUTATED        5      1      0      6
  TSHZ1 WILD-TYPE    125     77     68    190
D1454V9, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TSHZ1 MUTATED        2      1      1      1      4      0      1      1
  TSHZ1 WILD-TYPE     38     61     27     79     65     48     42     27
                 vv
clus              CLUS_9
  TSHZ1 MUTATED        1
  TSHZ1 WILD-TYPE     73
D1454V10, multiclass
        clus
vv       TSHZ1 MUTATED TSHZ1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHZ1 MUTATED        0      0      0      2
  TSHZ1 WILD-TYPE     33     31     27     17
D1454V11, multiclass
[1] "Remove cluster labels:" "TSHZ1 MUTATED"         
clus
  TSHZ1 MUTATED TSHZ1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSHZ1 MUTATED        1      0      1      0
  TSHZ1 WILD-TYPE     53     10     23     22
D1454V12, multiclass
[1] "Remove cluster labels:" "TSHZ1 MUTATED"         
clus
  TSHZ1 MUTATED TSHZ1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" "TSHZ1 WILD-TYPE" 

Clustering(1455) Variable = CCDC158 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        3      1      0      4
  CCDC158 WILD-TYPE     43     57     64     39
D1455V1, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC158 MUTATED        3      3      2
  CCDC158 WILD-TYPE     48     80     75
D1455V2, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               3                80
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED       16      2      1      0
  CCDC158 WILD-TYPE    162    181    100     20
D1455V3, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1              16               162
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC158 MUTATED        7      0      4
  CCDC158 WILD-TYPE     80     80     96
D1455V4, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC158 MUTATED        2      6      8
  CCDC158 WILD-TYPE     87    154    130
D1455V5, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               6               154
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC158 MUTATED        7      7      2
  CCDC158 WILD-TYPE    175    126     70
D1455V6, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               7               126
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        0      6      3     10
  CCDC158 WILD-TYPE    112     90     89    176
D1455V7, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               6                90
  CLUS_3               3                89
  CLUS_4              10               176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC158 MUTATED        1      2      5      0      2      3      6
  CCDC158 WILD-TYPE     59     48     44     40     61    122     93
D1455V8, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               3               122
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        4      4      0     11
  CCDC158 WILD-TYPE    126     74     68    185
D1455V9, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               4                74
  CLUS_3               0                68
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC158 MUTATED        1      4      2      3      7      0      0      0
  CCDC158 WILD-TYPE     39     58     26     77     62     48     43     28
                   vv
clus                CLUS_9
  CCDC158 MUTATED        2
  CCDC158 WILD-TYPE     72
D1455V10, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               7                62
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        1      1      0      2
  CCDC158 WILD-TYPE     32     30     27     17
D1455V11, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC158 MUTATED        3      0      1      0
  CCDC158 WILD-TYPE     51     10     23     22
D1455V12, multiclass
        clus
vv       CCDC158 MUTATED CCDC158 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1456) Variable = BRD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD2 MUTATED        2      0      0      2
  BRD2 WILD-TYPE     44     58     64     41
D1456V1, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD2 MUTATED        2      1      1
  BRD2 WILD-TYPE     49     82     76
D1456V2, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD2 MUTATED       11      1      0      0
  BRD2 WILD-TYPE    167    182    101     20
D1456V3, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD2 MUTATED        1      2      6
  BRD2 WILD-TYPE     86     78     94
D1456V4, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD2 MUTATED        0      6      4
  BRD2 WILD-TYPE     89    154    134
D1456V5, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD2 MUTATED        3      6      1
  BRD2 WILD-TYPE    179    127     71
D1456V6, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD2 MUTATED        2      5      1      4
  BRD2 WILD-TYPE    110     91     91    182
D1456V7, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRD2 MUTATED        1      3      3      0      1      1      3
  BRD2 WILD-TYPE     59     47     46     40     62    124     96
D1456V8, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD2 MUTATED        2      1      2      7
  BRD2 WILD-TYPE    128     77     66    189
D1456V9, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BRD2 MUTATED        0      0      1      3      6      1      1      0      0
  BRD2 WILD-TYPE     40     62     27     77     63     47     42     28     74
D1456V10, multiclass
        clus
vv       BRD2 MUTATED BRD2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD2 MUTATED        0      1      0      0
  BRD2 WILD-TYPE     33     30     27     19
D1456V11, multiclass
[1] "Remove cluster labels:" "BRD2 MUTATED"          
clus
  BRD2 MUTATED BRD2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-DC-5337     TCGA-DC-5869 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-G5-6641 
"BRD2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD2 MUTATED        0      0      0      1
  BRD2 WILD-TYPE     54     10     24     21
D1456V12, multiclass
[1] "Remove cluster labels:" "BRD2 MUTATED"          
clus
  BRD2 MUTATED BRD2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-DC-5337     TCGA-DC-5869 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" "BRD2 WILD-TYPE" 
    TCGA-G5-6641 
"BRD2 WILD-TYPE" 

Clustering(1457) Variable = KIAA2022 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2022 MUTATED        4      2      2      5
  KIAA2022 WILD-TYPE     42     56     62     38
D1457V1, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                2                 56
  CLUS_3                2                 62
  CLUS_4                5                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2022 MUTATED        5      6      2
  KIAA2022 WILD-TYPE     46     77     75
D1457V2, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                6                 77
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2022 MUTATED       16     14      8      1
  KIAA2022 WILD-TYPE    162    169     93     19
D1457V3, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1               16                162
  CLUS_2               14                169
  CLUS_3                8                 93
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2022 MUTATED        8      7     10
  KIAA2022 WILD-TYPE     79     73     90
D1457V4, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                8                 79
  CLUS_2                7                 73
  CLUS_3               10                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2022 MUTATED        5     10     13
  KIAA2022 WILD-TYPE     84    150    125
D1457V5, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                5                 84
  CLUS_2               10                150
  CLUS_3               13                125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2022 MUTATED       15     11      2
  KIAA2022 WILD-TYPE    167    122     70
D1457V6, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1               15                167
  CLUS_2               11                122
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2022 MUTATED       13      5     10     11
  KIAA2022 WILD-TYPE     99     91     82    175
D1457V7, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1               13                 99
  CLUS_2                5                 91
  CLUS_3               10                 82
  CLUS_4               11                175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA2022 MUTATED        6      6      5      3      5      5      9
  KIAA2022 WILD-TYPE     54     44     44     37     58    120     90
D1457V8, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                6                 54
  CLUS_2                6                 44
  CLUS_3                5                 44
  CLUS_4                3                 37
  CLUS_5                5                 58
  CLUS_6                5                120
  CLUS_7                9                 90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2022 MUTATED       14      6      6     10
  KIAA2022 WILD-TYPE    116     72     62    186
D1457V9, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1               14                116
  CLUS_2                6                 72
  CLUS_3                6                 62
  CLUS_4               10                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA2022 MUTATED        2      7      5      5      7      2      4      1
  KIAA2022 WILD-TYPE     38     55     23     75     62     46     39     27
                    vv
clus                 CLUS_9
  KIAA2022 MUTATED        3
  KIAA2022 WILD-TYPE     71
D1457V10, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                7                 55
  CLUS_3                5                 23
  CLUS_4                5                 75
  CLUS_5                7                 62
  CLUS_6                2                 46
  CLUS_7                4                 39
  CLUS_8                1                 27
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2022 MUTATED        5      2      0      3
  KIAA2022 WILD-TYPE     28     29     27     16
D1457V11, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                5                 28
  CLUS_2                2                 29
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2022 MUTATED        8      1      0      1
  KIAA2022 WILD-TYPE     46      9     24     21
D1457V12, multiclass
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                1                  9
  CLUS_3                0                 24
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1458) Variable = GRM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED        5      0      3      2
  GRM1 WILD-TYPE     41     58     61     41
D1458V1, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            0             58
  CLUS_3            3             61
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM1 MUTATED        6      1      3
  GRM1 WILD-TYPE     45     82     74
D1458V2, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED       21      5      3      3
  GRM1 WILD-TYPE    157    178     98     17
D1458V3, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1           21            157
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM1 MUTATED        9      3      8
  GRM1 WILD-TYPE     78     77     92
D1458V4, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            3             77
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM1 MUTATED        8      6     13
  GRM1 WILD-TYPE     81    154    125
D1458V5, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            8             81
  CLUS_2            6            154
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRM1 MUTATED       16      8      3
  GRM1 WILD-TYPE    166    125     69
D1458V6, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1           16            166
  CLUS_2            8            125
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED        4      5     12     10
  GRM1 WILD-TYPE    108     91     80    176
D1458V7, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            5             91
  CLUS_3           12             80
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRM1 MUTATED        3      4      8      1      4      3      8
  GRM1 WILD-TYPE     57     46     41     39     59    122     91
D1458V8, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            3            122
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED       11      5      1     14
  GRM1 WILD-TYPE    119     73     67    182
D1458V9, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1           11            119
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4           14            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GRM1 MUTATED        6      4      1      3      9      3      1      3      1
  GRM1 WILD-TYPE     34     58     27     77     60     45     42     25     73
D1458V10, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            9             60
  CLUS_6            3             45
  CLUS_7            1             42
  CLUS_8            3             25
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED        5      0      1      2
  GRM1 WILD-TYPE     28     31     26     17
D1458V11, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRM1 MUTATED        6      0      1      1
  GRM1 WILD-TYPE     48     10     23     21
D1458V12, multiclass
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1459) Variable = WFDC10B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC10B MUTATED        0      0      0      0
  WFDC10B WILD-TYPE     46     58     64     43
D1459V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WFDC10B MUTATED        0      0      0
  WFDC10B WILD-TYPE     51     83     77
D1459V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC10B MUTATED        2      1      2      0
  WFDC10B WILD-TYPE    176    182     99     20
D1459V3, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WFDC10B MUTATED        1      2      2
  WFDC10B WILD-TYPE     86     78     98
D1459V4, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WFDC10B MUTATED        2      2      1
  WFDC10B WILD-TYPE     87    158    137
D1459V5, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WFDC10B MUTATED        2      1      2
  WFDC10B WILD-TYPE    180    132     70
D1459V6, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               2               180
  CLUS_2               1               132
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC10B MUTATED        2      3      0      0
  WFDC10B WILD-TYPE    110     93     92    186
D1459V7, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               2               110
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WFDC10B MUTATED        0      1      2      0      2      0      0
  WFDC10B WILD-TYPE     60     49     47     40     61    125     99
D1459V8, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC10B MUTATED        2      1      1      1
  WFDC10B WILD-TYPE    128     77     67    195
D1459V9, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WFDC10B MUTATED        0      1      1      0      1      0      2      0
  WFDC10B WILD-TYPE     40     61     27     80     68     48     41     28
                   vv
clus                CLUS_9
  WFDC10B MUTATED        0
  WFDC10B WILD-TYPE     74
D1459V10, multiclass
        clus
vv       WFDC10B MUTATED WFDC10B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC10B MUTATED        1      1      0      0
  WFDC10B WILD-TYPE     32     30     27     19
D1459V11, multiclass
[1] "Remove cluster labels:" "WFDC10B MUTATED"       
clus
  WFDC10B MUTATED WFDC10B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6460        TCGA-F4-6569 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC10B MUTATED        0      1      0      1
  WFDC10B WILD-TYPE     54      9     24     21
D1459V12, multiclass
[1] "Remove cluster labels:" "WFDC10B MUTATED"       
clus
  WFDC10B MUTATED WFDC10B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6460        TCGA-F4-6569 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" "WFDC10B WILD-TYPE" 

Clustering(1460) Variable = KIAA0240 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        2      0      0      4
  KIAA0240 WILD-TYPE     44     58     64     39
D1460V1, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        5      0      1
  KIAA0240 WILD-TYPE     46     83     76
D1460V2, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                0                 83
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED       10      0      1      0
  KIAA0240 WILD-TYPE    168    183    100     20
D1460V3, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1               10                168
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        2      0      3
  KIAA0240 WILD-TYPE     85     80     97
D1460V4, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        1      2      5
  KIAA0240 WILD-TYPE     88    158    133
D1460V5, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        4      3      1
  KIAA0240 WILD-TYPE    178    130     71
D1460V6, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        0      2      2      7
  KIAA0240 WILD-TYPE    112     94     90    179
D1460V7, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                2                 90
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0240 MUTATED        1      0      3      1      0      0      6
  KIAA0240 WILD-TYPE     59     50     46     39     63    125     93
D1460V8, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        3      1      1      5
  KIAA0240 WILD-TYPE    127     77     67    191
D1460V9, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0240 MUTATED        1      1      1      0      3      0      1      1
  KIAA0240 WILD-TYPE     39     61     27     80     66     48     42     27
                    vv
clus                 CLUS_9
  KIAA0240 MUTATED        2
  KIAA0240 WILD-TYPE     72
D1460V10, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        0      0      0      1
  KIAA0240 WILD-TYPE     33     31     27     18
D1460V11, multiclass
[1] "Remove cluster labels:" "KIAA0240 MUTATED"      
clus
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6704         TCGA-F4-6805 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6808         TCGA-F4-6809 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F5-6464         TCGA-F5-6465         TCGA-F5-6571 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F5-6702         TCGA-F5-6811         TCGA-F5-6812 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-G4-6299         TCGA-G4-6303         TCGA-G4-6306 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6625         TCGA-G5-6235 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-G5-6641 
"KIAA0240 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        1      0      0      0
  KIAA0240 WILD-TYPE     53     10     24     22
D1460V12, multiclass
[1] "Remove cluster labels:" "KIAA0240 MUTATED"      
clus
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6704         TCGA-F4-6805 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6808         TCGA-F4-6809 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F5-6464         TCGA-F5-6465         TCGA-F5-6571 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-F5-6702         TCGA-F5-6811         TCGA-F5-6812 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-G4-6299         TCGA-G4-6303         TCGA-G4-6306 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6625         TCGA-G5-6235 
"KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" "KIAA0240 WILD-TYPE" 
        TCGA-G5-6641 
"KIAA0240 WILD-TYPE" 

Clustering(1461) Variable = PSMB8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB8 MUTATED        0      0      1      2
  PSMB8 WILD-TYPE     46     58     63     41
D1461V1, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB8 MUTATED        0      0      3
  PSMB8 WILD-TYPE     51     83     74
D1461V2, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB8 MUTATED        6      1      0      0
  PSMB8 WILD-TYPE    172    182    101     20
D1461V3, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB8 MUTATED        1      0      3
  PSMB8 WILD-TYPE     86     80     97
D1461V4, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB8 MUTATED        0      4      2
  PSMB8 WILD-TYPE     89    156    136
D1461V5, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSMB8 MUTATED        2      4      0
  PSMB8 WILD-TYPE    180    129     72
D1461V6, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB8 MUTATED        0      4      0      3
  PSMB8 WILD-TYPE    112     92     92    183
D1461V7, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMB8 MUTATED        0      1      3      0      0      0      3
  PSMB8 WILD-TYPE     60     49     46     40     63    125     96
D1461V8, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB8 MUTATED        3      1      0      3
  PSMB8 WILD-TYPE    127     77     68    193
D1461V9, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PSMB8 MUTATED        0      1      1      0      2      0      0      0
  PSMB8 WILD-TYPE     40     61     27     80     67     48     43     28
                 vv
clus              CLUS_9
  PSMB8 MUTATED        3
  PSMB8 WILD-TYPE     71
D1461V10, multiclass
        clus
vv       PSMB8 MUTATED PSMB8 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB8 MUTATED        0      0      0      1
  PSMB8 WILD-TYPE     33     31     27     18
D1461V11, multiclass
[1] "Remove cluster labels:" "PSMB8 MUTATED"         
clus
  PSMB8 MUTATED PSMB8 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-G5-6641 
"PSMB8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMB8 MUTATED        0      0      1      0
  PSMB8 WILD-TYPE     54     10     23     22
D1461V12, multiclass
[1] "Remove cluster labels:" "PSMB8 MUTATED"         
clus
  PSMB8 MUTATED PSMB8 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" "PSMB8 WILD-TYPE" 
     TCGA-G5-6641 
"PSMB8 WILD-TYPE" 

Clustering(1462) Variable = BTF3L4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTF3L4 MUTATED        0      0      0      0
  BTF3L4 WILD-TYPE     46     58     64     43
D1462V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTF3L4 MUTATED        0      0      0
  BTF3L4 WILD-TYPE     51     83     77
D1462V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTF3L4 MUTATED        3      1      0      1
  BTF3L4 WILD-TYPE    175    182    101     19
D1462V3, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTF3L4 MUTATED        3      1      1
  BTF3L4 WILD-TYPE     84     79     99
D1462V4, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTF3L4 MUTATED        0      1      3
  BTF3L4 WILD-TYPE     89    159    135
D1462V5, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTF3L4 MUTATED        3      1      0
  BTF3L4 WILD-TYPE    179    132     72
D1462V6, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTF3L4 MUTATED        1      2      2      0
  BTF3L4 WILD-TYPE    111     94     90    186
D1462V7, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTF3L4 MUTATED        1      0      3      1      0      0      0
  BTF3L4 WILD-TYPE     59     50     46     39     63    125     99
D1462V8, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTF3L4 MUTATED        3      1      1      0
  BTF3L4 WILD-TYPE    127     77     67    196
D1462V9, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BTF3L4 MUTATED        1      1      0      1      1      0      1      0
  BTF3L4 WILD-TYPE     39     61     28     79     68     48     42     28
                  vv
clus               CLUS_9
  BTF3L4 MUTATED        0
  BTF3L4 WILD-TYPE     74
D1462V10, multiclass
        clus
vv       BTF3L4 MUTATED BTF3L4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTF3L4 MUTATED        1      0      0      1
  BTF3L4 WILD-TYPE     32     31     27     18
D1462V11, multiclass
[1] "Remove cluster labels:" "BTF3L4 MUTATED"        
clus
  BTF3L4 MUTATED BTF3L4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTF3L4 MUTATED        2      0      0      0
  BTF3L4 WILD-TYPE     52     10     24     22
D1462V12, multiclass
[1] "Remove cluster labels:" "BTF3L4 MUTATED"        
clus
  BTF3L4 MUTATED BTF3L4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6965       TCGA-AF-2687 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" "BTF3L4 WILD-TYPE" 

Clustering(1463) Variable = SYNGR4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGR4 MUTATED        0      1      0      1
  SYNGR4 WILD-TYPE     46     57     64     42
D1463V1, multiclass
[1] "Remove cluster labels:" "SYNGR4 MUTATED"        
clus
  SYNGR4 MUTATED SYNGR4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AY-4071 
"SYNGR4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SYNGR4 MUTATED        1      1      0
  SYNGR4 WILD-TYPE     50     82     77
D1463V2, multiclass
[1] "Remove cluster labels:" "SYNGR4 MUTATED"        
clus
  SYNGR4 MUTATED SYNGR4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AY-4071 
"SYNGR4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGR4 MUTATED        4      2      0      0
  SYNGR4 WILD-TYPE    174    181    101     20
D1463V3, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SYNGR4 MUTATED        2      0      2
  SYNGR4 WILD-TYPE     85     80     98
D1463V4, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SYNGR4 MUTATED        0      1      5
  SYNGR4 WILD-TYPE     89    159    133
D1463V5, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SYNGR4 MUTATED        4      1      1
  SYNGR4 WILD-TYPE    178    132     71
D1463V6, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGR4 MUTATED        0      2      2      2
  SYNGR4 WILD-TYPE    112     94     90    184
D1463V7, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNGR4 MUTATED        0      2      2      0      0      1      1
  SYNGR4 WILD-TYPE     60     48     47     40     63    124     98
D1463V8, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGR4 MUTATED        1      2      0      2
  SYNGR4 WILD-TYPE    129     76     68    194
D1463V9, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SYNGR4 MUTATED        0      3      0      0      0      0      0      1
  SYNGR4 WILD-TYPE     40     59     28     80     69     48     43     27
                  vv
clus               CLUS_9
  SYNGR4 MUTATED        1
  SYNGR4 WILD-TYPE     73
D1463V10, multiclass
        clus
vv       SYNGR4 MUTATED SYNGR4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGR4 MUTATED        1      0      0      1
  SYNGR4 WILD-TYPE     32     31     27     18
D1463V11, multiclass
[1] "Remove cluster labels:" "SYNGR4 MUTATED"        
clus
  SYNGR4 MUTATED SYNGR4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901       TCGA-AD-6963 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNGR4 MUTATED        2      0      0      0
  SYNGR4 WILD-TYPE     52     10     24     22
D1463V12, multiclass
[1] "Remove cluster labels:" "SYNGR4 MUTATED"        
clus
  SYNGR4 MUTATED SYNGR4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901       TCGA-AD-6963 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" "SYNGR4 WILD-TYPE" 

Clustering(1464) Variable = OR2AE1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2AE1 MUTATED        0      0      1      1
  OR2AE1 WILD-TYPE     46     58     63     42
D1464V1, multiclass
[1] "Remove cluster labels:" "OR2AE1 MUTATED"        
clus
  OR2AE1 MUTATED OR2AE1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AY-4071 
"OR2AE1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2AE1 MUTATED        0      1      1
  OR2AE1 WILD-TYPE     51     82     76
D1464V2, multiclass
[1] "Remove cluster labels:" "OR2AE1 MUTATED"        
clus
  OR2AE1 MUTATED OR2AE1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AY-4071 
"OR2AE1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2AE1 MUTATED        2      1      0      0
  OR2AE1 WILD-TYPE    176    182    101     20
D1464V3, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2AE1 MUTATED        0      0      1
  OR2AE1 WILD-TYPE     87     80     99
D1464V4, multiclass
[1] "Remove cluster labels:" "OR2AE1 MUTATED"        
clus
  OR2AE1 MUTATED OR2AE1 WILD-TYPE 
               1              266 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AF-2693       TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6386 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DM-A28H       TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-G4-6317       TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-G4-6588       TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
      TCGA-G5-6235       TCGA-G5-6641 
"OR2AE1 WILD-TYPE" "OR2AE1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2AE1 MUTATED        1      2      0
  OR2AE1 WILD-TYPE     88    158    138
D1464V5, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              0              138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR2AE1 MUTATED        1      1      1
  OR2AE1 WILD-TYPE    181    132     71
D1464V6, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2AE1 MUTATED        0      1      0      2
  OR2AE1 WILD-TYPE    112     95     92    184
D1464V7, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2AE1 MUTATED        1      0      1      0      0      1      0
  OR2AE1 WILD-TYPE     59     50     48     40     63    124     99
D1464V8, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2AE1 MUTATED        1      0      1      1
  OR2AE1 WILD-TYPE    129     78     67    195
D1464V9, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2AE1 MUTATED        1      0      0      0      1      0      0      0
  OR2AE1 WILD-TYPE     39     62     28     80     68     48     43     28
                  vv
clus               CLUS_9
  OR2AE1 MUTATED        1
  OR2AE1 WILD-TYPE     73
D1464V10, multiclass
        clus
vv       OR2AE1 MUTATED OR2AE1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2AE1 MUTATED        0      0      0      0
  OR2AE1 WILD-TYPE     33     31     27     19
D1464V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2AE1 MUTATED        0      0      0      0
  OR2AE1 WILD-TYPE     54     10     24     22
D1464V12, multiclass

Clustering(1465) Variable = SMAP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP1 MUTATED        1      0      0      1
  SMAP1 WILD-TYPE     45     58     64     42
D1465V1, multiclass
[1] "Remove cluster labels:" "SMAP1 MUTATED"         
clus
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AY-4071 
"SMAP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAP1 MUTATED        1      0      1
  SMAP1 WILD-TYPE     50     83     76
D1465V2, multiclass
[1] "Remove cluster labels:" "SMAP1 MUTATED"         
clus
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AY-4071 
"SMAP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP1 MUTATED        3      0      0      0
  SMAP1 WILD-TYPE    175    183    101     20
D1465V3, multiclass
        clus
vv       SMAP1 MUTATED SMAP1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAP1 MUTATED        0      0      1
  SMAP1 WILD-TYPE     87     80     99
D1465V4, multiclass
[1] "Remove cluster labels:" "SMAP1 MUTATED"         
clus
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              1             266 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713      TCGA-AD-5900 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889      TCGA-AD-6890 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901      TCGA-AD-6963 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2693 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742      TCGA-AG-A01W 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02N 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4681 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407      TCGA-AZ-6598 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5862      TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAP1 MUTATED        1      1      0
  SMAP1 WILD-TYPE     88    159    138
D1465V5, multiclass
[1] "Remove cluster labels:" "SMAP1 MUTATED"         
clus
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3811 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-6004 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4682 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6621 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918      TCGA-CM-4743 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G5-6641 
"SMAP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAP1 MUTATED        0      1      1
  SMAP1 WILD-TYPE    182    132     71
D1465V6, multiclass
[1] "Remove cluster labels:" "SMAP1 MUTATED"         
clus
  SMAP1 MUTATED SMAP1 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3811 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-6004 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4682 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6621 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918      TCGA-CM-4743 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" "SMAP1 WILD-TYPE" 
     TCGA-G5-6641 
"SMAP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP1 MUTATED        0      1      0      2
  SMAP1 WILD-TYPE    112     95     92    184
D1465V7, multiclass
        clus
vv       SMAP1 MUTATED SMAP1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMAP1 MUTATED        1      0      1      0      0      0      1
  SMAP1 WILD-TYPE     59     50     48     40     63    125     98
D1465V8, multiclass
        clus
vv       SMAP1 MUTATED SMAP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP1 MUTATED        1      0      0      2
  SMAP1 WILD-TYPE    129     78     68    194
D1465V9, multiclass
        clus
vv       SMAP1 MUTATED SMAP1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMAP1 MUTATED        0      0      0      0      3      0      0      0
  SMAP1 WILD-TYPE     40     62     28     80     66     48     43     28
                 vv
clus              CLUS_9
  SMAP1 MUTATED        0
  SMAP1 WILD-TYPE     74
D1465V10, multiclass
        clus
vv       SMAP1 MUTATED SMAP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP1 MUTATED        0      0      0      0
  SMAP1 WILD-TYPE     33     31     27     19
D1465V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP1 MUTATED        0      0      0      0
  SMAP1 WILD-TYPE     54     10     24     22
D1465V12, multiclass

Clustering(1466) Variable = GON4L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        4      0      0      3
  GON4L WILD-TYPE     42     58     64     40
D1466V1, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        4      2      1
  GON4L WILD-TYPE     47     81     76
D1466V2, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED       19      2      2      0
  GON4L WILD-TYPE    159    181     99     20
D1466V3, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1            19             159
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        5      1     11
  GON4L WILD-TYPE     82     79     89
D1466V4, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        2     10      9
  GON4L WILD-TYPE     87    150    129
D1466V5, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             2              87
  CLUS_2            10             150
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED       10      7      4
  GON4L WILD-TYPE    172    126     68
D1466V6, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1            10             172
  CLUS_2             7             126
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        0      8      6      9
  GON4L WILD-TYPE    112     88     86    177
D1466V7, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0             112
  CLUS_2             8              88
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GON4L MUTATED        2      4      7      0      2      2      6
  GON4L WILD-TYPE     58     46     42     40     61    123     93
D1466V8, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        8      3      1     10
  GON4L WILD-TYPE    122     75     67    186
D1466V9, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GON4L MUTATED        1      2      2      7      5      0      2      1
  GON4L WILD-TYPE     39     60     26     73     64     48     41     27
                 vv
clus              CLUS_9
  GON4L MUTATED        2
  GON4L WILD-TYPE     72
D1466V10, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             7              73
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        0      1      1      5
  GON4L WILD-TYPE     33     30     26     14
D1466V11, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        2      0      5      0
  GON4L WILD-TYPE     52     10     19     22
D1466V12, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1467) Variable = NDST3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST3 MUTATED        3      3      0      3
  NDST3 WILD-TYPE     43     55     64     40
D1467V1, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             3              55
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST3 MUTATED        4      4      1
  NDST3 WILD-TYPE     47     79     76
D1467V2, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             4              79
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST3 MUTATED       13      3      1      1
  NDST3 WILD-TYPE    165    180    100     19
D1467V3, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST3 MUTATED        6      2      2
  NDST3 WILD-TYPE     81     78     98
D1467V4, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST3 MUTATED        5      5      5
  NDST3 WILD-TYPE     84    155    133
D1467V5, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST3 MUTATED        7      6      2
  NDST3 WILD-TYPE    175    127     70
D1467V6, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST3 MUTATED        3      2      4      9
  NDST3 WILD-TYPE    109     94     88    177
D1467V7, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NDST3 MUTATED        1      2      3      0      2      3      7
  NDST3 WILD-TYPE     59     48     46     40     61    122     92
D1467V8, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST3 MUTATED        3      3      1     10
  NDST3 WILD-TYPE    127     75     67    186
D1467V9, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NDST3 MUTATED        1      3      2      2      3      1      0      1
  NDST3 WILD-TYPE     39     59     26     78     66     47     43     27
                 vv
clus              CLUS_9
  NDST3 MUTATED        4
  NDST3 WILD-TYPE     70
D1467V10, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST3 MUTATED        1      0      0      2
  NDST3 WILD-TYPE     32     31     27     17
D1467V11, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST3 MUTATED        3      0      0      0
  NDST3 WILD-TYPE     51     10     24     22
D1467V12, multiclass
        clus
vv       NDST3 MUTATED NDST3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1468) Variable = MAGEA4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA4 MUTATED        0      0      0      1
  MAGEA4 WILD-TYPE     46     58     64     42
D1468V1, multiclass
[1] "Remove cluster labels:" "MAGEA4 MUTATED"        
clus
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA4 MUTATED        0      0      1
  MAGEA4 WILD-TYPE     51     83     76
D1468V2, multiclass
[1] "Remove cluster labels:" "MAGEA4 MUTATED"        
clus
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA4 MUTATED        4      1      1      1
  MAGEA4 WILD-TYPE    174    182    100     19
D1468V3, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA4 MUTATED        1      1      3
  MAGEA4 WILD-TYPE     86     79     97
D1468V4, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA4 MUTATED        2      3      2
  MAGEA4 WILD-TYPE     87    157    136
D1468V5, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEA4 MUTATED        4      2      1
  MAGEA4 WILD-TYPE    178    131     71
D1468V6, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA4 MUTATED        1      2      2      1
  MAGEA4 WILD-TYPE    111     94     90    185
D1468V7, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGEA4 MUTATED        1      1      3      0      1      0      0
  MAGEA4 WILD-TYPE     59     49     46     40     62    125     99
D1468V8, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA4 MUTATED        2      2      0      3
  MAGEA4 WILD-TYPE    128     76     68    193
D1468V9, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAGEA4 MUTATED        0      2      0      1      3      1      0      0
  MAGEA4 WILD-TYPE     40     60     28     79     66     47     43     28
                  vv
clus               CLUS_9
  MAGEA4 MUTATED        0
  MAGEA4 WILD-TYPE     74
D1468V10, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA4 MUTATED        0      1      0      2
  MAGEA4 WILD-TYPE     33     30     27     17
D1468V11, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA4 MUTATED        1      1      1      0
  MAGEA4 WILD-TYPE     53      9     23     22
D1468V12, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1469) Variable = RPS6KA5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        2      0      0      3
  RPS6KA5 WILD-TYPE     44     58     64     40
D1469V1, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA5 MUTATED        4      0      1
  RPS6KA5 WILD-TYPE     47     83     76
D1469V2, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        9      2      0      0
  RPS6KA5 WILD-TYPE    169    181    101     20
D1469V3, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA5 MUTATED        3      0      3
  RPS6KA5 WILD-TYPE     84     80     97
D1469V4, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA5 MUTATED        1      4      6
  RPS6KA5 WILD-TYPE     88    156    132
D1469V5, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA5 MUTATED        4      6      1
  RPS6KA5 WILD-TYPE    178    127     71
D1469V6, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               6               127
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        0      5      1      5
  RPS6KA5 WILD-TYPE    112     91     91    181
D1469V7, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               5                91
  CLUS_3               1                91
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPS6KA5 MUTATED        1      3      2      0      1      0      4
  RPS6KA5 WILD-TYPE     59     47     47     40     62    125     95
D1469V8, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        3      1      1      4
  RPS6KA5 WILD-TYPE    127     77     67    192
D1469V9, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RPS6KA5 MUTATED        0      1      0      0      5      0      2      0
  RPS6KA5 WILD-TYPE     40     61     28     80     64     48     41     28
                   vv
clus                CLUS_9
  RPS6KA5 MUTATED        1
  RPS6KA5 WILD-TYPE     73
D1469V10, multiclass
        clus
vv       RPS6KA5 MUTATED RPS6KA5 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        0      0      0      1
  RPS6KA5 WILD-TYPE     33     31     27     18
D1469V11, multiclass
[1] "Remove cluster labels:" "RPS6KA5 MUTATED"       
clus
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-G5-6641 
"RPS6KA5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA5 MUTATED        0      0      1      0
  RPS6KA5 WILD-TYPE     54     10     23     22
D1469V12, multiclass
[1] "Remove cluster labels:" "RPS6KA5 MUTATED"       
clus
  RPS6KA5 MUTATED RPS6KA5 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" "RPS6KA5 WILD-TYPE" 
       TCGA-G5-6641 
"RPS6KA5 WILD-TYPE" 

Clustering(1470) Variable = KLHL34 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL34 MUTATED        0      0      1      0
  KLHL34 WILD-TYPE     46     58     63     43
D1470V1, multiclass
[1] "Remove cluster labels:" "KLHL34 MUTATED"        
clus
  KLHL34 MUTATED KLHL34 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL34 MUTATED        0      0      1
  KLHL34 WILD-TYPE     51     83     76
D1470V2, multiclass
[1] "Remove cluster labels:" "KLHL34 MUTATED"        
clus
  KLHL34 MUTATED KLHL34 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"KLHL34 WILD-TYPE" "KLHL34 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL34 MUTATED        8      3      2      0
  KLHL34 WILD-TYPE    170    180     99     20
D1470V3, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL34 MUTATED        2      2      8
  KLHL34 WILD-TYPE     85     78     92
D1470V4, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL34 MUTATED        0      4      6
  KLHL34 WILD-TYPE     89    156    132
D1470V5, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL34 MUTATED        5      4      1
  KLHL34 WILD-TYPE    177    129     71
D1470V6, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL34 MUTATED        2      8      2      1
  KLHL34 WILD-TYPE    110     88     90    185
D1470V7, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              2               90
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLHL34 MUTATED        1      0     10      0      1      1      0
  KLHL34 WILD-TYPE     59     50     39     40     62    124     99
D1470V8, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3             10               39
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL34 MUTATED       11      0      0      2
  KLHL34 WILD-TYPE    119     78     68    194
D1470V9, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1             11              119
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLHL34 MUTATED        1      2      0      1      6      2      1      0
  KLHL34 WILD-TYPE     39     60     28     79     63     46     42     28
                  vv
clus               CLUS_9
  KLHL34 MUTATED        0
  KLHL34 WILD-TYPE     74
D1470V10, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL34 MUTATED        0      0      0      3
  KLHL34 WILD-TYPE     33     31     27     16
D1470V11, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL34 MUTATED        0      0      2      1
  KLHL34 WILD-TYPE     54     10     22     21
D1470V12, multiclass
        clus
vv       KLHL34 MUTATED KLHL34 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1471) Variable = EIF2AK3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        1      0      0      1
  EIF2AK3 WILD-TYPE     45     58     64     42
D1471V1, multiclass
[1] "Remove cluster labels:" "EIF2AK3 MUTATED"       
clus
  EIF2AK3 MUTATED EIF2AK3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AY-4071 
"EIF2AK3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK3 MUTATED        1      0      1
  EIF2AK3 WILD-TYPE     50     83     76
D1471V2, multiclass
[1] "Remove cluster labels:" "EIF2AK3 MUTATED"       
clus
  EIF2AK3 MUTATED EIF2AK3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" "EIF2AK3 WILD-TYPE" 
       TCGA-AY-4071 
"EIF2AK3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        8      1      3      0
  EIF2AK3 WILD-TYPE    170    182     98     20
D1471V3, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               1               182
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK3 MUTATED        6      2      2
  EIF2AK3 WILD-TYPE     81     78     98
D1471V4, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK3 MUTATED        2      2      6
  EIF2AK3 WILD-TYPE     87    158    132
D1471V5, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK3 MUTATED        7      2      1
  EIF2AK3 WILD-TYPE    175    131     71
D1471V6, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        1      2      6      3
  EIF2AK3 WILD-TYPE    111     94     86    183
D1471V7, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               6                86
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF2AK3 MUTATED        2      2      3      0      3      1      1
  EIF2AK3 WILD-TYPE     58     48     46     40     60    124     98
D1471V8, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        4      5      0      3
  EIF2AK3 WILD-TYPE    126     73     68    193
D1471V9, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF2AK3 MUTATED        1      5      0      2      3      0      0      0
  EIF2AK3 WILD-TYPE     39     57     28     78     66     48     43     28
                   vv
clus                CLUS_9
  EIF2AK3 MUTATED        1
  EIF2AK3 WILD-TYPE     73
D1471V10, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               5                57
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        2      1      0      1
  EIF2AK3 WILD-TYPE     31     30     27     18
D1471V11, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        4      0      0      0
  EIF2AK3 WILD-TYPE     50     10     24     22
D1471V12, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1472) Variable = CDC73 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC73 MUTATED        3      1      0      4
  CDC73 WILD-TYPE     43     57     64     39
D1472V1, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC73 MUTATED        5      1      2
  CDC73 WILD-TYPE     46     82     75
D1472V2, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC73 MUTATED        9      9      3      0
  CDC73 WILD-TYPE    169    174     98     20
D1472V3, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             9             174
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC73 MUTATED        6      2      7
  CDC73 WILD-TYPE     81     78     93
D1472V4, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC73 MUTATED        1      6     12
  CDC73 WILD-TYPE     88    154    126
D1472V5, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC73 MUTATED       10      6      3
  CDC73 WILD-TYPE    172    127     69
D1472V6, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC73 MUTATED        2      8      4      8
  CDC73 WILD-TYPE    110     88     88    178
D1472V7, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             4              88
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC73 MUTATED        2      6      3      1      1      2      7
  CDC73 WILD-TYPE     58     44     46     39     62    123     92
D1472V8, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             6              44
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC73 MUTATED        8      3      1      8
  CDC73 WILD-TYPE    122     75     67    188
D1472V9, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDC73 MUTATED        1      3      3      4      4      1      2      1
  CDC73 WILD-TYPE     39     59     25     76     65     47     41     27
                 vv
clus              CLUS_9
  CDC73 MUTATED        1
  CDC73 WILD-TYPE     73
D1472V10, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC73 MUTATED        1      2      1      1
  CDC73 WILD-TYPE     32     29     26     18
D1472V11, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC73 MUTATED        2      1      2      0
  CDC73 WILD-TYPE     52      9     22     22
D1472V12, multiclass
        clus
vv       CDC73 MUTATED CDC73 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1473) Variable = MYH15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH15 MUTATED        4      1      0      3
  MYH15 WILD-TYPE     42     57     64     40
D1473V1, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH15 MUTATED        4      3      1
  MYH15 WILD-TYPE     47     80     76
D1473V2, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH15 MUTATED       20      7      1      1
  MYH15 WILD-TYPE    158    176    100     19
D1473V3, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1            20             158
  CLUS_2             7             176
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH15 MUTATED       10      3      8
  MYH15 WILD-TYPE     77     77     92
D1473V4, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1            10              77
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH15 MUTATED        3      9     10
  MYH15 WILD-TYPE     86    151    128
D1473V5, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             9             151
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH15 MUTATED        9      9      4
  MYH15 WILD-TYPE    173    124     68
D1473V6, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             9             124
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH15 MUTATED        4      8      8      9
  MYH15 WILD-TYPE    108     88     84    177
D1473V7, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             8              88
  CLUS_3             8              84
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH15 MUTATED        3      5      7      1      5      2      6
  MYH15 WILD-TYPE     57     45     42     39     58    123     93
D1473V8, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             5              45
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             5              58
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH15 MUTATED        9      7      3     10
  MYH15 WILD-TYPE    121     71     65    186
D1473V9, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             7              71
  CLUS_3             3              65
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYH15 MUTATED        2      7      1      7      7      1      2      0
  MYH15 WILD-TYPE     38     55     27     73     62     47     41     28
                 vv
clus              CLUS_9
  MYH15 MUTATED        2
  MYH15 WILD-TYPE     72
D1473V10, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             7              55
  CLUS_3             1              27
  CLUS_4             7              73
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH15 MUTATED        3      2      2      3
  MYH15 WILD-TYPE     30     29     25     16
D1473V11, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH15 MUTATED        6      0      1      3
  MYH15 WILD-TYPE     48     10     23     19
D1473V12, multiclass
        clus
vv       MYH15 MUTATED MYH15 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1474) Variable = SPEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPEN MUTATED        7      1      1      4
  SPEN WILD-TYPE     39     57     63     39
D1474V1, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            7             39
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPEN MUTATED        9      1      3
  SPEN WILD-TYPE     42     82     74
D1474V2, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            9             42
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPEN MUTATED       25      5      3      1
  SPEN WILD-TYPE    153    178     98     19
D1474V3, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1           25            153
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPEN MUTATED        4      2     16
  SPEN WILD-TYPE     83     78     84
D1474V4, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3           16             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPEN MUTATED        3      9     16
  SPEN WILD-TYPE     86    151    122
D1474V5, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            3             86
  CLUS_2            9            151
  CLUS_3           16            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPEN MUTATED       15      9      4
  SPEN WILD-TYPE    167    124     68
D1474V6, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1           15            167
  CLUS_2            9            124
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPEN MUTATED        3     10      9     12
  SPEN WILD-TYPE    109     86     83    174
D1474V7, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            3            109
  CLUS_2           10             86
  CLUS_3            9             83
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPEN MUTATED        2      4     11      1      3      2     11
  SPEN WILD-TYPE     58     46     38     39     60    123     88
D1474V8, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            2             58
  CLUS_2            4             46
  CLUS_3           11             38
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7           11             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPEN MUTATED       15      2      1     15
  SPEN WILD-TYPE    115     76     67    181
D1474V9, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1           15            115
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4           15            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SPEN MUTATED        2      5      2      4     12      0      2      4      2
  SPEN WILD-TYPE     38     57     26     76     57     48     41     24     72
D1474V10, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            2             26
  CLUS_4            4             76
  CLUS_5           12             57
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            4             24
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPEN MUTATED        2      0      0      3
  SPEN WILD-TYPE     31     31     27     16
D1474V11, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPEN MUTATED        4      0      1      0
  SPEN WILD-TYPE     50     10     23     22
D1474V12, multiclass
        clus
vv       SPEN MUTATED SPEN WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1475) Variable = IL1F8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F8 MUTATED        0      0      0      0
  IL1F8 WILD-TYPE     46     58     64     43
D1475V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1F8 MUTATED        0      0      0
  IL1F8 WILD-TYPE     51     83     77
D1475V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F8 MUTATED        2      0      1      0
  IL1F8 WILD-TYPE    176    183    100     20
D1475V3, multiclass
        clus
vv       IL1F8 MUTATED IL1F8 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1F8 MUTATED        0      1      2
  IL1F8 WILD-TYPE     87     79     98
D1475V4, multiclass
        clus
vv       IL1F8 MUTATED IL1F8 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1F8 MUTATED        0      0      2
  IL1F8 WILD-TYPE     89    160    136
D1475V5, multiclass
[1] "Remove cluster labels:" "IL1F8 MUTATED"         
clus
  IL1F8 MUTATED IL1F8 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5662      TCGA-A6-5664 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655      TCGA-AA-3664 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681      TCGA-AA-3688 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697      TCGA-AA-3710 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715      TCGA-AA-3811 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6928      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G5-6641 
"IL1F8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1F8 MUTATED        2      0      0
  IL1F8 WILD-TYPE    180    133     72
D1475V6, multiclass
[1] "Remove cluster labels:" "IL1F8 MUTATED"         
clus
  IL1F8 MUTATED IL1F8 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5662      TCGA-A6-5664 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655      TCGA-AA-3664 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681      TCGA-AA-3688 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697      TCGA-AA-3710 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715      TCGA-AA-3811 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848      TCGA-AA-3850 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856      TCGA-AA-3861 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950      TCGA-AA-3955 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E      TCGA-AA-A00F 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022      TCGA-AA-A024 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965      TCGA-AF-2689 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654      TCGA-AF-6136 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3578 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3609 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3742 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3885 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6928      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G5-6641 
"IL1F8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F8 MUTATED        0      2      1      0
  IL1F8 WILD-TYPE    112     94     91    186
D1475V7, multiclass
        clus
vv       IL1F8 MUTATED IL1F8 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL1F8 MUTATED        0      0      2      1      0      0      0
  IL1F8 WILD-TYPE     60     50     47     39     63    125     99
D1475V8, multiclass
        clus
vv       IL1F8 MUTATED IL1F8 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F8 MUTATED        3      0      0      0
  IL1F8 WILD-TYPE    127     78     68    196
D1475V9, multiclass
        clus
vv       IL1F8 MUTATED IL1F8 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL1F8 MUTATED        1      0      0      0      2      0      0      0
  IL1F8 WILD-TYPE     39     62     28     80     67     48     43     28
                 vv
clus              CLUS_9
  IL1F8 MUTATED        0
  IL1F8 WILD-TYPE     74
D1475V10, multiclass
        clus
vv       IL1F8 MUTATED IL1F8 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F8 MUTATED        0      0      0      1
  IL1F8 WILD-TYPE     33     31     27     18
D1475V11, multiclass
[1] "Remove cluster labels:" "IL1F8 MUTATED"         
clus
  IL1F8 MUTATED IL1F8 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6681      TCGA-DC-6682 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G5-6641 
"IL1F8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F8 MUTATED        1      0      0      0
  IL1F8 WILD-TYPE     53     10     24     22
D1475V12, multiclass
[1] "Remove cluster labels:" "IL1F8 MUTATED"         
clus
  IL1F8 MUTATED IL1F8 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6681      TCGA-DC-6682 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" "IL1F8 WILD-TYPE" 
     TCGA-G5-6641 
"IL1F8 WILD-TYPE" 

Clustering(1476) Variable = CCR8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR8 MUTATED        1      0      0      2
  CCR8 WILD-TYPE     45     58     64     41
D1476V1, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR8 MUTATED        3      0      0
  CCR8 WILD-TYPE     48     83     77
D1476V2, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR8 MUTATED        3      2      1      1
  CCR8 WILD-TYPE    175    181    100     19
D1476V3, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR8 MUTATED        1      2      1
  CCR8 WILD-TYPE     86     78     99
D1476V4, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR8 MUTATED        0      4      2
  CCR8 WILD-TYPE     89    156    136
D1476V5, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR8 MUTATED        4      2      0
  CCR8 WILD-TYPE    178    131     72
D1476V6, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR8 MUTATED        2      1      1      3
  CCR8 WILD-TYPE    110     95     91    183
D1476V7, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCR8 MUTATED        0      1      0      0      3      0      3
  CCR8 WILD-TYPE     60     49     49     40     60    125     96
D1476V8, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR8 MUTATED        0      3      1      2
  CCR8 WILD-TYPE    130     75     67    194
D1476V9, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CCR8 MUTATED        0      2      0      0      2      1      1      0      0
  CCR8 WILD-TYPE     40     60     28     80     67     47     42     28     74
D1476V10, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR8 MUTATED        1      2      0      0
  CCR8 WILD-TYPE     32     29     27     19
D1476V11, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR8 MUTATED        2      0      0      1
  CCR8 WILD-TYPE     52     10     24     21
D1476V12, multiclass
        clus
vv       CCR8 MUTATED CCR8 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1477) Variable = HSPBAP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPBAP1 MUTATED        0      0      0      1
  HSPBAP1 WILD-TYPE     46     58     64     42
D1477V1, multiclass
[1] "Remove cluster labels:" "HSPBAP1 MUTATED"       
clus
  HSPBAP1 MUTATED HSPBAP1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSPBAP1 MUTATED        1      0      0
  HSPBAP1 WILD-TYPE     50     83     77
D1477V2, multiclass
[1] "Remove cluster labels:" "HSPBAP1 MUTATED"       
clus
  HSPBAP1 MUTATED HSPBAP1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"HSPBAP1 WILD-TYPE" "HSPBAP1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPBAP1 MUTATED        5      2      1      0
  HSPBAP1 WILD-TYPE    173    181    100     20
D1477V3, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSPBAP1 MUTATED        1      1      5
  HSPBAP1 WILD-TYPE     86     79     95
D1477V4, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSPBAP1 MUTATED        1      2      4
  HSPBAP1 WILD-TYPE     88    158    134
D1477V5, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSPBAP1 MUTATED        5      2      0
  HSPBAP1 WILD-TYPE    177    131     72
D1477V6, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPBAP1 MUTATED        1      4      2      1
  HSPBAP1 WILD-TYPE    111     92     90    185
D1477V7, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSPBAP1 MUTATED        0      0      4      0      3      0      1
  HSPBAP1 WILD-TYPE     60     50     45     40     60    125     98
D1477V8, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPBAP1 MUTATED        5      2      0      0
  HSPBAP1 WILD-TYPE    125     76     68    196
D1477V9, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HSPBAP1 MUTATED        0      2      0      1      4      0      0      0
  HSPBAP1 WILD-TYPE     40     60     28     79     65     48     43     28
                   vv
clus                CLUS_9
  HSPBAP1 MUTATED        0
  HSPBAP1 WILD-TYPE     74
D1477V10, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPBAP1 MUTATED        0      2      0      2
  HSPBAP1 WILD-TYPE     33     29     27     17
D1477V11, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPBAP1 MUTATED        1      1      2      0
  HSPBAP1 WILD-TYPE     53      9     22     22
D1477V12, multiclass
        clus
vv       HSPBAP1 MUTATED HSPBAP1 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1478) Variable = XG MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XG MUTATED        0      0      0      0
  XG WILD-TYPE     46     58     64     43
D1478V1, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XG MUTATED        0      0      0
  XG WILD-TYPE     51     83     77
D1478V2, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XG MUTATED        4      2      1      0
  XG WILD-TYPE    174    181    100     20
D1478V3, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          4          174
  CLUS_2          2          181
  CLUS_3          1          100
  CLUS_4          0           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XG MUTATED        1      3      1
  XG WILD-TYPE     86     77     99
D1478V4, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          1           86
  CLUS_2          3           77
  CLUS_3          1           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XG MUTATED        3      2      2
  XG WILD-TYPE     86    158    136
D1478V5, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          3           86
  CLUS_2          2          158
  CLUS_3          2          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XG MUTATED        4      3      0
  XG WILD-TYPE    178    130     72
D1478V6, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          4          178
  CLUS_2          3          130
  CLUS_3          0           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XG MUTATED        3      2      2      0
  XG WILD-TYPE    109     94     90    186
D1478V7, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          3          109
  CLUS_2          2           94
  CLUS_3          2           90
  CLUS_4          0          186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XG MUTATED        2      2      1      0      2      0      0
  XG WILD-TYPE     58     48     48     40     61    125     99
D1478V8, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          2           58
  CLUS_2          2           48
  CLUS_3          1           48
  CLUS_4          0           40
  CLUS_5          2           61
  CLUS_6          0          125
  CLUS_7          0           99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XG MUTATED        4      1      0      2
  XG WILD-TYPE    126     77     68    194
D1478V9, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          4          126
  CLUS_2          1           77
  CLUS_3          0           68
  CLUS_4          2          194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  XG MUTATED        1      1      0      2      0      1      0      1      1
  XG WILD-TYPE     39     61     28     78     69     47     43     27     73
D1478V10, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          1           39
  CLUS_2          1           61
  CLUS_3          0           28
  CLUS_4          2           78
  CLUS_5          0           69
  CLUS_6          1           47
  CLUS_7          0           43
  CLUS_8          1           27
  CLUS_9          1           73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XG MUTATED        0      2      0      1
  XG WILD-TYPE     33     29     27     18
D1478V11, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          0           33
  CLUS_2          2           29
  CLUS_3          0           27
  CLUS_4          1           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XG MUTATED        1      1      0      1
  XG WILD-TYPE     53      9     24     21
D1478V12, multiclass
        clus
vv       XG MUTATED XG WILD-TYPE
  CLUS_1          1           53
  CLUS_2          1            9
  CLUS_3          0           24
  CLUS_4          1           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1479) Variable = UHRF1BP1L MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1L MUTATED        6      0      0      2
  UHRF1BP1L WILD-TYPE     40     58     64     41
D1479V1, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 6                  40
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 2                  41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1L MUTATED        7      1      0
  UHRF1BP1L WILD-TYPE     44     82     77
D1479V2, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 7                  44
  CLUS_2                 1                  82
  CLUS_3                 0                  77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1L MUTATED       14      3      3      1
  UHRF1BP1L WILD-TYPE    164    180     98     19
D1479V3, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                14                 164
  CLUS_2                 3                 180
  CLUS_3                 3                  98
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1L MUTATED        1      4      8
  UHRF1BP1L WILD-TYPE     86     76     92
D1479V4, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 1                  86
  CLUS_2                 4                  76
  CLUS_3                 8                  92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1L MUTATED        2      7      8
  UHRF1BP1L WILD-TYPE     87    153    130
D1479V5, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 2                  87
  CLUS_2                 7                 153
  CLUS_3                 8                 130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1L MUTATED        9      4      4
  UHRF1BP1L WILD-TYPE    173    129     68
D1479V6, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 9                 173
  CLUS_2                 4                 129
  CLUS_3                 4                  68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1L MUTATED        4      5      4      8
  UHRF1BP1L WILD-TYPE    108     91     88    178
D1479V7, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 4                 108
  CLUS_2                 5                  91
  CLUS_3                 4                  88
  CLUS_4                 8                 178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UHRF1BP1L MUTATED        4      1      5      1      2      1      7
  UHRF1BP1L WILD-TYPE     56     49     44     39     61    124     92
D1479V8, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 4                  56
  CLUS_2                 1                  49
  CLUS_3                 5                  44
  CLUS_4                 1                  39
  CLUS_5                 2                  61
  CLUS_6                 1                 124
  CLUS_7                 7                  92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1L MUTATED       10      2      1      7
  UHRF1BP1L WILD-TYPE    120     76     67    189
D1479V9, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                10                 120
  CLUS_2                 2                  76
  CLUS_3                 1                  67
  CLUS_4                 7                 189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UHRF1BP1L MUTATED        3      1      0      3      8      2      3      0
  UHRF1BP1L WILD-TYPE     37     61     28     77     61     46     40     28
                     vv
clus                  CLUS_9
  UHRF1BP1L MUTATED        0
  UHRF1BP1L WILD-TYPE     74
D1479V10, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 3                  37
  CLUS_2                 1                  61
  CLUS_3                 0                  28
  CLUS_4                 3                  77
  CLUS_5                 8                  61
  CLUS_6                 2                  46
  CLUS_7                 3                  40
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1L MUTATED        2      1      0      4
  UHRF1BP1L WILD-TYPE     31     30     27     15
D1479V11, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 2                  31
  CLUS_2                 1                  30
  CLUS_3                 0                  27
  CLUS_4                 4                  15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1L MUTATED        4      0      2      1
  UHRF1BP1L WILD-TYPE     50     10     22     21
D1479V12, multiclass
        clus
vv       UHRF1BP1L MUTATED UHRF1BP1L WILD-TYPE
  CLUS_1                 4                  50
  CLUS_2                 0                  10
  CLUS_3                 2                  22
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1480) Variable = CATSPER2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER2 MUTATED        1      0      0      1
  CATSPER2 WILD-TYPE     45     58     64     42
D1480V1, multiclass
[1] "Remove cluster labels:" "CATSPER2 MUTATED"      
clus
  CATSPER2 MUTATED CATSPER2 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3812 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER2 MUTATED        1      0      1
  CATSPER2 WILD-TYPE     50     83     76
D1480V2, multiclass
[1] "Remove cluster labels:" "CATSPER2 MUTATED"      
clus
  CATSPER2 MUTATED CATSPER2 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3812 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER2 MUTATED        6      0      0      1
  CATSPER2 WILD-TYPE    172    183    101     19
D1480V3, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER2 MUTATED        2      0      3
  CATSPER2 WILD-TYPE     85     80     97
D1480V4, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER2 MUTATED        0      4      3
  CATSPER2 WILD-TYPE     89    156    135
D1480V5, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                4                156
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER2 MUTATED        2      4      1
  CATSPER2 WILD-TYPE    180    129     71
D1480V6, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER2 MUTATED        0      2      2      3
  CATSPER2 WILD-TYPE    112     94     90    183
D1480V7, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CATSPER2 MUTATED        2      1      1      0      1      0      2
  CATSPER2 WILD-TYPE     58     49     48     40     62    125     97
D1480V8, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER2 MUTATED        1      1      1      4
  CATSPER2 WILD-TYPE    129     77     67    192
D1480V9, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CATSPER2 MUTATED        0      1      0      1      3      0      0      0
  CATSPER2 WILD-TYPE     40     61     28     79     66     48     43     28
                    vv
clus                 CLUS_9
  CATSPER2 MUTATED        2
  CATSPER2 WILD-TYPE     72
D1480V10, multiclass
        clus
vv       CATSPER2 MUTATED CATSPER2 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER2 MUTATED        0      0      1      1
  CATSPER2 WILD-TYPE     33     31     26     18
D1480V11, multiclass
[1] "Remove cluster labels:" "CATSPER2 MUTATED"      
clus
  CATSPER2 MUTATED CATSPER2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AY-6196 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER2 MUTATED        0      0      2      0
  CATSPER2 WILD-TYPE     54     10     22     22
D1480V12, multiclass
[1] "Remove cluster labels:" "CATSPER2 MUTATED"      
clus
  CATSPER2 MUTATED CATSPER2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AY-6196 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" "CATSPER2 WILD-TYPE" 

Clustering(1481) Variable = PPP2R5E MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5E MUTATED        0      0      0      2
  PPP2R5E WILD-TYPE     46     58     64     41
D1481V1, multiclass
[1] "Remove cluster labels:" "PPP2R5E MUTATED"       
clus
  PPP2R5E MUTATED PPP2R5E WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AY-4071 
"PPP2R5E WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R5E MUTATED        2      0      0
  PPP2R5E WILD-TYPE     49     83     77
D1481V2, multiclass
[1] "Remove cluster labels:" "PPP2R5E MUTATED"       
clus
  PPP2R5E MUTATED PPP2R5E WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" "PPP2R5E WILD-TYPE" 
       TCGA-AY-4071 
"PPP2R5E WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5E MUTATED        7      0      1      0
  PPP2R5E WILD-TYPE    171    183    100     20
D1481V3, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               7               171
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R5E MUTATED        1      0      5
  PPP2R5E WILD-TYPE     86     80     95
D1481V4, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R5E MUTATED        1      1      5
  PPP2R5E WILD-TYPE     88    159    133
D1481V5, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R5E MUTATED        6      1      0
  PPP2R5E WILD-TYPE    176    132     72
D1481V6, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               6               176
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5E MUTATED        0      3      3      2
  PPP2R5E WILD-TYPE    112     93     89    184
D1481V7, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPP2R5E MUTATED        0      1      3      0      1      0      3
  PPP2R5E WILD-TYPE     60     49     46     40     62    125     96
D1481V8, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5E MUTATED        3      2      0      2
  PPP2R5E WILD-TYPE    127     76     68    194
D1481V9, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPP2R5E MUTATED        1      2      0      0      4      0      0      0
  PPP2R5E WILD-TYPE     39     60     28     80     65     48     43     28
                   vv
clus                CLUS_9
  PPP2R5E MUTATED        0
  PPP2R5E WILD-TYPE     74
D1481V10, multiclass
        clus
vv       PPP2R5E MUTATED PPP2R5E WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5E MUTATED        0      0      0      0
  PPP2R5E WILD-TYPE     33     31     27     19
D1481V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R5E MUTATED        0      0      0      0
  PPP2R5E WILD-TYPE     54     10     24     22
D1481V12, multiclass

Clustering(1482) Variable = SPOPL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOPL MUTATED        1      1      0      0
  SPOPL WILD-TYPE     45     57     64     43
D1482V1, multiclass
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3667 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AY-4071 
"SPOPL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPOPL MUTATED        1      0      1
  SPOPL WILD-TYPE     50     83     76
D1482V2, multiclass
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3667 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696      TCGA-AA-3710 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AY-4071 
"SPOPL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOPL MUTATED        4      4      1      1
  SPOPL WILD-TYPE    174    179    100     19
D1482V3, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             4             174
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPOPL MUTATED        2      3      3
  SPOPL WILD-TYPE     85     77     97
D1482V4, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPOPL MUTATED        0      4      5
  SPOPL WILD-TYPE     89    156    133
D1482V5, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPOPL MUTATED        3      5      1
  SPOPL WILD-TYPE    179    128     71
D1482V6, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOPL MUTATED        4      2      2      2
  SPOPL WILD-TYPE    108     94     90    184
D1482V7, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPOPL MUTATED        3      2      1      0      2      0      2
  SPOPL WILD-TYPE     57     48     48     40     61    125     97
D1482V8, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOPL MUTATED        3      3      1      3
  SPOPL WILD-TYPE    127     75     67    193
D1482V9, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPOPL MUTATED        2      2      0      0      1      1      2      1
  SPOPL WILD-TYPE     38     60     28     80     68     47     41     27
                 vv
clus              CLUS_9
  SPOPL MUTATED        1
  SPOPL WILD-TYPE     73
D1482V10, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOPL MUTATED        2      0      0      0
  SPOPL WILD-TYPE     31     31     27     19
D1482V11, multiclass
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6805      TCGA-F4-6807 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOPL MUTATED        2      0      0      0
  SPOPL WILD-TYPE     52     10     24     22
D1482V12, multiclass
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6805      TCGA-F4-6807 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 

Clustering(1483) Variable = FCRL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCRL4 MUTATED        0      1      0      2
  FCRL4 WILD-TYPE     46     57     64     41
D1483V1, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCRL4 MUTATED        1      1      1
  FCRL4 WILD-TYPE     50     82     76
D1483V2, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCRL4 MUTATED        7      5      1      0
  FCRL4 WILD-TYPE    171    178    100     20
D1483V3, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             5             178
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCRL4 MUTATED        4      1      4
  FCRL4 WILD-TYPE     83     79     96
D1483V4, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCRL4 MUTATED        1      7      3
  FCRL4 WILD-TYPE     88    153    135
D1483V5, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCRL4 MUTATED        3      6      2
  FCRL4 WILD-TYPE    179    127     70
D1483V6, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCRL4 MUTATED        0      5      4      4
  FCRL4 WILD-TYPE    112     91     88    182
D1483V7, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FCRL4 MUTATED        1      3      3      0      2      2      2
  FCRL4 WILD-TYPE     59     47     46     40     61    123     97
D1483V8, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCRL4 MUTATED        5      2      1      5
  FCRL4 WILD-TYPE    125     76     67    191
D1483V9, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FCRL4 MUTATED        0      2      0      4      4      1      1      0
  FCRL4 WILD-TYPE     40     60     28     76     65     47     42     28
                 vv
clus              CLUS_9
  FCRL4 MUTATED        1
  FCRL4 WILD-TYPE     73
D1483V10, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCRL4 MUTATED        1      1      1      3
  FCRL4 WILD-TYPE     32     30     26     16
D1483V11, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCRL4 MUTATED        2      0      4      0
  FCRL4 WILD-TYPE     52     10     20     22
D1483V12, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1484) Variable = THRAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        2      0      0      3
  THRAP3 WILD-TYPE     44     58     64     40
D1484V1, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        4      0      1
  THRAP3 WILD-TYPE     47     83     76
D1484V2, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED       11      0      0      0
  THRAP3 WILD-TYPE    167    183    101     20
D1484V3, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        3      1      3
  THRAP3 WILD-TYPE     84     79     97
D1484V4, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        2      1      8
  THRAP3 WILD-TYPE     87    159    130
D1484V5, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1              159
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THRAP3 MUTATED        9      1      1
  THRAP3 WILD-TYPE    173    132     71
D1484V6, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        1      3      3      5
  THRAP3 WILD-TYPE    111     93     89    181
D1484V7, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  THRAP3 MUTATED        1      1      4      0      2      0      4
  THRAP3 WILD-TYPE     59     49     45     40     61    125     95
D1484V8, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        3      3      0      5
  THRAP3 WILD-TYPE    127     75     68    191
D1484V9, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  THRAP3 MUTATED        1      2      0      0      7      1      0      0
  THRAP3 WILD-TYPE     39     60     28     80     62     47     43     28
                  vv
clus               CLUS_9
  THRAP3 MUTATED        0
  THRAP3 WILD-TYPE     74
D1484V10, multiclass
        clus
vv       THRAP3 MUTATED THRAP3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        0      1      0      0
  THRAP3 WILD-TYPE     33     30     27     19
D1484V11, multiclass
[1] "Remove cluster labels:" "THRAP3 MUTATED"        
clus
  THRAP3 MUTATED THRAP3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-DC-5337       TCGA-DC-5869 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-G5-6641 
"THRAP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THRAP3 MUTATED        0      0      0      1
  THRAP3 WILD-TYPE     54     10     24     21
D1484V12, multiclass
[1] "Remove cluster labels:" "THRAP3 MUTATED"        
clus
  THRAP3 MUTATED THRAP3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-DC-5337       TCGA-DC-5869 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" "THRAP3 WILD-TYPE" 
      TCGA-G5-6641 
"THRAP3 WILD-TYPE" 

Clustering(1485) Variable = ATP2B4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        3      0      0      3
  ATP2B4 WILD-TYPE     43     58     64     40
D1485V1, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B4 MUTATED        2      2      2
  ATP2B4 WILD-TYPE     49     81     75
D1485V2, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED       13      1      6      1
  ATP2B4 WILD-TYPE    165    182     95     19
D1485V3, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              1              182
  CLUS_3              6               95
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B4 MUTATED        5      6      4
  ATP2B4 WILD-TYPE     82     74     96
D1485V4, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              6               74
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B4 MUTATED        1      8      7
  ATP2B4 WILD-TYPE     88    152    131
D1485V5, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              8              152
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B4 MUTATED        7      7      2
  ATP2B4 WILD-TYPE    175    126     70
D1485V6, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        7      6      3      5
  ATP2B4 WILD-TYPE    105     90     89    181
D1485V7, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              7              105
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2B4 MUTATED        5      1      5      2      3      1      4
  ATP2B4 WILD-TYPE     55     49     44     38     60    124     95
D1485V8, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        9      3      2      7
  ATP2B4 WILD-TYPE    121     75     66    189
D1485V9, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP2B4 MUTATED        2      4      1      3      5      4      1      0
  ATP2B4 WILD-TYPE     38     58     27     77     64     44     42     28
                  vv
clus               CLUS_9
  ATP2B4 MUTATED        1
  ATP2B4 WILD-TYPE     73
D1485V10, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              5               64
  CLUS_6              4               44
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        1      2      1      2
  ATP2B4 WILD-TYPE     32     29     26     17
D1485V11, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        3      0      2      1
  ATP2B4 WILD-TYPE     51     10     22     21
D1485V12, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1486) Variable = PCDHGA8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA8 MUTATED        2      0      0      2
  PCDHGA8 WILD-TYPE     44     58     64     41
D1486V1, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA8 MUTATED        2      1      1
  PCDHGA8 WILD-TYPE     49     82     76
D1486V2, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA8 MUTATED       16      2      0      0
  PCDHGA8 WILD-TYPE    162    181    101     20
D1486V3, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1              16               162
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA8 MUTATED        5      2      7
  PCDHGA8 WILD-TYPE     82     78     93
D1486V4, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA8 MUTATED        2      7      8
  PCDHGA8 WILD-TYPE     87    153    130
D1486V5, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               7               153
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA8 MUTATED        6      7      4
  PCDHGA8 WILD-TYPE    176    126     68
D1486V6, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               7               126
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA8 MUTATED        4      7      2      5
  PCDHGA8 WILD-TYPE    108     89     90    181
D1486V7, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               7                89
  CLUS_3               2                90
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDHGA8 MUTATED        4      3      6      0      1      0      4
  PCDHGA8 WILD-TYPE     56     47     43     40     62    125     95
D1486V8, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               3                47
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA8 MUTATED        9      2      0      7
  PCDHGA8 WILD-TYPE    121     76     68    189
D1486V9, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDHGA8 MUTATED        0      2      3      0      7      3      0      1
  PCDHGA8 WILD-TYPE     40     60     25     80     62     45     43     27
                   vv
clus                CLUS_9
  PCDHGA8 MUTATED        2
  PCDHGA8 WILD-TYPE     72
D1486V10, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               3                25
  CLUS_4               0                80
  CLUS_5               7                62
  CLUS_6               3                45
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA8 MUTATED        2      0      1      3
  PCDHGA8 WILD-TYPE     31     31     26     16
D1486V11, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA8 MUTATED        1      0      3      2
  PCDHGA8 WILD-TYPE     53     10     21     20
D1486V12, multiclass
        clus
vv       PCDHGA8 MUTATED PCDHGA8 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1487) Variable = TRIM46 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        2      0      0      0
  TRIM46 WILD-TYPE     44     58     64     43
D1487V1, multiclass
[1] "Remove cluster labels:" "TRIM46 MUTATED"        
clus
  TRIM46 MUTATED TRIM46 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846       TCGA-AA-3848 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AY-4071 
"TRIM46 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED        2      0      0
  TRIM46 WILD-TYPE     49     83     77
D1487V2, multiclass
[1] "Remove cluster labels:" "TRIM46 MUTATED"        
clus
  TRIM46 MUTATED TRIM46 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846       TCGA-AA-3848 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" "TRIM46 WILD-TYPE" 
      TCGA-AY-4071 
"TRIM46 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED       13      0      1      1
  TRIM46 WILD-TYPE    165    183    100     19
D1487V3, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED        6      0      6
  TRIM46 WILD-TYPE     81     80     94
D1487V4, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED        2      6      6
  TRIM46 WILD-TYPE     87    154    132
D1487V5, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED        7      5      2
  TRIM46 WILD-TYPE    175    128     70
D1487V6, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        1      8      3      3
  TRIM46 WILD-TYPE    111     88     89    183
D1487V7, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              8               88
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM46 MUTATED        0      2      7      1      1      0      4
  TRIM46 WILD-TYPE     60     48     42     39     62    125     95
D1487V8, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        6      3      1      5
  TRIM46 WILD-TYPE    124     75     67    191
D1487V9, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM46 MUTATED        3      3      1      1      6      0      0      0
  TRIM46 WILD-TYPE     37     59     27     79     63     48     43     28
                  vv
clus               CLUS_9
  TRIM46 MUTATED        1
  TRIM46 WILD-TYPE     73
D1487V10, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        1      0      0      3
  TRIM46 WILD-TYPE     32     31     27     16
D1487V11, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        3      0      1      0
  TRIM46 WILD-TYPE     51     10     23     22
D1487V12, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1488) Variable = TNKS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS MUTATED        2      0      1      1
  TNKS WILD-TYPE     44     58     63     42
D1488V1, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNKS MUTATED        3      0      1
  TNKS WILD-TYPE     48     83     76
D1488V2, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS MUTATED        7      1      1      0
  TNKS WILD-TYPE    171    182    100     20
D1488V3, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNKS MUTATED        4      0      2
  TNKS WILD-TYPE     83     80     98
D1488V4, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNKS MUTATED        2      1      5
  TNKS WILD-TYPE     87    159    133
D1488V5, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNKS MUTATED        5      2      1
  TNKS WILD-TYPE    177    131     71
D1488V6, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS MUTATED        0      4      4      2
  TNKS WILD-TYPE    112     92     88    184
D1488V7, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNKS MUTATED        0      2      4      0      0      1      3
  TNKS WILD-TYPE     60     48     45     40     63    124     96
D1488V8, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS MUTATED        0      2      0      8
  TNKS WILD-TYPE    130     76     68    188
D1488V9, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            0            130
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TNKS MUTATED        0      2      0      1      4      0      0      1      2
  TNKS WILD-TYPE     40     60     28     79     65     48     43     27     72
D1488V10, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS MUTATED        1      0      0      2
  TNKS WILD-TYPE     32     31     27     17
D1488V11, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS MUTATED        2      0      1      0
  TNKS WILD-TYPE     52     10     23     22
D1488V12, multiclass
        clus
vv       TNKS MUTATED TNKS WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1489) Variable = ADAM20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM20 MUTATED        0      0      0      1
  ADAM20 WILD-TYPE     46     58     64     42
D1489V1, multiclass
[1] "Remove cluster labels:" "ADAM20 MUTATED"        
clus
  ADAM20 MUTATED ADAM20 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A00C 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM20 MUTATED        0      0      1
  ADAM20 WILD-TYPE     51     83     76
D1489V2, multiclass
[1] "Remove cluster labels:" "ADAM20 MUTATED"        
clus
  ADAM20 MUTATED ADAM20 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A00C 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"ADAM20 WILD-TYPE" "ADAM20 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM20 MUTATED        2      1      3      0
  ADAM20 WILD-TYPE    176    182     98     20
D1489V3, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM20 MUTATED        2      1      2
  ADAM20 WILD-TYPE     85     79     98
D1489V4, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM20 MUTATED        3      1      2
  ADAM20 WILD-TYPE     86    159    136
D1489V5, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM20 MUTATED        3      1      2
  ADAM20 WILD-TYPE    179    132     70
D1489V6, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM20 MUTATED        1      2      3      0
  ADAM20 WILD-TYPE    111     94     89    186
D1489V7, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM20 MUTATED        0      1      1      2      1      0      1
  ADAM20 WILD-TYPE     60     49     48     38     62    125     98
D1489V8, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM20 MUTATED        1      1      2      2
  ADAM20 WILD-TYPE    129     77     66    194
D1489V9, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM20 MUTATED        0      1      1      1      1      0      2      0
  ADAM20 WILD-TYPE     40     61     27     79     68     48     41     28
                  vv
clus               CLUS_9
  ADAM20 MUTATED        0
  ADAM20 WILD-TYPE     74
D1489V10, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM20 MUTATED        2      1      0      1
  ADAM20 WILD-TYPE     31     30     27     18
D1489V11, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM20 MUTATED        1      0      0      3
  ADAM20 WILD-TYPE     53     10     24     19
D1489V12, multiclass
        clus
vv       ADAM20 MUTATED ADAM20 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1490) Variable = CDK5RAP2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK5RAP2 MUTATED        1      0      0      3
  CDK5RAP2 WILD-TYPE     45     58     64     40
D1490V1, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDK5RAP2 MUTATED        2      1      1
  CDK5RAP2 WILD-TYPE     49     82     76
D1490V2, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK5RAP2 MUTATED       20      3      2      0
  CDK5RAP2 WILD-TYPE    158    180     99     20
D1490V3, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1               20                158
  CLUS_2                3                180
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDK5RAP2 MUTATED        7      3     10
  CDK5RAP2 WILD-TYPE     80     77     90
D1490V4, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                3                 77
  CLUS_3               10                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDK5RAP2 MUTATED        2     10     12
  CDK5RAP2 WILD-TYPE     87    150    126
D1490V5, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2               10                150
  CLUS_3               12                126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDK5RAP2 MUTATED       14      9      1
  CDK5RAP2 WILD-TYPE    168    124     71
D1490V6, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1               14                168
  CLUS_2                9                124
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK5RAP2 MUTATED        4      8      7      6
  CDK5RAP2 WILD-TYPE    108     88     85    180
D1490V7, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                4                108
  CLUS_2                8                 88
  CLUS_3                7                 85
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDK5RAP2 MUTATED        3      3     10      0      4      0      5
  CDK5RAP2 WILD-TYPE     57     47     39     40     59    125     94
D1490V8, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                3                 47
  CLUS_3               10                 39
  CLUS_4                0                 40
  CLUS_5                4                 59
  CLUS_6                0                125
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK5RAP2 MUTATED       12      4      1      7
  CDK5RAP2 WILD-TYPE    118     74     67    189
D1490V9, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1               12                118
  CLUS_2                4                 74
  CLUS_3                1                 67
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDK5RAP2 MUTATED        1      7      4      2      5      0      3      0
  CDK5RAP2 WILD-TYPE     39     55     24     78     64     48     40     28
                    vv
clus                 CLUS_9
  CDK5RAP2 MUTATED        2
  CDK5RAP2 WILD-TYPE     72
D1490V10, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                7                 55
  CLUS_3                4                 24
  CLUS_4                2                 78
  CLUS_5                5                 64
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK5RAP2 MUTATED        1      0      0      4
  CDK5RAP2 WILD-TYPE     32     31     27     15
D1490V11, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                4                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK5RAP2 MUTATED        3      0      2      0
  CDK5RAP2 WILD-TYPE     51     10     22     22
D1490V12, multiclass
        clus
vv       CDK5RAP2 MUTATED CDK5RAP2 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1491) Variable = NXPH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXPH1 MUTATED        0      0      0      3
  NXPH1 WILD-TYPE     46     58     64     40
D1491V1, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NXPH1 MUTATED        1      1      1
  NXPH1 WILD-TYPE     50     82     76
D1491V2, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXPH1 MUTATED        5      1      2      0
  NXPH1 WILD-TYPE    173    182     99     20
D1491V3, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NXPH1 MUTATED        4      0      2
  NXPH1 WILD-TYPE     83     80     98
D1491V4, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NXPH1 MUTATED        2      3      4
  NXPH1 WILD-TYPE     87    157    134
D1491V5, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NXPH1 MUTATED        6      1      2
  NXPH1 WILD-TYPE    176    132     70
D1491V6, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXPH1 MUTATED        1      4      2      2
  NXPH1 WILD-TYPE    111     92     90    184
D1491V7, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NXPH1 MUTATED        0      2      2      2      0      0      3
  NXPH1 WILD-TYPE     60     48     47     38     63    125     96
D1491V8, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXPH1 MUTATED        3      2      1      2
  NXPH1 WILD-TYPE    127     76     67    194
D1491V9, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NXPH1 MUTATED        2      1      2      0      1      1      1      0
  NXPH1 WILD-TYPE     38     61     26     80     68     47     42     28
                 vv
clus              CLUS_9
  NXPH1 MUTATED        0
  NXPH1 WILD-TYPE     74
D1491V10, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXPH1 MUTATED        1      1      1      2
  NXPH1 WILD-TYPE     32     30     26     17
D1491V11, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NXPH1 MUTATED        3      0      1      1
  NXPH1 WILD-TYPE     51     10     23     21
D1491V12, multiclass
        clus
vv       NXPH1 MUTATED NXPH1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1492) Variable = ATP10B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP10B MUTATED        2      0      0      1
  ATP10B WILD-TYPE     44     58     64     42
D1492V1, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP10B MUTATED        2      0      1
  ATP10B WILD-TYPE     49     83     76
D1492V2, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP10B MUTATED       11      4      2      0
  ATP10B WILD-TYPE    167    179     99     20
D1492V3, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1             11              167
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP10B MUTATED        5      3      6
  ATP10B WILD-TYPE     82     77     94
D1492V4, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP10B MUTATED        3      5      7
  ATP10B WILD-TYPE     86    155    131
D1492V5, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP10B MUTATED        8      5      2
  ATP10B WILD-TYPE    174    128     70
D1492V6, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              8              174
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP10B MUTATED        4      6      4      3
  ATP10B WILD-TYPE    108     90     88    183
D1492V7, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              4              108
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP10B MUTATED        2      3      5      0      4      0      3
  ATP10B WILD-TYPE     58     47     44     40     59    125     96
D1492V8, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              4               59
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP10B MUTATED        7      6      1      3
  ATP10B WILD-TYPE    123     72     67    193
D1492V9, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              7              123
  CLUS_2              6               72
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP10B MUTATED        2      5      1      2      4      0      2      1
  ATP10B WILD-TYPE     38     57     27     78     65     48     41     27
                  vv
clus               CLUS_9
  ATP10B MUTATED        0
  ATP10B WILD-TYPE     74
D1492V10, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP10B MUTATED        2      0      1      2
  ATP10B WILD-TYPE     31     31     26     17
D1492V11, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP10B MUTATED        3      0      2      0
  ATP10B WILD-TYPE     51     10     22     22
D1492V12, multiclass
        clus
vv       ATP10B MUTATED ATP10B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1493) Variable = ERGIC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERGIC1 MUTATED        0      0      0      0
  ERGIC1 WILD-TYPE     46     58     64     43
D1493V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERGIC1 MUTATED        0      0      0
  ERGIC1 WILD-TYPE     51     83     77
D1493V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERGIC1 MUTATED        2      2      1      0
  ERGIC1 WILD-TYPE    176    181    100     20
D1493V3, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERGIC1 MUTATED        1      1      3
  ERGIC1 WILD-TYPE     86     79     97
D1493V4, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERGIC1 MUTATED        0      1      4
  ERGIC1 WILD-TYPE     89    159    134
D1493V5, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ERGIC1 MUTATED        4      1      0
  ERGIC1 WILD-TYPE    178    132     72
D1493V6, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERGIC1 MUTATED        1      1      3      0
  ERGIC1 WILD-TYPE    111     95     89    186
D1493V7, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERGIC1 MUTATED        2      1      2      0      0      0      0
  ERGIC1 WILD-TYPE     58     49     47     40     63    125     99
D1493V8, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERGIC1 MUTATED        4      0      0      1
  ERGIC1 WILD-TYPE    126     78     68    195
D1493V9, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERGIC1 MUTATED        1      0      0      1      1      0      2      0
  ERGIC1 WILD-TYPE     39     62     28     79     68     48     41     28
                  vv
clus               CLUS_9
  ERGIC1 MUTATED        0
  ERGIC1 WILD-TYPE     74
D1493V10, multiclass
        clus
vv       ERGIC1 MUTATED ERGIC1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERGIC1 MUTATED        1      0      0      1
  ERGIC1 WILD-TYPE     32     31     27     18
D1493V11, multiclass
[1] "Remove cluster labels:" "ERGIC1 MUTATED"        
clus
  ERGIC1 MUTATED ERGIC1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERGIC1 MUTATED        1      0      1      0
  ERGIC1 WILD-TYPE     53     10     23     22
D1493V12, multiclass
[1] "Remove cluster labels:" "ERGIC1 MUTATED"        
clus
  ERGIC1 MUTATED ERGIC1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" "ERGIC1 WILD-TYPE" 

Clustering(1494) Variable = IVD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVD MUTATED        0      0      0      0
  IVD WILD-TYPE     46     58     64     43
D1494V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVD MUTATED        0      0      0
  IVD WILD-TYPE     51     83     77
D1494V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVD MUTATED        4      0      1      1
  IVD WILD-TYPE    174    183    100     19
D1494V3, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           4           174
  CLUS_2           0           183
  CLUS_3           1           100
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVD MUTATED        4      1      1
  IVD WILD-TYPE     83     79     99
D1494V4, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           4            83
  CLUS_2           1            79
  CLUS_3           1            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVD MUTATED        0      1      5
  IVD WILD-TYPE     89    159    133
D1494V5, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           0            89
  CLUS_2           1           159
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IVD MUTATED        5      0      1
  IVD WILD-TYPE    177    133     71
D1494V6, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           5           177
  CLUS_2           0           133
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVD MUTATED        1      1      4      0
  IVD WILD-TYPE    111     95     88    186
D1494V7, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           1           111
  CLUS_2           1            95
  CLUS_3           4            88
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IVD MUTATED        1      0      3      2      0      0      0
  IVD WILD-TYPE     59     50     46     38     63    125     99
D1494V8, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           3            46
  CLUS_4           2            38
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVD MUTATED        3      3      0      0
  IVD WILD-TYPE    127     75     68    196
D1494V9, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           3           127
  CLUS_2           3            75
  CLUS_3           0            68
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IVD MUTATED        2      3      0      0      0      1      0      0      0
  IVD WILD-TYPE     38     59     28     80     69     47     43     28     74
D1494V10, multiclass
        clus
vv       IVD MUTATED IVD WILD-TYPE
  CLUS_1           2            38
  CLUS_2           3            59
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           0            69
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVD MUTATED        1      0      0      1
  IVD WILD-TYPE     32     31     27     18
D1494V11, multiclass
[1] "Remove cluster labels:" "IVD MUTATED"           
clus
  IVD MUTATED IVD WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6782 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IVD MUTATED        2      0      0      0
  IVD WILD-TYPE     52     10     24     22
D1494V12, multiclass
[1] "Remove cluster labels:" "IVD MUTATED"           
clus
  IVD MUTATED IVD WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6782 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IVD WILD-TYPE" "IVD WILD-TYPE" "IVD WILD-TYPE" 

Clustering(1495) Variable = YTHDF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF2 MUTATED        0      0      0      2
  YTHDF2 WILD-TYPE     46     58     64     41
D1495V1, multiclass
[1] "Remove cluster labels:" "YTHDF2 MUTATED"        
clus
  YTHDF2 MUTATED YTHDF2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AY-4071 
"YTHDF2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  YTHDF2 MUTATED        0      1      1
  YTHDF2 WILD-TYPE     51     82     76
D1495V2, multiclass
[1] "Remove cluster labels:" "YTHDF2 MUTATED"        
clus
  YTHDF2 MUTATED YTHDF2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" "YTHDF2 WILD-TYPE" 
      TCGA-AY-4071 
"YTHDF2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF2 MUTATED       11      0      1      0
  YTHDF2 WILD-TYPE    167    183    100     20
D1495V3, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  YTHDF2 MUTATED        6      0      4
  YTHDF2 WILD-TYPE     81     80     96
D1495V4, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  YTHDF2 MUTATED        0      4      7
  YTHDF2 WILD-TYPE     89    156    131
D1495V5, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  YTHDF2 MUTATED        6      4      1
  YTHDF2 WILD-TYPE    176    129     71
D1495V6, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF2 MUTATED        2      2      6      2
  YTHDF2 WILD-TYPE    110     94     86    184
D1495V7, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              6               86
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YTHDF2 MUTATED        1      2      7      0      1      0      1
  YTHDF2 WILD-TYPE     59     48     42     40     62    125     98
D1495V8, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF2 MUTATED        6      4      0      2
  YTHDF2 WILD-TYPE    124     74     68    194
D1495V9, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  YTHDF2 MUTATED        2      6      1      0      2      1      0      0
  YTHDF2 WILD-TYPE     38     56     27     80     67     47     43     28
                  vv
clus               CLUS_9
  YTHDF2 MUTATED        0
  YTHDF2 WILD-TYPE     74
D1495V10, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              6               56
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF2 MUTATED        2      0      0      3
  YTHDF2 WILD-TYPE     31     31     27     16
D1495V11, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YTHDF2 MUTATED        4      0      0      1
  YTHDF2 WILD-TYPE     50     10     24     21
D1495V12, multiclass
        clus
vv       YTHDF2 MUTATED YTHDF2 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1496) Variable = KCNN4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN4 MUTATED        0      0      0      0
  KCNN4 WILD-TYPE     46     58     64     43
D1496V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNN4 MUTATED        0      0      0
  KCNN4 WILD-TYPE     51     83     77
D1496V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN4 MUTATED        2      2      2      1
  KCNN4 WILD-TYPE    176    181     99     19
D1496V3, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNN4 MUTATED        3      0      4
  KCNN4 WILD-TYPE     84     80     96
D1496V4, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNN4 MUTATED        0      2      3
  KCNN4 WILD-TYPE     89    158    135
D1496V5, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNN4 MUTATED        3      0      2
  KCNN4 WILD-TYPE    179    133     70
D1496V6, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN4 MUTATED        1      3      2      1
  KCNN4 WILD-TYPE    111     93     90    185
D1496V7, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNN4 MUTATED        0      3      0      1      2      1      0
  KCNN4 WILD-TYPE     60     47     49     39     61    124     99
D1496V8, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN4 MUTATED        5      1      0      1
  KCNN4 WILD-TYPE    125     77     68    195
D1496V9, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCNN4 MUTATED        4      0      2      1      0      0      0      0
  KCNN4 WILD-TYPE     36     62     26     79     69     48     43     28
                 vv
clus              CLUS_9
  KCNN4 MUTATED        0
  KCNN4 WILD-TYPE     74
D1496V10, multiclass
        clus
vv       KCNN4 MUTATED KCNN4 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN4 MUTATED        2      0      0      0
  KCNN4 WILD-TYPE     31     31     27     19
D1496V11, multiclass
[1] "Remove cluster labels:" "KCNN4 MUTATED"         
clus
  KCNN4 MUTATED KCNN4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN4 MUTATED        2      0      0      0
  KCNN4 WILD-TYPE     52     10     24     22
D1496V12, multiclass
[1] "Remove cluster labels:" "KCNN4 MUTATED"         
clus
  KCNN4 MUTATED KCNN4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" "KCNN4 WILD-TYPE" 

Clustering(1497) Variable = C20ORF177 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF177 MUTATED        0      0      0      3
  C20ORF177 WILD-TYPE     46     58     64     40
D1497V1, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 0                  46
  CLUS_2                 0                  58
  CLUS_3                 0                  64
  CLUS_4                 3                  40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF177 MUTATED        1      0      2
  C20ORF177 WILD-TYPE     50     83     75
D1497V2, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 1                  50
  CLUS_2                 0                  83
  CLUS_3                 2                  75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF177 MUTATED        8      3      1      1
  C20ORF177 WILD-TYPE    170    180    100     19
D1497V3, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 8                 170
  CLUS_2                 3                 180
  CLUS_3                 1                 100
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF177 MUTATED        6      1      2
  C20ORF177 WILD-TYPE     81     79     98
D1497V4, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 6                  81
  CLUS_2                 1                  79
  CLUS_3                 2                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF177 MUTATED        0      4      8
  C20ORF177 WILD-TYPE     89    156    130
D1497V5, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 4                 156
  CLUS_3                 8                 130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF177 MUTATED        8      4      0
  C20ORF177 WILD-TYPE    174    129     72
D1497V6, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 8                 174
  CLUS_2                 4                 129
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF177 MUTATED        1      2      6      4
  C20ORF177 WILD-TYPE    111     94     86    182
D1497V7, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 2                  94
  CLUS_3                 6                  86
  CLUS_4                 4                 182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C20ORF177 MUTATED        3      1      2      1      3      0      3
  C20ORF177 WILD-TYPE     57     49     47     39     60    125     96
D1497V8, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 3                  57
  CLUS_2                 1                  49
  CLUS_3                 2                  47
  CLUS_4                 1                  39
  CLUS_5                 3                  60
  CLUS_6                 0                 125
  CLUS_7                 3                  96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF177 MUTATED        3      4      2      3
  C20ORF177 WILD-TYPE    127     74     66    193
D1497V9, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 3                 127
  CLUS_2                 4                  74
  CLUS_3                 2                  66
  CLUS_4                 3                 193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C20ORF177 MUTATED        0      5      2      1      3      0      1      0
  C20ORF177 WILD-TYPE     40     57     26     79     66     48     42     28
                     vv
clus                  CLUS_9
  C20ORF177 MUTATED        0
  C20ORF177 WILD-TYPE     74
D1497V10, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 5                  57
  CLUS_3                 2                  26
  CLUS_4                 1                  79
  CLUS_5                 3                  66
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF177 MUTATED        2      1      1      2
  C20ORF177 WILD-TYPE     31     30     26     17
D1497V11, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 2                  31
  CLUS_2                 1                  30
  CLUS_3                 1                  26
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF177 MUTATED        3      1      1      1
  C20ORF177 WILD-TYPE     51      9     23     21
D1497V12, multiclass
        clus
vv       C20ORF177 MUTATED C20ORF177 WILD-TYPE
  CLUS_1                 3                  51
  CLUS_2                 1                   9
  CLUS_3                 1                  23
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1498) Variable = RBL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL1 MUTATED        1      1      0      2
  RBL1 WILD-TYPE     45     57     64     41
D1498V1, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL1 MUTATED        2      1      1
  RBL1 WILD-TYPE     49     82     76
D1498V2, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL1 MUTATED       12      5      1      1
  RBL1 WILD-TYPE    166    178    100     19
D1498V3, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL1 MUTATED        3      4      8
  RBL1 WILD-TYPE     84     76     92
D1498V4, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            4             76
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL1 MUTATED        1      9      7
  RBL1 WILD-TYPE     88    151    131
D1498V5, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            9            151
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBL1 MUTATED        7     10      0
  RBL1 WILD-TYPE    175    123     72
D1498V6, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2           10            123
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL1 MUTATED        2      8      5      4
  RBL1 WILD-TYPE    110     88     87    182
D1498V7, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            8             88
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBL1 MUTATED        4      4      3      1      4      0      3
  RBL1 WILD-TYPE     56     46     46     39     59    125     96
D1498V8, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            4             46
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL1 MUTATED        6      3      2      7
  RBL1 WILD-TYPE    124     75     66    189
D1498V9, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBL1 MUTATED        3      3      1      1      7      0      2      0      1
  RBL1 WILD-TYPE     37     59     27     79     62     48     41     28     73
D1498V10, multiclass
        clus
vv       RBL1 MUTATED RBL1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL1 MUTATED        1      1      0      0
  RBL1 WILD-TYPE     32     30     27     19
D1498V11, multiclass
[1] "Remove cluster labels:" "RBL1 MUTATED"          
clus
  RBL1 MUTATED RBL1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6680     TCGA-D5-5537 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBL1 MUTATED        2      0      0      0
  RBL1 WILD-TYPE     52     10     24     22
D1498V12, multiclass
[1] "Remove cluster labels:" "RBL1 MUTATED"          
clus
  RBL1 MUTATED RBL1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6680     TCGA-D5-5537 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" "RBL1 WILD-TYPE" 

Clustering(1499) Variable = RBM15B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        0      0      0      2
  RBM15B WILD-TYPE     46     58     64     41
D1499V1, multiclass
[1] "Remove cluster labels:" "RBM15B MUTATED"        
clus
  RBM15B MUTATED RBM15B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3866 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AY-4071 
"RBM15B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RBM15B MUTATED        1      0      1
  RBM15B WILD-TYPE     50     83     76
D1499V2, multiclass
[1] "Remove cluster labels:" "RBM15B MUTATED"        
clus
  RBM15B MUTATED RBM15B WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3866 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-AY-4071 
"RBM15B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        9      0      0      0
  RBM15B WILD-TYPE    169    183    101     20
D1499V3, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              9              169
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RBM15B MUTATED        2      0      5
  RBM15B WILD-TYPE     85     80     95
D1499V4, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RBM15B MUTATED        3      1      5
  RBM15B WILD-TYPE     86    159    133
D1499V5, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RBM15B MUTATED        6      1      2
  RBM15B WILD-TYPE    176    132     70
D1499V6, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              6              176
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        1      4      2      2
  RBM15B WILD-TYPE    111     92     90    184
D1499V7, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM15B MUTATED        1      0      5      0      0      1      2
  RBM15B WILD-TYPE     59     50     44     40     63    124     97
D1499V8, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        2      1      1      4
  RBM15B WILD-TYPE    128     77     67    192
D1499V9, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM15B MUTATED        0      2      0      0      5      0      1      0
  RBM15B WILD-TYPE     40     60     28     80     64     48     42     28
                  vv
clus               CLUS_9
  RBM15B MUTATED        0
  RBM15B WILD-TYPE     74
D1499V10, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        1      0      0      3
  RBM15B WILD-TYPE     32     31     27     16
D1499V11, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15B MUTATED        3      0      1      0
  RBM15B WILD-TYPE     51     10     23     22
D1499V12, multiclass
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1500) Variable = PCDH19 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        4      1      0      4
  PCDH19 WILD-TYPE     42     57     64     39
D1500V1, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH19 MUTATED        4      2      3
  PCDH19 WILD-TYPE     47     81     74
D1500V2, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED       15      4      2      1
  PCDH19 WILD-TYPE    163    179     99     19
D1500V3, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH19 MUTATED        7      0      6
  PCDH19 WILD-TYPE     80     80     94
D1500V4, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH19 MUTATED        4      3     11
  PCDH19 WILD-TYPE     85    157    127
D1500V5, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              3              157
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH19 MUTATED        9      7      2
  PCDH19 WILD-TYPE    173    126     70
D1500V6, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        1      8      4      9
  PCDH19 WILD-TYPE    111     88     88    177
D1500V7, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              8               88
  CLUS_3              4               88
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDH19 MUTATED        1      1      6      4      1      3      6
  PCDH19 WILD-TYPE     59     49     43     36     62    122     93
D1500V8, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              4               36
  CLUS_5              1               62
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        5      3      0     13
  PCDH19 WILD-TYPE    125     75     68    183
D1500V9, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDH19 MUTATED        0      3      1      1     10      1      2      1
  PCDH19 WILD-TYPE     40     59     27     79     59     47     41     27
                  vv
clus               CLUS_9
  PCDH19 MUTATED        2
  PCDH19 WILD-TYPE     72
D1500V10, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5             10               59
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        1      1      2      2
  PCDH19 WILD-TYPE     32     30     25     17
D1500V11, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        3      1      2      0
  PCDH19 WILD-TYPE     51      9     22     22
D1500V12, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1501) Variable = MOV10L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10L1 MUTATED        4      1      0      3
  MOV10L1 WILD-TYPE     42     57     64     40
D1501V1, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOV10L1 MUTATED        5      1      2
  MOV10L1 WILD-TYPE     46     82     75
D1501V2, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10L1 MUTATED       11      4      2      0
  MOV10L1 WILD-TYPE    167    179     99     20
D1501V3, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               4               179
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOV10L1 MUTATED        2      3      5
  MOV10L1 WILD-TYPE     85     77     95
D1501V4, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOV10L1 MUTATED        0      5      9
  MOV10L1 WILD-TYPE     89    155    129
D1501V5, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOV10L1 MUTATED        7      4      3
  MOV10L1 WILD-TYPE    175    129     69
D1501V6, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               4               129
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10L1 MUTATED        3      2      4      8
  MOV10L1 WILD-TYPE    109     94     88    178
D1501V7, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MOV10L1 MUTATED        4      3      3      0      0      1      6
  MOV10L1 WILD-TYPE     56     47     46     40     63    124     93
D1501V8, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               3                47
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10L1 MUTATED        9      0      1      6
  MOV10L1 WILD-TYPE    121     78     67    190
D1501V9, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MOV10L1 MUTATED        4      1      3      2      4      0      0      1
  MOV10L1 WILD-TYPE     36     61     25     78     65     48     43     27
                   vv
clus                CLUS_9
  MOV10L1 MUTATED        1
  MOV10L1 WILD-TYPE     73
D1501V10, multiclass
        clus
vv       MOV10L1 MUTATED MOV10L1 WILD-TYPE
  CLUS_1               4                36
  CLUS_2               1                61
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10L1 MUTATED        2      0      0      0
  MOV10L1 WILD-TYPE     31     31     27     19
D1501V11, multiclass
[1] "Remove cluster labels:" "MOV10L1 MUTATED"       
clus
  MOV10L1 MUTATED MOV10L1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOV10L1 MUTATED        1      0      1      0
  MOV10L1 WILD-TYPE     53     10     23     22
D1501V12, multiclass
[1] "Remove cluster labels:" "MOV10L1 MUTATED"       
clus
  MOV10L1 MUTATED MOV10L1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" "MOV10L1 WILD-TYPE" 

Clustering(1502) Variable = FAF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAF2 MUTATED        2      0      0      1
  FAF2 WILD-TYPE     44     58     64     42
D1502V1, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAF2 MUTATED        3      0      0
  FAF2 WILD-TYPE     48     83     77
D1502V2, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAF2 MUTATED        6      2      0      0
  FAF2 WILD-TYPE    172    181    101     20
D1502V3, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAF2 MUTATED        3      0      2
  FAF2 WILD-TYPE     84     80     98
D1502V4, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAF2 MUTATED        2      4      2
  FAF2 WILD-TYPE     87    156    136
D1502V5, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAF2 MUTATED        3      2      3
  FAF2 WILD-TYPE    179    131     69
D1502V6, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAF2 MUTATED        2      1      2      3
  FAF2 WILD-TYPE    110     95     90    183
D1502V7, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAF2 MUTATED        0      1      1      1      2      0      3
  FAF2 WILD-TYPE     60     49     48     39     61    125     96
D1502V8, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAF2 MUTATED        2      2      1      3
  FAF2 WILD-TYPE    128     76     67    193
D1502V9, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FAF2 MUTATED        1      2      0      1      3      1      0      0      0
  FAF2 WILD-TYPE     39     60     28     79     66     47     43     28     74
D1502V10, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAF2 MUTATED        0      1      2      0
  FAF2 WILD-TYPE     33     30     25     19
D1502V11, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAF2 MUTATED        1      0      1      1
  FAF2 WILD-TYPE     53     10     23     21
D1502V12, multiclass
        clus
vv       FAF2 MUTATED FAF2 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1503) Variable = RBM15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15 MUTATED        2      0      0      4
  RBM15 WILD-TYPE     44     58     64     39
D1503V1, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM15 MUTATED        3      1      2
  RBM15 WILD-TYPE     48     82     75
D1503V2, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15 MUTATED       15      4      1      0
  RBM15 WILD-TYPE    163    179    100     20
D1503V3, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM15 MUTATED        8      3      3
  RBM15 WILD-TYPE     79     77     97
D1503V4, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM15 MUTATED        1      5      9
  RBM15 WILD-TYPE     88    155    129
D1503V5, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM15 MUTATED        8      5      2
  RBM15 WILD-TYPE    174    128     70
D1503V6, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15 MUTATED        3      6      5      6
  RBM15 WILD-TYPE    109     90     87    180
D1503V7, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM15 MUTATED        3      2      7      1      2      0      5
  RBM15 WILD-TYPE     57     48     42     39     61    125     94
D1503V8, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15 MUTATED        8      3      2      7
  RBM15 WILD-TYPE    122     75     66    189
D1503V9, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM15 MUTATED        2      6      3      0      6      0      1      2
  RBM15 WILD-TYPE     38     56     25     80     63     48     42     26
                 vv
clus              CLUS_9
  RBM15 MUTATED        0
  RBM15 WILD-TYPE     74
D1503V10, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15 MUTATED        0      1      1      1
  RBM15 WILD-TYPE     33     30     26     18
D1503V11, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM15 MUTATED        1      1      1      0
  RBM15 WILD-TYPE     53      9     23     22
D1503V12, multiclass
        clus
vv       RBM15 MUTATED RBM15 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1504) Variable = C5ORF42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        6      1      2      4
  C5ORF42 WILD-TYPE     40     57     62     39
D1504V1, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               6                40
  CLUS_2               1                57
  CLUS_3               2                62
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED        6      3      4
  C5ORF42 WILD-TYPE     45     80     73
D1504V2, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               3                80
  CLUS_3               4                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED       30      7      3      1
  C5ORF42 WILD-TYPE    148    176     98     19
D1504V3, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              30               148
  CLUS_2               7               176
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED       16      3      9
  C5ORF42 WILD-TYPE     71     77     91
D1504V4, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              16                71
  CLUS_2               3                77
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED        5      8     20
  C5ORF42 WILD-TYPE     84    152    118
D1504V5, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               8               152
  CLUS_3              20               118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED       19      5      9
  C5ORF42 WILD-TYPE    163    128     63
D1504V6, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              19               163
  CLUS_2               5               128
  CLUS_3               9                63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        5     13     10     13
  C5ORF42 WILD-TYPE    107     83     82    173
D1504V7, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               5               107
  CLUS_2              13                83
  CLUS_3              10                82
  CLUS_4              13               173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C5ORF42 MUTATED        4      4     11      7      3      4      8
  C5ORF42 WILD-TYPE     56     46     38     33     60    121     91
D1504V8, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               4                56
  CLUS_2               4                46
  CLUS_3              11                38
  CLUS_4               7                33
  CLUS_5               3                60
  CLUS_6               4               121
  CLUS_7               8                91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED       12      8      6     14
  C5ORF42 WILD-TYPE    118     70     62    182
D1504V9, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              12               118
  CLUS_2               8                70
  CLUS_3               6                62
  CLUS_4              14               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C5ORF42 MUTATED        3      7      1      7     10      2      7      1
  C5ORF42 WILD-TYPE     37     55     27     73     59     46     36     27
                   vv
clus                CLUS_9
  C5ORF42 MUTATED        2
  C5ORF42 WILD-TYPE     72
D1504V10, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               7                55
  CLUS_3               1                27
  CLUS_4               7                73
  CLUS_5              10                59
  CLUS_6               2                46
  CLUS_7               7                36
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        4      3      4      5
  C5ORF42 WILD-TYPE     29     28     23     14
D1504V11, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               3                28
  CLUS_3               4                23
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        8      0      4      4
  C5ORF42 WILD-TYPE     46     10     20     18
D1504V12, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               8                46
  CLUS_2               0                10
  CLUS_3               4                20
  CLUS_4               4                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1505) Variable = BTBD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD3 MUTATED        0      0      0      1
  BTBD3 WILD-TYPE     46     58     64     42
D1505V1, multiclass
[1] "Remove cluster labels:" "BTBD3 MUTATED"         
clus
  BTBD3 MUTATED BTBD3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD3 MUTATED        1      0      0
  BTBD3 WILD-TYPE     50     83     77
D1505V2, multiclass
[1] "Remove cluster labels:" "BTBD3 MUTATED"         
clus
  BTBD3 MUTATED BTBD3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD3 MUTATED        9      1      3      0
  BTBD3 WILD-TYPE    169    182     98     20
D1505V3, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD3 MUTATED        3      2      6
  BTBD3 WILD-TYPE     84     78     94
D1505V4, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD3 MUTATED        1      3      7
  BTBD3 WILD-TYPE     88    157    131
D1505V5, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD3 MUTATED        6      5      0
  BTBD3 WILD-TYPE    176    128     72
D1505V6, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD3 MUTATED        1      7      3      2
  BTBD3 WILD-TYPE    111     89     89    184
D1505V7, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTBD3 MUTATED        0      4      4      3      0      0      2
  BTBD3 WILD-TYPE     60     46     45     37     63    125     97
D1505V8, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             4              46
  CLUS_3             4              45
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD3 MUTATED        9      0      1      2
  BTBD3 WILD-TYPE    121     78     67    194
D1505V9, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BTBD3 MUTATED        2      2      1      1      4      1      0      0
  BTBD3 WILD-TYPE     38     60     27     79     65     47     43     28
                 vv
clus              CLUS_9
  BTBD3 MUTATED        1
  BTBD3 WILD-TYPE     73
D1505V10, multiclass
        clus
vv       BTBD3 MUTATED BTBD3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD3 MUTATED        0      0      1      1
  BTBD3 WILD-TYPE     33     31     26     18
D1505V11, multiclass
[1] "Remove cluster labels:" "BTBD3 MUTATED"         
clus
  BTBD3 MUTATED BTBD3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD3 MUTATED        0      0      2      0
  BTBD3 WILD-TYPE     54     10     22     22
D1505V12, multiclass
[1] "Remove cluster labels:" "BTBD3 MUTATED"         
clus
  BTBD3 MUTATED BTBD3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" "BTBD3 WILD-TYPE" 

Clustering(1506) Variable = NOVA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOVA1 MUTATED        3      1      0      2
  NOVA1 WILD-TYPE     43     57     64     41
D1506V1, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOVA1 MUTATED        2      3      1
  NOVA1 WILD-TYPE     49     80     76
D1506V2, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOVA1 MUTATED       12      4      2      1
  NOVA1 WILD-TYPE    166    179     99     19
D1506V3, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOVA1 MUTATED        3      5      7
  NOVA1 WILD-TYPE     84     75     93
D1506V4, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             5              75
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOVA1 MUTATED        3      7      7
  NOVA1 WILD-TYPE     86    153    131
D1506V5, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOVA1 MUTATED        8      6      3
  NOVA1 WILD-TYPE    174    127     69
D1506V6, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOVA1 MUTATED        6      2      7      4
  NOVA1 WILD-TYPE    106     94     85    182
D1506V7, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             2              94
  CLUS_3             7              85
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOVA1 MUTATED        3      1      6      0      4      2      3
  NOVA1 WILD-TYPE     57     49     43     40     59    123     96
D1506V8, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOVA1 MUTATED        6      4      2      7
  NOVA1 WILD-TYPE    124     74     66    189
D1506V9, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NOVA1 MUTATED        0      5      2      3      5      0      2      2
  NOVA1 WILD-TYPE     40     57     26     77     64     48     41     26
                 vv
clus              CLUS_9
  NOVA1 MUTATED        0
  NOVA1 WILD-TYPE     74
D1506V10, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOVA1 MUTATED        1      2      2      3
  NOVA1 WILD-TYPE     32     29     25     16
D1506V11, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOVA1 MUTATED        3      1      2      2
  NOVA1 WILD-TYPE     51      9     22     20
D1506V12, multiclass
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1507) Variable = SBSN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        4      0      0      0
  SBSN WILD-TYPE     42     58     64     43
D1507V1, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBSN MUTATED        4      0      0
  SBSN WILD-TYPE     47     83     77
D1507V2, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        8      1      0      1
  SBSN WILD-TYPE    170    182    101     19
D1507V3, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBSN MUTATED        1      0      5
  SBSN WILD-TYPE     86     80     95
D1507V4, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBSN MUTATED        1      2      5
  SBSN WILD-TYPE     88    158    133
D1507V5, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBSN MUTATED        4      3      1
  SBSN WILD-TYPE    178    130     71
D1507V6, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        1      3      2      4
  SBSN WILD-TYPE    111     93     90    182
D1507V7, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SBSN MUTATED        0      2      3      1      0      0      4
  SBSN WILD-TYPE     60     48     46     39     63    125     95
D1507V8, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        5      1      0      2
  SBSN WILD-TYPE    125     77     68    194
D1507V9, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SBSN MUTATED        1      2      0      1      3      0      1      0      0
  SBSN WILD-TYPE     39     60     28     79     66     48     42     28     74
D1507V10, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        0      1      1      1
  SBSN WILD-TYPE     33     30     26     18
D1507V11, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBSN MUTATED        2      0      1      0
  SBSN WILD-TYPE     52     10     23     22
D1507V12, multiclass
        clus
vv       SBSN MUTATED SBSN WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1508) Variable = OR8B12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8B12 MUTATED        1      0      0      0
  OR8B12 WILD-TYPE     45     58     64     43
D1508V1, multiclass
[1] "Remove cluster labels:" "OR8B12 MUTATED"        
clus
  OR8B12 MUTATED OR8B12 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR8B12 MUTATED        1      0      0
  OR8B12 WILD-TYPE     50     83     77
D1508V2, multiclass
[1] "Remove cluster labels:" "OR8B12 MUTATED"        
clus
  OR8B12 MUTATED OR8B12 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8B12 MUTATED        2      1      1      0
  OR8B12 WILD-TYPE    176    182    100     20
D1508V3, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR8B12 MUTATED        1      1      1
  OR8B12 WILD-TYPE     86     79     99
D1508V4, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR8B12 MUTATED        1      1      2
  OR8B12 WILD-TYPE     88    159    136
D1508V5, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR8B12 MUTATED        1      2      1
  OR8B12 WILD-TYPE    181    131     71
D1508V6, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8B12 MUTATED        1      1      1      1
  OR8B12 WILD-TYPE    111     95     91    185
D1508V7, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR8B12 MUTATED        1      1      0      0      1      0      1
  OR8B12 WILD-TYPE     59     49     49     40     62    125     98
D1508V8, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8B12 MUTATED        1      0      1      2
  OR8B12 WILD-TYPE    129     78     67    194
D1508V9, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR8B12 MUTATED        0      0      1      0      1      0      1      0
  OR8B12 WILD-TYPE     40     62     27     80     68     48     42     28
                  vv
clus               CLUS_9
  OR8B12 MUTATED        1
  OR8B12 WILD-TYPE     73
D1508V10, multiclass
        clus
vv       OR8B12 MUTATED OR8B12 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8B12 MUTATED        0      0      1      0
  OR8B12 WILD-TYPE     33     31     26     19
D1508V11, multiclass
[1] "Remove cluster labels:" "OR8B12 MUTATED"        
clus
  OR8B12 MUTATED OR8B12 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-G5-6641 
"OR8B12 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8B12 MUTATED        0      0      1      0
  OR8B12 WILD-TYPE     54     10     23     22
D1508V12, multiclass
[1] "Remove cluster labels:" "OR8B12 MUTATED"        
clus
  OR8B12 MUTATED OR8B12 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" "OR8B12 WILD-TYPE" 
      TCGA-G5-6641 
"OR8B12 WILD-TYPE" 

Clustering(1509) Variable = AGXT2L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGXT2L1 MUTATED        4      0      1      1
  AGXT2L1 WILD-TYPE     42     58     63     42
D1509V1, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGXT2L1 MUTATED        3      1      2
  AGXT2L1 WILD-TYPE     48     82     75
D1509V2, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGXT2L1 MUTATED       10      1      2      0
  AGXT2L1 WILD-TYPE    168    182     99     20
D1509V3, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGXT2L1 MUTATED        5      0      2
  AGXT2L1 WILD-TYPE     82     80     98
D1509V4, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGXT2L1 MUTATED        0      5      5
  AGXT2L1 WILD-TYPE     89    155    133
D1509V5, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  AGXT2L1 MUTATED        5      3      2
  AGXT2L1 WILD-TYPE    177    130     70
D1509V6, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGXT2L1 MUTATED        0      1      5      7
  AGXT2L1 WILD-TYPE    112     95     87    179
D1509V7, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                95
  CLUS_3               5                87
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGXT2L1 MUTATED        1      0      5      0      1      2      4
  AGXT2L1 WILD-TYPE     59     50     44     40     62    123     95
D1509V8, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGXT2L1 MUTATED        2      4      1      6
  AGXT2L1 WILD-TYPE    128     74     67    190
D1509V9, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGXT2L1 MUTATED        2      4      0      1      3      0      0      1
  AGXT2L1 WILD-TYPE     38     58     28     79     66     48     43     27
                   vv
clus                CLUS_9
  AGXT2L1 MUTATED        2
  AGXT2L1 WILD-TYPE     72
D1509V10, multiclass
        clus
vv       AGXT2L1 MUTATED AGXT2L1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               4                58
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGXT2L1 MUTATED        0      1      0      1
  AGXT2L1 WILD-TYPE     33     30     27     18
D1509V11, multiclass
[1] "Remove cluster labels:" "AGXT2L1 MUTATED"       
clus
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGXT2L1 MUTATED        2      0      0      0
  AGXT2L1 WILD-TYPE     52     10     24     22
D1509V12, multiclass
[1] "Remove cluster labels:" "AGXT2L1 MUTATED"       
clus
  AGXT2L1 MUTATED AGXT2L1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" "AGXT2L1 WILD-TYPE" 

Clustering(1510) Variable = JAK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        2      0      0      1
  JAK1 WILD-TYPE     44     58     64     42
D1510V1, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK1 MUTATED        2      0      1
  JAK1 WILD-TYPE     49     83     76
D1510V2, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED       16      0      3      1
  JAK1 WILD-TYPE    162    183     98     19
D1510V3, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            0            183
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK1 MUTATED        9      0      7
  JAK1 WILD-TYPE     78     80     93
D1510V4, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            0             80
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK1 MUTATED        2      3     10
  JAK1 WILD-TYPE     87    157    128
D1510V5, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK1 MUTATED       10      4      1
  JAK1 WILD-TYPE    172    129     71
D1510V6, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        0      6     11      3
  JAK1 WILD-TYPE    112     90     81    183
D1510V7, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            6             90
  CLUS_3           11             81
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  JAK1 MUTATED        2      0     14      0      2      0      2
  JAK1 WILD-TYPE     58     50     35     40     61    125     97
D1510V8, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3           14             35
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        9      6      0      5
  JAK1 WILD-TYPE    121     72     68    191
D1510V9, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            6             72
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  JAK1 MUTATED        3      5      0      2      7      0      2      1      0
  JAK1 WILD-TYPE     37     57     28     78     62     48     41     27     74
D1510V10, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            5             57
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        3      1      0      2
  JAK1 WILD-TYPE     30     30     27     17
D1510V11, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        5      0      1      0
  JAK1 WILD-TYPE     49     10     23     22
D1510V12, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1511) Variable = CCDC110 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC110 MUTATED        2      0      0      3
  CCDC110 WILD-TYPE     44     58     64     40
D1511V1, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC110 MUTATED        1      2      2
  CCDC110 WILD-TYPE     50     81     75
D1511V2, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC110 MUTATED       13      0      1      0
  CCDC110 WILD-TYPE    165    183    100     20
D1511V3, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC110 MUTATED        3      1      5
  CCDC110 WILD-TYPE     84     79     95
D1511V4, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC110 MUTATED        1      7      3
  CCDC110 WILD-TYPE     88    153    135
D1511V5, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               7               153
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC110 MUTATED        5      6      0
  CCDC110 WILD-TYPE    177    127     72
D1511V6, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               6               127
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC110 MUTATED        0      4      5      5
  CCDC110 WILD-TYPE    112     92     87    181
D1511V7, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               5                87
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC110 MUTATED        1      0      6      0      2      1      4
  CCDC110 WILD-TYPE     59     50     43     40     61    124     95
D1511V8, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC110 MUTATED        4      3      0      7
  CCDC110 WILD-TYPE    126     75     68    189
D1511V9, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC110 MUTATED        1      4      1      2      5      0      0      0
  CCDC110 WILD-TYPE     39     58     27     78     64     48     43     28
                   vv
clus                CLUS_9
  CCDC110 MUTATED        1
  CCDC110 WILD-TYPE     73
D1511V10, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC110 MUTATED        0      0      0      3
  CCDC110 WILD-TYPE     33     31     27     16
D1511V11, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC110 MUTATED        2      0      1      0
  CCDC110 WILD-TYPE     52     10     23     22
D1511V12, multiclass
        clus
vv       CCDC110 MUTATED CCDC110 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1512) Variable = LMOD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD1 MUTATED        2      0      0      1
  LMOD1 WILD-TYPE     44     58     64     42
D1512V1, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD1 MUTATED        2      0      1
  LMOD1 WILD-TYPE     49     83     76
D1512V2, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD1 MUTATED        9      2      2      0
  LMOD1 WILD-TYPE    169    181     99     20
D1512V3, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD1 MUTATED        3      3      4
  LMOD1 WILD-TYPE     84     77     96
D1512V4, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD1 MUTATED        1      4      8
  LMOD1 WILD-TYPE     88    156    130
D1512V5, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD1 MUTATED        6      5      2
  LMOD1 WILD-TYPE    176    128     70
D1512V6, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD1 MUTATED        2      3      4      4
  LMOD1 WILD-TYPE    110     93     88    182
D1512V7, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LMOD1 MUTATED        3      1      3      0      3      0      3
  LMOD1 WILD-TYPE     57     49     46     40     60    125     96
D1512V8, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD1 MUTATED        4      3      0      6
  LMOD1 WILD-TYPE    126     75     68    190
D1512V9, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LMOD1 MUTATED        1      3      0      1      4      1      0      1
  LMOD1 WILD-TYPE     39     59     28     79     65     47     43     27
                 vv
clus              CLUS_9
  LMOD1 MUTATED        2
  LMOD1 WILD-TYPE     72
D1512V10, multiclass
        clus
vv       LMOD1 MUTATED LMOD1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD1 MUTATED        0      0      0      0
  LMOD1 WILD-TYPE     33     31     27     19
D1512V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD1 MUTATED        0      0      0      0
  LMOD1 WILD-TYPE     54     10     24     22
D1512V12, multiclass

Clustering(1513) Variable = C2CD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        2      1      0      3
  C2CD3 WILD-TYPE     44     57     64     40
D1513V1, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C2CD3 MUTATED        2      3      1
  C2CD3 WILD-TYPE     49     80     76
D1513V2, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED       11      2      4      0
  C2CD3 WILD-TYPE    167    181     97     20
D1513V3, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C2CD3 MUTATED        2      2      6
  C2CD3 WILD-TYPE     85     78     94
D1513V4, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C2CD3 MUTATED        2      4      6
  C2CD3 WILD-TYPE     87    156    132
D1513V5, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C2CD3 MUTATED        6      5      1
  C2CD3 WILD-TYPE    176    128     71
D1513V6, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        2      7      1      7
  C2CD3 WILD-TYPE    110     89     91    179
D1513V7, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             1              91
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C2CD3 MUTATED        2      3      4      1      1      2      4
  C2CD3 WILD-TYPE     58     47     45     39     62    123     95
D1513V8, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        7      0      3      7
  C2CD3 WILD-TYPE    123     78     65    189
D1513V9, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             3              65
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C2CD3 MUTATED        1      1      2      4      7      1      0      0
  C2CD3 WILD-TYPE     39     61     26     76     62     47     43     28
                 vv
clus              CLUS_9
  C2CD3 MUTATED        1
  C2CD3 WILD-TYPE     73
D1513V10, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        0      0      2      0
  C2CD3 WILD-TYPE     33     31     25     19
D1513V11, multiclass
[1] "Remove cluster labels:" "C2CD3 MUTATED"         
clus
  C2CD3 MUTATED C2CD3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        0      1      1      0
  C2CD3 WILD-TYPE     54      9     23     22
D1513V12, multiclass
[1] "Remove cluster labels:" "C2CD3 MUTATED"         
clus
  C2CD3 MUTATED C2CD3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" "C2CD3 WILD-TYPE" 

Clustering(1514) Variable = AFF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF1 MUTATED        2      0      0      2
  AFF1 WILD-TYPE     44     58     64     41
D1514V1, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF1 MUTATED        2      0      2
  AFF1 WILD-TYPE     49     83     75
D1514V2, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF1 MUTATED       10      4      0      0
  AFF1 WILD-TYPE    168    179    101     20
D1514V3, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF1 MUTATED        2      2      6
  AFF1 WILD-TYPE     85     78     94
D1514V4, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF1 MUTATED        0      4      7
  AFF1 WILD-TYPE     89    156    131
D1514V5, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF1 MUTATED        9      2      0
  AFF1 WILD-TYPE    173    131     72
D1514V6, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF1 MUTATED        3      3      4      4
  AFF1 WILD-TYPE    109     93     88    182
D1514V7, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFF1 MUTATED        3      0      4      0      2      0      5
  AFF1 WILD-TYPE     57     50     45     40     61    125     94
D1514V8, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF1 MUTATED        4      3      1      5
  AFF1 WILD-TYPE    126     75     67    191
D1514V9, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AFF1 MUTATED        2      3      1      0      4      0      3      0      0
  AFF1 WILD-TYPE     38     59     27     80     65     48     40     28     74
D1514V10, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF1 MUTATED        1      0      1      2
  AFF1 WILD-TYPE     32     31     26     17
D1514V11, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF1 MUTATED        3      0      0      1
  AFF1 WILD-TYPE     51     10     24     21
D1514V12, multiclass
        clus
vv       AFF1 MUTATED AFF1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1515) Variable = MANBA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANBA MUTATED        2      0      0      5
  MANBA WILD-TYPE     44     58     64     38
D1515V1, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MANBA MUTATED        6      0      1
  MANBA WILD-TYPE     45     83     76
D1515V2, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             6              45
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANBA MUTATED       11      2      0      0
  MANBA WILD-TYPE    167    181    101     20
D1515V3, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MANBA MUTATED        3      2      1
  MANBA WILD-TYPE     84     78     99
D1515V4, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MANBA MUTATED        0      4      7
  MANBA WILD-TYPE     89    156    131
D1515V5, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MANBA MUTATED        7      4      0
  MANBA WILD-TYPE    175    129     72
D1515V6, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANBA MUTATED        2      3      2      6
  MANBA WILD-TYPE    110     93     90    180
D1515V7, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MANBA MUTATED        2      2      1      1      1      0      6
  MANBA WILD-TYPE     58     48     48     39     62    125     93
D1515V8, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANBA MUTATED        3      2      0      6
  MANBA WILD-TYPE    127     76     68    190
D1515V9, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MANBA MUTATED        1      1      0      1      4      2      0      1
  MANBA WILD-TYPE     39     61     28     79     65     46     43     27
                 vv
clus              CLUS_9
  MANBA MUTATED        1
  MANBA WILD-TYPE     73
D1515V10, multiclass
        clus
vv       MANBA MUTATED MANBA WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANBA MUTATED        1      0      0      1
  MANBA WILD-TYPE     32     31     27     18
D1515V11, multiclass
[1] "Remove cluster labels:" "MANBA MUTATED"         
clus
  MANBA MUTATED MANBA WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANBA MUTATED        1      0      0      1
  MANBA WILD-TYPE     53     10     24     21
D1515V12, multiclass
[1] "Remove cluster labels:" "MANBA MUTATED"         
clus
  MANBA MUTATED MANBA WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" "MANBA WILD-TYPE" 

Clustering(1516) Variable = PROM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROM1 MUTATED        0      0      0      3
  PROM1 WILD-TYPE     46     58     64     40
D1516V1, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PROM1 MUTATED        1      1      1
  PROM1 WILD-TYPE     50     82     76
D1516V2, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROM1 MUTATED        8      7      1      0
  PROM1 WILD-TYPE    170    176    100     20
D1516V3, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             7             176
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PROM1 MUTATED        5      4      4
  PROM1 WILD-TYPE     82     76     96
D1516V4, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4              76
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PROM1 MUTATED        1      6      7
  PROM1 WILD-TYPE     88    154    131
D1516V5, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PROM1 MUTATED        6      6      2
  PROM1 WILD-TYPE    176    127     70
D1516V6, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROM1 MUTATED        6      4      3      3
  PROM1 WILD-TYPE    106     92     89    183
D1516V7, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PROM1 MUTATED        6      1      5      1      1      0      2
  PROM1 WILD-TYPE     54     49     44     39     62    125     97
D1516V8, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROM1 MUTATED        4      4      3      5
  PROM1 WILD-TYPE    126     74     65    191
D1516V9, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             3              65
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PROM1 MUTATED        2      2      2      2      5      0      3      0
  PROM1 WILD-TYPE     38     60     26     78     64     48     40     28
                 vv
clus              CLUS_9
  PROM1 MUTATED        0
  PROM1 WILD-TYPE     74
D1516V10, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROM1 MUTATED        1      1      2      1
  PROM1 WILD-TYPE     32     30     25     18
D1516V11, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PROM1 MUTATED        1      1      2      1
  PROM1 WILD-TYPE     53      9     22     21
D1516V12, multiclass
        clus
vv       PROM1 MUTATED PROM1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1517) Variable = AMBRA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMBRA1 MUTATED        0      0      0      4
  AMBRA1 WILD-TYPE     46     58     64     39
D1517V1, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AMBRA1 MUTATED        3      0      1
  AMBRA1 WILD-TYPE     48     83     76
D1517V2, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMBRA1 MUTATED       16      1      2      0
  AMBRA1 WILD-TYPE    162    182     99     20
D1517V3, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1             16              162
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AMBRA1 MUTATED        5      4      6
  AMBRA1 WILD-TYPE     82     76     94
D1517V4, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AMBRA1 MUTATED        3      4     11
  AMBRA1 WILD-TYPE     86    156    127
D1517V5, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AMBRA1 MUTATED       10      6      2
  AMBRA1 WILD-TYPE    172    127     70
D1517V6, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMBRA1 MUTATED        3      6      6      4
  AMBRA1 WILD-TYPE    109     90     86    182
D1517V7, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              6               90
  CLUS_3              6               86
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMBRA1 MUTATED        3      3      7      0      2      0      4
  AMBRA1 WILD-TYPE     57     47     42     40     61    125     95
D1517V8, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              3               47
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMBRA1 MUTATED        8      4      1      4
  AMBRA1 WILD-TYPE    122     74     67    192
D1517V9, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AMBRA1 MUTATED        0      7      1      2      4      1      1      0
  AMBRA1 WILD-TYPE     40     55     27     78     65     47     42     28
                  vv
clus               CLUS_9
  AMBRA1 MUTATED        1
  AMBRA1 WILD-TYPE     73
D1517V10, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              7               55
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMBRA1 MUTATED        2      2      0      2
  AMBRA1 WILD-TYPE     31     29     27     17
D1517V11, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMBRA1 MUTATED        4      1      0      1
  AMBRA1 WILD-TYPE     50      9     24     21
D1517V12, multiclass
        clus
vv       AMBRA1 MUTATED AMBRA1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1518) Variable = TBC1D10C MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        1      0      0      1
  TBC1D10C WILD-TYPE     45     58     64     42
D1518V1, multiclass
[1] "Remove cluster labels:" "TBC1D10C MUTATED"      
clus
  TBC1D10C MUTATED TBC1D10C WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3831 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3950         TCGA-AA-3952 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3956         TCGA-AA-3966 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3976 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3977         TCGA-AA-3979         TCGA-AA-3980 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D10C MUTATED        2      0      0
  TBC1D10C WILD-TYPE     49     83     77
D1518V2, multiclass
[1] "Remove cluster labels:" "TBC1D10C MUTATED"      
clus
  TBC1D10C MUTATED TBC1D10C WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3831 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3950         TCGA-AA-3952 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3956         TCGA-AA-3966 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3976 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3977         TCGA-AA-3979         TCGA-AA-3980 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"TBC1D10C WILD-TYPE" "TBC1D10C WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        5      1      2      1
  TBC1D10C WILD-TYPE    173    182     99     19
D1518V3, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                5                173
  CLUS_2                1                182
  CLUS_3                2                 99
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D10C MUTATED        1      1      5
  TBC1D10C WILD-TYPE     86     79     95
D1518V4, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                1                 79
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D10C MUTATED        1      2      3
  TBC1D10C WILD-TYPE     88    158    135
D1518V5, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D10C MUTATED        5      1      0
  TBC1D10C WILD-TYPE    177    132     72
D1518V6, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                5                177
  CLUS_2                1                132
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        2      3      2      2
  TBC1D10C WILD-TYPE    110     93     90    184
D1518V7, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                2                 90
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TBC1D10C MUTATED        2      0      4      1      0      0      2
  TBC1D10C WILD-TYPE     58     50     45     39     63    125     97
D1518V8, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                4                 45
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        6      0      1      2
  TBC1D10C WILD-TYPE    124     78     67    194
D1518V9, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                6                124
  CLUS_2                0                 78
  CLUS_3                1                 67
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TBC1D10C MUTATED        1      1      0      0      4      1      1      1
  TBC1D10C WILD-TYPE     39     61     28     80     65     47     42     27
                    vv
clus                 CLUS_9
  TBC1D10C MUTATED        0
  TBC1D10C WILD-TYPE     74
D1518V10, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                4                 65
  CLUS_6                1                 47
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        2      0      1      1
  TBC1D10C WILD-TYPE     31     31     26     18
D1518V11, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                1                 26
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        2      0      0      2
  TBC1D10C WILD-TYPE     52     10     24     20
D1518V12, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1519) Variable = CD84 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD84 MUTATED        1      0      0      2
  CD84 WILD-TYPE     45     58     64     41
D1519V1, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD84 MUTATED        2      0      1
  CD84 WILD-TYPE     49     83     76
D1519V2, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD84 MUTATED        9      0      2      1
  CD84 WILD-TYPE    169    183     99     19
D1519V3, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD84 MUTATED        4      2      3
  CD84 WILD-TYPE     83     78     97
D1519V4, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD84 MUTATED        1      4      5
  CD84 WILD-TYPE     88    156    133
D1519V5, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD84 MUTATED        4      6      0
  CD84 WILD-TYPE    178    127     72
D1519V6, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD84 MUTATED        3      3      3      3
  CD84 WILD-TYPE    109     93     89    183
D1519V7, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD84 MUTATED        3      1      2      1      2      0      3
  CD84 WILD-TYPE     57     49     47     39     61    125     96
D1519V8, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD84 MUTATED        2      3      2      5
  CD84 WILD-TYPE    128     75     66    191
D1519V9, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CD84 MUTATED        1      2      0      1      4      1      2      0      1
  CD84 WILD-TYPE     39     60     28     79     65     47     41     28     73
D1519V10, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD84 MUTATED        1      1      1      0
  CD84 WILD-TYPE     32     30     26     19
D1519V11, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD84 MUTATED        1      0      1      1
  CD84 WILD-TYPE     53     10     23     21
D1519V12, multiclass
        clus
vv       CD84 MUTATED CD84 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1520) Variable = DNMT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT1 MUTATED        4      2      2      7
  DNMT1 WILD-TYPE     42     56     62     36
D1520V1, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             2              62
  CLUS_4             7              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNMT1 MUTATED        8      4      3
  DNMT1 WILD-TYPE     43     79     74
D1520V2, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             4              79
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT1 MUTATED       17      5      2      0
  DNMT1 WILD-TYPE    161    178     99     20
D1520V3, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             5             178
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNMT1 MUTATED        2      0      6
  DNMT1 WILD-TYPE     85     80     94
D1520V4, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNMT1 MUTATED        4      7      8
  DNMT1 WILD-TYPE     85    153    130
D1520V5, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             7             153
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNMT1 MUTATED        9      5      5
  DNMT1 WILD-TYPE    173    128     67
D1520V6, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             5             128
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT1 MUTATED        0      7      2     14
  DNMT1 WILD-TYPE    112     89     90    172
D1520V7, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             7              89
  CLUS_3             2              90
  CLUS_4            14             172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNMT1 MUTATED        1      3      5      0      0      4     10
  DNMT1 WILD-TYPE     59     47     44     40     63    121     89
D1520V8, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             4             121
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT1 MUTATED        4      1      1     16
  DNMT1 WILD-TYPE    126     77     67    180
D1520V9, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4            16             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNMT1 MUTATED        0      2      1      1     10      0      1      3
  DNMT1 WILD-TYPE     40     60     27     79     59     48     42     25
                 vv
clus              CLUS_9
  DNMT1 MUTATED        4
  DNMT1 WILD-TYPE     70
D1520V10, multiclass
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             3              25
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT1 MUTATED        0      0      0      1
  DNMT1 WILD-TYPE     33     31     27     18
D1520V11, multiclass
[1] "Remove cluster labels:" "DNMT1 MUTATED"         
clus
  DNMT1 MUTATED DNMT1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-G5-6641 
"DNMT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNMT1 MUTATED        1      0      0      0
  DNMT1 WILD-TYPE     53     10     24     22
D1520V12, multiclass
[1] "Remove cluster labels:" "DNMT1 MUTATED"         
clus
  DNMT1 MUTATED DNMT1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-G5-6641 
"DNMT1 WILD-TYPE" 

Clustering(1521) Variable = TUT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUT1 MUTATED        1      1      0      2
  TUT1 WILD-TYPE     45     57     64     41
D1521V1, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TUT1 MUTATED        2      0      2
  TUT1 WILD-TYPE     49     83     75
D1521V2, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUT1 MUTATED        9      1      0      0
  TUT1 WILD-TYPE    169    182    101     20
D1521V3, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TUT1 MUTATED        3      0      3
  TUT1 WILD-TYPE     84     80     97
D1521V4, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TUT1 MUTATED        0      0      8
  TUT1 WILD-TYPE     89    160    130
D1521V5, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            0            160
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TUT1 MUTATED        7      1      0
  TUT1 WILD-TYPE    175    132     72
D1521V6, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUT1 MUTATED        0      2      4      4
  TUT1 WILD-TYPE    112     94     88    182
D1521V7, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TUT1 MUTATED        0      3      3      0      0      1      3
  TUT1 WILD-TYPE     60     47     46     40     63    124     96
D1521V8, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUT1 MUTATED        4      1      0      5
  TUT1 WILD-TYPE    126     77     68    191
D1521V9, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TUT1 MUTATED        2      2      2      2      2      0      0      0      0
  TUT1 WILD-TYPE     38     60     26     78     67     48     43     28     74
D1521V10, multiclass
        clus
vv       TUT1 MUTATED TUT1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUT1 MUTATED        2      0      0      0
  TUT1 WILD-TYPE     31     31     27     19
D1521V11, multiclass
[1] "Remove cluster labels:" "TUT1 MUTATED"          
clus
  TUT1 MUTATED TUT1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUT1 MUTATED        2      0      0      0
  TUT1 WILD-TYPE     52     10     24     22
D1521V12, multiclass
[1] "Remove cluster labels:" "TUT1 MUTATED"          
clus
  TUT1 MUTATED TUT1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" "TUT1 WILD-TYPE" 

Clustering(1522) Variable = OR9G4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9G4 MUTATED        0      0      0      2
  OR9G4 WILD-TYPE     46     58     64     41
D1522V1, multiclass
[1] "Remove cluster labels:" "OR9G4 MUTATED"         
clus
  OR9G4 MUTATED OR9G4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AY-4071 
"OR9G4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9G4 MUTATED        1      1      0
  OR9G4 WILD-TYPE     50     82     77
D1522V2, multiclass
[1] "Remove cluster labels:" "OR9G4 MUTATED"         
clus
  OR9G4 MUTATED OR9G4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AY-4071 
"OR9G4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9G4 MUTATED        4      2      2      0
  OR9G4 WILD-TYPE    174    181     99     20
D1522V3, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9G4 MUTATED        2      1      3
  OR9G4 WILD-TYPE     85     79     97
D1522V4, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9G4 MUTATED        2      2      4
  OR9G4 WILD-TYPE     87    158    134
D1522V5, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9G4 MUTATED        5      3      0
  OR9G4 WILD-TYPE    177    130     72
D1522V6, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9G4 MUTATED        1      3      2      2
  OR9G4 WILD-TYPE    111     93     90    184
D1522V7, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR9G4 MUTATED        1      2      0      1      2      0      2
  OR9G4 WILD-TYPE     59     48     49     39     61    125     97
D1522V8, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9G4 MUTATED        3      2      0      2
  OR9G4 WILD-TYPE    127     76     68    194
D1522V9, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR9G4 MUTATED        2      1      3      1      0      0      0      0
  OR9G4 WILD-TYPE     38     61     25     79     69     48     43     28
                 vv
clus              CLUS_9
  OR9G4 MUTATED        0
  OR9G4 WILD-TYPE     74
D1522V10, multiclass
        clus
vv       OR9G4 MUTATED OR9G4 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9G4 MUTATED        1      1      0      0
  OR9G4 WILD-TYPE     32     30     27     19
D1522V11, multiclass
[1] "Remove cluster labels:" "OR9G4 MUTATED"         
clus
  OR9G4 MUTATED OR9G4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9G4 MUTATED        1      0      1      0
  OR9G4 WILD-TYPE     53     10     23     22
D1522V12, multiclass
[1] "Remove cluster labels:" "OR9G4 MUTATED"         
clus
  OR9G4 MUTATED OR9G4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" "OR9G4 WILD-TYPE" 

Clustering(1523) Variable = SLC45A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A2 MUTATED        1      3      0      1
  SLC45A2 WILD-TYPE     45     55     64     42
D1523V1, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               3                55
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A2 MUTATED        0      2      3
  SLC45A2 WILD-TYPE     51     81     74
D1523V2, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A2 MUTATED        4      3      4      0
  SLC45A2 WILD-TYPE    174    180     97     20
D1523V3, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               3               180
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A2 MUTATED        2      0      4
  SLC45A2 WILD-TYPE     85     80     96
D1523V4, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A2 MUTATED        0      3      4
  SLC45A2 WILD-TYPE     89    157    134
D1523V5, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A2 MUTATED        4      3      0
  SLC45A2 WILD-TYPE    178    130     72
D1523V6, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A2 MUTATED        0      2      4      5
  SLC45A2 WILD-TYPE    112     94     88    181
D1523V7, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC45A2 MUTATED        2      2      2      0      1      1      3
  SLC45A2 WILD-TYPE     58     48     47     40     62    124     96
D1523V8, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A2 MUTATED        4      1      0      6
  SLC45A2 WILD-TYPE    126     77     68    190
D1523V9, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC45A2 MUTATED        2      1      0      2      5      0      0      0
  SLC45A2 WILD-TYPE     38     61     28     78     64     48     43     28
                   vv
clus                CLUS_9
  SLC45A2 MUTATED        1
  SLC45A2 WILD-TYPE     73
D1523V10, multiclass
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A2 MUTATED        0      0      0      0
  SLC45A2 WILD-TYPE     33     31     27     19
D1523V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A2 MUTATED        0      0      0      0
  SLC45A2 WILD-TYPE     54     10     24     22
D1523V12, multiclass

Clustering(1524) Variable = SPARCL1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPARCL1 MUTATED        2      0      0      2
  SPARCL1 WILD-TYPE     44     58     64     41
D1524V1, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPARCL1 MUTATED        3      0      1
  SPARCL1 WILD-TYPE     48     83     76
D1524V2, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPARCL1 MUTATED       15      0      0      0
  SPARCL1 WILD-TYPE    163    183    101     20
D1524V3, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPARCL1 MUTATED        4      0      7
  SPARCL1 WILD-TYPE     83     80     93
D1524V4, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               0                80
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPARCL1 MUTATED        2      4      6
  SPARCL1 WILD-TYPE     87    156    132
D1524V5, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPARCL1 MUTATED        6      5      1
  SPARCL1 WILD-TYPE    176    128     71
D1524V6, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPARCL1 MUTATED        0      6      4      5
  SPARCL1 WILD-TYPE    112     90     88    181
D1524V7, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               6                90
  CLUS_3               4                88
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPARCL1 MUTATED        1      1      6      1      1      0      5
  SPARCL1 WILD-TYPE     59     49     43     39     62    125     94
D1524V8, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               6                43
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPARCL1 MUTATED        5      2      0      8
  SPARCL1 WILD-TYPE    125     76     68    188
D1524V9, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPARCL1 MUTATED        1      2      1      0      8      0      1      0
  SPARCL1 WILD-TYPE     39     60     27     80     61     48     42     28
                   vv
clus                CLUS_9
  SPARCL1 MUTATED        2
  SPARCL1 WILD-TYPE     72
D1524V10, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPARCL1 MUTATED        1      0      0      4
  SPARCL1 WILD-TYPE     32     31     27     15
D1524V11, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPARCL1 MUTATED        2      0      3      0
  SPARCL1 WILD-TYPE     52     10     21     22
D1524V12, multiclass
        clus
vv       SPARCL1 MUTATED SPARCL1 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1525) Variable = NBPF14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF14 MUTATED        0      0      0      0
  NBPF14 WILD-TYPE     46     58     64     43
D1525V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF14 MUTATED        0      0      0
  NBPF14 WILD-TYPE     51     83     77
D1525V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF14 MUTATED        2      1      0      0
  NBPF14 WILD-TYPE    176    182    101     20
D1525V3, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF14 MUTATED        2      0      1
  NBPF14 WILD-TYPE     85     80     99
D1525V4, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF14 MUTATED        0      2      1
  NBPF14 WILD-TYPE     89    158    137
D1525V5, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF14 MUTATED        1      1      1
  NBPF14 WILD-TYPE    181    132     71
D1525V6, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF14 MUTATED        0      1      2      0
  NBPF14 WILD-TYPE    112     95     90    186
D1525V7, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF14 MUTATED        1      0      1      1      0      0      0
  NBPF14 WILD-TYPE     59     50     48     39     63    125     99
D1525V8, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF14 MUTATED        1      1      1      0
  NBPF14 WILD-TYPE    129     77     67    196
D1525V9, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NBPF14 MUTATED        0      1      0      0      0      1      1      0
  NBPF14 WILD-TYPE     40     61     28     80     69     47     42     28
                  vv
clus               CLUS_9
  NBPF14 MUTATED        0
  NBPF14 WILD-TYPE     74
D1525V10, multiclass
        clus
vv       NBPF14 MUTATED NBPF14 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF14 MUTATED        0      0      0      1
  NBPF14 WILD-TYPE     33     31     27     18
D1525V11, multiclass
[1] "Remove cluster labels:" "NBPF14 MUTATED"        
clus
  NBPF14 MUTATED NBPF14 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-G5-6641 
"NBPF14 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF14 MUTATED        1      0      0      0
  NBPF14 WILD-TYPE     53     10     24     22
D1525V12, multiclass
[1] "Remove cluster labels:" "NBPF14 MUTATED"        
clus
  NBPF14 MUTATED NBPF14 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" "NBPF14 WILD-TYPE" 
      TCGA-G5-6641 
"NBPF14 WILD-TYPE" 

Clustering(1526) Variable = SLC44A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A1 MUTATED        1      0      1      2
  SLC44A1 WILD-TYPE     45     58     63     41
D1526V1, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A1 MUTATED        1      1      2
  SLC44A1 WILD-TYPE     50     82     75
D1526V2, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A1 MUTATED        8      2      0      0
  SLC44A1 WILD-TYPE    170    181    101     20
D1526V3, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A1 MUTATED        3      0      3
  SLC44A1 WILD-TYPE     84     80     97
D1526V4, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A1 MUTATED        2      3      2
  SLC44A1 WILD-TYPE     87    157    136
D1526V5, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               3               157
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A1 MUTATED        4      3      0
  SLC44A1 WILD-TYPE    178    130     72
D1526V6, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A1 MUTATED        0      4      2      4
  SLC44A1 WILD-TYPE    112     92     90    182
D1526V7, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC44A1 MUTATED        1      3      2      0      1      2      1
  SLC44A1 WILD-TYPE     59     47     47     40     62    123     98
D1526V8, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A1 MUTATED        4      2      0      4
  SLC44A1 WILD-TYPE    126     76     68    192
D1526V9, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC44A1 MUTATED        2      1      0      3      3      0      0      0
  SLC44A1 WILD-TYPE     38     61     28     77     66     48     43     28
                   vv
clus                CLUS_9
  SLC44A1 MUTATED        1
  SLC44A1 WILD-TYPE     73
D1526V10, multiclass
        clus
vv       SLC44A1 MUTATED SLC44A1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               3                77
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A1 MUTATED        1      0      0      0
  SLC44A1 WILD-TYPE     32     31     27     19
D1526V11, multiclass
[1] "Remove cluster labels:" "SLC44A1 MUTATED"       
clus
  SLC44A1 MUTATED SLC44A1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-G5-6641 
"SLC44A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A1 MUTATED        1      0      0      0
  SLC44A1 WILD-TYPE     53     10     24     22
D1526V12, multiclass
[1] "Remove cluster labels:" "SLC44A1 MUTATED"       
clus
  SLC44A1 MUTATED SLC44A1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" "SLC44A1 WILD-TYPE" 
       TCGA-G5-6641 
"SLC44A1 WILD-TYPE" 

Clustering(1527) Variable = C14ORF105 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF105 MUTATED        1      0      0      1
  C14ORF105 WILD-TYPE     45     58     64     42
D1527V1, multiclass
[1] "Remove cluster labels:" "C14ORF105 MUTATED"     
clus
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3979 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3980          TCGA-AA-3982          TCGA-AA-3984 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-3994 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A017          TCGA-AA-A01D          TCGA-AA-A01F 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01I          TCGA-AA-A01K 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A024          TCGA-AA-A029 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AF-2689          TCGA-AF-2691 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3574          TCGA-AG-3575          TCGA-AG-3578 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3608          TCGA-AG-3609          TCGA-AG-3611 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3612          TCGA-AG-3726          TCGA-AG-3727 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3881          TCGA-AG-3882 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3883          TCGA-AG-3885          TCGA-AG-3887 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3890          TCGA-AG-3892          TCGA-AG-3893 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3896          TCGA-AG-3898 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-3909 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4005 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-4015 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF105 MUTATED        1      1      0
  C14ORF105 WILD-TYPE     50     82     77
D1527V2, multiclass
[1] "Remove cluster labels:" "C14ORF105 MUTATED"     
clus
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3979 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3980          TCGA-AA-3982          TCGA-AA-3984 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-3989          TCGA-AA-3994 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A017          TCGA-AA-A01D          TCGA-AA-A01F 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01I          TCGA-AA-A01K 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A024          TCGA-AA-A029 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AF-2689          TCGA-AF-2691 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3574          TCGA-AG-3575          TCGA-AG-3578 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3608          TCGA-AG-3609          TCGA-AG-3611 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3612          TCGA-AG-3726          TCGA-AG-3727 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3881          TCGA-AG-3882 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3883          TCGA-AG-3885          TCGA-AG-3887 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3890          TCGA-AG-3892          TCGA-AG-3893 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3896          TCGA-AG-3898 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-3909 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4005 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-4015 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF105 MUTATED        3      0      0      0
  C14ORF105 WILD-TYPE    175    183    101     20
D1527V3, multiclass
        clus
vv       C14ORF105 MUTATED C14ORF105 WILD-TYPE
  CLUS_1                 3                 175
  CLUS_2                 0                 183
  CLUS_3                 0                 101
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF105 MUTATED        1      0      0
  C14ORF105 WILD-TYPE     86     80    100
D1527V4, multiclass
[1] "Remove cluster labels:" "C14ORF105 MUTATED"     
clus
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  1                 266 
         TCGA-A6-2671          TCGA-A6-2677          TCGA-A6-3809 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3810          TCGA-A6-4105          TCGA-A6-5656 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5657          TCGA-A6-5659          TCGA-A6-5660 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5661          TCGA-A6-5662          TCGA-A6-5664 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5665          TCGA-A6-5666          TCGA-A6-6137 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6138          TCGA-A6-6141          TCGA-A6-6142 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6648          TCGA-A6-6649          TCGA-A6-6651 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6652          TCGA-A6-6653          TCGA-A6-6654 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6780          TCGA-A6-6781          TCGA-A6-6782 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3489          TCGA-AA-3492          TCGA-AA-3496 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3502          TCGA-AA-3510          TCGA-AA-3511 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3655          TCGA-AA-3660          TCGA-AA-3662 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3663          TCGA-AA-3697          TCGA-AA-3712 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3713          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AD-6888          TCGA-AD-6889          TCGA-AD-6890 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AD-6895          TCGA-AD-6899          TCGA-AD-6901 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AD-6963          TCGA-AD-6964          TCGA-AD-6965 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-2687          TCGA-AF-2693          TCGA-AF-4110 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-6136          TCGA-AF-6655          TCGA-AF-6672 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AG-3742 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A01W          TCGA-AG-A01Y          TCGA-AG-A020 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02N          TCGA-AG-A036 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AH-6544          TCGA-AH-6547          TCGA-AH-6549 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AH-6643          TCGA-AH-6644          TCGA-AU-3779 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AU-6004          TCGA-AY-5543          TCGA-AY-6196 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-6197          TCGA-AY-6386          TCGA-AZ-4315 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-4681 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-4682          TCGA-AZ-5403          TCGA-AZ-5407 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6599          TCGA-AZ-6600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6606          TCGA-AZ-6607          TCGA-AZ-6608 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-5254          TCGA-CA-5255          TCGA-CA-5796 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-5797          TCGA-CA-6715          TCGA-CA-6716 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-6717          TCGA-CA-6718          TCGA-CA-6719 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CI-6622          TCGA-CI-6624          TCGA-CK-4947 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-4948          TCGA-CK-4950          TCGA-CK-4952 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-5912          TCGA-CK-5913          TCGA-CK-5914 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-5915          TCGA-CK-5916          TCGA-CK-6746 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-6747          TCGA-CK-6748          TCGA-CK-6751 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CL-5917          TCGA-CL-5918          TCGA-CM-4743 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-4744          TCGA-CM-4746          TCGA-CM-4747 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-4752          TCGA-CM-5341          TCGA-CM-5344 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5348          TCGA-CM-5349          TCGA-CM-5860 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5861          TCGA-CM-5862          TCGA-CM-5863 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5864          TCGA-CM-5868          TCGA-CM-6161 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6162          TCGA-CM-6163          TCGA-CM-6164 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6165          TCGA-CM-6166          TCGA-CM-6167 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6168          TCGA-CM-6169          TCGA-CM-6170 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6171          TCGA-CM-6172          TCGA-CM-6674 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6675          TCGA-CM-6676          TCGA-CM-6677 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-5538          TCGA-D5-5539 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-5540          TCGA-D5-5541          TCGA-D5-6529 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6532          TCGA-D5-6533          TCGA-D5-6534 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6535          TCGA-D5-6536          TCGA-D5-6537 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6538          TCGA-D5-6539          TCGA-D5-6540 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6541          TCGA-D5-6898          TCGA-D5-6920 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6923          TCGA-D5-6924 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6926          TCGA-D5-6927          TCGA-D5-6929 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6930          TCGA-D5-6931          TCGA-D5-6932 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-7000          TCGA-DC-5337          TCGA-DC-5869 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6155          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6160          TCGA-DC-6681          TCGA-DC-6682 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0X9          TCGA-DM-A0XD 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A0XF          TCGA-DM-A1D0          TCGA-DM-A1D4 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1D6          TCGA-DM-A1D7          TCGA-DM-A1D8 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1DB 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A1HB          TCGA-DM-A282 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A285          TCGA-DM-A28C          TCGA-DM-A28E 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A28F          TCGA-DM-A28G          TCGA-DM-A28H 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A28K          TCGA-DT-5265          TCGA-DY-A0XA 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DF 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EF-5830 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-EI-6506          TCGA-EI-6507          TCGA-EI-6508 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-EI-6510          TCGA-F4-6459          TCGA-F4-6460 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6569          TCGA-F4-6570          TCGA-F4-6703 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6704          TCGA-F4-6805          TCGA-F4-6806 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6807          TCGA-F4-6808          TCGA-F4-6809 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6854          TCGA-F4-6855          TCGA-F4-6856 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6464          TCGA-F5-6465          TCGA-F5-6571 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6702          TCGA-F5-6811          TCGA-F5-6812 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6813          TCGA-G4-6293          TCGA-G4-6299 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6303          TCGA-G4-6304          TCGA-G4-6306 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6307          TCGA-G4-6309          TCGA-G4-6310 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6315          TCGA-G4-6317          TCGA-G4-6321 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6323          TCGA-G4-6586          TCGA-G4-6588 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G4-6626          TCGA-G4-6628 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G5-6235          TCGA-G5-6641 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF105 MUTATED        0      1      1
  C14ORF105 WILD-TYPE     89    159    137
D1527V5, multiclass
[1] "Remove cluster labels:" "C14ORF105 MUTATED"     
clus
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  2                 385 
         TCGA-A6-2671          TCGA-A6-2672          TCGA-A6-2676 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3810          TCGA-A6-5656          TCGA-A6-5657 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5659          TCGA-A6-5660          TCGA-A6-5661 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5662          TCGA-A6-5664          TCGA-A6-5665 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5666          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6648 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6649          TCGA-A6-6651          TCGA-A6-6652 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6653          TCGA-A6-6654          TCGA-A6-6780 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3492          TCGA-AA-3496          TCGA-AA-3502 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3510          TCGA-AA-3511          TCGA-AA-3514 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3519          TCGA-AA-3520 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3521          TCGA-AA-3522          TCGA-AA-3525 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3529          TCGA-AA-3530          TCGA-AA-3531 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3532          TCGA-AA-3534          TCGA-AA-3548 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3558          TCGA-AA-3560 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3561          TCGA-AA-3562          TCGA-AA-3655 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3672          TCGA-AA-3678 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3681          TCGA-AA-3688          TCGA-AA-3695 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3696          TCGA-AA-3697          TCGA-AA-3710 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3712          TCGA-AA-3713          TCGA-AA-3715 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3811          TCGA-AA-3812          TCGA-AA-3814 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3815          TCGA-AA-3818          TCGA-AA-3819 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3844          TCGA-AA-3845          TCGA-AA-3848 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3850          TCGA-AA-3852          TCGA-AA-3854 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3856          TCGA-AA-3861          TCGA-AA-3864 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3869          TCGA-AA-3872 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3930          TCGA-AA-3947          TCGA-AA-3950 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3955          TCGA-AA-3968          TCGA-AA-3971 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3972          TCGA-AA-3973          TCGA-AA-3975 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3982          TCGA-AA-3986          TCGA-AA-3989 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00E 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00F          TCGA-AA-A00J          TCGA-AA-A00K 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00L          TCGA-AA-A00N          TCGA-AA-A00Q 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A017          TCGA-AA-A01D 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01I          TCGA-AA-A01K 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01P          TCGA-AA-A01Q          TCGA-AA-A01R 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01S          TCGA-AA-A01T          TCGA-AA-A01V 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01X          TCGA-AA-A022          TCGA-AA-A024 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02K          TCGA-AA-A02O 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6899          TCGA-AD-6965 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-3400          TCGA-AF-3913 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-5654          TCGA-AF-6136          TCGA-AF-6655 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-6672          TCGA-AG-3574          TCGA-AG-3578 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3612          TCGA-AG-3727 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3742          TCGA-AG-3878 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3885 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3896          TCGA-AG-3898 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-4001 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A002          TCGA-AG-A008 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01W          TCGA-AG-A01Y 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A026          TCGA-AG-A02G 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A036 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AH-6544          TCGA-AH-6547          TCGA-AH-6549 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AH-6643          TCGA-AH-6644          TCGA-AU-6004 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-5543          TCGA-AY-6196          TCGA-AY-6197 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-6386          TCGA-AZ-4315          TCGA-AZ-4323 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-4616          TCGA-AZ-4682          TCGA-AZ-5407 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6599          TCGA-AZ-6600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6606          TCGA-AZ-6607          TCGA-AZ-6608 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-5254          TCGA-CA-5255          TCGA-CA-5796 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-5797          TCGA-CA-6715          TCGA-CA-6716 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-6717          TCGA-CA-6718          TCGA-CA-6719 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CI-6621          TCGA-CK-5914          TCGA-CK-5916 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-6746          TCGA-CK-6747          TCGA-CK-6748 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-6751          TCGA-CL-5918          TCGA-CM-4743 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-4744          TCGA-CM-4746          TCGA-CM-4747 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-4752          TCGA-CM-5341          TCGA-CM-5344 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5348          TCGA-CM-5349          TCGA-CM-5860 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5861          TCGA-CM-5862          TCGA-CM-5863 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5864          TCGA-CM-5868          TCGA-CM-6161 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6162          TCGA-CM-6163          TCGA-CM-6164 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6165          TCGA-CM-6166          TCGA-CM-6167 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6168          TCGA-CM-6169          TCGA-CM-6170 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6171          TCGA-CM-6172          TCGA-CM-6674 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6675          TCGA-CM-6676          TCGA-CM-6677 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-5538          TCGA-D5-5539          TCGA-D5-5540 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-5541          TCGA-D5-6529          TCGA-D5-6532 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6535 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6537          TCGA-D5-6538 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6539          TCGA-D5-6540          TCGA-D5-6541 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6898          TCGA-D5-6920          TCGA-D5-6922 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6923          TCGA-D5-6924          TCGA-D5-6926 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6927          TCGA-D5-6930          TCGA-D5-6931 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6932          TCGA-DC-5337          TCGA-DC-5869 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6155          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6160          TCGA-DC-6681          TCGA-DC-6682 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0X9          TCGA-DM-A0XF 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D4          TCGA-DM-A1D6 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1DB          TCGA-DM-A1HA 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1HB          TCGA-DM-A282          TCGA-DM-A28C 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A28E          TCGA-DM-A28F          TCGA-DM-A28G 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DT-5265          TCGA-DY-A0XA          TCGA-DY-A1DC 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DF          TCGA-DY-A1DG 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EF-5830          TCGA-EI-6506 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-EI-6507          TCGA-EI-6508          TCGA-EI-6510 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6703          TCGA-F4-6704 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6806          TCGA-F4-6807 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F4-6854 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6855          TCGA-F4-6856          TCGA-F5-6464 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-F5-6813 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6293          TCGA-G4-6299          TCGA-G4-6303 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6304          TCGA-G4-6306          TCGA-G4-6307 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6309          TCGA-G4-6310          TCGA-G4-6315 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6317          TCGA-G4-6321          TCGA-G4-6323 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6586          TCGA-G4-6588          TCGA-G4-6625 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6626          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF105 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF105 MUTATED        1      1      0
  C14ORF105 WILD-TYPE    181    132     72
D1527V6, multiclass
[1] "Remove cluster labels:" "C14ORF105 MUTATED"     
clus
  C14ORF105 MUTATED C14ORF105 WILD-TYPE 
                  2                 385 
         TCGA-A6-2671          TCGA-A6-2672          TCGA-A6-2676 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-3810          TCGA-A6-5656          TCGA-A6-5657 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5659          TCGA-A6-5660          TCGA-A6-5661 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5662          TCGA-A6-5664          TCGA-A6-5665 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-5666          TCGA-A6-6137          TCGA-A6-6138 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6648 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6649          TCGA-A6-6651          TCGA-A6-6652 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6653          TCGA-A6-6654          TCGA-A6-6780 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3492          TCGA-AA-3496          TCGA-AA-3502 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3510          TCGA-AA-3511          TCGA-AA-3514 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3519          TCGA-AA-3520 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3521          TCGA-AA-3522          TCGA-AA-3525 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3529          TCGA-AA-3530          TCGA-AA-3531 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3532          TCGA-AA-3534          TCGA-AA-3548 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3558          TCGA-AA-3560 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3561          TCGA-AA-3562          TCGA-AA-3655 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3672          TCGA-AA-3678 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3681          TCGA-AA-3688          TCGA-AA-3695 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3696          TCGA-AA-3697          TCGA-AA-3710 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3712          TCGA-AA-3713          TCGA-AA-3715 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3811          TCGA-AA-3812          TCGA-AA-3814 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3815          TCGA-AA-3818          TCGA-AA-3819 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3844          TCGA-AA-3845          TCGA-AA-3848 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3850          TCGA-AA-3852          TCGA-AA-3854 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3856          TCGA-AA-3861          TCGA-AA-3864 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3869          TCGA-AA-3872 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3930          TCGA-AA-3947          TCGA-AA-3950 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3955          TCGA-AA-3968          TCGA-AA-3971 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3972          TCGA-AA-3973          TCGA-AA-3975 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-3982          TCGA-AA-3986          TCGA-AA-3989 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00E 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00F          TCGA-AA-A00J          TCGA-AA-A00K 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00L          TCGA-AA-A00N          TCGA-AA-A00Q 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A017          TCGA-AA-A01D 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01I          TCGA-AA-A01K 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01P          TCGA-AA-A01Q          TCGA-AA-A01R 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01S          TCGA-AA-A01T          TCGA-AA-A01V 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A01X          TCGA-AA-A022          TCGA-AA-A024 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A029          TCGA-AA-A02F          TCGA-AA-A02H 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02J          TCGA-AA-A02K          TCGA-AA-A02O 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AD-5900          TCGA-AD-6548 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6899          TCGA-AD-6965 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-3400          TCGA-AF-3913 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-5654          TCGA-AF-6136          TCGA-AF-6655 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AF-6672          TCGA-AG-3574          TCGA-AG-3578 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3580          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3584          TCGA-AG-3586 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3593          TCGA-AG-3594 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3598          TCGA-AG-3599          TCGA-AG-3600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3601          TCGA-AG-3602          TCGA-AG-3605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3612          TCGA-AG-3727 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3742          TCGA-AG-3878 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3885 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3896          TCGA-AG-3898 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-3901          TCGA-AG-3902          TCGA-AG-4001 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A002          TCGA-AG-A008 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01W          TCGA-AG-A01Y 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A026          TCGA-AG-A02G 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A036 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AH-6544          TCGA-AH-6547          TCGA-AH-6549 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AH-6643          TCGA-AH-6644          TCGA-AU-6004 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-5543          TCGA-AY-6196          TCGA-AY-6197 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AY-6386          TCGA-AZ-4315          TCGA-AZ-4323 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-4616          TCGA-AZ-4682          TCGA-AZ-5407 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6599          TCGA-AZ-6600 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-AZ-6606          TCGA-AZ-6607          TCGA-AZ-6608 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-5254          TCGA-CA-5255          TCGA-CA-5796 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-5797          TCGA-CA-6715          TCGA-CA-6716 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CA-6717          TCGA-CA-6718          TCGA-CA-6719 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CI-6621          TCGA-CK-5914          TCGA-CK-5916 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-6746          TCGA-CK-6747          TCGA-CK-6748 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CK-6751          TCGA-CL-5918          TCGA-CM-4743 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-4744          TCGA-CM-4746          TCGA-CM-4747 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-4752          TCGA-CM-5341          TCGA-CM-5344 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5348          TCGA-CM-5349          TCGA-CM-5860 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5861          TCGA-CM-5862          TCGA-CM-5863 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-5864          TCGA-CM-5868          TCGA-CM-6161 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6162          TCGA-CM-6163          TCGA-CM-6164 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6165          TCGA-CM-6166          TCGA-CM-6167 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6168          TCGA-CM-6169          TCGA-CM-6170 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6171          TCGA-CM-6172          TCGA-CM-6674 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6675          TCGA-CM-6676          TCGA-CM-6677 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-5538          TCGA-D5-5539          TCGA-D5-5540 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-5541          TCGA-D5-6529          TCGA-D5-6532 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6535 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6537          TCGA-D5-6538 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6539          TCGA-D5-6540          TCGA-D5-6541 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6898          TCGA-D5-6920          TCGA-D5-6922 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6923          TCGA-D5-6924          TCGA-D5-6926 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6927          TCGA-D5-6930          TCGA-D5-6931 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-D5-6932          TCGA-DC-5337          TCGA-DC-5869 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6155          TCGA-DC-6157          TCGA-DC-6158 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6160          TCGA-DC-6681          TCGA-DC-6682 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0X9          TCGA-DM-A0XF 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D4          TCGA-DM-A1D6 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1D7          TCGA-DM-A1D8          TCGA-DM-A1D9 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1DA          TCGA-DM-A1DB          TCGA-DM-A1HA 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A1HB          TCGA-DM-A282          TCGA-DM-A28C 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DM-A28E          TCGA-DM-A28F          TCGA-DM-A28G 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DT-5265          TCGA-DY-A0XA          TCGA-DY-A1DC 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DY-A1DD          TCGA-DY-A1DF          TCGA-DY-A1DG 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EF-5830          TCGA-EI-6506 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-EI-6507          TCGA-EI-6508          TCGA-EI-6510 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6703          TCGA-F4-6704 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6806          TCGA-F4-6807 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6808          TCGA-F4-6809          TCGA-F4-6854 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F4-6855          TCGA-F4-6856          TCGA-F5-6464 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6465          TCGA-F5-6571          TCGA-F5-6702 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-F5-6811          TCGA-F5-6812          TCGA-F5-6813 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6293          TCGA-G4-6299          TCGA-G4-6303 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6304          TCGA-G4-6306          TCGA-G4-6307 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6309          TCGA-G4-6310          TCGA-G4-6315 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6317          TCGA-G4-6321          TCGA-G4-6323 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6586          TCGA-G4-6588          TCGA-G4-6625 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G4-6626          TCGA-G4-6628          TCGA-G5-6235 
"C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" "C14ORF105 WILD-TYPE" 
         TCGA-G5-6641 
"C14ORF105 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF105 MUTATED        0      0      1      2
  C14ORF105 WILD-TYPE    112     96     91    184
D1527V7, multiclass
        clus
vv       C14ORF105 MUTATED C14ORF105 WILD-TYPE
  CLUS_1                 0                 112
  CLUS_2                 0                  96
  CLUS_3                 1                  91
  CLUS_4                 2                 184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF105 MUTATED        0      0      1      0      0      0      2
  C14ORF105 WILD-TYPE     60     50     48     40     63    125     97
D1527V8, multiclass
        clus
vv       C14ORF105 MUTATED C14ORF105 WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 0                  50
  CLUS_3                 1                  48
  CLUS_4                 0                  40
  CLUS_5                 0                  63
  CLUS_6                 0                 125
  CLUS_7                 2                  97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF105 MUTATED        0      1      0      2
  C14ORF105 WILD-TYPE    130     77     68    194
D1527V9, multiclass
        clus
vv       C14ORF105 MUTATED C14ORF105 WILD-TYPE
  CLUS_1                 0                 130
  CLUS_2                 1                  77
  CLUS_3                 0                  68
  CLUS_4                 2                 194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF105 MUTATED        0      1      1      0      1      0      0      0
  C14ORF105 WILD-TYPE     40     61     27     80     68     48     43     28
                     vv
clus                  CLUS_9
  C14ORF105 MUTATED        0
  C14ORF105 WILD-TYPE     74
D1527V10, multiclass
        clus
vv       C14ORF105 MUTATED C14ORF105 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 1                  61
  CLUS_3                 1                  27
  CLUS_4                 0                  80
  CLUS_5                 1                  68
  CLUS_6                 0                  48
  CLUS_7                 0                  43
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF105 MUTATED        0      0      0      0
  C14ORF105 WILD-TYPE     33     31     27     19
D1527V11, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF105 MUTATED        0      0      0      0
  C14ORF105 WILD-TYPE     54     10     24     22
D1527V12, multiclass

Clustering(1528) Variable = CCDC141 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC141 MUTATED        1      0      1      5
  CCDC141 WILD-TYPE     45     58     63     38
D1528V1, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC141 MUTATED        4      2      1
  CCDC141 WILD-TYPE     47     81     76
D1528V2, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC141 MUTATED       13      5      5      0
  CCDC141 WILD-TYPE    165    178     96     20
D1528V3, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               5               178
  CLUS_3               5                96
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC141 MUTATED        6      5      4
  CCDC141 WILD-TYPE     81     75     96
D1528V4, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               5                75
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC141 MUTATED        3      8      7
  CCDC141 WILD-TYPE     86    152    131
D1528V5, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               8               152
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC141 MUTATED        8      7      3
  CCDC141 WILD-TYPE    174    126     69
D1528V6, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               7               126
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC141 MUTATED        5      3      6      9
  CCDC141 WILD-TYPE    107     93     86    177
D1528V7, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               5               107
  CLUS_2               3                93
  CLUS_3               6                86
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC141 MUTATED        6      4      2      0      3      1      7
  CCDC141 WILD-TYPE     54     46     47     40     60    124     92
D1528V8, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               6                54
  CLUS_2               4                46
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               1               124
  CLUS_7               7                92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC141 MUTATED        9      4      1      8
  CCDC141 WILD-TYPE    121     74     67    188
D1528V9, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC141 MUTATED        1      2      3      2      5      3      1      1
  CCDC141 WILD-TYPE     39     60     25     78     64     45     42     27
                   vv
clus                CLUS_9
  CCDC141 MUTATED        4
  CCDC141 WILD-TYPE     70
D1528V10, multiclass
        clus
vv       CCDC141 MUTATED CCDC141 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               3                45
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC141 MUTATED        0      1      0      1
  CCDC141 WILD-TYPE     33     30     27     18
D1528V11, multiclass
[1] "Remove cluster labels:" "CCDC141 MUTATED"       
clus
  CCDC141 MUTATED CCDC141 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6460 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC141 MUTATED        1      1      0      0
  CCDC141 WILD-TYPE     53      9     24     22
D1528V12, multiclass
[1] "Remove cluster labels:" "CCDC141 MUTATED"       
clus
  CCDC141 MUTATED CCDC141 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6460 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" "CCDC141 WILD-TYPE" 

Clustering(1529) Variable = SSX2IP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSX2IP MUTATED        0      0      0      3
  SSX2IP WILD-TYPE     46     58     64     40
D1529V1, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SSX2IP MUTATED        0      1      2
  SSX2IP WILD-TYPE     51     82     75
D1529V2, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              0               51
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSX2IP MUTATED        6      2      1      0
  SSX2IP WILD-TYPE    172    181    100     20
D1529V3, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SSX2IP MUTATED        2      0      3
  SSX2IP WILD-TYPE     85     80     97
D1529V4, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SSX2IP MUTATED        2      3      3
  SSX2IP WILD-TYPE     87    157    135
D1529V5, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SSX2IP MUTATED        3      4      1
  SSX2IP WILD-TYPE    179    129     71
D1529V6, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              3              179
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSX2IP MUTATED        1      2      2      3
  SSX2IP WILD-TYPE    111     94     90    183
D1529V7, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSX2IP MUTATED        1      3      1      1      0      0      2
  SSX2IP WILD-TYPE     59     47     48     39     63    125     97
D1529V8, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSX2IP MUTATED        2      2      0      5
  SSX2IP WILD-TYPE    128     76     68    191
D1529V9, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SSX2IP MUTATED        1      3      1      0      3      0      0      0
  SSX2IP WILD-TYPE     39     59     27     80     66     48     43     28
                  vv
clus               CLUS_9
  SSX2IP MUTATED        1
  SSX2IP WILD-TYPE     73
D1529V10, multiclass
        clus
vv       SSX2IP MUTATED SSX2IP WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSX2IP MUTATED        1      1      0      0
  SSX2IP WILD-TYPE     32     30     27     19
D1529V11, multiclass
[1] "Remove cluster labels:" "SSX2IP MUTATED"        
clus
  SSX2IP MUTATED SSX2IP WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSX2IP MUTATED        2      0      0      0
  SSX2IP WILD-TYPE     52     10     24     22
D1529V12, multiclass
[1] "Remove cluster labels:" "SSX2IP MUTATED"        
clus
  SSX2IP MUTATED SSX2IP WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" "SSX2IP WILD-TYPE" 

Clustering(1530) Variable = CSPP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSPP1 MUTATED        3      0      0      2
  CSPP1 WILD-TYPE     43     58     64     41
D1530V1, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSPP1 MUTATED        2      2      1
  CSPP1 WILD-TYPE     49     81     76
D1530V2, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSPP1 MUTATED       12      4      1      1
  CSPP1 WILD-TYPE    166    179    100     19
D1530V3, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSPP1 MUTATED        5      2      6
  CSPP1 WILD-TYPE     82     78     94
D1530V4, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSPP1 MUTATED        1      5      8
  CSPP1 WILD-TYPE     88    155    130
D1530V5, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSPP1 MUTATED        8      5      1
  CSPP1 WILD-TYPE    174    128     71
D1530V6, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSPP1 MUTATED        3      5      5      5
  CSPP1 WILD-TYPE    109     91     87    181
D1530V7, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSPP1 MUTATED        4      2      4      0      3      1      4
  CSPP1 WILD-TYPE     56     48     45     40     60    124     95
D1530V8, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSPP1 MUTATED        5      3      2      8
  CSPP1 WILD-TYPE    125     75     66    188
D1530V9, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSPP1 MUTATED        1      4      1      2      7      0      2      0
  CSPP1 WILD-TYPE     39     58     27     78     62     48     41     28
                 vv
clus              CLUS_9
  CSPP1 MUTATED        1
  CSPP1 WILD-TYPE     73
D1530V10, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSPP1 MUTATED        2      1      1      2
  CSPP1 WILD-TYPE     31     30     26     17
D1530V11, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSPP1 MUTATED        3      1      1      1
  CSPP1 WILD-TYPE     51      9     23     21
D1530V12, multiclass
        clus
vv       CSPP1 MUTATED CSPP1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1531) Variable = CDS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDS2 MUTATED        1      0      0      3
  CDS2 WILD-TYPE     45     58     64     40
D1531V1, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDS2 MUTATED        3      1      0
  CDS2 WILD-TYPE     48     82     77
D1531V2, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDS2 MUTATED        8      2      0      0
  CDS2 WILD-TYPE    170    181    101     20
D1531V3, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDS2 MUTATED        0      1      5
  CDS2 WILD-TYPE     87     79     95
D1531V4, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDS2 MUTATED        1      6      3
  CDS2 WILD-TYPE     88    154    135
D1531V5, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDS2 MUTATED        5      3      2
  CDS2 WILD-TYPE    177    130     70
D1531V6, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDS2 MUTATED        2      3      2      3
  CDS2 WILD-TYPE    110     93     90    183
D1531V7, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDS2 MUTATED        1      0      4      0      1      0      4
  CDS2 WILD-TYPE     59     50     45     40     62    125     95
D1531V8, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDS2 MUTATED        3      1      0      6
  CDS2 WILD-TYPE    127     77     68    190
D1531V9, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CDS2 MUTATED        0      2      1      0      5      1      1      0      0
  CDS2 WILD-TYPE     40     60     27     80     64     47     42     28     74
D1531V10, multiclass
        clus
vv       CDS2 MUTATED CDS2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDS2 MUTATED        0      0      0      1
  CDS2 WILD-TYPE     33     31     27     18
D1531V11, multiclass
[1] "Remove cluster labels:" "CDS2 MUTATED"          
clus
  CDS2 MUTATED CDS2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-G5-6641 
"CDS2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDS2 MUTATED        1      0      0      0
  CDS2 WILD-TYPE     53     10     24     22
D1531V12, multiclass
[1] "Remove cluster labels:" "CDS2 MUTATED"          
clus
  CDS2 MUTATED CDS2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" "CDS2 WILD-TYPE" 
    TCGA-G5-6641 
"CDS2 WILD-TYPE" 

Clustering(1532) Variable = EPHA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA4 MUTATED        4      1      0      2
  EPHA4 WILD-TYPE     42     57     64     41
D1532V1, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA4 MUTATED        5      1      1
  EPHA4 WILD-TYPE     46     82     76
D1532V2, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA4 MUTATED       18      2      2      2
  EPHA4 WILD-TYPE    160    181     99     18
D1532V3, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA4 MUTATED        3      3     11
  EPHA4 WILD-TYPE     84     77     89
D1532V4, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3            11              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA4 MUTATED        3     12      7
  EPHA4 WILD-TYPE     86    148    131
D1532V5, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            12             148
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA4 MUTATED       11      8      3
  EPHA4 WILD-TYPE    171    125     69
D1532V6, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA4 MUTATED        5      7      5      8
  EPHA4 WILD-TYPE    107     89     87    178
D1532V7, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             7              89
  CLUS_3             5              87
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA4 MUTATED        3      3      9      1      2      1      6
  EPHA4 WILD-TYPE     57     47     40     39     61    124     93
D1532V8, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA4 MUTATED       12      2      0     11
  EPHA4 WILD-TYPE    118     76     68    185
D1532V9, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHA4 MUTATED        3      3      0      2     11      3      1      0
  EPHA4 WILD-TYPE     37     59     28     78     58     45     42     28
                 vv
clus              CLUS_9
  EPHA4 MUTATED        2
  EPHA4 WILD-TYPE     72
D1532V10, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5            11              58
  CLUS_6             3              45
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA4 MUTATED        2      1      1      3
  EPHA4 WILD-TYPE     31     30     26     16
D1532V11, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA4 MUTATED        1      1      3      2
  EPHA4 WILD-TYPE     53      9     21     20
D1532V12, multiclass
        clus
vv       EPHA4 MUTATED EPHA4 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1533) Variable = TMEM195 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM195 MUTATED        0      1      0      3
  TMEM195 WILD-TYPE     46     57     64     40
D1533V1, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM195 MUTATED        0      2      2
  TMEM195 WILD-TYPE     51     81     75
D1533V2, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM195 MUTATED        8      1      0      0
  TMEM195 WILD-TYPE    170    182    101     20
D1533V3, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM195 MUTATED        2      0      3
  TMEM195 WILD-TYPE     85     80     97
D1533V4, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM195 MUTATED        1      3      3
  TMEM195 WILD-TYPE     88    157    135
D1533V5, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM195 MUTATED        3      4      0
  TMEM195 WILD-TYPE    179    129     72
D1533V6, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM195 MUTATED        0      2      2      5
  TMEM195 WILD-TYPE    112     94     90    181
D1533V7, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM195 MUTATED        1      1      2      0      1      0      4
  TMEM195 WILD-TYPE     59     49     47     40     62    125     95
D1533V8, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM195 MUTATED        1      1      0      7
  TMEM195 WILD-TYPE    129     77     68    189
D1533V9, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM195 MUTATED        0      1      2      1      4      0      0      0
  TMEM195 WILD-TYPE     40     61     26     79     65     48     43     28
                   vv
clus                CLUS_9
  TMEM195 MUTATED        1
  TMEM195 WILD-TYPE     73
D1533V10, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM195 MUTATED        0      0      0      2
  TMEM195 WILD-TYPE     33     31     27     17
D1533V11, multiclass
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM195 MUTATED        1      0      1      0
  TMEM195 WILD-TYPE     53     10     23     22
D1533V12, multiclass
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6654 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 

Clustering(1534) Variable = AGT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGT MUTATED        1      0      0      2
  AGT WILD-TYPE     45     58     64     41
D1534V1, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AGT MUTATED        2      0      1
  AGT WILD-TYPE     49     83     76
D1534V2, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           2            49
  CLUS_2           0            83
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGT MUTATED       10      0      0      0
  AGT WILD-TYPE    168    183    101     20
D1534V3, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1          10           168
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AGT MUTATED        3      0      3
  AGT WILD-TYPE     84     80     97
D1534V4, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           3            84
  CLUS_2           0            80
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AGT MUTATED        5      2      2
  AGT WILD-TYPE     84    158    136
D1534V5, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           5            84
  CLUS_2           2           158
  CLUS_3           2           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AGT MUTATED        3      4      2
  AGT WILD-TYPE    179    129     70
D1534V6, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           3           179
  CLUS_2           4           129
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGT MUTATED        1      4      1      4
  AGT WILD-TYPE    111     92     91    182
D1534V7, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           1           111
  CLUS_2           4            92
  CLUS_3           1            91
  CLUS_4           4           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGT MUTATED        1      2      3      0      1      0      3
  AGT WILD-TYPE     59     48     46     40     62    125     96
D1534V8, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGT MUTATED        2      2      0      6
  AGT WILD-TYPE    128     76     68    190
D1534V9, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           2           128
  CLUS_2           2            76
  CLUS_3           0            68
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AGT MUTATED        0      2      0      1      5      0      0      1      1
  AGT WILD-TYPE     40     60     28     79     64     48     43     27     73
D1534V10, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           0            40
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           1            79
  CLUS_5           5            64
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           1            27
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGT MUTATED        0      1      0      2
  AGT WILD-TYPE     33     30     27     17
D1534V11, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           0            33
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGT MUTATED        1      1      1      0
  AGT WILD-TYPE     53      9     23     22
D1534V12, multiclass
        clus
vv       AGT MUTATED AGT WILD-TYPE
  CLUS_1           1            53
  CLUS_2           1             9
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1535) Variable = ARHGEF11 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        6      2      0      3
  ARHGEF11 WILD-TYPE     40     56     64     40
D1535V1, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                6                 40
  CLUS_2                2                 56
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF11 MUTATED        6      3      2
  ARHGEF11 WILD-TYPE     45     80     75
D1535V2, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                6                 45
  CLUS_2                3                 80
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED       16      3      3      1
  ARHGEF11 WILD-TYPE    162    180     98     19
D1535V3, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1               16                162
  CLUS_2                3                180
  CLUS_3                3                 98
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF11 MUTATED        4      2      6
  ARHGEF11 WILD-TYPE     83     78     94
D1535V4, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                2                 78
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF11 MUTATED        2      8      9
  ARHGEF11 WILD-TYPE     87    152    129
D1535V5, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                8                152
  CLUS_3                9                129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF11 MUTATED       10      6      3
  ARHGEF11 WILD-TYPE    172    127     69
D1535V6, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1               10                172
  CLUS_2                6                127
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        3      6      5      9
  ARHGEF11 WILD-TYPE    109     90     87    177
D1535V7, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                6                 90
  CLUS_3                5                 87
  CLUS_4                9                177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF11 MUTATED        2      0      6      3      2      3      7
  ARHGEF11 WILD-TYPE     58     50     43     37     61    122     92
D1535V8, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                6                 43
  CLUS_4                3                 37
  CLUS_5                2                 61
  CLUS_6                3                122
  CLUS_7                7                 92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        7      3      1     12
  ARHGEF11 WILD-TYPE    123     75     67    184
D1535V9, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4               12                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGEF11 MUTATED        2      3      1      3      8      1      4      1
  ARHGEF11 WILD-TYPE     38     59     27     77     61     47     39     27
                    vv
clus                 CLUS_9
  ARHGEF11 MUTATED        0
  ARHGEF11 WILD-TYPE     74
D1535V10, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                3                 77
  CLUS_5                8                 61
  CLUS_6                1                 47
  CLUS_7                4                 39
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        2      1      0      3
  ARHGEF11 WILD-TYPE     31     30     27     16
D1535V11, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        4      0      1      1
  ARHGEF11 WILD-TYPE     50     10     23     21
D1535V12, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1536) Variable = MRPS22 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS22 MUTATED        1      0      0      1
  MRPS22 WILD-TYPE     45     58     64     42
D1536V1, multiclass
[1] "Remove cluster labels:" "MRPS22 MUTATED"        
clus
  MRPS22 MUTATED MRPS22 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AY-4071 
"MRPS22 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPS22 MUTATED        1      1      0
  MRPS22 WILD-TYPE     50     82     77
D1536V2, multiclass
[1] "Remove cluster labels:" "MRPS22 MUTATED"        
clus
  MRPS22 MUTATED MRPS22 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AY-4071 
"MRPS22 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS22 MUTATED        6      2      2      0
  MRPS22 WILD-TYPE    172    181     99     20
D1536V3, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPS22 MUTATED        1      3      4
  MRPS22 WILD-TYPE     86     77     96
D1536V4, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPS22 MUTATED        0      4      5
  MRPS22 WILD-TYPE     89    156    133
D1536V5, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPS22 MUTATED        6      3      0
  MRPS22 WILD-TYPE    176    130     72
D1536V6, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS22 MUTATED        3      4      1      2
  MRPS22 WILD-TYPE    109     92     91    184
D1536V7, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPS22 MUTATED        2      1      4      0      1      0      2
  MRPS22 WILD-TYPE     58     49     45     40     62    125     97
D1536V8, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS22 MUTATED        5      1      2      2
  MRPS22 WILD-TYPE    125     77     66    194
D1536V9, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRPS22 MUTATED        2      1      1      0      4      0      2      0
  MRPS22 WILD-TYPE     38     61     27     80     65     48     41     28
                  vv
clus               CLUS_9
  MRPS22 MUTATED        0
  MRPS22 WILD-TYPE     74
D1536V10, multiclass
        clus
vv       MRPS22 MUTATED MRPS22 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS22 MUTATED        1      0      0      0
  MRPS22 WILD-TYPE     32     31     27     19
D1536V11, multiclass
[1] "Remove cluster labels:" "MRPS22 MUTATED"        
clus
  MRPS22 MUTATED MRPS22 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-G5-6641 
"MRPS22 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS22 MUTATED        1      0      0      0
  MRPS22 WILD-TYPE     53     10     24     22
D1536V12, multiclass
[1] "Remove cluster labels:" "MRPS22 MUTATED"        
clus
  MRPS22 MUTATED MRPS22 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" "MRPS22 WILD-TYPE" 
      TCGA-G5-6641 
"MRPS22 WILD-TYPE" 

Clustering(1537) Variable = TMEM229B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM229B MUTATED        0      0      0      0
  TMEM229B WILD-TYPE     46     58     64     43
D1537V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM229B MUTATED        0      0      0
  TMEM229B WILD-TYPE     51     83     77
D1537V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM229B MUTATED        3      0      1      0
  TMEM229B WILD-TYPE    175    183    100     20
D1537V3, multiclass
        clus
vv       TMEM229B MUTATED TMEM229B WILD-TYPE
  CLUS_1                3                175
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM229B MUTATED        1      1      2
  TMEM229B WILD-TYPE     86     79     98
D1537V4, multiclass
        clus
vv       TMEM229B MUTATED TMEM229B WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM229B MUTATED        0      2      0
  TMEM229B WILD-TYPE     89    158    138
D1537V5, multiclass
[1] "Remove cluster labels:" "TMEM229B MUTATED"      
clus
  TMEM229B MUTATED TMEM229B WILD-TYPE 
                 2                385 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3510         TCGA-AA-3511         TCGA-AA-3514 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3655 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3672         TCGA-AA-3678 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3688         TCGA-AA-3695 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3697         TCGA-AA-3710 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3712         TCGA-AA-3713         TCGA-AA-3715 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3812         TCGA-AA-3814 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3815         TCGA-AA-3818         TCGA-AA-3819 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3848 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3852         TCGA-AA-3854 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3861         TCGA-AA-3864 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3869         TCGA-AA-3872 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3947         TCGA-AA-3950 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3968         TCGA-AA-3971 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3986         TCGA-AA-3989 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00E 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00Q 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01I 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A022 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02K 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AD-5900 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AD-6548         TCGA-AD-6889         TCGA-AD-6899 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2689         TCGA-AF-3400 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AF-3913         TCGA-AF-5654         TCGA-AF-6136 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3609         TCGA-AG-3612 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3731         TCGA-AG-3742 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3893         TCGA-AG-3896 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A002 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01W 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A026 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A036         TCGA-AH-6544         TCGA-AH-6547 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AH-6644 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4682 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-5407         TCGA-AZ-6598         TCGA-AZ-6599 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6606         TCGA-AZ-6607 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-6608         TCGA-CA-5254         TCGA-CA-5255 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CA-5796         TCGA-CA-5797         TCGA-CA-6715 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CA-6716         TCGA-CA-6717         TCGA-CA-6718 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6621         TCGA-CK-5914 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6746         TCGA-CK-6747 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CK-6748         TCGA-CK-6751         TCGA-CL-5918 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-4743         TCGA-CM-4744         TCGA-CM-4747 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-4752         TCGA-CM-5341         TCGA-CM-5348 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-5349         TCGA-CM-5860         TCGA-CM-5861 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-5862         TCGA-CM-5863         TCGA-CM-5864 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-5868         TCGA-CM-6161         TCGA-CM-6162 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6163         TCGA-CM-6164         TCGA-CM-6165 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6166         TCGA-CM-6167         TCGA-CM-6168 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6169         TCGA-CM-6170         TCGA-CM-6171 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6172         TCGA-CM-6674         TCGA-CM-6675 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5538 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6930         TCGA-D5-6931 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6932         TCGA-DC-5337         TCGA-DC-5869 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XF 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A28C 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A28E         TCGA-DM-A28F         TCGA-DM-A28G 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G5-6641 
"TMEM229B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM229B MUTATED        0      1      1
  TMEM229B WILD-TYPE    182    132     71
D1537V6, multiclass
[1] "Remove cluster labels:" "TMEM229B MUTATED"      
clus
  TMEM229B MUTATED TMEM229B WILD-TYPE 
                 2                385 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3510         TCGA-AA-3511         TCGA-AA-3514 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3655 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3672         TCGA-AA-3678 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3688         TCGA-AA-3695 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3697         TCGA-AA-3710 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3712         TCGA-AA-3713         TCGA-AA-3715 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3812         TCGA-AA-3814 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3815         TCGA-AA-3818         TCGA-AA-3819 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3848 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3852         TCGA-AA-3854 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3861         TCGA-AA-3864 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3869         TCGA-AA-3872 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3947         TCGA-AA-3950 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3968         TCGA-AA-3971 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3986         TCGA-AA-3989 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00E 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00Q 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01I 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A022 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02K 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AD-5900 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AD-6548         TCGA-AD-6889         TCGA-AD-6899 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2689         TCGA-AF-3400 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AF-3913         TCGA-AF-5654         TCGA-AF-6136 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3609         TCGA-AG-3612 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3731         TCGA-AG-3742 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3893         TCGA-AG-3896 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A002 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01W 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A026 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AG-A036         TCGA-AH-6544         TCGA-AH-6547 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AH-6644 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4682 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-5407         TCGA-AZ-6598         TCGA-AZ-6599 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6606         TCGA-AZ-6607 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-AZ-6608         TCGA-CA-5254         TCGA-CA-5255 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CA-5796         TCGA-CA-5797         TCGA-CA-6715 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CA-6716         TCGA-CA-6717         TCGA-CA-6718 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6621         TCGA-CK-5914 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6746         TCGA-CK-6747 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CK-6748         TCGA-CK-6751         TCGA-CL-5918 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-4743         TCGA-CM-4744         TCGA-CM-4747 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-4752         TCGA-CM-5341         TCGA-CM-5348 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-5349         TCGA-CM-5860         TCGA-CM-5861 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-5862         TCGA-CM-5863         TCGA-CM-5864 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-5868         TCGA-CM-6161         TCGA-CM-6162 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6163         TCGA-CM-6164         TCGA-CM-6165 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6166         TCGA-CM-6167         TCGA-CM-6168 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6169         TCGA-CM-6170         TCGA-CM-6171 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6172         TCGA-CM-6674         TCGA-CM-6675 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5538 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6930         TCGA-D5-6931 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-D5-6932         TCGA-DC-5337         TCGA-DC-5869 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XF 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A28C 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DM-A28E         TCGA-DM-A28F         TCGA-DM-A28G 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" "TMEM229B WILD-TYPE" 
        TCGA-G5-6641 
"TMEM229B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM229B MUTATED        2      1      1      0
  TMEM229B WILD-TYPE    110     95     91    186
D1537V7, multiclass
        clus
vv       TMEM229B MUTATED TMEM229B WILD-TYPE
  CLUS_1                2                110
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM229B MUTATED        0      1      1      0      1      0      1
  TMEM229B WILD-TYPE     60     49     48     40     62    125     98
D1537V8, multiclass
        clus
vv       TMEM229B MUTATED TMEM229B WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM229B MUTATED        2      1      0      1
  TMEM229B WILD-TYPE    128     77     68    195
D1537V9, multiclass
        clus
vv       TMEM229B MUTATED TMEM229B WILD-TYPE
  CLUS_1                2                128
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM229B MUTATED        2      1      0      0      1      0      0      0
  TMEM229B WILD-TYPE     38     61     28     80     68     48     43     28
                    vv
clus                 CLUS_9
  TMEM229B MUTATED        0
  TMEM229B WILD-TYPE     74
D1537V10, multiclass
        clus
vv       TMEM229B MUTATED TMEM229B WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM229B MUTATED        0      0      0      0
  TMEM229B WILD-TYPE     33     31     27     19
D1537V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM229B MUTATED        0      0      0      0
  TMEM229B WILD-TYPE     54     10     24     22
D1537V12, multiclass

Clustering(1538) Variable = ABCG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG2 MUTATED        3      1      0      3
  ABCG2 WILD-TYPE     43     57     64     40
D1538V1, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG2 MUTATED        3      2      2
  ABCG2 WILD-TYPE     48     81     75
D1538V2, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG2 MUTATED        9      1      5      0
  ABCG2 WILD-TYPE    169    182     96     20
D1538V3, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG2 MUTATED        1      3      4
  ABCG2 WILD-TYPE     86     77     96
D1538V4, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG2 MUTATED        0      4      9
  ABCG2 WILD-TYPE     89    156    129
D1538V5, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCG2 MUTATED        8      5      0
  ABCG2 WILD-TYPE    174    128     72
D1538V6, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG2 MUTATED        4      1      4      6
  ABCG2 WILD-TYPE    108     95     88    180
D1538V7, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              95
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCG2 MUTATED        4      1      2      0      2      1      5
  ABCG2 WILD-TYPE     56     49     47     40     61    124     94
D1538V8, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG2 MUTATED        4      2      2      6
  ABCG2 WILD-TYPE    126     76     66    190
D1538V9, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABCG2 MUTATED        0      2      3      1      3      1      3      1
  ABCG2 WILD-TYPE     40     60     25     79     66     47     40     27
                 vv
clus              CLUS_9
  ABCG2 MUTATED        0
  ABCG2 WILD-TYPE     74
D1538V10, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG2 MUTATED        0      1      3      1
  ABCG2 WILD-TYPE     33     30     24     18
D1538V11, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             3              24
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCG2 MUTATED        1      1      3      0
  ABCG2 WILD-TYPE     53      9     21     22
D1538V12, multiclass
        clus
vv       ABCG2 MUTATED ABCG2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1539) Variable = TMEM168 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM168 MUTATED        2      0      0      4
  TMEM168 WILD-TYPE     44     58     64     39
D1539V1, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM168 MUTATED        2      1      3
  TMEM168 WILD-TYPE     49     82     74
D1539V2, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM168 MUTATED       14      2      0      0
  TMEM168 WILD-TYPE    164    181    101     20
D1539V3, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1              14               164
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM168 MUTATED        3      1      5
  TMEM168 WILD-TYPE     84     79     95
D1539V4, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM168 MUTATED        3      6      5
  TMEM168 WILD-TYPE     86    154    133
D1539V5, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               6               154
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM168 MUTATED        6      5      3
  TMEM168 WILD-TYPE    176    128     69
D1539V6, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM168 MUTATED        1      6      3      6
  TMEM168 WILD-TYPE    111     90     89    180
D1539V7, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               6                90
  CLUS_3               3                89
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM168 MUTATED        2      1      3      1      2      1      6
  TMEM168 WILD-TYPE     58     49     46     39     61    124     93
D1539V8, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM168 MUTATED        3      3      2      8
  TMEM168 WILD-TYPE    127     75     66    188
D1539V9, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               3                75
  CLUS_3               2                66
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM168 MUTATED        1      3      3      1      6      0      1      0
  TMEM168 WILD-TYPE     39     59     25     79     63     48     42     28
                   vv
clus                CLUS_9
  TMEM168 MUTATED        1
  TMEM168 WILD-TYPE     73
D1539V10, multiclass
        clus
vv       TMEM168 MUTATED TMEM168 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               3                25
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM168 MUTATED        0      1      0      0
  TMEM168 WILD-TYPE     33     30     27     19
D1539V11, multiclass
[1] "Remove cluster labels:" "TMEM168 MUTATED"       
clus
  TMEM168 MUTATED TMEM168 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4616 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-G5-6641 
"TMEM168 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM168 MUTATED        1      0      0      0
  TMEM168 WILD-TYPE     53     10     24     22
D1539V12, multiclass
[1] "Remove cluster labels:" "TMEM168 MUTATED"       
clus
  TMEM168 MUTATED TMEM168 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4616 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" "TMEM168 WILD-TYPE" 
       TCGA-G5-6641 
"TMEM168 WILD-TYPE" 

Clustering(1540) Variable = NUDT15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT15 MUTATED        1      0      0      1
  NUDT15 WILD-TYPE     45     58     64     42
D1540V1, multiclass
[1] "Remove cluster labels:" "NUDT15 MUTATED"        
clus
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AY-4071 
"NUDT15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT15 MUTATED        0      1      1
  NUDT15 WILD-TYPE     51     82     76
D1540V2, multiclass
[1] "Remove cluster labels:" "NUDT15 MUTATED"        
clus
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AY-4071 
"NUDT15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT15 MUTATED        4      0      0      0
  NUDT15 WILD-TYPE    174    183    101     20
D1540V3, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT15 MUTATED        1      0      1
  NUDT15 WILD-TYPE     86     80     99
D1540V4, multiclass
[1] "Remove cluster labels:" "NUDT15 MUTATED"        
clus
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AF-2693       TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6386 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6719 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6622 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948       TCGA-CK-4950 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913       TCGA-CK-5914 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917       TCGA-CL-5918 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-5538 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929       TCGA-D5-6930 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000       TCGA-DC-5337 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G5-6641 
"NUDT15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT15 MUTATED        0      2      1
  NUDT15 WILD-TYPE     89    158    137
D1540V5, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT15 MUTATED        2      1      0
  NUDT15 WILD-TYPE    180    132     72
D1540V6, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT15 MUTATED        0      1      1      2
  NUDT15 WILD-TYPE    112     95     91    184
D1540V7, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT15 MUTATED        1      0      2      0      0      1      0
  NUDT15 WILD-TYPE     59     50     47     40     63    124     99
D1540V8, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT15 MUTATED        1      1      0      2
  NUDT15 WILD-TYPE    129     77     68    194
D1540V9, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUDT15 MUTATED        1      1      0      1      1      0      0      0
  NUDT15 WILD-TYPE     39     61     28     79     68     48     43     28
                  vv
clus               CLUS_9
  NUDT15 MUTATED        0
  NUDT15 WILD-TYPE     74
D1540V10, multiclass
        clus
vv       NUDT15 MUTATED NUDT15 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT15 MUTATED        0      0      0      1
  NUDT15 WILD-TYPE     33     31     27     18
D1540V11, multiclass
[1] "Remove cluster labels:" "NUDT15 MUTATED"        
clus
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G5-6641 
"NUDT15 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT15 MUTATED        1      0      0      0
  NUDT15 WILD-TYPE     53     10     24     22
D1540V12, multiclass
[1] "Remove cluster labels:" "NUDT15 MUTATED"        
clus
  NUDT15 MUTATED NUDT15 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" "NUDT15 WILD-TYPE" 
      TCGA-G5-6641 
"NUDT15 WILD-TYPE" 

Clustering(1541) Variable = PANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        1      0      0      2
  PANK1 WILD-TYPE     45     58     64     41
D1541V1, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        2      1      0
  PANK1 WILD-TYPE     49     82     77
D1541V2, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        7      0      0      0
  PANK1 WILD-TYPE    171    183    101     20
D1541V3, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        1      0      4
  PANK1 WILD-TYPE     86     80     96
D1541V4, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        1      2      4
  PANK1 WILD-TYPE     88    158    134
D1541V5, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        3      2      2
  PANK1 WILD-TYPE    179    131     70
D1541V6, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        0      4      0      3
  PANK1 WILD-TYPE    112     92     92    183
D1541V7, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PANK1 MUTATED        0      1      2      1      0      0      3
  PANK1 WILD-TYPE     60     49     47     39     63    125     96
D1541V8, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        2      0      0      4
  PANK1 WILD-TYPE    128     78     68    192
D1541V9, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PANK1 MUTATED        1      0      1      1      2      0      0      0
  PANK1 WILD-TYPE     39     62     27     79     67     48     43     28
                 vv
clus              CLUS_9
  PANK1 MUTATED        1
  PANK1 WILD-TYPE     73
D1541V10, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        0      0      0      1
  PANK1 WILD-TYPE     33     31     27     18
D1541V11, multiclass
[1] "Remove cluster labels:" "PANK1 MUTATED"         
clus
  PANK1 MUTATED PANK1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-G5-6641 
"PANK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        0      0      1      0
  PANK1 WILD-TYPE     54     10     23     22
D1541V12, multiclass
[1] "Remove cluster labels:" "PANK1 MUTATED"         
clus
  PANK1 MUTATED PANK1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6654 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" "PANK1 WILD-TYPE" 
     TCGA-G5-6641 
"PANK1 WILD-TYPE" 

Clustering(1542) Variable = SYT14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        2      0      2      3
  SYT14 WILD-TYPE     44     58     62     40
D1542V1, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        3      2      2
  SYT14 WILD-TYPE     48     81     75
D1542V2, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED       11      3      1      0
  SYT14 WILD-TYPE    167    180    100     20
D1542V3, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        4      2      3
  SYT14 WILD-TYPE     83     78     97
D1542V4, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        3      5      4
  SYT14 WILD-TYPE     86    155    134
D1542V5, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT14 MUTATED        6      5      1
  SYT14 WILD-TYPE    176    128     71
D1542V6, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        2      2      4      7
  SYT14 WILD-TYPE    110     94     88    179
D1542V7, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYT14 MUTATED        1      2      3      2      1      3      3
  SYT14 WILD-TYPE     59     48     46     38     62    122     96
D1542V8, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        4      2      2      7
  SYT14 WILD-TYPE    126     76     66    189
D1542V9, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SYT14 MUTATED        0      3      2      2      2      1      3      0
  SYT14 WILD-TYPE     40     59     26     78     67     47     40     28
                 vv
clus              CLUS_9
  SYT14 MUTATED        2
  SYT14 WILD-TYPE     72
D1542V10, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        2      1      0      1
  SYT14 WILD-TYPE     31     30     27     18
D1542V11, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT14 MUTATED        3      0      0      1
  SYT14 WILD-TYPE     51     10     24     21
D1542V12, multiclass
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1543) Variable = ARHGAP25 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP25 MUTATED        1      0      1      1
  ARHGAP25 WILD-TYPE     45     58     63     42
D1543V1, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP25 MUTATED        1      0      2
  ARHGAP25 WILD-TYPE     50     83     75
D1543V2, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                0                 83
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP25 MUTATED        7      3      2      0
  ARHGAP25 WILD-TYPE    171    180     99     20
D1543V3, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                7                171
  CLUS_2                3                180
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP25 MUTATED        5      3      0
  ARHGAP25 WILD-TYPE     82     77    100
D1543V4, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                3                 77
  CLUS_3                0                100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP25 MUTATED        0      3      8
  ARHGAP25 WILD-TYPE     89    157    130
D1543V5, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                3                157
  CLUS_3                8                130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP25 MUTATED        5      5      1
  ARHGAP25 WILD-TYPE    177    128     71
D1543V6, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                5                128
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP25 MUTATED        3      1      4      4
  ARHGAP25 WILD-TYPE    109     95     88    182
D1543V7, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                1                 95
  CLUS_3                4                 88
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP25 MUTATED        4      2      1      0      2      1      2
  ARHGAP25 WILD-TYPE     56     48     48     40     61    124     97
D1543V8, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                4                 56
  CLUS_2                2                 48
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP25 MUTATED        4      2      1      5
  ARHGAP25 WILD-TYPE    126     76     67    191
D1543V9, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP25 MUTATED        0      4      1      1      3      2      0      0
  ARHGAP25 WILD-TYPE     40     58     27     79     66     46     43     28
                    vv
clus                 CLUS_9
  ARHGAP25 MUTATED        1
  ARHGAP25 WILD-TYPE     73
D1543V10, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 58
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                3                 66
  CLUS_6                2                 46
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP25 MUTATED        1      1      0      2
  ARHGAP25 WILD-TYPE     32     30     27     17
D1543V11, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP25 MUTATED        1      1      0      2
  ARHGAP25 WILD-TYPE     53      9     24     20
D1543V12, multiclass
        clus
vv       ARHGAP25 MUTATED ARHGAP25 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                  9
  CLUS_3                0                 24
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1544) Variable = HCFC1R1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        1      0      0      0
  HCFC1R1 WILD-TYPE     45     58     64     43
D1544V1, multiclass
[1] "Remove cluster labels:" "HCFC1R1 MUTATED"       
clus
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3846 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HCFC1R1 MUTATED        1      0      0
  HCFC1R1 WILD-TYPE     50     83     77
D1544V2, multiclass
[1] "Remove cluster labels:" "HCFC1R1 MUTATED"       
clus
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3846 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        4      1      0      0
  HCFC1R1 WILD-TYPE    174    182    101     20
D1544V3, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HCFC1R1 MUTATED        1      1      2
  HCFC1R1 WILD-TYPE     86     79     98
D1544V4, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HCFC1R1 MUTATED        0      2      3
  HCFC1R1 WILD-TYPE     89    158    135
D1544V5, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HCFC1R1 MUTATED        3      2      0
  HCFC1R1 WILD-TYPE    179    131     72
D1544V6, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        1      2      1      1
  HCFC1R1 WILD-TYPE    111     94     91    185
D1544V7, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HCFC1R1 MUTATED        0      1      3      0      0      0      1
  HCFC1R1 WILD-TYPE     60     49     46     40     63    125     98
D1544V8, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        2      1      1      1
  HCFC1R1 WILD-TYPE    128     77     67    195
D1544V9, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HCFC1R1 MUTATED        1      1      0      0      1      0      2      0
  HCFC1R1 WILD-TYPE     39     61     28     80     68     48     41     28
                   vv
clus                CLUS_9
  HCFC1R1 MUTATED        0
  HCFC1R1 WILD-TYPE     74
D1544V10, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        2      0      0      0
  HCFC1R1 WILD-TYPE     31     31     27     19
D1544V11, multiclass
[1] "Remove cluster labels:" "HCFC1R1 MUTATED"       
clus
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        1      0      0      1
  HCFC1R1 WILD-TYPE     53     10     24     21
D1544V12, multiclass
[1] "Remove cluster labels:" "HCFC1R1 MUTATED"       
clus
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 

Clustering(1545) Variable = C7ORF66 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF66 MUTATED        1      0      0      0
  C7ORF66 WILD-TYPE     45     58     64     43
D1545V1, multiclass
[1] "Remove cluster labels:" "C7ORF66 MUTATED"       
clus
  C7ORF66 MUTATED C7ORF66 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF66 MUTATED        0      1      0
  C7ORF66 WILD-TYPE     51     82     77
D1545V2, multiclass
[1] "Remove cluster labels:" "C7ORF66 MUTATED"       
clus
  C7ORF66 MUTATED C7ORF66 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C7ORF66 WILD-TYPE" "C7ORF66 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF66 MUTATED        5      2      1      0
  C7ORF66 WILD-TYPE    173    181    100     20
D1545V3, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF66 MUTATED        2      1      4
  C7ORF66 WILD-TYPE     85     79     96
D1545V4, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF66 MUTATED        0      1      5
  C7ORF66 WILD-TYPE     89    159    133
D1545V5, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF66 MUTATED        5      1      0
  C7ORF66 WILD-TYPE    177    132     72
D1545V6, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF66 MUTATED        1      1      5      1
  C7ORF66 WILD-TYPE    111     95     87    185
D1545V7, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               5                87
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C7ORF66 MUTATED        2      0      3      0      2      1      0
  C7ORF66 WILD-TYPE     58     50     46     40     61    124     99
D1545V8, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF66 MUTATED        2      5      0      1
  C7ORF66 WILD-TYPE    128     73     68    195
D1545V9, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C7ORF66 MUTATED        0      4      0      1      1      1      1      0
  C7ORF66 WILD-TYPE     40     58     28     79     68     47     42     28
                   vv
clus                CLUS_9
  C7ORF66 MUTATED        0
  C7ORF66 WILD-TYPE     74
D1545V10, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                58
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF66 MUTATED        2      1      0      0
  C7ORF66 WILD-TYPE     31     30     27     19
D1545V11, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF66 MUTATED        3      0      0      0
  C7ORF66 WILD-TYPE     51     10     24     22
D1545V12, multiclass
        clus
vv       C7ORF66 MUTATED C7ORF66 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1546) Variable = CD47 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD47 MUTATED        1      0      0      1
  CD47 WILD-TYPE     45     58     64     42
D1546V1, multiclass
[1] "Remove cluster labels:" "CD47 MUTATED"          
clus
  CD47 MUTATED CD47 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AY-4071 
"CD47 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD47 MUTATED        1      1      0
  CD47 WILD-TYPE     50     82     77
D1546V2, multiclass
[1] "Remove cluster labels:" "CD47 MUTATED"          
clus
  CD47 MUTATED CD47 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" "CD47 WILD-TYPE" 
    TCGA-AY-4071 
"CD47 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD47 MUTATED        4      2      2      0
  CD47 WILD-TYPE    174    181     99     20
D1546V3, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD47 MUTATED        1      2      2
  CD47 WILD-TYPE     86     78     98
D1546V4, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD47 MUTATED        1      2      4
  CD47 WILD-TYPE     88    158    134
D1546V5, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD47 MUTATED        3      3      1
  CD47 WILD-TYPE    179    130     71
D1546V6, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD47 MUTATED        2      1      2      3
  CD47 WILD-TYPE    110     95     90    183
D1546V7, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD47 MUTATED        0      2      1      0      2      0      3
  CD47 WILD-TYPE     60     48     48     40     61    125     96
D1546V8, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD47 MUTATED        3      2      0      3
  CD47 WILD-TYPE    127     76     68    193
D1546V9, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CD47 MUTATED        1      2      2      0      3      0      0      0      0
  CD47 WILD-TYPE     39     60     26     80     66     48     43     28     74
D1546V10, multiclass
        clus
vv       CD47 MUTATED CD47 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD47 MUTATED        0      0      0      0
  CD47 WILD-TYPE     33     31     27     19
D1546V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD47 MUTATED        0      0      0      0
  CD47 WILD-TYPE     54     10     24     22
D1546V12, multiclass

Clustering(1547) Variable = RWDD4A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RWDD4A MUTATED        1      0      0      0
  RWDD4A WILD-TYPE     45     58     64     43
D1547V1, multiclass
[1] "Remove cluster labels:" "RWDD4A MUTATED"        
clus
  RWDD4A MUTATED RWDD4A WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3521 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RWDD4A MUTATED        0      0      1
  RWDD4A WILD-TYPE     51     83     76
D1547V2, multiclass
[1] "Remove cluster labels:" "RWDD4A MUTATED"        
clus
  RWDD4A MUTATED RWDD4A WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3521 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"RWDD4A WILD-TYPE" "RWDD4A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RWDD4A MUTATED        4      1      0      0
  RWDD4A WILD-TYPE    174    182    101     20
D1547V3, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RWDD4A MUTATED        3      1      0
  RWDD4A WILD-TYPE     84     79    100
D1547V4, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RWDD4A MUTATED        1      2      1
  RWDD4A WILD-TYPE     88    158    137
D1547V5, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RWDD4A MUTATED        2      2      0
  RWDD4A WILD-TYPE    180    131     72
D1547V6, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RWDD4A MUTATED        3      0      0      2
  RWDD4A WILD-TYPE    109     96     92    184
D1547V7, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               96
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RWDD4A MUTATED        2      1      0      0      0      0      2
  RWDD4A WILD-TYPE     58     49     49     40     63    125     97
D1547V8, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RWDD4A MUTATED        1      0      2      2
  RWDD4A WILD-TYPE    129     78     66    194
D1547V9, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RWDD4A MUTATED        0      0      0      0      0      2      2      0
  RWDD4A WILD-TYPE     40     62     28     80     69     46     41     28
                  vv
clus               CLUS_9
  RWDD4A MUTATED        1
  RWDD4A WILD-TYPE     73
D1547V10, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RWDD4A MUTATED        3      0      0      0
  RWDD4A WILD-TYPE     30     31     27     19
D1547V11, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RWDD4A MUTATED        2      0      0      1
  RWDD4A WILD-TYPE     52     10     24     21
D1547V12, multiclass
        clus
vv       RWDD4A MUTATED RWDD4A WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1548) Variable = EPRS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPRS MUTATED        4      0      1      4
  EPRS WILD-TYPE     42     58     63     39
D1548V1, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPRS MUTATED        5      3      1
  EPRS WILD-TYPE     46     80     76
D1548V2, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            5             46
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPRS MUTATED       14      5      3      1
  EPRS WILD-TYPE    164    178     98     19
D1548V3, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1           14            164
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPRS MUTATED        6      2      6
  EPRS WILD-TYPE     81     78     94
D1548V4, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPRS MUTATED        2      7      7
  EPRS WILD-TYPE     87    153    131
D1548V5, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPRS MUTATED        6      8      2
  EPRS WILD-TYPE    176    125     70
D1548V6, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            6            176
  CLUS_2            8            125
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPRS MUTATED        6      4      4      9
  EPRS WILD-TYPE    106     92     88    177
D1548V7, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            6            106
  CLUS_2            4             92
  CLUS_3            4             88
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPRS MUTATED        5      2      4      2      2      2      6
  EPRS WILD-TYPE     55     48     45     38     61    123     93
D1548V8, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            5             55
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPRS MUTATED        6      5      1     10
  EPRS WILD-TYPE    124     73     67    186
D1548V9, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            6            124
  CLUS_2            5             73
  CLUS_3            1             67
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EPRS MUTATED        4      3      2      2      6      2      1      1      1
  EPRS WILD-TYPE     36     59     26     78     63     46     42     27     73
D1548V10, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            4             36
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            2             46
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPRS MUTATED        2      0      0      1
  EPRS WILD-TYPE     31     31     27     18
D1548V11, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPRS MUTATED        2      0      0      1
  EPRS WILD-TYPE     52     10     24     21
D1548V12, multiclass
        clus
vv       EPRS MUTATED EPRS WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1549) Variable = DUSP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        0      0      0      1
  DUSP9 WILD-TYPE     46     58     64     42
D1549V1, multiclass
[1] "Remove cluster labels:" "DUSP9 MUTATED"         
clus
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        1      0      0
  DUSP9 WILD-TYPE     50     83     77
D1549V2, multiclass
[1] "Remove cluster labels:" "DUSP9 MUTATED"         
clus
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        6      3      0      0
  DUSP9 WILD-TYPE    172    180    101     20
D1549V3, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        3      3      2
  DUSP9 WILD-TYPE     84     77     98
D1549V4, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        2      1      5
  DUSP9 WILD-TYPE     87    159    133
D1549V5, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        7      0      1
  DUSP9 WILD-TYPE    175    133     71
D1549V6, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        2      3      3      1
  DUSP9 WILD-TYPE    110     93     89    185
D1549V7, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DUSP9 MUTATED        1      1      3      0      3      0      1
  DUSP9 WILD-TYPE     59     49     46     40     60    125     98
D1549V8, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        2      5      0      2
  DUSP9 WILD-TYPE    128     73     68    194
D1549V9, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DUSP9 MUTATED        2      3      0      0      3      0      1      0
  DUSP9 WILD-TYPE     38     59     28     80     66     48     42     28
                 vv
clus              CLUS_9
  DUSP9 MUTATED        0
  DUSP9 WILD-TYPE     74
D1549V10, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        1      2      0      0
  DUSP9 WILD-TYPE     32     29     27     19
D1549V11, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        2      1      0      0
  DUSP9 WILD-TYPE     52      9     24     22
D1549V12, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1550) Variable = HIST1H1A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        1      0      0      1
  HIST1H1A WILD-TYPE     45     58     64     42
D1550V1, multiclass
[1] "Remove cluster labels:" "HIST1H1A MUTATED"      
clus
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A029 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        1      0      1
  HIST1H1A WILD-TYPE     50     83     76
D1550V2, multiclass
[1] "Remove cluster labels:" "HIST1H1A MUTATED"      
clus
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A029 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        7      1      0      1
  HIST1H1A WILD-TYPE    171    182    101     19
D1550V3, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                7                171
  CLUS_2                1                182
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        2      1      3
  HIST1H1A WILD-TYPE     85     79     97
D1550V4, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        2      3      4
  HIST1H1A WILD-TYPE     87    157    134
D1550V5, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                3                157
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        2      4      3
  HIST1H1A WILD-TYPE    180    129     69
D1550V6, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                180
  CLUS_2                4                129
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        1      5      1      2
  HIST1H1A WILD-TYPE    111     91     91    184
D1550V7, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                111
  CLUS_2                5                 91
  CLUS_3                1                 91
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1A MUTATED        2      2      2      0      0      0      3
  HIST1H1A WILD-TYPE     58     48     47     40     63    125     96
D1550V8, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                2                 48
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        1      1      1      6
  HIST1H1A WILD-TYPE    129     77     67    190
D1550V9, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H1A MUTATED        2      0      0      0      4      0      1      0
  HIST1H1A WILD-TYPE     38     62     28     80     65     48     42     28
                    vv
clus                 CLUS_9
  HIST1H1A MUTATED        2
  HIST1H1A WILD-TYPE     72
D1550V10, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 62
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        1      0      0      0
  HIST1H1A WILD-TYPE     32     31     27     19
D1550V11, multiclass
[1] "Remove cluster labels:" "HIST1H1A MUTATED"      
clus
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-6142         TCGA-A6-6649         TCGA-A6-6651 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H1A WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        1      0      0      0
  HIST1H1A WILD-TYPE     53     10     24     22
D1550V12, multiclass
[1] "Remove cluster labels:" "HIST1H1A MUTATED"      
clus
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-6142         TCGA-A6-6649         TCGA-A6-6651 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H1A WILD-TYPE" 

Clustering(1551) Variable = ZSCAN20 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSCAN20 MUTATED        1      0      3      3
  ZSCAN20 WILD-TYPE     45     58     61     40
D1551V1, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               3                61
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZSCAN20 MUTATED        2      2      3
  ZSCAN20 WILD-TYPE     49     81     74
D1551V2, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSCAN20 MUTATED        8      4      5      0
  ZSCAN20 WILD-TYPE    170    179     96     20
D1551V3, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               4               179
  CLUS_3               5                96
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZSCAN20 MUTATED        7      0      3
  ZSCAN20 WILD-TYPE     80     80     97
D1551V4, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZSCAN20 MUTATED        4      4      8
  ZSCAN20 WILD-TYPE     85    156    130
D1551V5, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               4               156
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZSCAN20 MUTATED        6      7      3
  ZSCAN20 WILD-TYPE    176    126     69
D1551V6, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               7               126
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSCAN20 MUTATED        0      7      4      6
  ZSCAN20 WILD-TYPE    112     89     88    180
D1551V7, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               7                89
  CLUS_3               4                88
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZSCAN20 MUTATED        1      4      4      2      1      3      2
  ZSCAN20 WILD-TYPE     59     46     45     38     62    122     97
D1551V8, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               4                46
  CLUS_3               4                45
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               3               122
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSCAN20 MUTATED        4      3      3      7
  ZSCAN20 WILD-TYPE    126     75     65    189
D1551V9, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               3                65
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZSCAN20 MUTATED        0      2      0      4      5      0      2      0
  ZSCAN20 WILD-TYPE     40     60     28     76     64     48     41     28
                   vv
clus                CLUS_9
  ZSCAN20 MUTATED        4
  ZSCAN20 WILD-TYPE     70
D1551V10, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               4                76
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSCAN20 MUTATED        0      2      0      1
  ZSCAN20 WILD-TYPE     33     29     27     18
D1551V11, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZSCAN20 MUTATED        2      0      0      1
  ZSCAN20 WILD-TYPE     52     10     24     21
D1551V12, multiclass
        clus
vv       ZSCAN20 MUTATED ZSCAN20 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1552) Variable = ERCC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        4      1      0      2
  ERCC3 WILD-TYPE     42     57     64     41
D1552V1, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC3 MUTATED        3      3      1
  ERCC3 WILD-TYPE     48     80     76
D1552V2, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED       13      3      3      0
  ERCC3 WILD-TYPE    165    180     98     20
D1552V3, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC3 MUTATED        6      1      6
  ERCC3 WILD-TYPE     81     79     94
D1552V4, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC3 MUTATED        3      6      8
  ERCC3 WILD-TYPE     86    154    130
D1552V5, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC3 MUTATED        8      7      2
  ERCC3 WILD-TYPE    174    126     70
D1552V6, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        2      4      7      7
  ERCC3 WILD-TYPE    110     92     85    179
D1552V7, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             7              85
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERCC3 MUTATED        2      1      5      3      3      1      5
  ERCC3 WILD-TYPE     58     49     44     37     60    124     94
D1552V8, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        4      4      2      9
  ERCC3 WILD-TYPE    126     74     66    187
D1552V9, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERCC3 MUTATED        3      4      1      2      7      0      2      0
  ERCC3 WILD-TYPE     37     58     27     78     62     48     41     28
                 vv
clus              CLUS_9
  ERCC3 MUTATED        0
  ERCC3 WILD-TYPE     74
D1552V10, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        1      1      1      1
  ERCC3 WILD-TYPE     32     30     26     18
D1552V11, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC3 MUTATED        3      0      0      1
  ERCC3 WILD-TYPE     51     10     24     21
D1552V12, multiclass
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1553) Variable = XKR3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XKR3 MUTATED        2      0      0      2
  XKR3 WILD-TYPE     44     58     64     41
D1553V1, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XKR3 MUTATED        2      1      1
  XKR3 WILD-TYPE     49     82     76
D1553V2, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XKR3 MUTATED       10      1      3      1
  XKR3 WILD-TYPE    168    182     98     19
D1553V3, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XKR3 MUTATED        4      3      4
  XKR3 WILD-TYPE     83     77     96
D1553V4, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XKR3 MUTATED        0      3      8
  XKR3 WILD-TYPE     89    157    130
D1553V5, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            8            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XKR3 MUTATED        5      5      1
  XKR3 WILD-TYPE    177    128     71
D1553V6, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XKR3 MUTATED        3      3      4      5
  XKR3 WILD-TYPE    109     93     88    181
D1553V7, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            4             88
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XKR3 MUTATED        2      3      3      0      3      2      2
  XKR3 WILD-TYPE     58     47     46     40     60    123     97
D1553V8, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XKR3 MUTATED        5      3      0      7
  XKR3 WILD-TYPE    125     75     68    189
D1553V9, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  XKR3 MUTATED        0      3      1      5      3      0      1      0      2
  XKR3 WILD-TYPE     40     59     27     75     66     48     42     28     72
D1553V10, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            5             75
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XKR3 MUTATED        0      1      0      2
  XKR3 WILD-TYPE     33     30     27     17
D1553V11, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XKR3 MUTATED        2      0      0      1
  XKR3 WILD-TYPE     52     10     24     21
D1553V12, multiclass
        clus
vv       XKR3 MUTATED XKR3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1554) Variable = PIGS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGS MUTATED        1      0      0      1
  PIGS WILD-TYPE     45     58     64     42
D1554V1, multiclass
[1] "Remove cluster labels:" "PIGS MUTATED"          
clus
  PIGS MUTATED PIGS WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3560     TCGA-AA-3561 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AY-4071 
"PIGS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGS MUTATED        1      0      1
  PIGS WILD-TYPE     50     83     76
D1554V2, multiclass
[1] "Remove cluster labels:" "PIGS MUTATED"          
clus
  PIGS MUTATED PIGS WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3560     TCGA-AA-3561 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" "PIGS WILD-TYPE" 
    TCGA-AY-4071 
"PIGS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGS MUTATED        6      0      2      0
  PIGS WILD-TYPE    172    183     99     20
D1554V3, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGS MUTATED        1      1      4
  PIGS WILD-TYPE     86     79     96
D1554V4, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGS MUTATED        2      2      3
  PIGS WILD-TYPE     87    158    135
D1554V5, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGS MUTATED        4      2      1
  PIGS WILD-TYPE    178    131     71
D1554V6, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGS MUTATED        2      1      3      1
  PIGS WILD-TYPE    110     95     89    185
D1554V7, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIGS MUTATED        1      2      2      1      0      0      1
  PIGS WILD-TYPE     59     48     47     39     63    125     98
D1554V8, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGS MUTATED        4      1      1      2
  PIGS WILD-TYPE    126     77     67    194
D1554V9, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PIGS MUTATED        1      1      1      2      2      0      0      0      1
  PIGS WILD-TYPE     39     61     27     78     67     48     43     28     73
D1554V10, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGS MUTATED        0      0      1      2
  PIGS WILD-TYPE     33     31     26     17
D1554V11, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGS MUTATED        1      0      2      0
  PIGS WILD-TYPE     53     10     22     22
D1554V12, multiclass
        clus
vv       PIGS MUTATED PIGS WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1555) Variable = AAMP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        0      0      0      0
  AAMP WILD-TYPE     46     58     64     43
D1555V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        0      0      0
  AAMP WILD-TYPE     51     83     77
D1555V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        3      0      0      0
  AAMP WILD-TYPE    175    183    101     20
D1555V3, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        2      0      1
  AAMP WILD-TYPE     85     80     99
D1555V4, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        0      1      2
  AAMP WILD-TYPE     89    159    136
D1555V5, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        2      0      1
  AAMP WILD-TYPE    180    133     71
D1555V6, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2            180
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        0      1      2      0
  AAMP WILD-TYPE    112     95     90    186
D1555V7, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AAMP MUTATED        0      0      3      0      0      0      0
  AAMP WILD-TYPE     60     50     46     40     63    125     99
D1555V8, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        2      1      0      0
  AAMP WILD-TYPE    128     77     68    196
D1555V9, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AAMP MUTATED        0      1      0      0      1      0      1      0      0
  AAMP WILD-TYPE     40     61     28     80     68     48     42     28     74
D1555V10, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        1      0      0      2
  AAMP WILD-TYPE     32     31     27     17
D1555V11, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        2      0      1      0
  AAMP WILD-TYPE     52     10     23     22
D1555V12, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1556) Variable = IL21R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL21R MUTATED        1      1      0      2
  IL21R WILD-TYPE     45     57     64     41
D1556V1, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL21R MUTATED        2      0      2
  IL21R WILD-TYPE     49     83     75
D1556V2, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL21R MUTATED       11      1      2      0
  IL21R WILD-TYPE    167    182     99     20
D1556V3, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL21R MUTATED        2      1      7
  IL21R WILD-TYPE     85     79     93
D1556V4, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL21R MUTATED        3      5      3
  IL21R WILD-TYPE     86    155    135
D1556V5, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL21R MUTATED        5      4      2
  IL21R WILD-TYPE    177    129     70
D1556V6, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL21R MUTATED        2      7      2      3
  IL21R WILD-TYPE    110     89     90    183
D1556V7, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL21R MUTATED        2      1      6      1      0      1      3
  IL21R WILD-TYPE     58     49     43     39     63    124     96
D1556V8, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL21R MUTATED        6      1      0      7
  IL21R WILD-TYPE    124     77     68    189
D1556V9, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IL21R MUTATED        1      1      0      3      9      0      0      0
  IL21R WILD-TYPE     39     61     28     77     60     48     43     28
                 vv
clus              CLUS_9
  IL21R MUTATED        0
  IL21R WILD-TYPE     74
D1556V10, multiclass
        clus
vv       IL21R MUTATED IL21R WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             9              60
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL21R MUTATED        0      0      0      2
  IL21R WILD-TYPE     33     31     27     17
D1556V11, multiclass
[1] "Remove cluster labels:" "IL21R MUTATED"         
clus
  IL21R MUTATED IL21R WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL21R MUTATED        0      0      2      0
  IL21R WILD-TYPE     54     10     22     22
D1556V12, multiclass
[1] "Remove cluster labels:" "IL21R MUTATED"         
clus
  IL21R MUTATED IL21R WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" "IL21R WILD-TYPE" 

Clustering(1557) Variable = MBP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBP MUTATED        2      0      0      1
  MBP WILD-TYPE     44     58     64     42
D1557V1, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MBP MUTATED        2      1      0
  MBP WILD-TYPE     49     82     77
D1557V2, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBP MUTATED        6      0      0      0
  MBP WILD-TYPE    172    183    101     20
D1557V3, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           6           172
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MBP MUTATED        2      0      1
  MBP WILD-TYPE     85     80     99
D1557V4, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           2            85
  CLUS_2           0            80
  CLUS_3           1            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MBP MUTATED        0      3      3
  MBP WILD-TYPE     89    157    135
D1557V5, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           0            89
  CLUS_2           3           157
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MBP MUTATED        3      2      1
  MBP WILD-TYPE    179    131     71
D1557V6, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           3           179
  CLUS_2           2           131
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBP MUTATED        0      2      1      3
  MBP WILD-TYPE    112     94     91    183
D1557V7, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           0           112
  CLUS_2           2            94
  CLUS_3           1            91
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MBP MUTATED        0      0      3      0      0      0      3
  MBP WILD-TYPE     60     50     46     40     63    125     96
D1557V8, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           0            60
  CLUS_2           0            50
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBP MUTATED        2      1      0      3
  MBP WILD-TYPE    128     77     68    193
D1557V9, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           2           128
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MBP MUTATED        0      1      1      0      3      0      0      1      0
  MBP WILD-TYPE     40     61     27     80     66     48     43     27     74
D1557V10, multiclass
        clus
vv       MBP MUTATED MBP WILD-TYPE
  CLUS_1           0            40
  CLUS_2           1            61
  CLUS_3           1            27
  CLUS_4           0            80
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           1            27
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBP MUTATED        1      0      0      1
  MBP WILD-TYPE     32     31     27     18
D1557V11, multiclass
[1] "Remove cluster labels:" "MBP MUTATED"           
clus
  MBP MUTATED MBP WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6600 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBP MUTATED        1      0      1      0
  MBP WILD-TYPE     53     10     23     22
D1557V12, multiclass
[1] "Remove cluster labels:" "MBP MUTATED"           
clus
  MBP MUTATED MBP WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6600 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"MBP WILD-TYPE" "MBP WILD-TYPE" "MBP WILD-TYPE" 

Clustering(1558) Variable = DLGAP5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP5 MUTATED        1      0      0      2
  DLGAP5 WILD-TYPE     45     58     64     41
D1558V1, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP5 MUTATED        1      0      2
  DLGAP5 WILD-TYPE     50     83     75
D1558V2, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP5 MUTATED        5      5      0      0
  DLGAP5 WILD-TYPE    173    178    101     20
D1558V3, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              5              178
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP5 MUTATED        3      4      0
  DLGAP5 WILD-TYPE     84     76    100
D1558V4, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              4               76
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP5 MUTATED        2      5      3
  DLGAP5 WILD-TYPE     87    155    135
D1558V5, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP5 MUTATED        2      6      2
  DLGAP5 WILD-TYPE    180    127     70
D1558V6, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP5 MUTATED        4      1      1      4
  DLGAP5 WILD-TYPE    108     95     91    182
D1558V7, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLGAP5 MUTATED        2      2      0      1      2      2      1
  DLGAP5 WILD-TYPE     58     48     49     39     61    123     98
D1558V8, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP5 MUTATED        3      2      0      5
  DLGAP5 WILD-TYPE    127     76     68    191
D1558V9, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DLGAP5 MUTATED        1      2      0      1      2      2      0      0
  DLGAP5 WILD-TYPE     39     60     28     79     67     46     43     28
                  vv
clus               CLUS_9
  DLGAP5 MUTATED        2
  DLGAP5 WILD-TYPE     72
D1558V10, multiclass
        clus
vv       DLGAP5 MUTATED DLGAP5 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP5 MUTATED        1      0      0      0
  DLGAP5 WILD-TYPE     32     31     27     19
D1558V11, multiclass
[1] "Remove cluster labels:" "DLGAP5 MUTATED"        
clus
  DLGAP5 MUTATED DLGAP5 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-G5-6641 
"DLGAP5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP5 MUTATED        1      0      0      0
  DLGAP5 WILD-TYPE     53     10     24     22
D1558V12, multiclass
[1] "Remove cluster labels:" "DLGAP5 MUTATED"        
clus
  DLGAP5 MUTATED DLGAP5 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" "DLGAP5 WILD-TYPE" 
      TCGA-G5-6641 
"DLGAP5 WILD-TYPE" 

Clustering(1559) Variable = MAP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        4      0      1      5
  MAP7 WILD-TYPE     42     58     63     38
D1559V1, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP7 MUTATED        5      2      3
  MAP7 WILD-TYPE     46     81     74
D1559V2, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            2             81
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED       12      1      1      0
  MAP7 WILD-TYPE    166    182    100     20
D1559V3, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP7 MUTATED        1      0      3
  MAP7 WILD-TYPE     86     80     97
D1559V4, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP7 MUTATED        0      5      4
  MAP7 WILD-TYPE     89    155    134
D1559V5, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP7 MUTATED        5      3      1
  MAP7 WILD-TYPE    177    130     71
D1559V6, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        0      2      2     10
  MAP7 WILD-TYPE    112     94     90    176
D1559V7, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAP7 MUTATED        1      0      4      0      0      2      7
  MAP7 WILD-TYPE     59     50     45     40     63    123     92
D1559V8, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        2      1      0     10
  MAP7 WILD-TYPE    128     77     68    186
D1559V9, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MAP7 MUTATED        0      1      2      1      7      1      0      1      0
  MAP7 WILD-TYPE     40     61     26     79     62     47     43     27     74
D1559V10, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            7             62
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        0      0      0      3
  MAP7 WILD-TYPE     33     31     27     16
D1559V11, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        1      0      2      0
  MAP7 WILD-TYPE     53     10     22     22
D1559V12, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1560) Variable = OR4A16 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4A16 MUTATED        2      1      0      1
  OR4A16 WILD-TYPE     44     57     64     42
D1560V1, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4A16 MUTATED        1      2      1
  OR4A16 WILD-TYPE     50     81     76
D1560V2, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4A16 MUTATED        9      4      2      0
  OR4A16 WILD-TYPE    169    179     99     20
D1560V3, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4A16 MUTATED        6      2      3
  OR4A16 WILD-TYPE     81     78     97
D1560V4, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4A16 MUTATED        1      6      6
  OR4A16 WILD-TYPE     88    154    132
D1560V5, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR4A16 MUTATED        7      4      2
  OR4A16 WILD-TYPE    175    129     70
D1560V6, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4A16 MUTATED        4      2      5      4
  OR4A16 WILD-TYPE    108     94     87    182
D1560V7, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              2               94
  CLUS_3              5               87
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4A16 MUTATED        3      2      2      0      3      2      3
  OR4A16 WILD-TYPE     57     48     47     40     60    123     96
D1560V8, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4A16 MUTATED        5      3      2      5
  OR4A16 WILD-TYPE    125     75     66    191
D1560V9, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4A16 MUTATED        2      3      2      1      2      2      2      0
  OR4A16 WILD-TYPE     38     59     26     79     67     46     41     28
                  vv
clus               CLUS_9
  OR4A16 MUTATED        1
  OR4A16 WILD-TYPE     73
D1560V10, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4A16 MUTATED        2      1      0      0
  OR4A16 WILD-TYPE     31     30     27     19
D1560V11, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4A16 MUTATED        3      0      0      0
  OR4A16 WILD-TYPE     51     10     24     22
D1560V12, multiclass
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1561) Variable = IRF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF6 MUTATED        1      0      0      1
  IRF6 WILD-TYPE     45     58     64     42
D1561V1, multiclass
[1] "Remove cluster labels:" "IRF6 MUTATED"          
clus
  IRF6 MUTATED IRF6 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AY-4071 
"IRF6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF6 MUTATED        2      0      0
  IRF6 WILD-TYPE     49     83     77
D1561V2, multiclass
[1] "Remove cluster labels:" "IRF6 MUTATED"          
clus
  IRF6 MUTATED IRF6 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AY-4071 
"IRF6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF6 MUTATED        4      2      0      0
  IRF6 WILD-TYPE    174    181    101     20
D1561V3, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF6 MUTATED        2      0      2
  IRF6 WILD-TYPE     85     80     98
D1561V4, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF6 MUTATED        2      2      2
  IRF6 WILD-TYPE     87    158    136
D1561V5, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF6 MUTATED        2      2      2
  IRF6 WILD-TYPE    180    131     70
D1561V6, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF6 MUTATED        0      2      1      3
  IRF6 WILD-TYPE    112     94     91    183
D1561V7, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRF6 MUTATED        1      1      1      0      0      0      3
  IRF6 WILD-TYPE     59     49     48     40     63    125     96
D1561V8, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF6 MUTATED        2      1      0      2
  IRF6 WILD-TYPE    128     77     68    194
D1561V9, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IRF6 MUTATED        1      0      0      1      2      0      0      0      1
  IRF6 WILD-TYPE     39     62     28     79     67     48     43     28     73
D1561V10, multiclass
        clus
vv       IRF6 MUTATED IRF6 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF6 MUTATED        1      0      0      1
  IRF6 WILD-TYPE     32     31     27     18
D1561V11, multiclass
[1] "Remove cluster labels:" "IRF6 MUTATED"          
clus
  IRF6 MUTATED IRF6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6142 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1HA 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF6 MUTATED        1      0      1      0
  IRF6 WILD-TYPE     53     10     23     22
D1561V12, multiclass
[1] "Remove cluster labels:" "IRF6 MUTATED"          
clus
  IRF6 MUTATED IRF6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6142 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1HA 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" "IRF6 WILD-TYPE" 

Clustering(1562) Variable = LGALS9C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9C MUTATED        0      0      0      1
  LGALS9C WILD-TYPE     46     58     64     42
D1562V1, multiclass
[1] "Remove cluster labels:" "LGALS9C MUTATED"       
clus
  LGALS9C MUTATED LGALS9C WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LGALS9C MUTATED        0      0      1
  LGALS9C WILD-TYPE     51     83     76
D1562V2, multiclass
[1] "Remove cluster labels:" "LGALS9C MUTATED"       
clus
  LGALS9C MUTATED LGALS9C WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9C MUTATED        4      2      0      0
  LGALS9C WILD-TYPE    174    181    101     20
D1562V3, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               4               174
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LGALS9C MUTATED        2      1      2
  LGALS9C WILD-TYPE     85     79     98
D1562V4, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LGALS9C MUTATED        0      3      3
  LGALS9C WILD-TYPE     89    157    135
D1562V5, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LGALS9C MUTATED        3      2      1
  LGALS9C WILD-TYPE    179    131     71
D1562V6, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9C MUTATED        2      2      1      1
  LGALS9C WILD-TYPE    110     94     91    185
D1562V7, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LGALS9C MUTATED        1      1      2      1      1      0      0
  LGALS9C WILD-TYPE     59     49     47     39     62    125     99
D1562V8, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9C MUTATED        3      1      1      1
  LGALS9C WILD-TYPE    127     77     67    195
D1562V9, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LGALS9C MUTATED        0      1      0      2      1      0      2      0
  LGALS9C WILD-TYPE     40     61     28     78     68     48     41     28
                   vv
clus                CLUS_9
  LGALS9C MUTATED        0
  LGALS9C WILD-TYPE     74
D1562V10, multiclass
        clus
vv       LGALS9C MUTATED LGALS9C WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9C MUTATED        2      0      0      0
  LGALS9C WILD-TYPE     31     31     27     19
D1562V11, multiclass
[1] "Remove cluster labels:" "LGALS9C MUTATED"       
clus
  LGALS9C MUTATED LGALS9C WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6676        TCGA-CM-6677 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9C MUTATED        1      0      0      1
  LGALS9C WILD-TYPE     53     10     24     21
D1562V12, multiclass
[1] "Remove cluster labels:" "LGALS9C MUTATED"       
clus
  LGALS9C MUTATED LGALS9C WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6676        TCGA-CM-6677 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" "LGALS9C WILD-TYPE" 

Clustering(1563) Variable = ZNF512 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512 MUTATED        0      0      0      0
  ZNF512 WILD-TYPE     46     58     64     43
D1563V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF512 MUTATED        0      0      0
  ZNF512 WILD-TYPE     51     83     77
D1563V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512 MUTATED        0      2      0      1
  ZNF512 WILD-TYPE    178    181    101     19
D1563V3, multiclass
        clus
vv       ZNF512 MUTATED ZNF512 WILD-TYPE
  CLUS_1              0              178
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF512 MUTATED        2      1      0
  ZNF512 WILD-TYPE     85     79    100
D1563V4, multiclass
        clus
vv       ZNF512 MUTATED ZNF512 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF512 MUTATED        0      1      1
  ZNF512 WILD-TYPE     89    159    137
D1563V5, multiclass
[1] "Remove cluster labels:" "ZNF512 MUTATED"        
clus
  ZNF512 MUTATED ZNF512 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3525       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3742       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AH-6644       TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AY-6197       TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-4682       TCGA-AZ-5407       TCGA-AZ-6598 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6928       TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6317 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF512 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF512 MUTATED        1      1      0
  ZNF512 WILD-TYPE    181    132     72
D1563V6, multiclass
[1] "Remove cluster labels:" "ZNF512 MUTATED"        
clus
  ZNF512 MUTATED ZNF512 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3525       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3742       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AH-6644       TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AY-6197       TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-4682       TCGA-AZ-5407       TCGA-AZ-6598 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6928       TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6317 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF512 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512 MUTATED        2      1      0      0
  ZNF512 WILD-TYPE    110     95     92    186
D1563V7, multiclass
        clus
vv       ZNF512 MUTATED ZNF512 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              0               92
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF512 MUTATED        0      1      0      2      0      0      0
  ZNF512 WILD-TYPE     60     49     49     38     63    125     99
D1563V8, multiclass
        clus
vv       ZNF512 MUTATED ZNF512 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512 MUTATED        3      0      0      0
  ZNF512 WILD-TYPE    127     78     68    196
D1563V9, multiclass
        clus
vv       ZNF512 MUTATED ZNF512 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              0              196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF512 MUTATED        0      0      0      0      0      1      2      0
  ZNF512 WILD-TYPE     40     62     28     80     69     47     41     28
                  vv
clus               CLUS_9
  ZNF512 MUTATED        0
  ZNF512 WILD-TYPE     74
D1563V10, multiclass
        clus
vv       ZNF512 MUTATED ZNF512 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512 MUTATED        1      1      0      0
  ZNF512 WILD-TYPE     32     30     27     19
D1563V11, multiclass
[1] "Remove cluster labels:" "ZNF512 MUTATED"        
clus
  ZNF512 MUTATED ZNF512 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF512 MUTATED        2      0      0      0
  ZNF512 WILD-TYPE     52     10     24     22
D1563V12, multiclass
[1] "Remove cluster labels:" "ZNF512 MUTATED"        
clus
  ZNF512 MUTATED ZNF512 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" "ZNF512 WILD-TYPE" 

Clustering(1564) Variable = HIF1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF1A MUTATED        3      0      0      1
  HIF1A WILD-TYPE     43     58     64     42
D1564V1, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF1A MUTATED        3      0      1
  HIF1A WILD-TYPE     48     83     76
D1564V2, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF1A MUTATED       11      0      0      0
  HIF1A WILD-TYPE    167    183    101     20
D1564V3, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1            11             167
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF1A MUTATED        5      0      3
  HIF1A WILD-TYPE     82     80     97
D1564V4, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF1A MUTATED        1      4      7
  HIF1A WILD-TYPE     88    156    131
D1564V5, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIF1A MUTATED        7      4      1
  HIF1A WILD-TYPE    175    129     71
D1564V6, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF1A MUTATED        1      2      5      4
  HIF1A WILD-TYPE    111     94     87    182
D1564V7, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIF1A MUTATED        2      1      5      0      1      0      3
  HIF1A WILD-TYPE     58     49     44     40     62    125     96
D1564V8, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF1A MUTATED        2      4      0      5
  HIF1A WILD-TYPE    128     74     68    191
D1564V9, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             2             128
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIF1A MUTATED        0      4      0      2      3      0      1      0
  HIF1A WILD-TYPE     40     58     28     78     66     48     42     28
                 vv
clus              CLUS_9
  HIF1A MUTATED        1
  HIF1A WILD-TYPE     73
D1564V10, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF1A MUTATED        1      0      0      3
  HIF1A WILD-TYPE     32     31     27     16
D1564V11, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIF1A MUTATED        3      0      1      0
  HIF1A WILD-TYPE     51     10     23     22
D1564V12, multiclass
        clus
vv       HIF1A MUTATED HIF1A WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1565) Variable = CD79A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        2      0      0      1
  CD79A WILD-TYPE     44     58     64     42
D1565V1, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD79A MUTATED        3      0      0
  CD79A WILD-TYPE     48     83     77
D1565V2, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        5      0      1      0
  CD79A WILD-TYPE    173    183    100     20
D1565V3, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD79A MUTATED        1      0      2
  CD79A WILD-TYPE     86     80     98
D1565V4, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD79A MUTATED        1      2      3
  CD79A WILD-TYPE     88    158    135
D1565V5, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD79A MUTATED        2      2      2
  CD79A WILD-TYPE    180    131     70
D1565V6, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        0      2      1      3
  CD79A WILD-TYPE    112     94     91    183
D1565V7, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CD79A MUTATED        0      1      1      0      1      0      3
  CD79A WILD-TYPE     60     49     48     40     62    125     96
D1565V8, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        3      0      0      3
  CD79A WILD-TYPE    127     78     68    193
D1565V9, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CD79A MUTATED        0      0      1      0      4      0      1      0
  CD79A WILD-TYPE     40     62     27     80     65     48     42     28
                 vv
clus              CLUS_9
  CD79A MUTATED        0
  CD79A WILD-TYPE     74
D1565V10, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        1      0      0      0
  CD79A WILD-TYPE     32     31     27     19
D1565V11, multiclass
[1] "Remove cluster labels:" "CD79A MUTATED"         
clus
  CD79A MUTATED CD79A WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-G5-6641 
"CD79A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        1      0      0      0
  CD79A WILD-TYPE     53     10     24     22
D1565V12, multiclass
[1] "Remove cluster labels:" "CD79A MUTATED"         
clus
  CD79A MUTATED CD79A WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" "CD79A WILD-TYPE" 
     TCGA-G5-6641 
"CD79A WILD-TYPE" 

Clustering(1566) Variable = HIVEP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        2      0      0      4
  HIVEP1 WILD-TYPE     44     58     64     39
D1566V1, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED        2      2      2
  HIVEP1 WILD-TYPE     49     81     75
D1566V2, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED       13      3      4      0
  HIVEP1 WILD-TYPE    165    180     97     20
D1566V3, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              3              180
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED        4      2      8
  HIVEP1 WILD-TYPE     83     78     92
D1566V4, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED        2      7      9
  HIVEP1 WILD-TYPE     87    153    129
D1566V5, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED       12      5      1
  HIVEP1 WILD-TYPE    170    128     71
D1566V6, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             12              170
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        2      6      6      6
  HIVEP1 WILD-TYPE    110     90     86    180
D1566V7, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              6               86
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIVEP1 MUTATED        2      3      3      3      4      1      4
  HIVEP1 WILD-TYPE     58     47     46     37     59    124     95
D1566V8, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              3               37
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        8      4      1      6
  HIVEP1 WILD-TYPE    122     74     67    190
D1566V9, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIVEP1 MUTATED        4      4      1      3      4      0      1      1
  HIVEP1 WILD-TYPE     36     58     27     77     65     48     42     27
                  vv
clus               CLUS_9
  HIVEP1 MUTATED        1
  HIVEP1 WILD-TYPE     73
D1566V10, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        0      1      1      2
  HIVEP1 WILD-TYPE     33     30     26     17
D1566V11, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        2      1      1      0
  HIVEP1 WILD-TYPE     52      9     23     22
D1566V12, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1567) Variable = C1S MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1S MUTATED        1      0      0      4
  C1S WILD-TYPE     45     58     64     39
D1567V1, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1S MUTATED        3      0      2
  C1S WILD-TYPE     48     83     75
D1567V2, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           3            48
  CLUS_2           0            83
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1S MUTATED       11      1      1      0
  C1S WILD-TYPE    167    182    100     20
D1567V3, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1          11           167
  CLUS_2           1           182
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1S MUTATED        3      1      4
  C1S WILD-TYPE     84     79     96
D1567V4, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           3            84
  CLUS_2           1            79
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1S MUTATED        1      5      6
  C1S WILD-TYPE     88    155    132
D1567V5, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           1            88
  CLUS_2           5           155
  CLUS_3           6           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1S MUTATED        6      5      1
  C1S WILD-TYPE    176    128     71
D1567V6, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           6           176
  CLUS_2           5           128
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1S MUTATED        1      5      2      5
  C1S WILD-TYPE    111     91     90    181
D1567V7, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           1           111
  CLUS_2           5            91
  CLUS_3           2            90
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1S MUTATED        2      1      4      1      0      0      5
  C1S WILD-TYPE     58     49     45     39     63    125     94
D1567V8, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           2            58
  CLUS_2           1            49
  CLUS_3           4            45
  CLUS_4           1            39
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1S MUTATED        3      2      1      6
  C1S WILD-TYPE    127     76     67    190
D1567V9, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           3           127
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4           6           190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  C1S MUTATED        1      3      1      2      5      0      0      0      0
  C1S WILD-TYPE     39     59     27     78     64     48     43     28     74
D1567V10, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           1            39
  CLUS_2           3            59
  CLUS_3           1            27
  CLUS_4           2            78
  CLUS_5           5            64
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1S MUTATED        0      0      1      3
  C1S WILD-TYPE     33     31     26     16
D1567V11, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           1            26
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1S MUTATED        2      0      2      0
  C1S WILD-TYPE     52     10     22     22
D1567V12, multiclass
        clus
vv       C1S MUTATED C1S WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1568) Variable = OR8K3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K3 MUTATED        0      0      0      4
  OR8K3 WILD-TYPE     46     58     64     39
D1568V1, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K3 MUTATED        2      1      1
  OR8K3 WILD-TYPE     49     82     76
D1568V2, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K3 MUTATED        8      2      2      0
  OR8K3 WILD-TYPE    170    181     99     20
D1568V3, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K3 MUTATED        6      0      2
  OR8K3 WILD-TYPE     81     80     98
D1568V4, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K3 MUTATED        2      1      5
  OR8K3 WILD-TYPE     87    159    133
D1568V5, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K3 MUTATED        5      2      1
  OR8K3 WILD-TYPE    177    131     71
D1568V6, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K3 MUTATED        1      3      4      4
  OR8K3 WILD-TYPE    111     93     88    182
D1568V7, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR8K3 MUTATED        2      2      2      1      1      0      4
  OR8K3 WILD-TYPE     58     48     47     39     62    125     95
D1568V8, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K3 MUTATED        4      3      1      4
  OR8K3 WILD-TYPE    126     75     67    192
D1568V9, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR8K3 MUTATED        2      2      2      2      2      0      1      0
  OR8K3 WILD-TYPE     38     60     26     78     67     48     42     28
                 vv
clus              CLUS_9
  OR8K3 MUTATED        1
  OR8K3 WILD-TYPE     73
D1568V10, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K3 MUTATED        2      0      0      1
  OR8K3 WILD-TYPE     31     31     27     18
D1568V11, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K3 MUTATED        3      0      0      0
  OR8K3 WILD-TYPE     51     10     24     22
D1568V12, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1569) Variable = NUP210L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED        3      1      0      3
  NUP210L WILD-TYPE     43     57     64     40
D1569V1, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        4      2      1
  NUP210L WILD-TYPE     47     81     76
D1569V2, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED       16      4      1      3
  NUP210L WILD-TYPE    162    179    100     17
D1569V3, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1              16               162
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               3                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        7      2      8
  NUP210L WILD-TYPE     80     78     92
D1569V4, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               7                80
  CLUS_2               2                78
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        2      7     11
  NUP210L WILD-TYPE     87    153    127
D1569V5, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               2                87
  CLUS_2               7               153
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NUP210L MUTATED        9      8      3
  NUP210L WILD-TYPE    173    125     69
D1569V6, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               9               173
  CLUS_2               8               125
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED        4      6      6      8
  NUP210L WILD-TYPE    108     90     86    178
D1569V7, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               4               108
  CLUS_2               6                90
  CLUS_3               6                86
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP210L MUTATED        6      3      6      2      0      1      6
  NUP210L WILD-TYPE     54     47     43     38     63    124     93
D1569V8, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               6                54
  CLUS_2               3                47
  CLUS_3               6                43
  CLUS_4               2                38
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED       11      3      0      9
  NUP210L WILD-TYPE    119     75     68    187
D1569V9, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1              11               119
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP210L MUTATED        2      5      2      1      6      2      2      0
  NUP210L WILD-TYPE     38     57     26     79     63     46     41     28
                   vv
clus                CLUS_9
  NUP210L MUTATED        3
  NUP210L WILD-TYPE     71
D1569V10, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               6                63
  CLUS_6               2                46
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED        2      1      0      4
  NUP210L WILD-TYPE     31     30     27     15
D1569V11, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP210L MUTATED        5      0      1      1
  NUP210L WILD-TYPE     49     10     23     21
D1569V12, multiclass
        clus
vv       NUP210L MUTATED NUP210L WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1570) Variable = RRAGD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAGD MUTATED        0      0      0      1
  RRAGD WILD-TYPE     46     58     64     42
D1570V1, multiclass
[1] "Remove cluster labels:" "RRAGD MUTATED"         
clus
  RRAGD MUTATED RRAGD WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3560      TCGA-AA-3561 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAGD MUTATED        0      0      1
  RRAGD WILD-TYPE     51     83     76
D1570V2, multiclass
[1] "Remove cluster labels:" "RRAGD MUTATED"         
clus
  RRAGD MUTATED RRAGD WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3560      TCGA-AA-3561 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RRAGD WILD-TYPE" "RRAGD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAGD MUTATED        2      4      1      0
  RRAGD WILD-TYPE    176    179    100     20
D1570V3, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             2             176
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAGD MUTATED        2      1      3
  RRAGD WILD-TYPE     85     79     97
D1570V4, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAGD MUTATED        1      4      1
  RRAGD WILD-TYPE     88    156    137
D1570V5, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RRAGD MUTATED        0      4      2
  RRAGD WILD-TYPE    182    129     70
D1570V6, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             0             182
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAGD MUTATED        3      3      0      0
  RRAGD WILD-TYPE    109     93     92    186
D1570V7, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RRAGD MUTATED        2      3      0      0      1      0      0
  RRAGD WILD-TYPE     58     47     49     40     62    125     99
D1570V8, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAGD MUTATED        4      1      0      2
  RRAGD WILD-TYPE    126     77     68    194
D1570V9, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RRAGD MUTATED        2      1      1      0      0      1      0      0
  RRAGD WILD-TYPE     38     61     27     80     69     47     43     28
                 vv
clus              CLUS_9
  RRAGD MUTATED        2
  RRAGD WILD-TYPE     72
D1570V10, multiclass
        clus
vv       RRAGD MUTATED RRAGD WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAGD MUTATED        0      0      0      0
  RRAGD WILD-TYPE     33     31     27     19
D1570V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRAGD MUTATED        0      0      0      0
  RRAGD WILD-TYPE     54     10     24     22
D1570V12, multiclass

Clustering(1571) Variable = BLM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLM MUTATED        2      1      0      6
  BLM WILD-TYPE     44     57     64     37
D1571V1, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           2            44
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           6            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BLM MUTATED        5      2      2
  BLM WILD-TYPE     46     81     75
D1571V2, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           5            46
  CLUS_2           2            81
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLM MUTATED       17      1      0      1
  BLM WILD-TYPE    161    182    101     19
D1571V3, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1          17           161
  CLUS_2           1           182
  CLUS_3           0           101
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BLM MUTATED        5      0      5
  BLM WILD-TYPE     82     80     95
D1571V4, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           5            82
  CLUS_2           0            80
  CLUS_3           5            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BLM MUTATED        1      5      8
  BLM WILD-TYPE     88    155    130
D1571V5, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           1            88
  CLUS_2           5           155
  CLUS_3           8           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BLM MUTATED        6      7      1
  BLM WILD-TYPE    176    126     71
D1571V6, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           6           176
  CLUS_2           7           126
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLM MUTATED        1      5      4      9
  BLM WILD-TYPE    111     91     88    177
D1571V7, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           1           111
  CLUS_2           5            91
  CLUS_3           4            88
  CLUS_4           9           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BLM MUTATED        2      2      6      0      1      1      7
  BLM WILD-TYPE     58     48     43     40     62    124     92
D1571V8, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           2            58
  CLUS_2           2            48
  CLUS_3           6            43
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           7            92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLM MUTATED        4      3      1     10
  BLM WILD-TYPE    126     75     67    186
D1571V9, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           4           126
  CLUS_2           3            75
  CLUS_3           1            67
  CLUS_4          10           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BLM MUTATED        1      3      3      0      6      0      3      1      1
  BLM WILD-TYPE     39     59     25     80     63     48     40     27     73
D1571V10, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           1            39
  CLUS_2           3            59
  CLUS_3           3            25
  CLUS_4           0            80
  CLUS_5           6            63
  CLUS_6           0            48
  CLUS_7           3            40
  CLUS_8           1            27
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLM MUTATED        1      1      0      2
  BLM WILD-TYPE     32     30     27     17
D1571V11, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLM MUTATED        4      0      0      0
  BLM WILD-TYPE     50     10     24     22
D1571V12, multiclass
        clus
vv       BLM MUTATED BLM WILD-TYPE
  CLUS_1           4            50
  CLUS_2           0            10
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1572) Variable = CLCN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        2      0      1      2
  CLCN3 WILD-TYPE     44     58     63     41
D1572V1, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCN3 MUTATED        3      1      1
  CLCN3 WILD-TYPE     48     82     76
D1572V2, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED       10      2      1      0
  CLCN3 WILD-TYPE    168    181    100     20
D1572V3, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCN3 MUTATED        5      1      2
  CLCN3 WILD-TYPE     82     79     98
D1572V4, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCN3 MUTATED        1      2      9
  CLCN3 WILD-TYPE     88    158    129
D1572V5, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCN3 MUTATED        9      3      0
  CLCN3 WILD-TYPE    173    130     72
D1572V6, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        1      3      4      5
  CLCN3 WILD-TYPE    111     93     88    181
D1572V7, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLCN3 MUTATED        0      0      5      0      3      1      4
  CLCN3 WILD-TYPE     60     50     44     40     60    124     95
D1572V8, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        5      3      0      4
  CLCN3 WILD-TYPE    125     75     68    192
D1572V9, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLCN3 MUTATED        0      6      1      1      3      0      0      1
  CLCN3 WILD-TYPE     40     56     27     79     66     48     43     27
                 vv
clus              CLUS_9
  CLCN3 MUTATED        0
  CLCN3 WILD-TYPE     74
D1572V10, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        1      3      0      1
  CLCN3 WILD-TYPE     32     28     27     18
D1572V11, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCN3 MUTATED        4      1      0      0
  CLCN3 WILD-TYPE     50      9     24     22
D1572V12, multiclass
        clus
vv       CLCN3 MUTATED CLCN3 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1573) Variable = ANKRD40 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        1      0      2      1
  ANKRD40 WILD-TYPE     45     58     62     42
D1573V1, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               2                62
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        2      1      1
  ANKRD40 WILD-TYPE     49     82     76
D1573V2, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        6      2      0      1
  ANKRD40 WILD-TYPE    172    181    101     19
D1573V3, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        0      0      5
  ANKRD40 WILD-TYPE     87     80     95
D1573V4, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        2      3      2
  ANKRD40 WILD-TYPE     87    157    136
D1573V5, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               3               157
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        3      1      3
  ANKRD40 WILD-TYPE    179    132     69
D1573V6, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        0      3      2      4
  ANKRD40 WILD-TYPE    112     93     90    182
D1573V7, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD40 MUTATED        0      0      5      0      0      1      3
  ANKRD40 WILD-TYPE     60     50     44     40     63    124     96
D1573V8, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        4      0      1      4
  ANKRD40 WILD-TYPE    126     78     67    192
D1573V9, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD40 MUTATED        1      1      0      0      4      1      1      0
  ANKRD40 WILD-TYPE     39     61     28     80     65     47     42     28
                   vv
clus                CLUS_9
  ANKRD40 MUTATED        1
  ANKRD40 WILD-TYPE     73
D1573V10, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        0      0      0      3
  ANKRD40 WILD-TYPE     33     31     27     16
D1573V11, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        2      0      1      0
  ANKRD40 WILD-TYPE     52     10     23     22
D1573V12, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1574) Variable = SNAPC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        2      0      0      0
  SNAPC2 WILD-TYPE     44     58     64     43
D1574V1, multiclass
[1] "Remove cluster labels:" "SNAPC2 MUTATED"        
clus
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3517 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AY-4071 
"SNAPC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        2      0      0
  SNAPC2 WILD-TYPE     49     83     77
D1574V2, multiclass
[1] "Remove cluster labels:" "SNAPC2 MUTATED"        
clus
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3517 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AY-4071 
"SNAPC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        6      0      0      0
  SNAPC2 WILD-TYPE    172    183    101     20
D1574V3, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        0      0      4
  SNAPC2 WILD-TYPE     87     80     96
D1574V4, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        1      1      1
  SNAPC2 WILD-TYPE     88    159    137
D1574V5, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        1      1      1
  SNAPC2 WILD-TYPE    181    132     71
D1574V6, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        0      4      0      2
  SNAPC2 WILD-TYPE    112     92     92    184
D1574V7, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNAPC2 MUTATED        0      0      3      1      0      0      2
  SNAPC2 WILD-TYPE     60     50     46     39     63    125     97
D1574V8, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        4      0      0      2
  SNAPC2 WILD-TYPE    126     78     68    194
D1574V9, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SNAPC2 MUTATED        1      0      0      0      5      0      0      0
  SNAPC2 WILD-TYPE     39     62     28     80     64     48     43     28
                  vv
clus               CLUS_9
  SNAPC2 MUTATED        0
  SNAPC2 WILD-TYPE     74
D1574V10, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        0      0      0      1
  SNAPC2 WILD-TYPE     33     31     27     18
D1574V11, multiclass
[1] "Remove cluster labels:" "SNAPC2 MUTATED"        
clus
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-G5-6641 
"SNAPC2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        0      0      1      0
  SNAPC2 WILD-TYPE     54     10     23     22
D1574V12, multiclass
[1] "Remove cluster labels:" "SNAPC2 MUTATED"        
clus
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" "SNAPC2 WILD-TYPE" 
      TCGA-G5-6641 
"SNAPC2 WILD-TYPE" 

Clustering(1575) Variable = UPF3B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3B MUTATED        0      0      1      3
  UPF3B WILD-TYPE     46     58     63     40
D1575V1, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3B MUTATED        1      1      2
  UPF3B WILD-TYPE     50     82     75
D1575V2, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3B MUTATED        4      4      3      0
  UPF3B WILD-TYPE    174    179     98     20
D1575V3, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             4             174
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3B MUTATED        3      2      2
  UPF3B WILD-TYPE     84     78     98
D1575V4, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3B MUTATED        1      4      4
  UPF3B WILD-TYPE     88    156    134
D1575V5, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UPF3B MUTATED        4      3      2
  UPF3B WILD-TYPE    178    130     70
D1575V6, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3B MUTATED        2      1      3      5
  UPF3B WILD-TYPE    110     95     89    181
D1575V7, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UPF3B MUTATED        1      1      1      1      2      2      3
  UPF3B WILD-TYPE     59     49     48     39     61    123     96
D1575V8, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3B MUTATED        2      4      0      3
  UPF3B WILD-TYPE    128     74     68    193
D1575V9, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             2             128
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UPF3B MUTATED        1      2      2      3      0      1      0      0
  UPF3B WILD-TYPE     39     60     26     77     69     47     43     28
                 vv
clus              CLUS_9
  UPF3B MUTATED        0
  UPF3B WILD-TYPE     74
D1575V10, multiclass
        clus
vv       UPF3B MUTATED UPF3B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3B MUTATED        0      2      0      0
  UPF3B WILD-TYPE     33     29     27     19
D1575V11, multiclass
[1] "Remove cluster labels:" "UPF3B MUTATED"         
clus
  UPF3B MUTATED UPF3B WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6569 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPF3B MUTATED        0      0      0      2
  UPF3B WILD-TYPE     54     10     24     20
D1575V12, multiclass
[1] "Remove cluster labels:" "UPF3B MUTATED"         
clus
  UPF3B MUTATED UPF3B WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6569 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" "UPF3B WILD-TYPE" 

Clustering(1576) Variable = LMTK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        0      0      0      1
  LMTK3 WILD-TYPE     46     58     64     42
D1576V1, multiclass
[1] "Remove cluster labels:" "LMTK3 MUTATED"         
clus
  LMTK3 MUTATED LMTK3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        0      0      1
  LMTK3 WILD-TYPE     51     83     76
D1576V2, multiclass
[1] "Remove cluster labels:" "LMTK3 MUTATED"         
clus
  LMTK3 MUTATED LMTK3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"LMTK3 WILD-TYPE" "LMTK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED       13      2      1      0
  LMTK3 WILD-TYPE    165    181    100     20
D1576V3, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        6      2      7
  LMTK3 WILD-TYPE     81     78     93
D1576V4, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        1      6      8
  LMTK3 WILD-TYPE     88    154    130
D1576V5, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        8      6      1
  LMTK3 WILD-TYPE    174    127     71
D1576V6, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        3      6      6      1
  LMTK3 WILD-TYPE    109     90     86    185
D1576V7, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LMTK3 MUTATED        2      2      7      0      4      0      1
  LMTK3 WILD-TYPE     58     48     42     40     59    125     98
D1576V8, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             0              40
  CLUS_5             4              59
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        8      7      0      1
  LMTK3 WILD-TYPE    122     71     68    195
D1576V9, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             7              71
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LMTK3 MUTATED        2      7      2      0      3      1      1      0
  LMTK3 WILD-TYPE     38     55     26     80     66     47     42     28
                 vv
clus              CLUS_9
  LMTK3 MUTATED        0
  LMTK3 WILD-TYPE     74
D1576V10, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        0      1      0      4
  LMTK3 WILD-TYPE     33     30     27     15
D1576V11, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        2      1      2      0
  LMTK3 WILD-TYPE     52      9     22     22
D1576V12, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1577) Variable = FCAMR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCAMR MUTATED        0      0      1      1
  FCAMR WILD-TYPE     46     58     63     42
D1577V1, multiclass
[1] "Remove cluster labels:" "FCAMR MUTATED"         
clus
  FCAMR MUTATED FCAMR WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AY-4071 
"FCAMR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCAMR MUTATED        0      1      1
  FCAMR WILD-TYPE     51     82     76
D1577V2, multiclass
[1] "Remove cluster labels:" "FCAMR MUTATED"         
clus
  FCAMR MUTATED FCAMR WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" "FCAMR WILD-TYPE" 
     TCGA-AY-4071 
"FCAMR WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCAMR MUTATED       11      1      0      0
  FCAMR WILD-TYPE    167    182    101     20
D1577V3, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCAMR MUTATED        4      0      6
  FCAMR WILD-TYPE     83     80     94
D1577V4, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCAMR MUTATED        2      3      6
  FCAMR WILD-TYPE     87    157    132
D1577V5, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FCAMR MUTATED        4      5      2
  FCAMR WILD-TYPE    178    128     70
D1577V6, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCAMR MUTATED        0      5      5      2
  FCAMR WILD-TYPE    112     91     87    184
D1577V7, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FCAMR MUTATED        1      1      8      1      0      1      0
  FCAMR WILD-TYPE     59     49     41     39     63    124     99
D1577V8, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCAMR MUTATED        3      3      1      5
  FCAMR WILD-TYPE    127     75     67    191
D1577V9, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FCAMR MUTATED        1      3      0      0      6      0      0      0
  FCAMR WILD-TYPE     39     59     28     80     63     48     43     28
                 vv
clus              CLUS_9
  FCAMR MUTATED        2
  FCAMR WILD-TYPE     72
D1577V10, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCAMR MUTATED        1      0      0      4
  FCAMR WILD-TYPE     32     31     27     15
D1577V11, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCAMR MUTATED        2      0      3      0
  FCAMR WILD-TYPE     52     10     21     22
D1577V12, multiclass
        clus
vv       FCAMR MUTATED FCAMR WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1578) Variable = XCL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XCL2 MUTATED        1      0      0      0
  XCL2 WILD-TYPE     45     58     64     43
D1578V1, multiclass
[1] "Remove cluster labels:" "XCL2 MUTATED"          
clus
  XCL2 MUTATED XCL2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XCL2 MUTATED        1      0      0
  XCL2 WILD-TYPE     50     83     77
D1578V2, multiclass
[1] "Remove cluster labels:" "XCL2 MUTATED"          
clus
  XCL2 MUTATED XCL2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677     TCGA-A6-2678 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3809 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XCL2 MUTATED        2      2      0      0
  XCL2 WILD-TYPE    176    181    101     20
D1578V3, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XCL2 MUTATED        1      0      2
  XCL2 WILD-TYPE     86     80     98
D1578V4, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XCL2 MUTATED        0      2      1
  XCL2 WILD-TYPE     89    158    137
D1578V5, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XCL2 MUTATED        1      2      0
  XCL2 WILD-TYPE    181    131     72
D1578V6, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XCL2 MUTATED        0      2      1      1
  XCL2 WILD-TYPE    112     94     91    185
D1578V7, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XCL2 MUTATED        1      0      1      1      0      0      1
  XCL2 WILD-TYPE     59     50     48     39     63    125     98
D1578V8, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XCL2 MUTATED        2      0      1      1
  XCL2 WILD-TYPE    128     78     67    195
D1578V9, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  XCL2 MUTATED        0      0      0      1      2      0      1      0      0
  XCL2 WILD-TYPE     40     62     28     79     67     48     42     28     74
D1578V10, multiclass
        clus
vv       XCL2 MUTATED XCL2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XCL2 MUTATED        0      0      0      1
  XCL2 WILD-TYPE     33     31     27     18
D1578V11, multiclass
[1] "Remove cluster labels:" "XCL2 MUTATED"          
clus
  XCL2 MUTATED XCL2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-G5-6641 
"XCL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XCL2 MUTATED        0      0      1      0
  XCL2 WILD-TYPE     54     10     23     22
D1578V12, multiclass
[1] "Remove cluster labels:" "XCL2 MUTATED"          
clus
  XCL2 MUTATED XCL2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" "XCL2 WILD-TYPE" 
    TCGA-G5-6641 
"XCL2 WILD-TYPE" 

Clustering(1579) Variable = AASS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASS MUTATED        3      0      2      3
  AASS WILD-TYPE     43     58     62     40
D1579V1, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AASS MUTATED        4      1      3
  AASS WILD-TYPE     47     82     74
D1579V2, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASS MUTATED        9      2      2      0
  AASS WILD-TYPE    169    181     99     20
D1579V3, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AASS MUTATED        3      1      1
  AASS WILD-TYPE     84     79     99
D1579V4, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AASS MUTATED        3      3      3
  AASS WILD-TYPE     86    157    135
D1579V5, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            3             86
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AASS MUTATED        3      3      3
  AASS WILD-TYPE    179    130     69
D1579V6, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASS MUTATED        1      4      1      7
  AASS WILD-TYPE    111     92     91    179
D1579V7, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AASS MUTATED        2      0      3      1      0      1      6
  AASS WILD-TYPE     58     50     46     39     63    124     93
D1579V8, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASS MUTATED        3      0      2      8
  AASS WILD-TYPE    127     78     66    188
D1579V9, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            2             66
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AASS MUTATED        0      2      1      1      6      1      1      0      1
  AASS WILD-TYPE     40     60     27     79     63     47     42     28     73
D1579V10, multiclass
        clus
vv       AASS MUTATED AASS WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASS MUTATED        0      0      1      0
  AASS WILD-TYPE     33     31     26     19
D1579V11, multiclass
[1] "Remove cluster labels:" "AASS MUTATED"          
clus
  AASS MUTATED AASS WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-G5-6641 
"AASS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASS MUTATED        0      0      1      0
  AASS WILD-TYPE     54     10     23     22
D1579V12, multiclass
[1] "Remove cluster labels:" "AASS MUTATED"          
clus
  AASS MUTATED AASS WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" "AASS WILD-TYPE" 
    TCGA-G5-6641 
"AASS WILD-TYPE" 

Clustering(1580) Variable = CCNH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNH MUTATED        2      0      0      0
  CCNH WILD-TYPE     44     58     64     43
D1580V1, multiclass
[1] "Remove cluster labels:" "CCNH MUTATED"          
clus
  CCNH MUTATED CCNH WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AY-4071 
"CCNH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNH MUTATED        2      0      0
  CCNH WILD-TYPE     49     83     77
D1580V2, multiclass
[1] "Remove cluster labels:" "CCNH MUTATED"          
clus
  CCNH MUTATED CCNH WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" "CCNH WILD-TYPE" 
    TCGA-AY-4071 
"CCNH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNH MUTATED        5      1      1      0
  CCNH WILD-TYPE    173    182    100     20
D1580V3, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNH MUTATED        3      1      1
  CCNH WILD-TYPE     84     79     99
D1580V4, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNH MUTATED        0      0      6
  CCNH WILD-TYPE     89    160    132
D1580V5, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            0             89
  CLUS_2            0            160
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNH MUTATED        5      1      0
  CCNH WILD-TYPE    177    132     72
D1580V6, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNH MUTATED        1      0      4      2
  CCNH WILD-TYPE    111     96     88    184
D1580V7, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             96
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCNH MUTATED        1      1      2      0      1      0      2
  CCNH WILD-TYPE     59     49     47     40     62    125     97
D1580V8, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNH MUTATED        2      2      1      1
  CCNH WILD-TYPE    128     76     67    195
D1580V9, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CCNH MUTATED        0      3      0      0      1      0      2      0      0
  CCNH WILD-TYPE     40     59     28     80     68     48     41     28     74
D1580V10, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNH MUTATED        0      1      0      2
  CCNH WILD-TYPE     33     30     27     17
D1580V11, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNH MUTATED        3      0      0      0
  CCNH WILD-TYPE     51     10     24     22
D1580V12, multiclass
        clus
vv       CCNH MUTATED CCNH WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1581) Variable = ITGA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA4 MUTATED        1      1      0      4
  ITGA4 WILD-TYPE     45     57     64     39
D1581V1, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA4 MUTATED        1      2      3
  ITGA4 WILD-TYPE     50     81     74
D1581V2, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA4 MUTATED       12      4      1      0
  ITGA4 WILD-TYPE    166    179    100     20
D1581V3, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA4 MUTATED        2      3      6
  ITGA4 WILD-TYPE     85     77     94
D1581V4, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA4 MUTATED        3      5      6
  ITGA4 WILD-TYPE     86    155    132
D1581V5, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA4 MUTATED        7      6      1
  ITGA4 WILD-TYPE    175    127     71
D1581V6, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA4 MUTATED        2      5      3      7
  ITGA4 WILD-TYPE    110     91     89    179
D1581V7, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGA4 MUTATED        1      1      6      1      2      2      4
  ITGA4 WILD-TYPE     59     49     43     39     61    123     95
D1581V8, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA4 MUTATED        6      4      1      6
  ITGA4 WILD-TYPE    124     74     67    190
D1581V9, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITGA4 MUTATED        1      4      2      2      5      0      0      2
  ITGA4 WILD-TYPE     39     58     26     78     64     48     43     26
                 vv
clus              CLUS_9
  ITGA4 MUTATED        1
  ITGA4 WILD-TYPE     73
D1581V10, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA4 MUTATED        0      1      1      5
  ITGA4 WILD-TYPE     33     30     26     14
D1581V11, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA4 MUTATED        3      2      2      0
  ITGA4 WILD-TYPE     51      8     22     22
D1581V12, multiclass
        clus
vv       ITGA4 MUTATED ITGA4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             2               8
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1582) Variable = ST18 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST18 MUTATED        2      0      1      3
  ST18 WILD-TYPE     44     58     63     40
D1582V1, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST18 MUTATED        2      3      1
  ST18 WILD-TYPE     49     80     76
D1582V2, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            3             80
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST18 MUTATED       18      2      4      3
  ST18 WILD-TYPE    160    181     97     17
D1582V3, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            2            181
  CLUS_3            4             97
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST18 MUTATED        8      2     11
  ST18 WILD-TYPE     79     78     89
D1582V4, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            2             78
  CLUS_3           11             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST18 MUTATED        2      9     13
  ST18 WILD-TYPE     87    151    125
D1582V5, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            9            151
  CLUS_3           13            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST18 MUTATED       17      5      2
  ST18 WILD-TYPE    165    128     70
D1582V6, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1           17            165
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST18 MUTATED        2     10      8      7
  ST18 WILD-TYPE    110     86     84    179
D1582V7, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            2            110
  CLUS_2           10             86
  CLUS_3            8             84
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ST18 MUTATED        4      2      9      4      1      2      5
  ST18 WILD-TYPE     56     48     40     36     62    123     94
D1582V8, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            2             48
  CLUS_3            9             40
  CLUS_4            4             36
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST18 MUTATED       13      6      1      5
  ST18 WILD-TYPE    117     72     67    191
D1582V9, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1           13            117
  CLUS_2            6             72
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ST18 MUTATED        5      4      2      2      5      1      3      1      2
  ST18 WILD-TYPE     35     58     26     78     64     47     40     27     72
D1582V10, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            5             35
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST18 MUTATED        2      2      0      1
  ST18 WILD-TYPE     31     29     27     18
D1582V11, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST18 MUTATED        5      0      0      0
  ST18 WILD-TYPE     49     10     24     22
D1582V12, multiclass
        clus
vv       ST18 MUTATED ST18 WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1583) Variable = SECISBP2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SECISBP2 MUTATED        0      0      1      0
  SECISBP2 WILD-TYPE     46     58     63     43
D1583V1, multiclass
[1] "Remove cluster labels:" "SECISBP2 MUTATED"      
clus
  SECISBP2 MUTATED SECISBP2 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2683         TCGA-A6-3807 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SECISBP2 MUTATED        0      0      1
  SECISBP2 WILD-TYPE     51     83     76
D1583V2, multiclass
[1] "Remove cluster labels:" "SECISBP2 MUTATED"      
clus
  SECISBP2 MUTATED SECISBP2 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2683         TCGA-A6-3807 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SECISBP2 MUTATED        3      2      2      1
  SECISBP2 WILD-TYPE    175    181     99     19
D1583V3, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                2                181
  CLUS_3                2                 99
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SECISBP2 MUTATED        2      2      2
  SECISBP2 WILD-TYPE     85     78     98
D1583V4, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                2                 78
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SECISBP2 MUTATED        1      2      4
  SECISBP2 WILD-TYPE     88    158    134
D1583V5, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SECISBP2 MUTATED        4      3      0
  SECISBP2 WILD-TYPE    178    130     72
D1583V6, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SECISBP2 MUTATED        3      1      2      2
  SECISBP2 WILD-TYPE    109     95     90    184
D1583V7, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SECISBP2 MUTATED        2      0      1      2      1      0      2
  SECISBP2 WILD-TYPE     58     50     48     38     62    125     97
D1583V8, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                1                 48
  CLUS_4                2                 38
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SECISBP2 MUTATED        3      2      0      3
  SECISBP2 WILD-TYPE    127     76     68    193
D1583V9, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SECISBP2 MUTATED        0      2      1      2      2      0      1      0
  SECISBP2 WILD-TYPE     40     60     27     78     67     48     42     28
                    vv
clus                 CLUS_9
  SECISBP2 MUTATED        0
  SECISBP2 WILD-TYPE     74
D1583V10, multiclass
        clus
vv       SECISBP2 MUTATED SECISBP2 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SECISBP2 MUTATED        2      0      0      0
  SECISBP2 WILD-TYPE     31     31     27     19
D1583V11, multiclass
[1] "Remove cluster labels:" "SECISBP2 MUTATED"      
clus
  SECISBP2 MUTATED SECISBP2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6607 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6158         TCGA-DC-6681 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SECISBP2 MUTATED        2      0      0      0
  SECISBP2 WILD-TYPE     52     10     24     22
D1583V12, multiclass
[1] "Remove cluster labels:" "SECISBP2 MUTATED"      
clus
  SECISBP2 MUTATED SECISBP2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6607 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6158         TCGA-DC-6681 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" "SECISBP2 WILD-TYPE" 

Clustering(1584) Variable = GPX8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX8 MUTATED        0      0      0      1
  GPX8 WILD-TYPE     46     58     64     42
D1584V1, multiclass
[1] "Remove cluster labels:" "GPX8 MUTATED"          
clus
  GPX8 MUTATED GPX8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX8 MUTATED        0      0      1
  GPX8 WILD-TYPE     51     83     76
D1584V2, multiclass
[1] "Remove cluster labels:" "GPX8 MUTATED"          
clus
  GPX8 MUTATED GPX8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX8 MUTATED        3      0      0      0
  GPX8 WILD-TYPE    175    183    101     20
D1584V3, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX8 MUTATED        2      0      0
  GPX8 WILD-TYPE     85     80    100
D1584V4, multiclass
[1] "Remove cluster labels:" "GPX8 MUTATED"          
clus
  GPX8 MUTATED GPX8 WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3511 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662     TCGA-AA-3663 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713     TCGA-AD-5900 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889     TCGA-AD-6890 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681     TCGA-AZ-4682 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6622 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948     TCGA-CK-4950 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913     TCGA-CK-5914 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917     TCGA-CL-5918 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" "GPX8 WILD-TYPE" 
    TCGA-G5-6641 
"GPX8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX8 MUTATED        0      2      1
  GPX8 WILD-TYPE     89    158    137
D1584V5, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPX8 MUTATED        0      3      0
  GPX8 WILD-TYPE    182    130     72
D1584V6, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            0            182
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX8 MUTATED        0      1      0      2
  GPX8 WILD-TYPE    112     95     92    184
D1584V7, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            0             92
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPX8 MUTATED        1      1      0      0      0      0      1
  GPX8 WILD-TYPE     59     49     49     40     63    125     98
D1584V8, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX8 MUTATED        0      0      0      3
  GPX8 WILD-TYPE    130     78     68    193
D1584V9, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GPX8 MUTATED        0      0      0      0      1      0      0      0      2
  GPX8 WILD-TYPE     40     62     28     80     68     48     43     28     72
D1584V10, multiclass
        clus
vv       GPX8 MUTATED GPX8 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX8 MUTATED        0      0      0      0
  GPX8 WILD-TYPE     33     31     27     19
D1584V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPX8 MUTATED        0      0      0      0
  GPX8 WILD-TYPE     54     10     24     22
D1584V12, multiclass

Clustering(1585) Variable = C6ORF150 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        1      0      0      3
  C6ORF150 WILD-TYPE     45     58     64     40
D1585V1, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF150 MUTATED        2      1      1
  C6ORF150 WILD-TYPE     49     82     76
D1585V2, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        7      2      1      0
  C6ORF150 WILD-TYPE    171    181    100     20
D1585V3, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                7                171
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF150 MUTATED        4      0      2
  C6ORF150 WILD-TYPE     83     80     98
D1585V4, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                0                 80
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF150 MUTATED        1      4      5
  C6ORF150 WILD-TYPE     88    156    133
D1585V5, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                4                156
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF150 MUTATED        6      3      1
  C6ORF150 WILD-TYPE    176    130     71
D1585V6, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                3                130
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        0      0      5      5
  C6ORF150 WILD-TYPE    112     96     87    181
D1585V7, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                0                 96
  CLUS_3                5                 87
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF150 MUTATED        2      1      2      0      1      0      4
  C6ORF150 WILD-TYPE     58     49     47     40     62    125     95
D1585V8, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        4      1      0      4
  C6ORF150 WILD-TYPE    126     77     68    192
D1585V9, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF150 MUTATED        1      2      1      2      2      0      0      0
  C6ORF150 WILD-TYPE     39     60     27     78     67     48     43     28
                    vv
clus                 CLUS_9
  C6ORF150 MUTATED        1
  C6ORF150 WILD-TYPE     73
D1585V10, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        0      0      0      1
  C6ORF150 WILD-TYPE     33     31     27     18
D1585V11, multiclass
[1] "Remove cluster labels:" "C6ORF150 MUTATED"      
clus
  C6ORF150 MUTATED C6ORF150 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-G5-6641 
"C6ORF150 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        1      0      0      0
  C6ORF150 WILD-TYPE     53     10     24     22
D1585V12, multiclass
[1] "Remove cluster labels:" "C6ORF150 MUTATED"      
clus
  C6ORF150 MUTATED C6ORF150 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" "C6ORF150 WILD-TYPE" 
        TCGA-G5-6641 
"C6ORF150 WILD-TYPE" 

Clustering(1586) Variable = NAP1L4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L4 MUTATED        1      0      0      1
  NAP1L4 WILD-TYPE     45     58     64     42
D1586V1, multiclass
[1] "Remove cluster labels:" "NAP1L4 MUTATED"        
clus
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AY-4071 
"NAP1L4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L4 MUTATED        1      0      1
  NAP1L4 WILD-TYPE     50     83     76
D1586V2, multiclass
[1] "Remove cluster labels:" "NAP1L4 MUTATED"        
clus
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AY-4071 
"NAP1L4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L4 MUTATED        2      2      1      0
  NAP1L4 WILD-TYPE    176    181    100     20
D1586V3, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L4 MUTATED        2      1      1
  NAP1L4 WILD-TYPE     85     79     99
D1586V4, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L4 MUTATED        0      1      4
  NAP1L4 WILD-TYPE     89    159    134
D1586V5, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L4 MUTATED        3      2      0
  NAP1L4 WILD-TYPE    179    131     72
D1586V6, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L4 MUTATED        3      0      1      2
  NAP1L4 WILD-TYPE    109     96     91    184
D1586V7, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAP1L4 MUTATED        4      0      1      0      0      0      1
  NAP1L4 WILD-TYPE     56     50     48     40     63    125     98
D1586V8, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L4 MUTATED        2      0      2      2
  NAP1L4 WILD-TYPE    128     78     66    194
D1586V9, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              2               66
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NAP1L4 MUTATED        1      0      0      0      2      1      2      0
  NAP1L4 WILD-TYPE     39     62     28     80     67     47     41     28
                  vv
clus               CLUS_9
  NAP1L4 MUTATED        0
  NAP1L4 WILD-TYPE     74
D1586V10, multiclass
        clus
vv       NAP1L4 MUTATED NAP1L4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L4 MUTATED        1      0      0      1
  NAP1L4 WILD-TYPE     32     31     27     18
D1586V11, multiclass
[1] "Remove cluster labels:" "NAP1L4 MUTATED"        
clus
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A1D0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235       TCGA-G5-6641 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L4 MUTATED        1      0      0      1
  NAP1L4 WILD-TYPE     53     10     24     21
D1586V12, multiclass
[1] "Remove cluster labels:" "NAP1L4 MUTATED"        
clus
  NAP1L4 MUTATED NAP1L4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A1D0 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235       TCGA-G5-6641 
"NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" "NAP1L4 WILD-TYPE" 

Clustering(1587) Variable = MANF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANF MUTATED        1      0      0      0
  MANF WILD-TYPE     45     58     64     43
D1587V1, multiclass
[1] "Remove cluster labels:" "MANF MUTATED"          
clus
  MANF MUTATED MANF WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MANF WILD-TYPE" "MANF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MANF MUTATED        1      0      0
  MANF WILD-TYPE     50     83     77
D1587V2, multiclass
[1] "Remove cluster labels:" "MANF MUTATED"          
clus
  MANF MUTATED MANF WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MANF WILD-TYPE" "MANF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANF MUTATED        4      0      0      0
  MANF WILD-TYPE    174    183    101     20
D1587V3, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MANF MUTATED        2      0      2
  MANF WILD-TYPE     85     80     98
D1587V4, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MANF MUTATED        0      2      1
  MANF WILD-TYPE     89    158    137
D1587V5, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MANF MUTATED        2      0      1
  MANF WILD-TYPE    180    133     71
D1587V6, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            2            180
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANF MUTATED        0      1      2      1
  MANF WILD-TYPE    112     95     90    185
D1587V7, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MANF MUTATED        0      0      3      0      0      0      1
  MANF WILD-TYPE     60     50     46     40     63    125     98
D1587V8, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANF MUTATED        2      1      0      1
  MANF WILD-TYPE    128     77     68    195
D1587V9, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MANF MUTATED        1      1      0      2      0      0      0      0      0
  MANF WILD-TYPE     39     61     28     78     69     48     43     28     74
D1587V10, multiclass
        clus
vv       MANF MUTATED MANF WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANF MUTATED        1      0      0      0
  MANF WILD-TYPE     32     31     27     19
D1587V11, multiclass
[1] "Remove cluster labels:" "MANF MUTATED"          
clus
  MANF MUTATED MANF WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-G5-6641 
"MANF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MANF MUTATED        1      0      0      0
  MANF WILD-TYPE     53     10     24     22
D1587V12, multiclass
[1] "Remove cluster labels:" "MANF MUTATED"          
clus
  MANF MUTATED MANF WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" "MANF WILD-TYPE" 
    TCGA-G5-6641 
"MANF WILD-TYPE" 

Clustering(1588) Variable = CUX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        2      0      1      2
  CUX1 WILD-TYPE     44     58     63     41
D1588V1, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      2      1
  CUX1 WILD-TYPE     49     81     76
D1588V2, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED       14      1      2      0
  CUX1 WILD-TYPE    164    182     99     20
D1588V3, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        3      2      7
  CUX1 WILD-TYPE     84     78     93
D1588V4, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      7      5
  CUX1 WILD-TYPE     87    153    133
D1588V5, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        6      7      1
  CUX1 WILD-TYPE    176    126     71
D1588V6, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            7            126
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        2      6      4      5
  CUX1 WILD-TYPE    110     90     88    181
D1588V7, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            4             88
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUX1 MUTATED        0      1      8      0      1      2      5
  CUX1 WILD-TYPE     60     49     41     40     62    123     94
D1588V8, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            8             41
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        6      3      0      7
  CUX1 WILD-TYPE    124     75     68    189
D1588V9, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CUX1 MUTATED        1      4      1      1      8      0      0      1      0
  CUX1 WILD-TYPE     39     58     27     79     61     48     43     27     74
D1588V10, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            8             61
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        1      1      0      3
  CUX1 WILD-TYPE     32     30     27     16
D1588V11, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        2      1      2      0
  CUX1 WILD-TYPE     52      9     22     22
D1588V12, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1589) Variable = SLC16A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A5 MUTATED        3      1      0      0
  SLC16A5 WILD-TYPE     43     57     64     43
D1589V1, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A5 MUTATED        3      1      0
  SLC16A5 WILD-TYPE     48     82     77
D1589V2, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A5 MUTATED        5      4      0      0
  SLC16A5 WILD-TYPE    173    179    101     20
D1589V3, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A5 MUTATED        2      2      1
  SLC16A5 WILD-TYPE     85     78     99
D1589V4, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A5 MUTATED        1      1      7
  SLC16A5 WILD-TYPE     88    159    131
D1589V5, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A5 MUTATED        5      4      0
  SLC16A5 WILD-TYPE    177    129     72
D1589V6, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A5 MUTATED        3      1      2      4
  SLC16A5 WILD-TYPE    109     95     90    182
D1589V7, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC16A5 MUTATED        1      2      0      0      2      1      4
  SLC16A5 WILD-TYPE     59     48     49     40     61    124     95
D1589V8, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A5 MUTATED        1      3      1      5
  SLC16A5 WILD-TYPE    129     75     67    191
D1589V9, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC16A5 MUTATED        0      2      1      2      3      0      1      1
  SLC16A5 WILD-TYPE     40     60     27     78     66     48     42     27
                   vv
clus                CLUS_9
  SLC16A5 MUTATED        0
  SLC16A5 WILD-TYPE     74
D1589V10, multiclass
        clus
vv       SLC16A5 MUTATED SLC16A5 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A5 MUTATED        1      1      0      0
  SLC16A5 WILD-TYPE     32     30     27     19
D1589V11, multiclass
[1] "Remove cluster labels:" "SLC16A5 MUTATED"       
clus
  SLC16A5 MUTATED SLC16A5 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6653        TCGA-A6-6654 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A5 MUTATED        1      0      1      0
  SLC16A5 WILD-TYPE     53     10     23     22
D1589V12, multiclass
[1] "Remove cluster labels:" "SLC16A5 MUTATED"       
clus
  SLC16A5 MUTATED SLC16A5 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6653        TCGA-A6-6654 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" "SLC16A5 WILD-TYPE" 

Clustering(1590) Variable = TUBB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBB4 MUTATED        1      0      0      1
  TUBB4 WILD-TYPE     45     58     64     42
D1590V1, multiclass
[1] "Remove cluster labels:" "TUBB4 MUTATED"         
clus
  TUBB4 MUTATED TUBB4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3685 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866      TCGA-AA-3867 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AY-4071 
"TUBB4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBB4 MUTATED        2      0      0
  TUBB4 WILD-TYPE     49     83     77
D1590V2, multiclass
[1] "Remove cluster labels:" "TUBB4 MUTATED"         
clus
  TUBB4 MUTATED TUBB4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3685 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866      TCGA-AA-3867 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" "TUBB4 WILD-TYPE" 
     TCGA-AY-4071 
"TUBB4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBB4 MUTATED        6      1      0      0
  TUBB4 WILD-TYPE    172    182    101     20
D1590V3, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBB4 MUTATED        1      0      4
  TUBB4 WILD-TYPE     86     80     96
D1590V4, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBB4 MUTATED        1      4      1
  TUBB4 WILD-TYPE     88    156    137
D1590V5, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBB4 MUTATED        1      3      2
  TUBB4 WILD-TYPE    181    130     70
D1590V6, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBB4 MUTATED        1      2      2      2
  TUBB4 WILD-TYPE    111     94     90    184
D1590V7, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TUBB4 MUTATED        1      0      3      0      0      1      2
  TUBB4 WILD-TYPE     59     50     46     40     63    124     97
D1590V8, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBB4 MUTATED        2      1      0      4
  TUBB4 WILD-TYPE    128     77     68    192
D1590V9, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TUBB4 MUTATED        1      1      1      0      3      0      0      1
  TUBB4 WILD-TYPE     39     61     27     80     66     48     43     27
                 vv
clus              CLUS_9
  TUBB4 MUTATED        0
  TUBB4 WILD-TYPE     74
D1590V10, multiclass
        clus
vv       TUBB4 MUTATED TUBB4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBB4 MUTATED        0      0      0      0
  TUBB4 WILD-TYPE     33     31     27     19
D1590V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBB4 MUTATED        0      0      0      0
  TUBB4 WILD-TYPE     54     10     24     22
D1590V12, multiclass

Clustering(1591) Variable = SUPT3H MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT3H MUTATED        3      0      0      1
  SUPT3H WILD-TYPE     43     58     64     42
D1591V1, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT3H MUTATED        2      2      0
  SUPT3H WILD-TYPE     49     81     77
D1591V2, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT3H MUTATED        8      2      1      0
  SUPT3H WILD-TYPE    170    181    100     20
D1591V3, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT3H MUTATED        2      2      3
  SUPT3H WILD-TYPE     85     78     97
D1591V4, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT3H MUTATED        0      6      3
  SUPT3H WILD-TYPE     89    154    135
D1591V5, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT3H MUTATED        4      5      0
  SUPT3H WILD-TYPE    178    128     72
D1591V6, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              4              178
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT3H MUTATED        2      1      3      5
  SUPT3H WILD-TYPE    110     95     89    181
D1591V7, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SUPT3H MUTATED        0      2      2      0      2      1      4
  SUPT3H WILD-TYPE     60     48     47     40     61    124     95
D1591V8, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT3H MUTATED        2      3      0      6
  SUPT3H WILD-TYPE    128     75     68    190
D1591V9, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SUPT3H MUTATED        0      3      2      2      3      0      0      0
  SUPT3H WILD-TYPE     40     59     26     78     66     48     43     28
                  vv
clus               CLUS_9
  SUPT3H MUTATED        1
  SUPT3H WILD-TYPE     73
D1591V10, multiclass
        clus
vv       SUPT3H MUTATED SUPT3H WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT3H MUTATED        1      1      0      0
  SUPT3H WILD-TYPE     32     30     27     19
D1591V11, multiclass
[1] "Remove cluster labels:" "SUPT3H MUTATED"        
clus
  SUPT3H MUTATED SUPT3H WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CA-6718       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676       TCGA-CM-6677 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT3H MUTATED        1      1      0      0
  SUPT3H WILD-TYPE     53      9     24     22
D1591V12, multiclass
[1] "Remove cluster labels:" "SUPT3H MUTATED"        
clus
  SUPT3H MUTATED SUPT3H WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CA-6718       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676       TCGA-CM-6677 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" "SUPT3H WILD-TYPE" 

Clustering(1592) Variable = FAM151A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        1      0      0      0
  FAM151A WILD-TYPE     45     58     64     43
D1592V1, multiclass
[1] "Remove cluster labels:" "FAM151A MUTATED"       
clus
  FAM151A MUTATED FAM151A WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        1      0      0
  FAM151A WILD-TYPE     50     83     77
D1592V2, multiclass
[1] "Remove cluster labels:" "FAM151A MUTATED"       
clus
  FAM151A MUTATED FAM151A WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        5      0      0      1
  FAM151A WILD-TYPE    173    183    101     19
D1592V3, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        3      0      2
  FAM151A WILD-TYPE     84     80     98
D1592V4, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        0      1      5
  FAM151A WILD-TYPE     89    159    133
D1592V5, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        4      1      1
  FAM151A WILD-TYPE    178    132     71
D1592V6, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        0      2      3      1
  FAM151A WILD-TYPE    112     94     89    185
D1592V7, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM151A MUTATED        0      1      3      0      1      0      1
  FAM151A WILD-TYPE     60     49     46     40     62    125     98
D1592V8, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        2      2      0      2
  FAM151A WILD-TYPE    128     76     68    194
D1592V9, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM151A MUTATED        0      3      0      1      2      0      0      0
  FAM151A WILD-TYPE     40     59     28     79     67     48     43     28
                   vv
clus                CLUS_9
  FAM151A MUTATED        0
  FAM151A WILD-TYPE     74
D1592V10, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        0      0      0      1
  FAM151A WILD-TYPE     33     31     27     18
D1592V11, multiclass
[1] "Remove cluster labels:" "FAM151A MUTATED"       
clus
  FAM151A MUTATED FAM151A WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-G5-6641 
"FAM151A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        1      0      0      0
  FAM151A WILD-TYPE     53     10     24     22
D1592V12, multiclass
[1] "Remove cluster labels:" "FAM151A MUTATED"       
clus
  FAM151A MUTATED FAM151A WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" "FAM151A WILD-TYPE" 
       TCGA-G5-6641 
"FAM151A WILD-TYPE" 

Clustering(1593) Variable = HERC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC1 MUTATED        7      1      0      3
  HERC1 WILD-TYPE     39     57     64     40
D1593V1, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC1 MUTATED        7      3      1
  HERC1 WILD-TYPE     44     80     76
D1593V2, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC1 MUTATED       23      5      4      0
  HERC1 WILD-TYPE    155    178     97     20
D1593V3, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1            23             155
  CLUS_2             5             178
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC1 MUTATED        2      5     15
  HERC1 WILD-TYPE     85     75     85
D1593V4, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             5              75
  CLUS_3            15              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC1 MUTATED        2     12     12
  HERC1 WILD-TYPE     87    148    126
D1593V5, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2            12             148
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HERC1 MUTATED        9     12      5
  HERC1 WILD-TYPE    173    121     67
D1593V6, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2            12             121
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC1 MUTATED        9      9      5     10
  HERC1 WILD-TYPE    103     87     87    176
D1593V7, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             9             103
  CLUS_2             9              87
  CLUS_3             5              87
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HERC1 MUTATED        7      6      8      1      1      2      8
  HERC1 WILD-TYPE     53     44     41     39     62    123     91
D1593V8, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             6              44
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC1 MUTATED       12      3      3     14
  HERC1 WILD-TYPE    118     75     65    182
D1593V9, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             3              75
  CLUS_3             3              65
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HERC1 MUTATED        2      3      2      8      9      2      3      1
  HERC1 WILD-TYPE     38     59     26     72     60     46     40     27
                 vv
clus              CLUS_9
  HERC1 MUTATED        2
  HERC1 WILD-TYPE     72
D1593V10, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             8              72
  CLUS_5             9              60
  CLUS_6             2              46
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC1 MUTATED        0      0      1      4
  HERC1 WILD-TYPE     33     31     26     15
D1593V11, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HERC1 MUTATED        2      0      3      0
  HERC1 WILD-TYPE     52     10     21     22
D1593V12, multiclass
        clus
vv       HERC1 MUTATED HERC1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1594) Variable = TBX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        1      0      0      3
  TBX4 WILD-TYPE     45     58     64     40
D1594V1, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        3      1      0
  TBX4 WILD-TYPE     48     82     77
D1594V2, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        9      0      2      0
  TBX4 WILD-TYPE    169    183     99     20
D1594V3, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        2      0      5
  TBX4 WILD-TYPE     85     80     95
D1594V4, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        2      3      5
  TBX4 WILD-TYPE     87    157    133
D1594V5, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        5      2      3
  TBX4 WILD-TYPE    177    131     69
D1594V6, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        0      5      2      4
  TBX4 WILD-TYPE    112     91     90    182
D1594V7, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TBX4 MUTATED        0      1      6      0      0      0      4
  TBX4 WILD-TYPE     60     49     43     40     63    125     95
D1594V8, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        3      2      0      5
  TBX4 WILD-TYPE    127     76     68    191
D1594V9, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TBX4 MUTATED        0      3      2      0      4      0      0      1      0
  TBX4 WILD-TYPE     40     59     26     80     65     48     43     27     74
D1594V10, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        0      0      0      3
  TBX4 WILD-TYPE     33     31     27     16
D1594V11, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        2      0      1      0
  TBX4 WILD-TYPE     52     10     23     22
D1594V12, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1595) Variable = TRIP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        0      0      0      1
  TRIP6 WILD-TYPE     46     58     64     42
D1595V1, multiclass
[1] "Remove cluster labels:" "TRIP6 MUTATED"         
clus
  TRIP6 MUTATED TRIP6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP6 MUTATED        0      0      1
  TRIP6 WILD-TYPE     51     83     76
D1595V2, multiclass
[1] "Remove cluster labels:" "TRIP6 MUTATED"         
clus
  TRIP6 MUTATED TRIP6 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"TRIP6 WILD-TYPE" "TRIP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        9      0      2      0
  TRIP6 WILD-TYPE    169    183     99     20
D1595V3, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP6 MUTATED        2      0      8
  TRIP6 WILD-TYPE     85     80     92
D1595V4, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP6 MUTATED        2      2      4
  TRIP6 WILD-TYPE     87    158    134
D1595V5, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP6 MUTATED        4      3      1
  TRIP6 WILD-TYPE    178    130     71
D1595V6, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        0      6      5      0
  TRIP6 WILD-TYPE    112     90     87    186
D1595V7, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIP6 MUTATED        0      1      8      1      0      0      1
  TRIP6 WILD-TYPE     60     49     41     39     63    125     98
D1595V8, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        6      3      0      2
  TRIP6 WILD-TYPE    124     75     68    194
D1595V9, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIP6 MUTATED        1      3      0      2      4      0      1      0
  TRIP6 WILD-TYPE     39     59     28     78     65     48     42     28
                 vv
clus              CLUS_9
  TRIP6 MUTATED        0
  TRIP6 WILD-TYPE     74
D1595V10, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        0      1      0      4
  TRIP6 WILD-TYPE     33     30     27     15
D1595V11, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        3      0      1      1
  TRIP6 WILD-TYPE     51     10     23     21
D1595V12, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1596) Variable = SERPINB5 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB5 MUTATED        0      1      0      0
  SERPINB5 WILD-TYPE     46     57     64     43
D1596V1, multiclass
[1] "Remove cluster labels:" "SERPINB5 MUTATED"      
clus
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01Q 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02W 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3608 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3611         TCGA-AG-3726 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB5 MUTATED        0      1      0
  SERPINB5 WILD-TYPE     51     82     77
D1596V2, multiclass
[1] "Remove cluster labels:" "SERPINB5 MUTATED"      
clus
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01Q 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02W 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3608 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3611         TCGA-AG-3726 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB5 MUTATED        3      3      0      0
  SERPINB5 WILD-TYPE    175    180    101     20
D1596V3, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB5 MUTATED        1      1      3
  SERPINB5 WILD-TYPE     86     79     97
D1596V4, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB5 MUTATED        0      3      3
  SERPINB5 WILD-TYPE     89    157    135
D1596V5, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                3                157
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB5 MUTATED        3      2      1
  SERPINB5 WILD-TYPE    179    131     71
D1596V6, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                2                131
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB5 MUTATED        1      2      2      1
  SERPINB5 WILD-TYPE    111     94     90    185
D1596V7, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                 94
  CLUS_3                2                 90
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERPINB5 MUTATED        1      1      1      0      1      1      1
  SERPINB5 WILD-TYPE     59     49     48     40     62    124     98
D1596V8, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB5 MUTATED        0      3      2      1
  SERPINB5 WILD-TYPE    130     75     66    195
D1596V9, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                0                130
  CLUS_2                3                 75
  CLUS_3                2                 66
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SERPINB5 MUTATED        0      3      0      0      1      0      1      0
  SERPINB5 WILD-TYPE     40     59     28     80     68     48     42     28
                    vv
clus                 CLUS_9
  SERPINB5 MUTATED        1
  SERPINB5 WILD-TYPE     73
D1596V10, multiclass
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB5 MUTATED        0      0      0      0
  SERPINB5 WILD-TYPE     33     31     27     19
D1596V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB5 MUTATED        0      0      0      0
  SERPINB5 WILD-TYPE     54     10     24     22
D1596V12, multiclass

Clustering(1597) Variable = HIPK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK3 MUTATED        1      0      0      2
  HIPK3 WILD-TYPE     45     58     64     41
D1597V1, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK3 MUTATED        2      0      1
  HIPK3 WILD-TYPE     49     83     76
D1597V2, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK3 MUTATED        5      1      2      0
  HIPK3 WILD-TYPE    173    182     99     20
D1597V3, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK3 MUTATED        2      1      2
  HIPK3 WILD-TYPE     85     79     98
D1597V4, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK3 MUTATED        3      2      1
  HIPK3 WILD-TYPE     86    158    137
D1597V5, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIPK3 MUTATED        3      1      2
  HIPK3 WILD-TYPE    179    132     70
D1597V6, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK3 MUTATED        1      3      1      3
  HIPK3 WILD-TYPE    111     93     91    183
D1597V7, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIPK3 MUTATED        1      1      2      1      1      0      2
  HIPK3 WILD-TYPE     59     49     47     39     62    125     97
D1597V8, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK3 MUTATED        2      2      1      3
  HIPK3 WILD-TYPE    128     76     67    193
D1597V9, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIPK3 MUTATED        0      3      0      1      4      0      0      0
  HIPK3 WILD-TYPE     40     59     28     79     65     48     43     28
                 vv
clus              CLUS_9
  HIPK3 MUTATED        0
  HIPK3 WILD-TYPE     74
D1597V10, multiclass
        clus
vv       HIPK3 MUTATED HIPK3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK3 MUTATED        0      1      1      0
  HIPK3 WILD-TYPE     33     30     26     19
D1597V11, multiclass
[1] "Remove cluster labels:" "HIPK3 MUTATED"         
clus
  HIPK3 MUTATED HIPK3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIPK3 MUTATED        1      0      1      0
  HIPK3 WILD-TYPE     53     10     23     22
D1597V12, multiclass
[1] "Remove cluster labels:" "HIPK3 MUTATED"         
clus
  HIPK3 MUTATED HIPK3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" "HIPK3 WILD-TYPE" 

Clustering(1598) Variable = NLRP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP11 MUTATED        5      0      1      2
  NLRP11 WILD-TYPE     41     58     63     41
D1598V1, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP11 MUTATED        5      1      2
  NLRP11 WILD-TYPE     46     82     75
D1598V2, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP11 MUTATED       15      3      2      0
  NLRP11 WILD-TYPE    163    180     99     20
D1598V3, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP11 MUTATED        6      2      4
  NLRP11 WILD-TYPE     81     78     96
D1598V4, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP11 MUTATED        3      4     11
  NLRP11 WILD-TYPE     86    156    127
D1598V5, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NLRP11 MUTATED       10      5      3
  NLRP11 WILD-TYPE    172    128     69
D1598V6, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1             10              172
  CLUS_2              5              128
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP11 MUTATED        2      6      3      9
  NLRP11 WILD-TYPE    110     90     89    177
D1598V7, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP11 MUTATED        1      2      4      2      2      2      7
  NLRP11 WILD-TYPE     59     48     45     38     61    123     92
D1598V8, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP11 MUTATED        2      3      3      9
  NLRP11 WILD-TYPE    128     75     65    187
D1598V9, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              3               65
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NLRP11 MUTATED        1      2      1      2      4      0      3      2
  NLRP11 WILD-TYPE     39     60     27     78     65     48     40     26
                  vv
clus               CLUS_9
  NLRP11 MUTATED        2
  NLRP11 WILD-TYPE     72
D1598V10, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP11 MUTATED        2      0      2      2
  NLRP11 WILD-TYPE     31     31     25     17
D1598V11, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP11 MUTATED        3      0      2      1
  NLRP11 WILD-TYPE     51     10     22     21
D1598V12, multiclass
        clus
vv       NLRP11 MUTATED NLRP11 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1599) Variable = DZIP1L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DZIP1L MUTATED        2      1      0      2
  DZIP1L WILD-TYPE     44     57     64     41
D1599V1, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DZIP1L MUTATED        2      2      1
  DZIP1L WILD-TYPE     49     81     76
D1599V2, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DZIP1L MUTATED       11      2      2      1
  DZIP1L WILD-TYPE    167    181     99     19
D1599V3, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1             11              167
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DZIP1L MUTATED        4      3      4
  DZIP1L WILD-TYPE     83     77     96
D1599V4, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DZIP1L MUTATED        0      7      7
  DZIP1L WILD-TYPE     89    153    131
D1599V5, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DZIP1L MUTATED        6      7      1
  DZIP1L WILD-TYPE    176    126     71
D1599V6, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              6              176
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DZIP1L MUTATED        5      3      3      5
  DZIP1L WILD-TYPE    107     93     89    181
D1599V7, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              5              107
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DZIP1L MUTATED        3      1      5      0      2      1      4
  DZIP1L WILD-TYPE     57     49     44     40     61    124     95
D1599V8, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DZIP1L MUTATED        6      3      0      7
  DZIP1L WILD-TYPE    124     75     68    189
D1599V9, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DZIP1L MUTATED        0      3      1      2      7      2      0      0
  DZIP1L WILD-TYPE     40     59     27     78     62     46     43     28
                  vv
clus               CLUS_9
  DZIP1L MUTATED        1
  DZIP1L WILD-TYPE     73
D1599V10, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DZIP1L MUTATED        0      1      0      4
  DZIP1L WILD-TYPE     33     30     27     15
D1599V11, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DZIP1L MUTATED        2      0      2      1
  DZIP1L WILD-TYPE     52     10     22     21
D1599V12, multiclass
        clus
vv       DZIP1L MUTATED DZIP1L WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1600) Variable = GSG2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSG2 MUTATED        1      0      1      0
  GSG2 WILD-TYPE     45     58     63     43
D1600V1, multiclass
[1] "Remove cluster labels:" "GSG2 MUTATED"          
clus
  GSG2 MUTATED GSG2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3858 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AY-4071 
"GSG2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSG2 MUTATED        0      2      0
  GSG2 WILD-TYPE     51     81     77
D1600V2, multiclass
[1] "Remove cluster labels:" "GSG2 MUTATED"          
clus
  GSG2 MUTATED GSG2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3858 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AY-4071 
"GSG2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSG2 MUTATED        5      0      0      1
  GSG2 WILD-TYPE    173    183    101     19
D1600V3, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSG2 MUTATED        0      0      4
  GSG2 WILD-TYPE     87     80     96
D1600V4, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSG2 MUTATED        2      2      1
  GSG2 WILD-TYPE     87    158    137
D1600V5, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSG2 MUTATED        2      2      1
  GSG2 WILD-TYPE    180    131     71
D1600V6, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSG2 MUTATED        0      3      1      2
  GSG2 WILD-TYPE    112     93     91    184
D1600V7, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSG2 MUTATED        0      1      3      0      0      2      0
  GSG2 WILD-TYPE     60     49     46     40     63    123     99
D1600V8, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSG2 MUTATED        3      0      0      3
  GSG2 WILD-TYPE    127     78     68    193
D1600V9, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GSG2 MUTATED        1      1      0      2      1      0      0      0      1
  GSG2 WILD-TYPE     39     61     28     78     68     48     43     28     73
D1600V10, multiclass
        clus
vv       GSG2 MUTATED GSG2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSG2 MUTATED        0      0      0      1
  GSG2 WILD-TYPE     33     31     27     18
D1600V11, multiclass
[1] "Remove cluster labels:" "GSG2 MUTATED"          
clus
  GSG2 MUTATED GSG2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-G5-6641 
"GSG2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSG2 MUTATED        1      0      0      0
  GSG2 WILD-TYPE     53     10     24     22
D1600V12, multiclass
[1] "Remove cluster labels:" "GSG2 MUTATED"          
clus
  GSG2 MUTATED GSG2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" "GSG2 WILD-TYPE" 
    TCGA-G5-6641 
"GSG2 WILD-TYPE" 

Clustering(1601) Variable = FAM193A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        1      0      0      0
  FAM193A WILD-TYPE     45     58     64     43
D1601V1, multiclass
[1] "Remove cluster labels:" "FAM193A MUTATED"       
clus
  FAM193A MUTATED FAM193A WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3949        TCGA-AA-3950 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED        1      0      0
  FAM193A WILD-TYPE     50     83     77
D1601V2, multiclass
[1] "Remove cluster labels:" "FAM193A MUTATED"       
clus
  FAM193A MUTATED FAM193A WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3949        TCGA-AA-3950 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM193A WILD-TYPE" "FAM193A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED       14      0      3      0
  FAM193A WILD-TYPE    164    183     98     20
D1601V3, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1              14               164
  CLUS_2               0               183
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED        4      1     11
  FAM193A WILD-TYPE     83     79     89
D1601V4, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               4                83
  CLUS_2               1                79
  CLUS_3              11                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED        0      3      8
  FAM193A WILD-TYPE     89    157    130
D1601V5, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED        7      3      1
  FAM193A WILD-TYPE    175    130     71
D1601V6, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               7               175
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        1      8      7      1
  FAM193A WILD-TYPE    111     88     85    185
D1601V7, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               8                88
  CLUS_3               7                85
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM193A MUTATED        0      3     12      0      1      0      1
  FAM193A WILD-TYPE     60     47     37     40     62    125     98
D1601V8, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               0                60
  CLUS_2               3                47
  CLUS_3              12                37
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        9      4      0      4
  FAM193A WILD-TYPE    121     74     68    192
D1601V9, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               9               121
  CLUS_2               4                74
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM193A MUTATED        1      6      3      2      5      0      0      0
  FAM193A WILD-TYPE     39     56     25     78     64     48     43     28
                   vv
clus                CLUS_9
  FAM193A MUTATED        0
  FAM193A WILD-TYPE     74
D1601V10, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               6                56
  CLUS_3               3                25
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        1      0      0      3
  FAM193A WILD-TYPE     32     31     27     16
D1601V11, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        3      0      1      0
  FAM193A WILD-TYPE     51     10     23     22
D1601V12, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1602) Variable = ENC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENC1 MUTATED        1      0      1      1
  ENC1 WILD-TYPE     45     58     63     42
D1602V1, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENC1 MUTATED        1      1      1
  ENC1 WILD-TYPE     50     82     76
D1602V2, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENC1 MUTATED        7      4      2      0
  ENC1 WILD-TYPE    171    179     99     20
D1602V3, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENC1 MUTATED        2      3      5
  ENC1 WILD-TYPE     85     77     95
D1602V4, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3             77
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENC1 MUTATED        0      5      6
  ENC1 WILD-TYPE     89    155    132
D1602V5, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ENC1 MUTATED        4      6      1
  ENC1 WILD-TYPE    178    127     71
D1602V6, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENC1 MUTATED        4      5      1      3
  ENC1 WILD-TYPE    108     91     91    183
D1602V7, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENC1 MUTATED        3      2      3      0      1      0      4
  ENC1 WILD-TYPE     57     48     46     40     62    125     95
D1602V8, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENC1 MUTATED        7      1      0      5
  ENC1 WILD-TYPE    123     77     68    191
D1602V9, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ENC1 MUTATED        1      1      3      1      2      0      1      1      3
  ENC1 WILD-TYPE     39     61     25     79     67     48     42     27     71
D1602V10, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENC1 MUTATED        1      1      0      1
  ENC1 WILD-TYPE     32     30     27     18
D1602V11, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENC1 MUTATED        0      1      2      0
  ENC1 WILD-TYPE     54      9     22     22
D1602V12, multiclass
        clus
vv       ENC1 MUTATED ENC1 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1603) Variable = RUSC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        1      0      1      3
  RUSC2 WILD-TYPE     45     58     63     40
D1603V1, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED        3      1      1
  RUSC2 WILD-TYPE     48     82     76
D1603V2, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED       11      1      1      0
  RUSC2 WILD-TYPE    167    182    100     20
D1603V3, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED        2      1      5
  RUSC2 WILD-TYPE     85     79     95
D1603V4, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED        4      3      5
  RUSC2 WILD-TYPE     85    157    133
D1603V5, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED        7      3      2
  RUSC2 WILD-TYPE    175    130     70
D1603V6, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        1      3      4      5
  RUSC2 WILD-TYPE    111     93     88    181
D1603V7, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUSC2 MUTATED        0      0      5      2      0      1      5
  RUSC2 WILD-TYPE     60     50     44     38     63    124     94
D1603V8, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        4      1      0      8
  RUSC2 WILD-TYPE    126     77     68    188
D1603V9, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RUSC2 MUTATED        1      2      1      0      7      1      1      0
  RUSC2 WILD-TYPE     39     60     27     80     62     47     42     28
                 vv
clus              CLUS_9
  RUSC2 MUTATED        0
  RUSC2 WILD-TYPE     74
D1603V10, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        1      0      0      2
  RUSC2 WILD-TYPE     32     31     27     17
D1603V11, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        2      0      1      0
  RUSC2 WILD-TYPE     52     10     23     22
D1603V12, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1604) Variable = WHAMM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHAMM MUTATED        1      0      0      2
  WHAMM WILD-TYPE     45     58     64     41
D1604V1, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WHAMM MUTATED        1      2      0
  WHAMM WILD-TYPE     50     81     77
D1604V2, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHAMM MUTATED        4      2      0      0
  WHAMM WILD-TYPE    174    181    101     20
D1604V3, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WHAMM MUTATED        1      1      2
  WHAMM WILD-TYPE     86     79     98
D1604V4, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WHAMM MUTATED        2      1      2
  WHAMM WILD-TYPE     87    159    136
D1604V5, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WHAMM MUTATED        1      2      2
  WHAMM WILD-TYPE    181    131     70
D1604V6, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHAMM MUTATED        0      1      3      2
  WHAMM WILD-TYPE    112     95     89    184
D1604V7, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WHAMM MUTATED        0      1      1      0      1      1      2
  WHAMM WILD-TYPE     60     49     48     40     62    124     97
D1604V8, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHAMM MUTATED        0      2      0      4
  WHAMM WILD-TYPE    130     76     68    192
D1604V9, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             0             130
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WHAMM MUTATED        0      2      1      0      1      0      0      1
  WHAMM WILD-TYPE     40     60     27     80     68     48     43     27
                 vv
clus              CLUS_9
  WHAMM MUTATED        1
  WHAMM WILD-TYPE     73
D1604V10, multiclass
        clus
vv       WHAMM MUTATED WHAMM WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHAMM MUTATED        0      0      0      0
  WHAMM WILD-TYPE     33     31     27     19
D1604V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHAMM MUTATED        0      0      0      0
  WHAMM WILD-TYPE     54     10     24     22
D1604V12, multiclass

Clustering(1605) Variable = TAF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1 MUTATED        1      2      0      5
  TAF1 WILD-TYPE     45     56     64     38
D1605V1, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            2             56
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF1 MUTATED        3      3      2
  TAF1 WILD-TYPE     48     80     75
D1605V2, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1 MUTATED       14      6      6      0
  TAF1 WILD-TYPE    164    177     95     20
D1605V3, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            6            177
  CLUS_3            6             95
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF1 MUTATED        7      7      3
  TAF1 WILD-TYPE     80     73     97
D1605V4, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            7             80
  CLUS_2            7             73
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF1 MUTATED        4      8     11
  TAF1 WILD-TYPE     85    152    127
D1605V5, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            8            152
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF1 MUTATED       10      7      6
  TAF1 WILD-TYPE    172    126     66
D1605V6, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            7            126
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1 MUTATED        5      5      8      8
  TAF1 WILD-TYPE    107     91     84    178
D1605V7, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            5             91
  CLUS_3            8             84
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAF1 MUTATED        4      1      6      1      6      2      6
  TAF1 WILD-TYPE     56     49     43     39     57    123     93
D1605V8, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            6             57
  CLUS_6            2            123
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1 MUTATED        7      6      4      8
  TAF1 WILD-TYPE    123     72     64    188
D1605V9, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            6             72
  CLUS_3            4             64
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TAF1 MUTATED        3      6      3      2      7      1      2      0      1
  TAF1 WILD-TYPE     37     56     25     78     62     47     41     28     73
D1605V10, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            6             56
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            7             62
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1 MUTATED        2      2      1      3
  TAF1 WILD-TYPE     31     29     26     16
D1605V11, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1 MUTATED        2      2      3      1
  TAF1 WILD-TYPE     52      8     21     21
D1605V12, multiclass
        clus
vv       TAF1 MUTATED TAF1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            2              8
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1606) Variable = METTL5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL5 MUTATED        1      0      0      1
  METTL5 WILD-TYPE     45     58     64     42
D1606V1, multiclass
[1] "Remove cluster labels:" "METTL5 MUTATED"        
clus
  METTL5 MUTATED METTL5 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AY-4071 
"METTL5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL5 MUTATED        1      0      1
  METTL5 WILD-TYPE     50     83     76
D1606V2, multiclass
[1] "Remove cluster labels:" "METTL5 MUTATED"        
clus
  METTL5 MUTATED METTL5 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AY-4071 
"METTL5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL5 MUTATED        4      2      0      0
  METTL5 WILD-TYPE    174    181    101     20
D1606V3, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL5 MUTATED        0      1      3
  METTL5 WILD-TYPE     87     79     97
D1606V4, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL5 MUTATED        0      3      3
  METTL5 WILD-TYPE     89    157    135
D1606V5, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL5 MUTATED        1      4      1
  METTL5 WILD-TYPE    181    129     71
D1606V6, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL5 MUTATED        1      2      1      2
  METTL5 WILD-TYPE    111     94     91    184
D1606V7, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  METTL5 MUTATED        1      2      2      0      0      0      1
  METTL5 WILD-TYPE     59     48     47     40     63    125     98
D1606V8, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL5 MUTATED        4      0      0      2
  METTL5 WILD-TYPE    126     78     68    194
D1606V9, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  METTL5 MUTATED        1      0      1      0      4      0      0      0
  METTL5 WILD-TYPE     39     62     27     80     65     48     43     28
                  vv
clus               CLUS_9
  METTL5 MUTATED        0
  METTL5 WILD-TYPE     74
D1606V10, multiclass
        clus
vv       METTL5 MUTATED METTL5 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL5 MUTATED        1      0      0      1
  METTL5 WILD-TYPE     32     31     27     18
D1606V11, multiclass
[1] "Remove cluster labels:" "METTL5 MUTATED"        
clus
  METTL5 MUTATED METTL5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL5 MUTATED        1      0      1      0
  METTL5 WILD-TYPE     53     10     23     22
D1606V12, multiclass
[1] "Remove cluster labels:" "METTL5 MUTATED"        
clus
  METTL5 MUTATED METTL5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" "METTL5 WILD-TYPE" 

Clustering(1607) Variable = ITPRIPL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPRIPL1 MUTATED        1      0      0      1
  ITPRIPL1 WILD-TYPE     45     58     64     42
D1607V1, multiclass
[1] "Remove cluster labels:" "ITPRIPL1 MUTATED"      
clus
  ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3950 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ITPRIPL1 MUTATED        1      0      1
  ITPRIPL1 WILD-TYPE     50     83     76
D1607V2, multiclass
[1] "Remove cluster labels:" "ITPRIPL1 MUTATED"      
clus
  ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3950 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A008         TCGA-AG-A00C 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPRIPL1 MUTATED        6      1      1      0
  ITPRIPL1 WILD-TYPE    172    182    100     20
D1607V3, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ITPRIPL1 MUTATED        5      0      1
  ITPRIPL1 WILD-TYPE     82     80     99
D1607V4, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                5                 82
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ITPRIPL1 MUTATED        2      1      4
  ITPRIPL1 WILD-TYPE     87    159    134
D1607V5, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                1                159
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ITPRIPL1 MUTATED        5      2      0
  ITPRIPL1 WILD-TYPE    177    131     72
D1607V6, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPRIPL1 MUTATED        0      2      4      2
  ITPRIPL1 WILD-TYPE    112     94     88    184
D1607V7, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                4                 88
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITPRIPL1 MUTATED        1      2      3      1      0      0      1
  ITPRIPL1 WILD-TYPE     59     48     46     39     63    125     98
D1607V8, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                3                 46
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPRIPL1 MUTATED        1      2      0      5
  ITPRIPL1 WILD-TYPE    129     76     68    191
D1607V9, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITPRIPL1 MUTATED        0      3      1      0      1      0      1      1
  ITPRIPL1 WILD-TYPE     40     59     27     80     68     48     42     27
                    vv
clus                 CLUS_9
  ITPRIPL1 MUTATED        1
  ITPRIPL1 WILD-TYPE     73
D1607V10, multiclass
        clus
vv       ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPRIPL1 MUTATED        2      0      0      0
  ITPRIPL1 WILD-TYPE     31     31     27     19
D1607V11, multiclass
[1] "Remove cluster labels:" "ITPRIPL1 MUTATED"      
clus
  ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPRIPL1 MUTATED        2      0      0      0
  ITPRIPL1 WILD-TYPE     52     10     24     22
D1607V12, multiclass
[1] "Remove cluster labels:" "ITPRIPL1 MUTATED"      
clus
  ITPRIPL1 MUTATED ITPRIPL1 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" "ITPRIPL1 WILD-TYPE" 

Clustering(1608) Variable = WFS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFS1 MUTATED        0      0      0      1
  WFS1 WILD-TYPE     46     58     64     42
D1608V1, multiclass
[1] "Remove cluster labels:" "WFS1 MUTATED"          
clus
  WFS1 MUTATED WFS1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WFS1 MUTATED        0      0      1
  WFS1 WILD-TYPE     51     83     76
D1608V2, multiclass
[1] "Remove cluster labels:" "WFS1 MUTATED"          
clus
  WFS1 MUTATED WFS1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"WFS1 WILD-TYPE" "WFS1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFS1 MUTATED        9      3      0      0
  WFS1 WILD-TYPE    169    180    101     20
D1608V3, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WFS1 MUTATED        3      2      6
  WFS1 WILD-TYPE     84     78     94
D1608V4, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WFS1 MUTATED        3      2      5
  WFS1 WILD-TYPE     86    158    133
D1608V5, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WFS1 MUTATED        7      2      1
  WFS1 WILD-TYPE    175    131     71
D1608V6, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFS1 MUTATED        2      2      7      1
  WFS1 WILD-TYPE    110     94     85    185
D1608V7, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            7             85
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WFS1 MUTATED        0      1      6      1      3      1      0
  WFS1 WILD-TYPE     60     49     43     39     60    124     99
D1608V8, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFS1 MUTATED        5      6      0      0
  WFS1 WILD-TYPE    125     72     68    196
D1608V9, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            6             72
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WFS1 MUTATED        2      6      0      2      1      0      0      0      0
  WFS1 WILD-TYPE     38     56     28     78     68     48     43     28     74
D1608V10, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFS1 MUTATED        2      0      1      3
  WFS1 WILD-TYPE     31     31     26     16
D1608V11, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFS1 MUTATED        4      0      2      0
  WFS1 WILD-TYPE     50     10     22     22
D1608V12, multiclass
        clus
vv       WFS1 MUTATED WFS1 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1609) Variable = GOT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOT1 MUTATED        3      0      0      2
  GOT1 WILD-TYPE     43     58     64     41
D1609V1, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GOT1 MUTATED        2      2      1
  GOT1 WILD-TYPE     49     81     76
D1609V2, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOT1 MUTATED        4      1      0      1
  GOT1 WILD-TYPE    174    182    101     19
D1609V3, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GOT1 MUTATED        0      0      1
  GOT1 WILD-TYPE     87     80     99
D1609V4, multiclass
[1] "Remove cluster labels:" "GOT1 MUTATED"          
clus
  GOT1 MUTATED GOT1 WILD-TYPE 
             1            266 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5660 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664     TCGA-A6-5665 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649     TCGA-A6-6651 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654     TCGA-A6-6780 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3492 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510     TCGA-AA-3511 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662     TCGA-AA-3663 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713     TCGA-AD-5900 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889     TCGA-AD-6890 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DM-A28H     TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-G4-6588     TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
    TCGA-G5-6235     TCGA-G5-6641 
"GOT1 WILD-TYPE" "GOT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GOT1 MUTATED        1      4      0
  GOT1 WILD-TYPE     88    156    138
D1609V5, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GOT1 MUTATED        1      3      1
  GOT1 WILD-TYPE    181    130     71
D1609V6, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOT1 MUTATED        1      0      0      5
  GOT1 WILD-TYPE    111     96     92    181
D1609V7, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             96
  CLUS_3            0             92
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GOT1 MUTATED        1      0      0      0      1      1      3
  GOT1 WILD-TYPE     59     50     49     40     62    124     96
D1609V8, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOT1 MUTATED        1      0      0      5
  GOT1 WILD-TYPE    129     78     68    191
D1609V9, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GOT1 MUTATED        0      0      2      1      3      0      0      0      0
  GOT1 WILD-TYPE     40     62     26     79     66     48     43     28     74
D1609V10, multiclass
        clus
vv       GOT1 MUTATED GOT1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOT1 MUTATED        0      0      0      0
  GOT1 WILD-TYPE     33     31     27     19
D1609V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOT1 MUTATED        0      0      0      0
  GOT1 WILD-TYPE     54     10     24     22
D1609V12, multiclass

Clustering(1610) Variable = SRGAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRGAP3 MUTATED        3      1      0      2
  SRGAP3 WILD-TYPE     43     57     64     41
D1610V1, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRGAP3 MUTATED        3      0      3
  SRGAP3 WILD-TYPE     48     83     74
D1610V2, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRGAP3 MUTATED       11      4      2      1
  SRGAP3 WILD-TYPE    167    179     99     19
D1610V3, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRGAP3 MUTATED        5      1      7
  SRGAP3 WILD-TYPE     82     79     93
D1610V4, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRGAP3 MUTATED        2      5      8
  SRGAP3 WILD-TYPE     87    155    130
D1610V5, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRGAP3 MUTATED        9      5      1
  SRGAP3 WILD-TYPE    173    128     71
D1610V6, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRGAP3 MUTATED        2      3      8      6
  SRGAP3 WILD-TYPE    110     93     84    180
D1610V7, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              8               84
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRGAP3 MUTATED        2      2      7      0      3      0      5
  SRGAP3 WILD-TYPE     58     48     42     40     60    125     94
D1610V8, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRGAP3 MUTATED        4      6      0      9
  SRGAP3 WILD-TYPE    126     72     68    187
D1610V9, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              6               72
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SRGAP3 MUTATED        1      8      0      2      8      0      0      0
  SRGAP3 WILD-TYPE     39     54     28     78     61     48     43     28
                  vv
clus               CLUS_9
  SRGAP3 MUTATED        0
  SRGAP3 WILD-TYPE     74
D1610V10, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              8               54
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRGAP3 MUTATED        2      0      0      2
  SRGAP3 WILD-TYPE     31     31     27     17
D1610V11, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRGAP3 MUTATED        3      0      1      0
  SRGAP3 WILD-TYPE     51     10     23     22
D1610V12, multiclass
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1611) Variable = MTMR8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR8 MUTATED        3      0      0      1
  MTMR8 WILD-TYPE     43     58     64     42
D1611V1, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR8 MUTATED        3      0      1
  MTMR8 WILD-TYPE     48     83     76
D1611V2, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR8 MUTATED        7      4      4      0
  MTMR8 WILD-TYPE    171    179     97     20
D1611V3, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR8 MUTATED        6      2      3
  MTMR8 WILD-TYPE     81     78     97
D1611V4, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR8 MUTATED        1      4      7
  MTMR8 WILD-TYPE     88    156    131
D1611V5, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR8 MUTATED        4      5      3
  MTMR8 WILD-TYPE    178    128     69
D1611V6, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR8 MUTATED        6      3      2      4
  MTMR8 WILD-TYPE    106     93     90    182
D1611V7, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTMR8 MUTATED        2      1      2      4      3      0      3
  MTMR8 WILD-TYPE     58     49     47     36     60    125     96
D1611V8, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             4              36
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR8 MUTATED        6      4      1      4
  MTMR8 WILD-TYPE    124     74     67    192
D1611V9, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MTMR8 MUTATED        6      3      0      0      4      0      2      0
  MTMR8 WILD-TYPE     34     59     28     80     65     48     41     28
                 vv
clus              CLUS_9
  MTMR8 MUTATED        0
  MTMR8 WILD-TYPE     74
D1611V10, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             6              34
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR8 MUTATED        1      2      0      0
  MTMR8 WILD-TYPE     32     29     27     19
D1611V11, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR8 MUTATED        3      0      0      0
  MTMR8 WILD-TYPE     51     10     24     22
D1611V12, multiclass
        clus
vv       MTMR8 MUTATED MTMR8 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1612) Variable = GAB3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB3 MUTATED        3      1      1      2
  GAB3 WILD-TYPE     43     57     63     41
D1612V1, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB3 MUTATED        3      2      2
  GAB3 WILD-TYPE     48     81     75
D1612V2, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB3 MUTATED       10      2      0      0
  GAB3 WILD-TYPE    168    181    101     20
D1612V3, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB3 MUTATED        3      0      2
  GAB3 WILD-TYPE     84     80     98
D1612V4, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB3 MUTATED        2      3      4
  GAB3 WILD-TYPE     87    157    134
D1612V5, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB3 MUTATED        6      3      0
  GAB3 WILD-TYPE    176    130     72
D1612V6, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB3 MUTATED        2      1      2      7
  GAB3 WILD-TYPE    110     95     90    179
D1612V7, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAB3 MUTATED        0      1      2      0      1      3      5
  GAB3 WILD-TYPE     60     49     47     40     62    122     94
D1612V8, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            3            122
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB3 MUTATED        2      3      0      5
  GAB3 WILD-TYPE    128     75     68    191
D1612V9, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GAB3 MUTATED        0      2      1      4      1      0      0      1      1
  GAB3 WILD-TYPE     40     60     27     76     68     48     43     27     73
D1612V10, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            4             76
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB3 MUTATED        0      1      1      1
  GAB3 WILD-TYPE     33     30     26     18
D1612V11, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB3 MUTATED        2      0      1      0
  GAB3 WILD-TYPE     52     10     23     22
D1612V12, multiclass
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1613) Variable = GIMAP5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP5 MUTATED        1      0      0      5
  GIMAP5 WILD-TYPE     45     58     64     38
D1613V1, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP5 MUTATED        3      0      3
  GIMAP5 WILD-TYPE     48     83     74
D1613V2, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP5 MUTATED        4      3      0      1
  GIMAP5 WILD-TYPE    174    180    101     19
D1613V3, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP5 MUTATED        0      0      2
  GIMAP5 WILD-TYPE     87     80     98
D1613V4, multiclass
[1] "Remove cluster labels:" "GIMAP5 MUTATED"        
clus
  GIMAP5 MUTATED GIMAP5 WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5660 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664       TCGA-A6-5665 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649       TCGA-A6-6651 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6652       TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3492       TCGA-AA-3496 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AA-3502       TCGA-AA-3510       TCGA-AA-3511       TCGA-AA-3655 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AA-3660       TCGA-AA-3662       TCGA-AA-3663       TCGA-AA-3697 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AA-3712       TCGA-AA-3713       TCGA-AD-5900       TCGA-AD-6548 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-6888       TCGA-AD-6889       TCGA-AD-6890       TCGA-AD-6895 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-6899       TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693       TCGA-AF-4110 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AG-3742       TCGA-AG-A01W       TCGA-AG-A01Y 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N       TCGA-AG-A036 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004       TCGA-AY-5543 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386       TCGA-AZ-4315 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681       TCGA-AZ-4682 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6622 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948       TCGA-CK-4950 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913       TCGA-CK-5914 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917       TCGA-CL-5918 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-5538 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929       TCGA-D5-6930 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000       TCGA-DC-5337 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G5-6641 
"GIMAP5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP5 MUTATED        2      4      2
  GIMAP5 WILD-TYPE     87    156    136
D1613V5, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP5 MUTATED        4      2      2
  GIMAP5 WILD-TYPE    178    131     70
D1613V6, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP5 MUTATED        1      1      0      6
  GIMAP5 WILD-TYPE    111     95     92    180
D1613V7, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              0               92
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GIMAP5 MUTATED        1      0      1      0      1      2      3
  GIMAP5 WILD-TYPE     59     50     48     40     62    123     96
D1613V8, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP5 MUTATED        1      0      1      5
  GIMAP5 WILD-TYPE    129     78     67    191
D1613V9, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GIMAP5 MUTATED        0      0      1      0      4      0      0      0
  GIMAP5 WILD-TYPE     40     62     27     80     65     48     43     28
                  vv
clus               CLUS_9
  GIMAP5 MUTATED        2
  GIMAP5 WILD-TYPE     72
D1613V10, multiclass
        clus
vv       GIMAP5 MUTATED GIMAP5 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP5 MUTATED        0      0      0      1
  GIMAP5 WILD-TYPE     33     31     27     18
D1613V11, multiclass
[1] "Remove cluster labels:" "GIMAP5 MUTATED"        
clus
  GIMAP5 MUTATED GIMAP5 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G5-6641 
"GIMAP5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP5 MUTATED        0      0      1      0
  GIMAP5 WILD-TYPE     54     10     23     22
D1613V12, multiclass
[1] "Remove cluster labels:" "GIMAP5 MUTATED"        
clus
  GIMAP5 MUTATED GIMAP5 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" "GIMAP5 WILD-TYPE" 
      TCGA-G5-6641 
"GIMAP5 WILD-TYPE" 

Clustering(1614) Variable = ZEB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB1 MUTATED        3      0      2      3
  ZEB1 WILD-TYPE     43     58     62     40
D1614V1, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB1 MUTATED        6      2      0
  ZEB1 WILD-TYPE     45     81     77
D1614V2, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB1 MUTATED       15      4      4      0
  ZEB1 WILD-TYPE    163    179     97     20
D1614V3, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            4            179
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB1 MUTATED        6      2      5
  ZEB1 WILD-TYPE     81     78     95
D1614V4, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            2             78
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB1 MUTATED        5      9      6
  ZEB1 WILD-TYPE     84    151    132
D1614V5, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            5             84
  CLUS_2            9            151
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZEB1 MUTATED        7      8      5
  ZEB1 WILD-TYPE    175    125     67
D1614V6, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            8            125
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB1 MUTATED        1      6      5     11
  ZEB1 WILD-TYPE    111     90     87    175
D1614V7, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            5             87
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZEB1 MUTATED        0      3      4      1      3      2     10
  ZEB1 WILD-TYPE     60     47     45     39     60    123     89
D1614V8, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB1 MUTATED        4      5      2     11
  ZEB1 WILD-TYPE    126     73     66    185
D1614V9, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZEB1 MUTATED        3      6      1      2      6      0      0      1      3
  ZEB1 WILD-TYPE     37     56     27     78     63     48     43     27     71
D1614V10, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            6             56
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB1 MUTATED        1      0      2      2
  ZEB1 WILD-TYPE     32     31     25     17
D1614V11, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZEB1 MUTATED        2      1      2      0
  ZEB1 WILD-TYPE     52      9     22     22
D1614V12, multiclass
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1615) Variable = CATSPER4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER4 MUTATED        1      1      1      2
  CATSPER4 WILD-TYPE     45     57     63     41
D1615V1, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                1                 57
  CLUS_3                1                 63
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER4 MUTATED        2      1      2
  CATSPER4 WILD-TYPE     49     82     75
D1615V2, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER4 MUTATED       10      2      0      1
  CATSPER4 WILD-TYPE    168    181    101     19
D1615V3, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1               10                168
  CLUS_2                2                181
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER4 MUTATED        3      0      5
  CATSPER4 WILD-TYPE     84     80     95
D1615V4, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER4 MUTATED        0      6      4
  CATSPER4 WILD-TYPE     89    154    134
D1615V5, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                6                154
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CATSPER4 MUTATED        3      6      1
  CATSPER4 WILD-TYPE    179    127     71
D1615V6, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                6                127
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER4 MUTATED        0      3      6      4
  CATSPER4 WILD-TYPE    112     93     86    182
D1615V7, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                6                 86
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CATSPER4 MUTATED        1      2      4      0      2      2      2
  CATSPER4 WILD-TYPE     59     48     45     40     61    123     97
D1615V8, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                2                123
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER4 MUTATED        2      4      0      7
  CATSPER4 WILD-TYPE    128     74     68    189
D1615V9, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                4                 74
  CLUS_3                0                 68
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CATSPER4 MUTATED        1      4      1      2      4      0      0      1
  CATSPER4 WILD-TYPE     39     58     27     78     65     48     43     27
                    vv
clus                 CLUS_9
  CATSPER4 MUTATED        0
  CATSPER4 WILD-TYPE     74
D1615V10, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                4                 58
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER4 MUTATED        1      1      0      1
  CATSPER4 WILD-TYPE     32     30     27     18
D1615V11, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CATSPER4 MUTATED        3      0      0      0
  CATSPER4 WILD-TYPE     51     10     24     22
D1615V12, multiclass
        clus
vv       CATSPER4 MUTATED CATSPER4 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1616) Variable = ERN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      0      1      0
  ERN1 WILD-TYPE     46     58     63     43
D1616V1, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        0      1      0
  ERN1 WILD-TYPE     51     82     77
D1616V2, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        1      2      0      0
  ERN1 WILD-TYPE    177    181    101     20
D1616V3, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            177
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      0      1
  ERN1 WILD-TYPE     86     80     99
D1616V4, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AD-6890     TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AF-2693     TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-4681     TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6603 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5861     TCGA-CM-5862 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G5-6641 
"ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      0      2
  ERN1 WILD-TYPE     88    160    136
D1616V5, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            0            160
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        2      0      1
  ERN1 WILD-TYPE    180    133     71
D1616V6, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      0      2      1
  ERN1 WILD-TYPE    112     96     90    185
D1616V7, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERN1 MUTATED        0      1      1      0      0      1      0
  ERN1 WILD-TYPE     60     49     48     40     63    124     99
D1616V8, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        1      1      1      0
  ERN1 WILD-TYPE    129     77     67    196
D1616V9, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ERN1 MUTATED        1      1      0      0      0      0      0      0      1
  ERN1 WILD-TYPE     39     61     28     80     69     48     43     28     73
D1616V10, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        1      0      0      1
  ERN1 WILD-TYPE     32     31     27     18
D1616V11, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        2      0      0      0
  ERN1 WILD-TYPE     52     10     24     22
D1616V12, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 

Clustering(1617) Variable = HECW2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW2 MUTATED        4      0      1      5
  HECW2 WILD-TYPE     42     58     63     38
D1617V1, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW2 MUTATED        6      1      3
  HECW2 WILD-TYPE     45     82     74
D1617V2, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW2 MUTATED       22      4      6      0
  HECW2 WILD-TYPE    156    179     95     20
D1617V3, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             4             179
  CLUS_3             6              95
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW2 MUTATED        9      7      5
  HECW2 WILD-TYPE     78     73     95
D1617V4, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             7              73
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW2 MUTATED        3      8     15
  HECW2 WILD-TYPE     86    152    123
D1617V5, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             8             152
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW2 MUTATED       13     11      2
  HECW2 WILD-TYPE    169    122     70
D1617V6, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1            13             169
  CLUS_2            11             122
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW2 MUTATED        7      5     10     10
  HECW2 WILD-TYPE    105     91     82    176
D1617V7, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             7             105
  CLUS_2             5              91
  CLUS_3            10              82
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HECW2 MUTATED        4      4      8      3      3      1      9
  HECW2 WILD-TYPE     56     46     41     37     60    124     90
D1617V8, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             4              46
  CLUS_3             8              41
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW2 MUTATED        7      9      2     13
  HECW2 WILD-TYPE    123     69     66    183
D1617V9, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             9              69
  CLUS_3             2              66
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HECW2 MUTATED        0     10      3      4      7      2      1      1
  HECW2 WILD-TYPE     40     52     25     76     62     46     42     27
                 vv
clus              CLUS_9
  HECW2 MUTATED        3
  HECW2 WILD-TYPE     71
D1617V10, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2            10              52
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW2 MUTATED        1      4      1      4
  HECW2 WILD-TYPE     32     27     26     15
D1617V11, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             4              27
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW2 MUTATED        5      1      2      2
  HECW2 WILD-TYPE     49      9     22     20
D1617V12, multiclass
        clus
vv       HECW2 MUTATED HECW2 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1618) Variable = CASP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP6 MUTATED        1      0      0      1
  CASP6 WILD-TYPE     45     58     64     42
D1618V1, multiclass
[1] "Remove cluster labels:" "CASP6 MUTATED"         
clus
  CASP6 MUTATED CASP6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00F      TCGA-AA-A00J 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-4071 
"CASP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP6 MUTATED        1      0      1
  CASP6 WILD-TYPE     50     83     76
D1618V2, multiclass
[1] "Remove cluster labels:" "CASP6 MUTATED"         
clus
  CASP6 MUTATED CASP6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00F      TCGA-AA-A00J 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-4071 
"CASP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP6 MUTATED        3      0      0      0
  CASP6 WILD-TYPE    175    183    101     20
D1618V3, multiclass
        clus
vv       CASP6 MUTATED CASP6 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP6 MUTATED        1      0      0
  CASP6 WILD-TYPE     86     80    100
D1618V4, multiclass
[1] "Remove cluster labels:" "CASP6 MUTATED"         
clus
  CASP6 MUTATED CASP6 WILD-TYPE 
              1             266 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3663      TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6890      TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-2693      TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6718 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-5862      TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP6 MUTATED        0      2      1
  CASP6 WILD-TYPE     89    158    137
D1618V5, multiclass
        clus
vv       CASP6 MUTATED CASP6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP6 MUTATED        1      2      0
  CASP6 WILD-TYPE    181    131     72
D1618V6, multiclass
        clus
vv       CASP6 MUTATED CASP6 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP6 MUTATED        0      0      1      2
  CASP6 WILD-TYPE    112     96     91    184
D1618V7, multiclass
        clus
vv       CASP6 MUTATED CASP6 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASP6 MUTATED        1      0      0      0      1      0      1
  CASP6 WILD-TYPE     59     50     49     40     62    125     98
D1618V8, multiclass
        clus
vv       CASP6 MUTATED CASP6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP6 MUTATED        0      1      0      1
  CASP6 WILD-TYPE    130     77     68    195
D1618V9, multiclass
[1] "Remove cluster labels:" "CASP6 MUTATED"         
clus
  CASP6 MUTATED CASP6 WILD-TYPE 
              2             470 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-4105 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659      TCGA-A6-5660 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664      TCGA-A6-5665 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649      TCGA-A6-6651 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654      TCGA-A6-6780 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3492 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510      TCGA-AA-3511 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517      TCGA-AA-3518 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526      TCGA-AA-3527 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542      TCGA-AA-3543 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549      TCGA-AA-3552 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3556 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662      TCGA-AA-3663 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3695      TCGA-AA-3696 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3697      TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A00D      TCGA-AA-A00J      TCGA-AA-A00L 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00U      TCGA-AA-A00W 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A022 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02Y 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6888      TCGA-AD-6889      TCGA-AD-6890      TCGA-AD-6895 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6899      TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2689      TCGA-AF-2691 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-2693      TCGA-AF-3400      TCGA-AF-3913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-5654      TCGA-AF-6136      TCGA-AF-6655 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A011 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004      TCGA-AY-4070 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6718 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-5862      TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASP6 MUTATED        0      1      0      0      1      0      0      0
  CASP6 WILD-TYPE     40     61     28     80     68     48     43     28
                 vv
clus              CLUS_9
  CASP6 MUTATED        0
  CASP6 WILD-TYPE     74
D1618V10, multiclass
[1] "Remove cluster labels:" "CASP6 MUTATED"         
clus
  CASP6 MUTATED CASP6 WILD-TYPE 
              2             470 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-4105 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659      TCGA-A6-5660 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664      TCGA-A6-5665 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649      TCGA-A6-6651 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654      TCGA-A6-6780 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3492 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510      TCGA-AA-3511 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517      TCGA-AA-3518 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526      TCGA-AA-3527 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542      TCGA-AA-3543 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549      TCGA-AA-3552 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3556 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662      TCGA-AA-3663 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3695      TCGA-AA-3696 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3697      TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A00D      TCGA-AA-A00J      TCGA-AA-A00L 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00U      TCGA-AA-A00W 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A022 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02Y 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900      TCGA-AD-6548 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6888      TCGA-AD-6889      TCGA-AD-6890      TCGA-AD-6895 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6899      TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2689      TCGA-AF-2691 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-2693      TCGA-AF-3400      TCGA-AF-3913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-5654      TCGA-AF-6136      TCGA-AF-6655 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A011 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004      TCGA-AY-4070 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6718 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-5862      TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G4-6588      TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
     TCGA-G5-6235      TCGA-G5-6641 
"CASP6 WILD-TYPE" "CASP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP6 MUTATED        0      0      0      0
  CASP6 WILD-TYPE     33     31     27     19
D1618V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP6 MUTATED        0      0      0      0
  CASP6 WILD-TYPE     54     10     24     22
D1618V12, multiclass

Clustering(1619) Variable = CSGALNACT1 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        0      0      0      0
  CSGALNACT1 WILD-TYPE     46     58     64     43
D1619V1, multiclass
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT1 MUTATED        0      0      0
  CSGALNACT1 WILD-TYPE     51     83     77
D1619V2, multiclass
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        7      2      0      0
  CSGALNACT1 WILD-TYPE    171    181    101     20
D1619V3, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  7                  171
  CLUS_2                  2                  181
  CLUS_3                  0                  101
  CLUS_4                  0                   20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT1 MUTATED        5      0      4
  CSGALNACT1 WILD-TYPE     82     80     96
D1619V4, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  5                   82
  CLUS_2                  0                   80
  CLUS_3                  4                   96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT1 MUTATED        1      2      5
  CSGALNACT1 WILD-TYPE     88    158    133
D1619V5, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  1                   88
  CLUS_2                  2                  158
  CLUS_3                  5                  133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT1 MUTATED        5      1      2
  CSGALNACT1 WILD-TYPE    177    132     70
D1619V6, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  5                  177
  CLUS_2                  1                  132
  CLUS_3                  2                   70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        2      3      4      0
  CSGALNACT1 WILD-TYPE    110     93     88    186
D1619V7, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  2                  110
  CLUS_2                  3                   93
  CLUS_3                  4                   88
  CLUS_4                  0                  186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSGALNACT1 MUTATED        2      0      3      1      3      0      0
  CSGALNACT1 WILD-TYPE     58     50     46     39     60    125     99
D1619V8, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  2                   58
  CLUS_2                  0                   50
  CLUS_3                  3                   46
  CLUS_4                  1                   39
  CLUS_5                  3                   60
  CLUS_6                  0                  125
  CLUS_7                  0                   99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        3      5      0      1
  CSGALNACT1 WILD-TYPE    127     73     68    195
D1619V9, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  3                  127
  CLUS_2                  5                   73
  CLUS_3                  0                   68
  CLUS_4                  1                  195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSGALNACT1 MUTATED        2      3      0      0      1      2      1      0
  CSGALNACT1 WILD-TYPE     38     59     28     80     68     46     42     28
                      vv
clus                   CLUS_9
  CSGALNACT1 MUTATED        0
  CSGALNACT1 WILD-TYPE     74
D1619V10, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  2                   38
  CLUS_2                  3                   59
  CLUS_3                  0                   28
  CLUS_4                  0                   80
  CLUS_5                  1                   68
  CLUS_6                  2                   46
  CLUS_7                  1                   42
  CLUS_8                  0                   28
  CLUS_9                  0                   74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        1      1      1      0
  CSGALNACT1 WILD-TYPE     32     30     26     19
D1619V11, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  1                   32
  CLUS_2                  1                   30
  CLUS_3                  1                   26
  CLUS_4                  0                   19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        2      0      1      0
  CSGALNACT1 WILD-TYPE     52     10     23     22
D1619V12, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  2                   52
  CLUS_2                  0                   10
  CLUS_3                  1                   23
  CLUS_4                  0                   22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1620) Variable = SF3B2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        1      0      0      1
  SF3B2 WILD-TYPE     45     58     64     42
D1620V1, multiclass
[1] "Remove cluster labels:" "SF3B2 MUTATED"         
clus
  SF3B2 MUTATED SF3B2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AY-4071 
"SF3B2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED        1      1      0
  SF3B2 WILD-TYPE     50     82     77
D1620V2, multiclass
[1] "Remove cluster labels:" "SF3B2 MUTATED"         
clus
  SF3B2 MUTATED SF3B2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" "SF3B2 WILD-TYPE" 
     TCGA-AY-4071 
"SF3B2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        6      0      2      2
  SF3B2 WILD-TYPE    172    183     99     18
D1620V3, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED        2      1      5
  SF3B2 WILD-TYPE     85     79     95
D1620V4, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED        1      7      2
  SF3B2 WILD-TYPE     88    153    136
D1620V5, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED        3      5      2
  SF3B2 WILD-TYPE    179    128     70
D1620V6, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        1      5      2      2
  SF3B2 WILD-TYPE    111     91     90    184
D1620V7, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SF3B2 MUTATED        1      2      4      1      0      0      2
  SF3B2 WILD-TYPE     59     48     45     39     63    125     97
D1620V8, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        6      2      0      2
  SF3B2 WILD-TYPE    124     76     68    194
D1620V9, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SF3B2 MUTATED        2      1      2      1      3      1      0      0
  SF3B2 WILD-TYPE     38     61     26     79     66     47     43     28
                 vv
clus              CLUS_9
  SF3B2 MUTATED        0
  SF3B2 WILD-TYPE     74
D1620V10, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        1      0      0      2
  SF3B2 WILD-TYPE     32     31     27     17
D1620V11, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        2      0      1      0
  SF3B2 WILD-TYPE     52     10     23     22
D1620V12, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1621) Variable = ZNF232 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF232 MUTATED        0      0      0      0
  ZNF232 WILD-TYPE     46     58     64     43
D1621V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF232 MUTATED        0      0      0
  ZNF232 WILD-TYPE     51     83     77
D1621V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF232 MUTATED        3      0      1      0
  ZNF232 WILD-TYPE    175    183    100     20
D1621V3, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF232 MUTATED        1      1      2
  ZNF232 WILD-TYPE     86     79     98
D1621V4, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF232 MUTATED        1      0      3
  ZNF232 WILD-TYPE     88    160    135
D1621V5, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF232 MUTATED        3      1      0
  ZNF232 WILD-TYPE    179    132     72
D1621V6, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF232 MUTATED        1      3      0      0
  ZNF232 WILD-TYPE    111     93     92    186
D1621V7, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              0               92
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF232 MUTATED        0      1      2      0      1      0      0
  ZNF232 WILD-TYPE     60     49     47     40     62    125     99
D1621V8, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF232 MUTATED        1      1      0      2
  ZNF232 WILD-TYPE    129     77     68    194
D1621V9, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF232 MUTATED        0      1      0      0      1      0      1      0
  ZNF232 WILD-TYPE     40     61     28     80     68     48     42     28
                  vv
clus               CLUS_9
  ZNF232 MUTATED        1
  ZNF232 WILD-TYPE     73
D1621V10, multiclass
        clus
vv       ZNF232 MUTATED ZNF232 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF232 MUTATED        0      1      0      0
  ZNF232 WILD-TYPE     33     30     27     19
D1621V11, multiclass
[1] "Remove cluster labels:" "ZNF232 MUTATED"        
clus
  ZNF232 MUTATED ZNF232 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6460 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF232 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF232 MUTATED        0      1      0      0
  ZNF232 WILD-TYPE     54      9     24     22
D1621V12, multiclass
[1] "Remove cluster labels:" "ZNF232 MUTATED"        
clus
  ZNF232 MUTATED ZNF232 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6460 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" "ZNF232 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF232 WILD-TYPE" 

Clustering(1622) Variable = TRIM55 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM55 MUTATED        1      2      1      4
  TRIM55 WILD-TYPE     45     56     63     39
D1622V1, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2               56
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM55 MUTATED        3      1      4
  TRIM55 WILD-TYPE     48     82     73
D1622V2, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM55 MUTATED       16      1      2      0
  TRIM55 WILD-TYPE    162    182     99     20
D1622V3, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1             16              162
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM55 MUTATED        5      2      5
  TRIM55 WILD-TYPE     82     78     95
D1622V4, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM55 MUTATED        3      4      7
  TRIM55 WILD-TYPE     86    156    131
D1622V5, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM55 MUTATED        7      5      2
  TRIM55 WILD-TYPE    175    128     70
D1622V6, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM55 MUTATED        3      5      4      7
  TRIM55 WILD-TYPE    109     91     88    179
D1622V7, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM55 MUTATED        2      4      4      0      2      2      5
  TRIM55 WILD-TYPE     58     46     45     40     61    123     94
D1622V8, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM55 MUTATED        4      5      0      9
  TRIM55 WILD-TYPE    126     73     68    187
D1622V9, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM55 MUTATED        1      4      1      4      4      2      1      0
  TRIM55 WILD-TYPE     39     58     27     76     65     46     42     28
                  vv
clus               CLUS_9
  TRIM55 MUTATED        1
  TRIM55 WILD-TYPE     73
D1622V10, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM55 MUTATED        1      1      1      1
  TRIM55 WILD-TYPE     32     30     26     18
D1622V11, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM55 MUTATED        2      0      0      2
  TRIM55 WILD-TYPE     52     10     24     20
D1622V12, multiclass
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1623) Variable = IFITM5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM5 MUTATED        0      0      0      0
  IFITM5 WILD-TYPE     46     58     64     43
D1623V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM5 MUTATED        0      0      0
  IFITM5 WILD-TYPE     51     83     77
D1623V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM5 MUTATED        2      1      1      0
  IFITM5 WILD-TYPE    176    182    100     20
D1623V3, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM5 MUTATED        0      1      3
  IFITM5 WILD-TYPE     87     79     97
D1623V4, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM5 MUTATED        1      0      3
  IFITM5 WILD-TYPE     88    160    135
D1623V5, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFITM5 MUTATED        3      0      1
  IFITM5 WILD-TYPE    179    133     71
D1623V6, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              0              133
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM5 MUTATED        0      2      2      0
  IFITM5 WILD-TYPE    112     94     90    186
D1623V7, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFITM5 MUTATED        0      0      2      0      2      0      0
  IFITM5 WILD-TYPE     60     50     47     40     61    125     99
D1623V8, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM5 MUTATED        0      2      0      2
  IFITM5 WILD-TYPE    130     76     68    194
D1623V9, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFITM5 MUTATED        0      2      0      0      2      0      0      0
  IFITM5 WILD-TYPE     40     60     28     80     67     48     43     28
                  vv
clus               CLUS_9
  IFITM5 MUTATED        0
  IFITM5 WILD-TYPE     74
D1623V10, multiclass
        clus
vv       IFITM5 MUTATED IFITM5 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM5 MUTATED        0      1      0      1
  IFITM5 WILD-TYPE     33     30     27     18
D1623V11, multiclass
[1] "Remove cluster labels:" "IFITM5 MUTATED"        
clus
  IFITM5 MUTATED IFITM5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFITM5 MUTATED        0      1      1      0
  IFITM5 WILD-TYPE     54      9     23     22
D1623V12, multiclass
[1] "Remove cluster labels:" "IFITM5 MUTATED"        
clus
  IFITM5 MUTATED IFITM5 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" "IFITM5 WILD-TYPE" 

Clustering(1624) Variable = C9ORF125 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF125 MUTATED        4      0      0      0
  C9ORF125 WILD-TYPE     42     58     64     43
D1624V1, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                0                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF125 MUTATED        4      0      0
  C9ORF125 WILD-TYPE     47     83     77
D1624V2, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                0                 83
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF125 MUTATED       12      0      0      0
  C9ORF125 WILD-TYPE    166    183    101     20
D1624V3, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1               12                166
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF125 MUTATED        2      0      6
  C9ORF125 WILD-TYPE     85     80     94
D1624V4, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF125 MUTATED        1      3      6
  C9ORF125 WILD-TYPE     88    157    132
D1624V5, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF125 MUTATED        4      4      2
  C9ORF125 WILD-TYPE    178    129     70
D1624V6, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF125 MUTATED        0      6      2      4
  C9ORF125 WILD-TYPE    112     90     90    182
D1624V7, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                6                 90
  CLUS_3                2                 90
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C9ORF125 MUTATED        0      1      7      0      0      0      4
  C9ORF125 WILD-TYPE     60     49     42     40     63    125     95
D1624V8, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                7                 42
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF125 MUTATED        3      2      0      5
  C9ORF125 WILD-TYPE    127     76     68    191
D1624V9, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C9ORF125 MUTATED        1      2      0      0      6      0      0      0
  C9ORF125 WILD-TYPE     39     60     28     80     63     48     43     28
                    vv
clus                 CLUS_9
  C9ORF125 MUTATED        1
  C9ORF125 WILD-TYPE     73
D1624V10, multiclass
        clus
vv       C9ORF125 MUTATED C9ORF125 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF125 MUTATED        0      0      0      1
  C9ORF125 WILD-TYPE     33     31     27     18
D1624V11, multiclass
[1] "Remove cluster labels:" "C9ORF125 MUTATED"      
clus
  C9ORF125 MUTATED C9ORF125 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-G5-6641 
"C9ORF125 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF125 MUTATED        0      0      1      0
  C9ORF125 WILD-TYPE     54     10     23     22
D1624V12, multiclass
[1] "Remove cluster labels:" "C9ORF125 MUTATED"      
clus
  C9ORF125 MUTATED C9ORF125 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6600         TCGA-AZ-6601 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" "C9ORF125 WILD-TYPE" 
        TCGA-G5-6641 
"C9ORF125 WILD-TYPE" 

Clustering(1625) Variable = IPPK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPPK MUTATED        0      1      0      1
  IPPK WILD-TYPE     46     57     64     42
D1625V1, multiclass
[1] "Remove cluster labels:" "IPPK MUTATED"          
clus
  IPPK MUTATED IPPK WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866     TCGA-AA-3867 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AY-4071 
"IPPK WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPPK MUTATED        1      1      0
  IPPK WILD-TYPE     50     82     77
D1625V2, multiclass
[1] "Remove cluster labels:" "IPPK MUTATED"          
clus
  IPPK MUTATED IPPK WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866     TCGA-AA-3867 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" "IPPK WILD-TYPE" 
    TCGA-AY-4071 
"IPPK WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPPK MUTATED        6      2      1      0
  IPPK WILD-TYPE    172    181    100     20
D1625V3, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPPK MUTATED        5      1      1
  IPPK WILD-TYPE     82     79     99
D1625V4, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPPK MUTATED        1      0      7
  IPPK WILD-TYPE     88    160    131
D1625V5, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            1             88
  CLUS_2            0            160
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPPK MUTATED        6      1      1
  IPPK WILD-TYPE    176    132     71
D1625V6, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPPK MUTATED        1      2      4      2
  IPPK WILD-TYPE    111     94     88    184
D1625V7, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IPPK MUTATED        1      2      2      0      2      1      1
  IPPK WILD-TYPE     59     48     47     40     61    124     98
D1625V8, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPPK MUTATED        3      3      0      3
  IPPK WILD-TYPE    127     75     68    193
D1625V9, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IPPK MUTATED        1      3      1      2      1      1      0      0      0
  IPPK WILD-TYPE     39     59     27     78     68     47     43     28     74
D1625V10, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPPK MUTATED        1      0      0      2
  IPPK WILD-TYPE     32     31     27     17
D1625V11, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPPK MUTATED        2      0      0      1
  IPPK WILD-TYPE     52     10     24     21
D1625V12, multiclass
        clus
vv       IPPK MUTATED IPPK WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1626) Variable = ARHGEF7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        4      1      0      0
  ARHGEF7 WILD-TYPE     42     57     64     43
D1626V1, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF7 MUTATED        4      1      0
  ARHGEF7 WILD-TYPE     47     82     77
D1626V2, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED       12      4      4      1
  ARHGEF7 WILD-TYPE    166    179     97     19
D1626V3, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               4               179
  CLUS_3               4                97
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF7 MUTATED        6      1      8
  ARHGEF7 WILD-TYPE     81     79     92
D1626V4, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               1                79
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF7 MUTATED        2     10      4
  ARHGEF7 WILD-TYPE     87    150    134
D1626V5, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2                87
  CLUS_2              10               150
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF7 MUTATED        6      6      4
  ARHGEF7 WILD-TYPE    176    127     68
D1626V6, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               6               127
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        2      6      6      7
  ARHGEF7 WILD-TYPE    110     90     86    179
D1626V7, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               6                90
  CLUS_3               6                86
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF7 MUTATED        2      3      7      0      2      1      6
  ARHGEF7 WILD-TYPE     58     47     42     40     61    124     93
D1626V8, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               7                42
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        8      2      3      6
  ARHGEF7 WILD-TYPE    122     76     65    190
D1626V9, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               2                76
  CLUS_3               3                65
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGEF7 MUTATED        3      3      2      3      6      0      1      0
  ARHGEF7 WILD-TYPE     37     59     26     77     63     48     42     28
                   vv
clus                CLUS_9
  ARHGEF7 MUTATED        1
  ARHGEF7 WILD-TYPE     73
D1626V10, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        1      0      1      2
  ARHGEF7 WILD-TYPE     32     31     26     17
D1626V11, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF7 MUTATED        1      0      3      0
  ARHGEF7 WILD-TYPE     53     10     21     22
D1626V12, multiclass
        clus
vv       ARHGEF7 MUTATED ARHGEF7 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1627) Variable = WDR65 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR65 MUTATED        1      0      0      1
  WDR65 WILD-TYPE     45     58     64     42
D1627V1, multiclass
[1] "Remove cluster labels:" "WDR65 MUTATED"         
clus
  WDR65 MUTATED WDR65 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AY-4071 
"WDR65 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR65 MUTATED        2      0      0
  WDR65 WILD-TYPE     49     83     77
D1627V2, multiclass
[1] "Remove cluster labels:" "WDR65 MUTATED"         
clus
  WDR65 MUTATED WDR65 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" "WDR65 WILD-TYPE" 
     TCGA-AY-4071 
"WDR65 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR65 MUTATED        6      0      0      0
  WDR65 WILD-TYPE    172    183    101     20
D1627V3, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR65 MUTATED        1      0      3
  WDR65 WILD-TYPE     86     80     97
D1627V4, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR65 MUTATED        1      1      4
  WDR65 WILD-TYPE     88    159    134
D1627V5, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR65 MUTATED        4      2      0
  WDR65 WILD-TYPE    178    131     72
D1627V6, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR65 MUTATED        0      2      2      2
  WDR65 WILD-TYPE    112     94     90    184
D1627V7, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR65 MUTATED        0      1      3      0      0      0      2
  WDR65 WILD-TYPE     60     49     46     40     63    125     97
D1627V8, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR65 MUTATED        2      1      0      3
  WDR65 WILD-TYPE    128     77     68    193
D1627V9, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR65 MUTATED        0      1      0      1      3      0      1      0
  WDR65 WILD-TYPE     40     61     28     79     66     48     42     28
                 vv
clus              CLUS_9
  WDR65 MUTATED        0
  WDR65 WILD-TYPE     74
D1627V10, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR65 MUTATED        0      0      0      3
  WDR65 WILD-TYPE     33     31     27     16
D1627V11, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR65 MUTATED        2      0      1      0
  WDR65 WILD-TYPE     52     10     23     22
D1627V12, multiclass
        clus
vv       WDR65 MUTATED WDR65 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1628) Variable = APLP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APLP1 MUTATED        3      3      1      3
  APLP1 WILD-TYPE     43     55     63     40
D1628V1, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             3              55
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APLP1 MUTATED        6      3      1
  APLP1 WILD-TYPE     45     80     76
D1628V2, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APLP1 MUTATED       12      2      3      0
  APLP1 WILD-TYPE    166    181     98     20
D1628V3, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APLP1 MUTATED        2      2      4
  APLP1 WILD-TYPE     85     78     96
D1628V4, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APLP1 MUTATED        4      5      3
  APLP1 WILD-TYPE     85    155    135
D1628V5, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APLP1 MUTATED        5      4      3
  APLP1 WILD-TYPE    177    129     69
D1628V6, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APLP1 MUTATED        3      6      0      8
  APLP1 WILD-TYPE    109     90     92    178
D1628V7, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             6              90
  CLUS_3             0              92
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APLP1 MUTATED        1      2      3      0      1      4      6
  APLP1 WILD-TYPE     59     48     46     40     62    121     93
D1628V8, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             4             121
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APLP1 MUTATED        4      1      0     11
  APLP1 WILD-TYPE    126     77     68    185
D1628V9, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  APLP1 MUTATED        0      2      1      3      6      1      0      1
  APLP1 WILD-TYPE     40     60     27     77     63     47     43     27
                 vv
clus              CLUS_9
  APLP1 MUTATED        2
  APLP1 WILD-TYPE     72
D1628V10, multiclass
        clus
vv       APLP1 MUTATED APLP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APLP1 MUTATED        0      1      1      0
  APLP1 WILD-TYPE     33     30     26     19
D1628V11, multiclass
[1] "Remove cluster labels:" "APLP1 MUTATED"         
clus
  APLP1 MUTATED APLP1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AF-2687 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6460      TCGA-F4-6569 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APLP1 MUTATED        0      1      1      0
  APLP1 WILD-TYPE     54      9     23     22
D1628V12, multiclass
[1] "Remove cluster labels:" "APLP1 MUTATED"         
clus
  APLP1 MUTATED APLP1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AF-2687 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6460      TCGA-F4-6569 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" "APLP1 WILD-TYPE" 

Clustering(1629) Variable = KIAA0319 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319 MUTATED        2      1      0      4
  KIAA0319 WILD-TYPE     44     57     64     39
D1629V1, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0319 MUTATED        3      2      2
  KIAA0319 WILD-TYPE     48     81     75
D1629V2, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319 MUTATED       12      4      0      1
  KIAA0319 WILD-TYPE    166    179    101     19
D1629V3, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1               12                166
  CLUS_2                4                179
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0319 MUTATED        3      1      6
  KIAA0319 WILD-TYPE     84     79     94
D1629V4, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                1                 79
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0319 MUTATED        2      6      6
  KIAA0319 WILD-TYPE     87    154    132
D1629V5, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                6                154
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0319 MUTATED        6      7      1
  KIAA0319 WILD-TYPE    176    126     71
D1629V6, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                7                126
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319 MUTATED        1      8      1      7
  KIAA0319 WILD-TYPE    111     88     91    179
D1629V7, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                8                 88
  CLUS_3                1                 91
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0319 MUTATED        2      4      4      0      1      3      3
  KIAA0319 WILD-TYPE     58     46     45     40     62    122     96
D1629V8, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                4                 46
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                3                122
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319 MUTATED        7      1      2      7
  KIAA0319 WILD-TYPE    123     77     66    189
D1629V9, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                7                123
  CLUS_2                1                 77
  CLUS_3                2                 66
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0319 MUTATED        2      1      2      2      6      0      0      0
  KIAA0319 WILD-TYPE     38     61     26     78     63     48     43     28
                    vv
clus                 CLUS_9
  KIAA0319 MUTATED        4
  KIAA0319 WILD-TYPE     70
D1629V10, multiclass
        clus
vv       KIAA0319 MUTATED KIAA0319 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                1                 61
  CLUS_3                2                 26
  CLUS_4                2                 78
  CLUS_5                6                 63
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                4                 70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319 MUTATED        1      0      0      1
  KIAA0319 WILD-TYPE     32     31     27     18
D1629V11, multiclass
[1] "Remove cluster labels:" "KIAA0319 MUTATED"      
clus
  KIAA0319 MUTATED KIAA0319 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6158         TCGA-DC-6681 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0319 MUTATED        1      0      1      0
  KIAA0319 WILD-TYPE     53     10     23     22
D1629V12, multiclass
[1] "Remove cluster labels:" "KIAA0319 MUTATED"      
clus
  KIAA0319 MUTATED KIAA0319 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6158         TCGA-DC-6681 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" "KIAA0319 WILD-TYPE" 

Clustering(1630) Variable = MECOM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MECOM MUTATED        2      1      0      5
  MECOM WILD-TYPE     44     57     64     38
D1630V1, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MECOM MUTATED        5      2      1
  MECOM WILD-TYPE     46     81     76
D1630V2, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             5              46
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MECOM MUTATED       16      3      1      1
  MECOM WILD-TYPE    162    180    100     19
D1630V3, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1            16             162
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MECOM MUTATED        5      2      6
  MECOM WILD-TYPE     82     78     94
D1630V4, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MECOM MUTATED        3      5     10
  MECOM WILD-TYPE     86    155    128
D1630V5, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MECOM MUTATED       11      5      2
  MECOM WILD-TYPE    171    128     70
D1630V6, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1            11             171
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MECOM MUTATED        2      3      7      9
  MECOM WILD-TYPE    110     93     85    177
D1630V7, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             7              85
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MECOM MUTATED        3      1      9      0      0      1      7
  MECOM WILD-TYPE     57     49     40     40     63    124     92
D1630V8, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MECOM MUTATED        6      2      3      9
  MECOM WILD-TYPE    124     76     65    187
D1630V9, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             3              65
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MECOM MUTATED        1      4      1      1      9      0      2      0
  MECOM WILD-TYPE     39     58     27     79     60     48     41     28
                 vv
clus              CLUS_9
  MECOM MUTATED        2
  MECOM WILD-TYPE     72
D1630V10, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             9              60
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MECOM MUTATED        1      0      0      4
  MECOM WILD-TYPE     32     31     27     15
D1630V11, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MECOM MUTATED        3      0      2      0
  MECOM WILD-TYPE     51     10     22     22
D1630V12, multiclass
        clus
vv       MECOM MUTATED MECOM WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1631) Variable = MYO3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3A MUTATED        8      0      0      4
  MYO3A WILD-TYPE     38     58     64     39
D1631V1, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             8              38
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3A MUTATED        8      3      1
  MYO3A WILD-TYPE     43     80     76
D1631V2, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             8              43
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3A MUTATED       24     11      6      2
  MYO3A WILD-TYPE    154    172     95     18
D1631V3, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1            24             154
  CLUS_2            11             172
  CLUS_3             6              95
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3A MUTATED       12      8     13
  MYO3A WILD-TYPE     75     72     87
D1631V4, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1            12              75
  CLUS_2             8              72
  CLUS_3            13              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3A MUTATED        2     20     15
  MYO3A WILD-TYPE     87    140    123
D1631V5, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             2              87
  CLUS_2            20             140
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO3A MUTATED       15     13      9
  MYO3A WILD-TYPE    167    120     63
D1631V6, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1            15             167
  CLUS_2            13             120
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3A MUTATED       10     11     10     12
  MYO3A WILD-TYPE    102     85     82    174
D1631V7, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1            10             102
  CLUS_2            11              85
  CLUS_3            10              82
  CLUS_4            12             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYO3A MUTATED        9      6      9      1      6      2     10
  MYO3A WILD-TYPE     51     44     40     39     57    123     89
D1631V8, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             9              51
  CLUS_2             6              44
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             6              57
  CLUS_6             2             123
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3A MUTATED       15     10      2     14
  MYO3A WILD-TYPE    115     68     66    182
D1631V9, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1            15             115
  CLUS_2            10              68
  CLUS_3             2              66
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYO3A MUTATED        4      8      2      5     10      4      3      1
  MYO3A WILD-TYPE     36     54     26     75     59     44     40     27
                 vv
clus              CLUS_9
  MYO3A MUTATED        4
  MYO3A WILD-TYPE     70
D1631V10, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             4              36
  CLUS_2             8              54
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5            10              59
  CLUS_6             4              44
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3A MUTATED        3      0      1      4
  MYO3A WILD-TYPE     30     31     26     15
D1631V11, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO3A MUTATED        4      0      3      1
  MYO3A WILD-TYPE     50     10     21     21
D1631V12, multiclass
        clus
vv       MYO3A MUTATED MYO3A WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1632) Variable = PIK3C2G MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        3      0      1      3
  PIK3C2G WILD-TYPE     43     58     63     40
D1632V1, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED        2      3      2
  PIK3C2G WILD-TYPE     49     80     75
D1632V2, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                49
  CLUS_2               3                80
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED       17      2      3      1
  PIK3C2G WILD-TYPE    161    181     98     19
D1632V3, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1              17               161
  CLUS_2               2               181
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED        8      3      5
  PIK3C2G WILD-TYPE     79     77     95
D1632V4, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               8                79
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED        1      6     10
  PIK3C2G WILD-TYPE     88    154    128
D1632V5, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED       11      4      2
  PIK3C2G WILD-TYPE    171    129     70
D1632V6, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1              11               171
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        3      7      6      7
  PIK3C2G WILD-TYPE    109     89     86    179
D1632V7, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               3               109
  CLUS_2               7                89
  CLUS_3               6                86
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3C2G MUTATED        4      3      6      0      4      3      3
  PIK3C2G WILD-TYPE     56     47     43     40     59    122     96
D1632V8, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               4                56
  CLUS_2               3                47
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               4                59
  CLUS_6               3               122
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        8      5      3      7
  PIK3C2G WILD-TYPE    122     73     65    189
D1632V9, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               8               122
  CLUS_2               5                73
  CLUS_3               3                65
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIK3C2G MUTATED        1      5      2      3      5      2      4      0
  PIK3C2G WILD-TYPE     39     57     26     77     64     46     39     28
                   vv
clus                CLUS_9
  PIK3C2G MUTATED        1
  PIK3C2G WILD-TYPE     73
D1632V10, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                39
  CLUS_2               5                57
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               5                64
  CLUS_6               2                46
  CLUS_7               4                39
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        1      2      1      1
  PIK3C2G WILD-TYPE     32     29     26     18
D1632V11, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        2      0      2      1
  PIK3C2G WILD-TYPE     52     10     22     21
D1632V12, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1633) Variable = WFDC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC5 MUTATED        1      0      0      0
  WFDC5 WILD-TYPE     45     58     64     43
D1633V1, multiclass
[1] "Remove cluster labels:" "WFDC5 MUTATED"         
clus
  WFDC5 MUTATED WFDC5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WFDC5 MUTATED        1      0      0
  WFDC5 WILD-TYPE     50     83     77
D1633V2, multiclass
[1] "Remove cluster labels:" "WFDC5 MUTATED"         
clus
  WFDC5 MUTATED WFDC5 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC5 MUTATED        2      2      0      1
  WFDC5 WILD-TYPE    176    181    101     19
D1633V3, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WFDC5 MUTATED        2      1      1
  WFDC5 WILD-TYPE     85     79     99
D1633V4, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WFDC5 MUTATED        2      0      3
  WFDC5 WILD-TYPE     87    160    135
D1633V5, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0             160
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WFDC5 MUTATED        4      0      1
  WFDC5 WILD-TYPE    178    133     71
D1633V6, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC5 MUTATED        2      1      1      1
  WFDC5 WILD-TYPE    110     95     91    185
D1633V7, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WFDC5 MUTATED        1      0      1      1      1      0      1
  WFDC5 WILD-TYPE     59     50     48     39     62    125     98
D1633V8, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC5 MUTATED        3      1      0      1
  WFDC5 WILD-TYPE    127     77     68    195
D1633V9, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WFDC5 MUTATED        0      2      0      1      1      0      1      0
  WFDC5 WILD-TYPE     40     60     28     79     68     48     42     28
                 vv
clus              CLUS_9
  WFDC5 MUTATED        0
  WFDC5 WILD-TYPE     74
D1633V10, multiclass
        clus
vv       WFDC5 MUTATED WFDC5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC5 MUTATED        0      1      0      1
  WFDC5 WILD-TYPE     33     30     27     18
D1633V11, multiclass
[1] "Remove cluster labels:" "WFDC5 MUTATED"         
clus
  WFDC5 MUTATED WFDC5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601      TCGA-AZ-6603 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFDC5 MUTATED        2      0      0      0
  WFDC5 WILD-TYPE     52     10     24     22
D1633V12, multiclass
[1] "Remove cluster labels:" "WFDC5 MUTATED"         
clus
  WFDC5 MUTATED WFDC5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601      TCGA-AZ-6603 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" "WFDC5 WILD-TYPE" 

Clustering(1634) Variable = ABCD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD4 MUTATED        3      0      0      1
  ABCD4 WILD-TYPE     43     58     64     42
D1634V1, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD4 MUTATED        4      0      0
  ABCD4 WILD-TYPE     47     83     77
D1634V2, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD4 MUTATED       10      0      0      0
  ABCD4 WILD-TYPE    168    183    101     20
D1634V3, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD4 MUTATED        1      0      5
  ABCD4 WILD-TYPE     86     80     95
D1634V4, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD4 MUTATED        2      1      4
  ABCD4 WILD-TYPE     87    159    134
D1634V5, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD4 MUTATED        4      2      1
  ABCD4 WILD-TYPE    178    131     71
D1634V6, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD4 MUTATED        0      3      3      4
  ABCD4 WILD-TYPE    112     93     89    182
D1634V7, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCD4 MUTATED        0      0      5      1      0      0      4
  ABCD4 WILD-TYPE     60     50     44     39     63    125     95
D1634V8, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD4 MUTATED        4      1      0      4
  ABCD4 WILD-TYPE    126     77     68    192
D1634V9, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABCD4 MUTATED        1      1      0      0      4      0      1      2
  ABCD4 WILD-TYPE     39     61     28     80     65     48     42     26
                 vv
clus              CLUS_9
  ABCD4 MUTATED        0
  ABCD4 WILD-TYPE     74
D1634V10, multiclass
        clus
vv       ABCD4 MUTATED ABCD4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD4 MUTATED        0      0      0      2
  ABCD4 WILD-TYPE     33     31     27     17
D1634V11, multiclass
[1] "Remove cluster labels:" "ABCD4 MUTATED"         
clus
  ABCD4 MUTATED ABCD4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD4 MUTATED        2      0      0      0
  ABCD4 WILD-TYPE     52     10     24     22
D1634V12, multiclass
[1] "Remove cluster labels:" "ABCD4 MUTATED"         
clus
  ABCD4 MUTATED ABCD4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" "ABCD4 WILD-TYPE" 

Clustering(1635) Variable = PCSK5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED        2      0      0      3
  PCSK5 WILD-TYPE     44     58     64     40
D1635V1, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        3      2      0
  PCSK5 WILD-TYPE     48     81     77
D1635V2, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED       10      5      0      0
  PCSK5 WILD-TYPE    168    178    101     20
D1635V3, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        4      2      3
  PCSK5 WILD-TYPE     83     78     97
D1635V4, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        0      5      9
  PCSK5 WILD-TYPE     89    155    129
D1635V5, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCSK5 MUTATED        8      5      1
  PCSK5 WILD-TYPE    174    128     71
D1635V6, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED        3      5      2      5
  PCSK5 WILD-TYPE    109     91     90    181
D1635V7, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCSK5 MUTATED        2      1      3      1      1      1      6
  PCSK5 WILD-TYPE     58     49     46     39     62    124     93
D1635V8, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED        3      2      1      8
  PCSK5 WILD-TYPE    127     76     67    188
D1635V9, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCSK5 MUTATED        2      1      2      1      5      1      1      1
  PCSK5 WILD-TYPE     38     61     26     79     64     47     42     27
                 vv
clus              CLUS_9
  PCSK5 MUTATED        0
  PCSK5 WILD-TYPE     74
D1635V10, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED        1      1      0      1
  PCSK5 WILD-TYPE     32     30     27     18
D1635V11, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCSK5 MUTATED        1      0      1      1
  PCSK5 WILD-TYPE     53     10     23     21
D1635V12, multiclass
        clus
vv       PCSK5 MUTATED PCSK5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1636) Variable = DLGAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        2      0      0      3
  DLGAP3 WILD-TYPE     44     58     64     40
D1636V1, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED        2      2      1
  DLGAP3 WILD-TYPE     49     81     76
D1636V2, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED       15      0      1      0
  DLGAP3 WILD-TYPE    163    183    100     20
D1636V3, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED        5      0      7
  DLGAP3 WILD-TYPE     82     80     93
D1636V4, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED        0      7      6
  DLGAP3 WILD-TYPE     89    153    132
D1636V5, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED        7      6      0
  DLGAP3 WILD-TYPE    175    127     72
D1636V6, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        0      7      4      6
  DLGAP3 WILD-TYPE    112     89     88    180
D1636V7, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              7               89
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLGAP3 MUTATED        1      1      9      0      1      1      4
  DLGAP3 WILD-TYPE     59     49     40     40     62    124     95
D1636V8, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              9               40
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        8      3      0      5
  DLGAP3 WILD-TYPE    122     75     68    191
D1636V9, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DLGAP3 MUTATED        2      4      1      1      7      0      0      0
  DLGAP3 WILD-TYPE     38     58     27     79     62     48     43     28
                  vv
clus               CLUS_9
  DLGAP3 MUTATED        1
  DLGAP3 WILD-TYPE     73
D1636V10, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        0      0      0      3
  DLGAP3 WILD-TYPE     33     31     27     16
D1636V11, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        1      0      2      0
  DLGAP3 WILD-TYPE     53     10     22     22
D1636V12, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1637) Variable = MFSD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD4 MUTATED        1      0      0      1
  MFSD4 WILD-TYPE     45     58     64     42
D1637V1, multiclass
[1] "Remove cluster labels:" "MFSD4 MUTATED"         
clus
  MFSD4 MUTATED MFSD4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3521 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00W      TCGA-AA-A00Z 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AY-4071 
"MFSD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD4 MUTATED        0      0      2
  MFSD4 WILD-TYPE     51     83     75
D1637V2, multiclass
[1] "Remove cluster labels:" "MFSD4 MUTATED"         
clus
  MFSD4 MUTATED MFSD4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3521 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00W      TCGA-AA-A00Z 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AY-4071 
"MFSD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD4 MUTATED        5      0      1      0
  MFSD4 WILD-TYPE    173    183    100     20
D1637V3, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD4 MUTATED        2      0      2
  MFSD4 WILD-TYPE     85     80     98
D1637V4, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD4 MUTATED        1      3      2
  MFSD4 WILD-TYPE     88    157    136
D1637V5, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MFSD4 MUTATED        2      3      1
  MFSD4 WILD-TYPE    180    130     71
D1637V6, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD4 MUTATED        1      2      1      2
  MFSD4 WILD-TYPE    111     94     91    184
D1637V7, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFSD4 MUTATED        1      1      1      0      1      0      2
  MFSD4 WILD-TYPE     59     49     48     40     62    125     97
D1637V8, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD4 MUTATED        1      2      0      3
  MFSD4 WILD-TYPE    129     76     68    193
D1637V9, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MFSD4 MUTATED        0      1      0      0      1      3      0      0
  MFSD4 WILD-TYPE     40     61     28     80     68     45     43     28
                 vv
clus              CLUS_9
  MFSD4 MUTATED        1
  MFSD4 WILD-TYPE     73
D1637V10, multiclass
        clus
vv       MFSD4 MUTATED MFSD4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             3              45
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD4 MUTATED        0      0      0      1
  MFSD4 WILD-TYPE     33     31     27     18
D1637V11, multiclass
[1] "Remove cluster labels:" "MFSD4 MUTATED"         
clus
  MFSD4 MUTATED MFSD4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-G5-6641 
"MFSD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFSD4 MUTATED        0      0      1      0
  MFSD4 WILD-TYPE     54     10     23     22
D1637V12, multiclass
[1] "Remove cluster labels:" "MFSD4 MUTATED"         
clus
  MFSD4 MUTATED MFSD4 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" "MFSD4 WILD-TYPE" 
     TCGA-G5-6641 
"MFSD4 WILD-TYPE" 

Clustering(1638) Variable = HECTD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECTD2 MUTATED        3      0      0      4
  HECTD2 WILD-TYPE     43     58     64     39
D1638V1, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HECTD2 MUTATED        3      2      2
  HECTD2 WILD-TYPE     48     81     75
D1638V2, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECTD2 MUTATED       12      0      0      0
  HECTD2 WILD-TYPE    166    183    101     20
D1638V3, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HECTD2 MUTATED        3      0      2
  HECTD2 WILD-TYPE     84     80     98
D1638V4, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HECTD2 MUTATED        1      4      5
  HECTD2 WILD-TYPE     88    156    133
D1638V5, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HECTD2 MUTATED        5      5      0
  HECTD2 WILD-TYPE    177    128     72
D1638V6, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECTD2 MUTATED        0      2      3      7
  HECTD2 WILD-TYPE    112     94     89    179
D1638V7, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HECTD2 MUTATED        1      1      2      1      1      1      5
  HECTD2 WILD-TYPE     59     49     47     39     62    124     94
D1638V8, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECTD2 MUTATED        2      2      0      6
  HECTD2 WILD-TYPE    128     76     68    190
D1638V9, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HECTD2 MUTATED        1      3      3      1      2      0      0      0
  HECTD2 WILD-TYPE     39     59     25     79     67     48     43     28
                  vv
clus               CLUS_9
  HECTD2 MUTATED        0
  HECTD2 WILD-TYPE     74
D1638V10, multiclass
        clus
vv       HECTD2 MUTATED HECTD2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECTD2 MUTATED        0      0      0      1
  HECTD2 WILD-TYPE     33     31     27     18
D1638V11, multiclass
[1] "Remove cluster labels:" "HECTD2 MUTATED"        
clus
  HECTD2 MUTATED HECTD2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-G5-6641 
"HECTD2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECTD2 MUTATED        1      0      0      0
  HECTD2 WILD-TYPE     53     10     24     22
D1638V12, multiclass
[1] "Remove cluster labels:" "HECTD2 MUTATED"        
clus
  HECTD2 MUTATED HECTD2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" "HECTD2 WILD-TYPE" 
      TCGA-G5-6641 
"HECTD2 WILD-TYPE" 

Clustering(1639) Variable = CDH18 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH18 MUTATED        6      3      0      3
  CDH18 WILD-TYPE     40     55     64     40
D1639V1, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             3              55
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH18 MUTATED        6      5      1
  CDH18 WILD-TYPE     45     78     76
D1639V2, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             5              78
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH18 MUTATED       22      7      7      1
  CDH18 WILD-TYPE    156    176     94     19
D1639V3, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             7             176
  CLUS_3             7              94
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH18 MUTATED        6      5     14
  CDH18 WILD-TYPE     81     75     86
D1639V4, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             5              75
  CLUS_3            14              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH18 MUTATED        5     13     11
  CDH18 WILD-TYPE     84    147    127
D1639V5, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            13             147
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH18 MUTATED       14      8      7
  CDH18 WILD-TYPE    168    125     65
D1639V6, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             8             125
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH18 MUTATED        9     10      7     11
  CDH18 WILD-TYPE    103     86     85    175
D1639V7, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             9             103
  CLUS_2            10              86
  CLUS_3             7              85
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH18 MUTATED        5      4      9      3      3      6      7
  CDH18 WILD-TYPE     55     46     40     37     60    119     92
D1639V8, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             9              40
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             6             119
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH18 MUTATED       13      6      5     11
  CDH18 WILD-TYPE    117     72     63    185
D1639V9, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1            13             117
  CLUS_2             6              72
  CLUS_3             5              63
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDH18 MUTATED        1      5      4      4      9      3      6      0
  CDH18 WILD-TYPE     39     57     24     76     60     45     37     28
                 vv
clus              CLUS_9
  CDH18 MUTATED        3
  CDH18 WILD-TYPE     71
D1639V10, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             4              24
  CLUS_4             4              76
  CLUS_5             9              60
  CLUS_6             3              45
  CLUS_7             6              37
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH18 MUTATED        4      1      1      3
  CDH18 WILD-TYPE     29     30     26     16
D1639V11, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH18 MUTATED        5      0      2      2
  CDH18 WILD-TYPE     49     10     22     20
D1639V12, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1640) Variable = SIX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX5 MUTATED        2      0      0      0
  SIX5 WILD-TYPE     44     58     64     43
D1640V1, multiclass
[1] "Remove cluster labels:" "SIX5 MUTATED"          
clus
  SIX5 MUTATED SIX5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3968 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AY-4071 
"SIX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIX5 MUTATED        2      0      0
  SIX5 WILD-TYPE     49     83     77
D1640V2, multiclass
[1] "Remove cluster labels:" "SIX5 MUTATED"          
clus
  SIX5 MUTATED SIX5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3949     TCGA-AA-3950 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3968 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AY-4071 
"SIX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX5 MUTATED        4      0      1      0
  SIX5 WILD-TYPE    174    183    100     20
D1640V3, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIX5 MUTATED        0      0      3
  SIX5 WILD-TYPE     87     80     97
D1640V4, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIX5 MUTATED        1      0      3
  SIX5 WILD-TYPE     88    160    135
D1640V5, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            0            160
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIX5 MUTATED        3      0      1
  SIX5 WILD-TYPE    179    133     71
D1640V6, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX5 MUTATED        0      1      2      2
  SIX5 WILD-TYPE    112     95     90    184
D1640V7, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIX5 MUTATED        0      0      3      0      0      0      2
  SIX5 WILD-TYPE     60     50     46     40     63    125     97
D1640V8, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX5 MUTATED        3      0      0      2
  SIX5 WILD-TYPE    127     78     68    194
D1640V9, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SIX5 MUTATED        0      1      0      0      3      0      1      0      0
  SIX5 WILD-TYPE     40     61     28     80     66     48     42     28     74
D1640V10, multiclass
        clus
vv       SIX5 MUTATED SIX5 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX5 MUTATED        0      0      0      2
  SIX5 WILD-TYPE     33     31     27     17
D1640V11, multiclass
[1] "Remove cluster labels:" "SIX5 MUTATED"          
clus
  SIX5 MUTATED SIX5 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX5 MUTATED        2      0      0      0
  SIX5 WILD-TYPE     52     10     24     22
D1640V12, multiclass
[1] "Remove cluster labels:" "SIX5 MUTATED"          
clus
  SIX5 MUTATED SIX5 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" "SIX5 WILD-TYPE" 

Clustering(1641) Variable = C1ORF85 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF85 MUTATED        0      0      0      1
  C1ORF85 WILD-TYPE     46     58     64     42
D1641V1, multiclass
[1] "Remove cluster labels:" "C1ORF85 MUTATED"       
clus
  C1ORF85 MUTATED C1ORF85 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF85 MUTATED        0      0      1
  C1ORF85 WILD-TYPE     51     83     76
D1641V2, multiclass
[1] "Remove cluster labels:" "C1ORF85 MUTATED"       
clus
  C1ORF85 MUTATED C1ORF85 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"C1ORF85 WILD-TYPE" "C1ORF85 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF85 MUTATED        7      1      0      0
  C1ORF85 WILD-TYPE    171    182    101     20
D1641V3, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF85 MUTATED        2      1      4
  C1ORF85 WILD-TYPE     85     79     96
D1641V4, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF85 MUTATED        0      2      6
  C1ORF85 WILD-TYPE     89    158    132
D1641V5, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF85 MUTATED        5      3      0
  C1ORF85 WILD-TYPE    177    130     72
D1641V6, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF85 MUTATED        1      2      4      1
  C1ORF85 WILD-TYPE    111     94     88    185
D1641V7, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF85 MUTATED        2      2      3      0      1      0      0
  C1ORF85 WILD-TYPE     58     48     46     40     62    125     99
D1641V8, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF85 MUTATED        3      1      1      3
  C1ORF85 WILD-TYPE    127     77     67    193
D1641V9, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1ORF85 MUTATED        1      2      0      0      2      1      1      0
  C1ORF85 WILD-TYPE     39     60     28     80     67     47     42     28
                   vv
clus                CLUS_9
  C1ORF85 MUTATED        1
  C1ORF85 WILD-TYPE     73
D1641V10, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF85 MUTATED        2      0      0      2
  C1ORF85 WILD-TYPE     31     31     27     17
D1641V11, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF85 MUTATED        3      0      0      1
  C1ORF85 WILD-TYPE     51     10     24     21
D1641V12, multiclass
        clus
vv       C1ORF85 MUTATED C1ORF85 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1642) Variable = NAE1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAE1 MUTATED        1      0      1      2
  NAE1 WILD-TYPE     45     58     63     41
D1642V1, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAE1 MUTATED        2      0      2
  NAE1 WILD-TYPE     49     83     75
D1642V2, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAE1 MUTATED        4      5      0      0
  NAE1 WILD-TYPE    174    178    101     20
D1642V3, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            5            178
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAE1 MUTATED        4      1      0
  NAE1 WILD-TYPE     83     79    100
D1642V4, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAE1 MUTATED        0      4      4
  NAE1 WILD-TYPE     89    156    134
D1642V5, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAE1 MUTATED        4      4      0
  NAE1 WILD-TYPE    178    129     72
D1642V6, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAE1 MUTATED        2      0      3      4
  NAE1 WILD-TYPE    110     96     89    182
D1642V7, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             96
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAE1 MUTATED        1      0      1      0      4      1      2
  NAE1 WILD-TYPE     59     50     48     40     59    124     97
D1642V8, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            4             59
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAE1 MUTATED        2      4      0      2
  NAE1 WILD-TYPE    128     74     68    194
D1642V9, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NAE1 MUTATED        0      4      0      1      2      0      0      1      0
  NAE1 WILD-TYPE     40     58     28     79     67     48     43     27     74
D1642V10, multiclass
        clus
vv       NAE1 MUTATED NAE1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAE1 MUTATED        0      1      0      0
  NAE1 WILD-TYPE     33     30     27     19
D1642V11, multiclass
[1] "Remove cluster labels:" "NAE1 MUTATED"          
clus
  NAE1 MUTATED NAE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-G5-6641 
"NAE1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAE1 MUTATED        0      1      0      0
  NAE1 WILD-TYPE     54      9     24     22
D1642V12, multiclass
[1] "Remove cluster labels:" "NAE1 MUTATED"          
clus
  NAE1 MUTATED NAE1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" "NAE1 WILD-TYPE" 
    TCGA-G5-6641 
"NAE1 WILD-TYPE" 

Clustering(1643) Variable = CYP3A7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP3A7 MUTATED        2      1      0      4
  CYP3A7 WILD-TYPE     44     57     64     39
D1643V1, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP3A7 MUTATED        3      2      2
  CYP3A7 WILD-TYPE     48     81     75
D1643V2, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP3A7 MUTATED        8      2      2      0
  CYP3A7 WILD-TYPE    170    181     99     20
D1643V3, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP3A7 MUTATED        2      2      2
  CYP3A7 WILD-TYPE     85     78     98
D1643V4, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP3A7 MUTATED        3      3      4
  CYP3A7 WILD-TYPE     86    157    134
D1643V5, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP3A7 MUTATED        6      2      2
  CYP3A7 WILD-TYPE    176    131     70
D1643V6, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP3A7 MUTATED        4      1      2      5
  CYP3A7 WILD-TYPE    108     95     90    181
D1643V7, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP3A7 MUTATED        2      2      0      1      1      2      4
  CYP3A7 WILD-TYPE     58     48     49     39     62    123     95
D1643V8, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP3A7 MUTATED        4      1      0      6
  CYP3A7 WILD-TYPE    126     77     68    190
D1643V9, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP3A7 MUTATED        1      2      1      3      4      0      0      0
  CYP3A7 WILD-TYPE     39     60     27     77     65     48     43     28
                  vv
clus               CLUS_9
  CYP3A7 MUTATED        0
  CYP3A7 WILD-TYPE     74
D1643V10, multiclass
        clus
vv       CYP3A7 MUTATED CYP3A7 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP3A7 MUTATED        0      0      0      0
  CYP3A7 WILD-TYPE     33     31     27     19
D1643V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP3A7 MUTATED        0      0      0      0
  CYP3A7 WILD-TYPE     54     10     24     22
D1643V12, multiclass

Clustering(1644) Variable = DEFB129 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEFB129 MUTATED        2      0      1      0
  DEFB129 WILD-TYPE     44     58     63     43
D1644V1, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DEFB129 MUTATED        2      1      0
  DEFB129 WILD-TYPE     49     82     77
D1644V2, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEFB129 MUTATED        4      1      0      0
  DEFB129 WILD-TYPE    174    182    101     20
D1644V3, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DEFB129 MUTATED        1      0      1
  DEFB129 WILD-TYPE     86     80     99
D1644V4, multiclass
[1] "Remove cluster labels:" "DEFB129 MUTATED"       
clus
  DEFB129 MUTATED DEFB129 WILD-TYPE 
                2               265 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AF-2693        TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-4681        TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CK-4948        TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CK-5913        TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CK-6746        TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CL-5917        TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6537        TCGA-D5-6538 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G5-6235 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G5-6641 
"DEFB129 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DEFB129 MUTATED        1      0      3
  DEFB129 WILD-TYPE     88    160    135
D1644V5, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               0               160
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DEFB129 MUTATED        2      0      2
  DEFB129 WILD-TYPE    180    133     70
D1644V6, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               0               133
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEFB129 MUTATED        0      0      2      3
  DEFB129 WILD-TYPE    112     96     90    183
D1644V7, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               0                96
  CLUS_3               2                90
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEFB129 MUTATED        1      0      1      0      0      1      2
  DEFB129 WILD-TYPE     59     50     48     40     63    124     97
D1644V8, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEFB129 MUTATED        2      0      1      2
  DEFB129 WILD-TYPE    128     78     67    194
D1644V9, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DEFB129 MUTATED        0      1      0      0      2      0      1      0
  DEFB129 WILD-TYPE     40     61     28     80     67     48     42     28
                   vv
clus                CLUS_9
  DEFB129 MUTATED        1
  DEFB129 WILD-TYPE     73
D1644V10, multiclass
        clus
vv       DEFB129 MUTATED DEFB129 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEFB129 MUTATED        0      0      0      2
  DEFB129 WILD-TYPE     33     31     27     17
D1644V11, multiclass
[1] "Remove cluster labels:" "DEFB129 MUTATED"       
clus
  DEFB129 MUTATED DEFB129 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEFB129 MUTATED        2      0      0      0
  DEFB129 WILD-TYPE     52     10     24     22
D1644V12, multiclass
[1] "Remove cluster labels:" "DEFB129 MUTATED"       
clus
  DEFB129 MUTATED DEFB129 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G5-6235        TCGA-G5-6641 
"DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" "DEFB129 WILD-TYPE" 

Clustering(1645) Variable = EFNB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        1      0      2      0
  EFNB3 WILD-TYPE     45     58     62     43
D1645V1, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNB3 MUTATED        1      0      2
  EFNB3 WILD-TYPE     50     83     75
D1645V2, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        6      1      2      0
  EFNB3 WILD-TYPE    172    182     99     20
D1645V3, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNB3 MUTATED        1      0      4
  EFNB3 WILD-TYPE     86     80     96
D1645V4, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNB3 MUTATED        1      4      2
  EFNB3 WILD-TYPE     88    156    136
D1645V5, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNB3 MUTATED        3      3      1
  EFNB3 WILD-TYPE    179    130     71
D1645V6, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        1      5      0      3
  EFNB3 WILD-TYPE    111     91     92    183
D1645V7, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFNB3 MUTATED        1      1      2      1      0      1      3
  EFNB3 WILD-TYPE     59     49     47     39     63    124     96
D1645V8, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        3      0      1      5
  EFNB3 WILD-TYPE    127     78     67    191
D1645V9, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFNB3 MUTATED        1      1      0      1      2      0      1      0
  EFNB3 WILD-TYPE     39     61     28     79     67     48     42     28
                 vv
clus              CLUS_9
  EFNB3 MUTATED        3
  EFNB3 WILD-TYPE     71
D1645V10, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        1      0      0      1
  EFNB3 WILD-TYPE     32     31     27     18
D1645V11, multiclass
[1] "Remove cluster labels:" "EFNB3 MUTATED"         
clus
  EFNB3 MUTATED EFNB3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        0      0      1      1
  EFNB3 WILD-TYPE     54     10     23     21
D1645V12, multiclass
[1] "Remove cluster labels:" "EFNB3 MUTATED"         
clus
  EFNB3 MUTATED EFNB3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" "EFNB3 WILD-TYPE" 

Clustering(1646) Variable = DYRK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK3 MUTATED        2      1      0      3
  DYRK3 WILD-TYPE     44     57     64     40
D1646V1, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK3 MUTATED        4      1      1
  DYRK3 WILD-TYPE     47     82     76
D1646V2, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK3 MUTATED       14      0      2      0
  DYRK3 WILD-TYPE    164    183     99     20
D1646V3, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK3 MUTATED        3      1      5
  DYRK3 WILD-TYPE     84     79     95
D1646V4, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK3 MUTATED        2      6      6
  DYRK3 WILD-TYPE     87    154    132
D1646V5, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK3 MUTATED        6      7      1
  DYRK3 WILD-TYPE    176    126     71
D1646V6, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK3 MUTATED        1      4      3      8
  DYRK3 WILD-TYPE    111     92     89    178
D1646V7, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DYRK3 MUTATED        1      2      4      0      1      1      7
  DYRK3 WILD-TYPE     59     48     45     40     62    124     92
D1646V8, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK3 MUTATED        6      1      0      8
  DYRK3 WILD-TYPE    124     77     68    188
D1646V9, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DYRK3 MUTATED        1      2      2      1      4      0      1      2
  DYRK3 WILD-TYPE     39     60     26     79     65     48     42     26
                 vv
clus              CLUS_9
  DYRK3 MUTATED        2
  DYRK3 WILD-TYPE     72
D1646V10, multiclass
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK3 MUTATED        0      0      0      2
  DYRK3 WILD-TYPE     33     31     27     17
D1646V11, multiclass
[1] "Remove cluster labels:" "DYRK3 MUTATED"         
clus
  DYRK3 MUTATED DYRK3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK3 MUTATED        1      0      1      0
  DYRK3 WILD-TYPE     53     10     23     22
D1646V12, multiclass
[1] "Remove cluster labels:" "DYRK3 MUTATED"         
clus
  DYRK3 MUTATED DYRK3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 

Clustering(1647) Variable = ZBTB24 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB24 MUTATED        0      0      0      3
  ZBTB24 WILD-TYPE     46     58     64     40
D1647V1, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB24 MUTATED        1      1      1
  ZBTB24 WILD-TYPE     50     82     76
D1647V2, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB24 MUTATED        7      3      1      0
  ZBTB24 WILD-TYPE    171    180    100     20
D1647V3, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB24 MUTATED        3      2      3
  ZBTB24 WILD-TYPE     84     78     97
D1647V4, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB24 MUTATED        2      5      4
  ZBTB24 WILD-TYPE     87    155    134
D1647V5, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB24 MUTATED        3      7      1
  ZBTB24 WILD-TYPE    179    126     71
D1647V6, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB24 MUTATED        2      3      2      4
  ZBTB24 WILD-TYPE    110     93     90    182
D1647V7, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB24 MUTATED        3      0      3      1      1      0      3
  ZBTB24 WILD-TYPE     57     50     46     39     62    125     96
D1647V8, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB24 MUTATED        2      3      2      4
  ZBTB24 WILD-TYPE    128     75     66    192
D1647V9, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZBTB24 MUTATED        0      3      1      0      5      1      1      0
  ZBTB24 WILD-TYPE     40     59     27     80     64     47     42     28
                  vv
clus               CLUS_9
  ZBTB24 MUTATED        0
  ZBTB24 WILD-TYPE     74
D1647V10, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB24 MUTATED        2      1      1      1
  ZBTB24 WILD-TYPE     31     30     26     18
D1647V11, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB24 MUTATED        3      0      1      1
  ZBTB24 WILD-TYPE     51     10     23     21
D1647V12, multiclass
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1648) Variable = TNRC6B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6B MUTATED        1      0      3      1
  TNRC6B WILD-TYPE     45     58     61     42
D1648V1, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              3               61
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6B MUTATED        1      2      2
  TNRC6B WILD-TYPE     50     81     75
D1648V2, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6B MUTATED       16      3      1      3
  TNRC6B WILD-TYPE    162    180    100     17
D1648V3, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1             16              162
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6B MUTATED        5      2      9
  TNRC6B WILD-TYPE     82     78     91
D1648V4, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6B MUTATED        3      8      8
  TNRC6B WILD-TYPE     86    152    130
D1648V5, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              3               86
  CLUS_2              8              152
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6B MUTATED        9      6      4
  TNRC6B WILD-TYPE    173    127     68
D1648V6, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              9              173
  CLUS_2              6              127
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6B MUTATED        3     10      3      7
  TNRC6B WILD-TYPE    109     86     89    179
D1648V7, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              3              109
  CLUS_2             10               86
  CLUS_3              3               89
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC6B MUTATED        2      4      7      1      2      3      4
  TNRC6B WILD-TYPE     58     46     42     39     61    122     95
D1648V8, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6B MUTATED        7      5      2      9
  TNRC6B WILD-TYPE    123     73     66    187
D1648V9, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              7              123
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNRC6B MUTATED        3      3      1      0      8      2      0      0
  TNRC6B WILD-TYPE     37     59     27     80     61     46     43     28
                  vv
clus               CLUS_9
  TNRC6B MUTATED        6
  TNRC6B WILD-TYPE     68
D1648V10, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              8               61
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              6               68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6B MUTATED        2      1      0      2
  TNRC6B WILD-TYPE     31     30     27     17
D1648V11, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6B MUTATED        3      0      1      1
  TNRC6B WILD-TYPE     51     10     23     21
D1648V12, multiclass
        clus
vv       TNRC6B MUTATED TNRC6B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1649) Variable = PAK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        2      0      0      2
  PAK1 WILD-TYPE     44     58     64     41
D1649V1, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK1 MUTATED        1      2      1
  PAK1 WILD-TYPE     50     81     76
D1649V2, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        9      0      1      1
  PAK1 WILD-TYPE    169    183    100     19
D1649V3, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK1 MUTATED        3      0      3
  PAK1 WILD-TYPE     84     80     97
D1649V4, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK1 MUTATED        1      1      6
  PAK1 WILD-TYPE     88    159    132
D1649V5, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAK1 MUTATED        4      3      1
  PAK1 WILD-TYPE    178    130     71
D1649V6, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        1      3      2      5
  PAK1 WILD-TYPE    111     93     90    181
D1649V7, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAK1 MUTATED        1      1      2      1      1      1      4
  PAK1 WILD-TYPE     59     49     47     39     62    124     95
D1649V8, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        3      1      0      7
  PAK1 WILD-TYPE    127     77     68    189
D1649V9, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAK1 MUTATED        1      1      2      2      3      0      1      0      1
  PAK1 WILD-TYPE     39     61     26     78     66     48     42     28     73
D1649V10, multiclass
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        0      0      0      1
  PAK1 WILD-TYPE     33     31     27     18
D1649V11, multiclass
[1] "Remove cluster labels:" "PAK1 MUTATED"          
clus
  PAK1 MUTATED PAK1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-G5-6641 
"PAK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAK1 MUTATED        1      0      0      0
  PAK1 WILD-TYPE     53     10     24     22
D1649V12, multiclass
[1] "Remove cluster labels:" "PAK1 MUTATED"          
clus
  PAK1 MUTATED PAK1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-G5-6641 
"PAK1 WILD-TYPE" 

Clustering(1650) Variable = PODXL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        3      0      0      0
  PODXL WILD-TYPE     43     58     64     43
D1650V1, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PODXL MUTATED        3      0      0
  PODXL WILD-TYPE     48     83     77
D1650V2, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        6      0      2      2
  PODXL WILD-TYPE    172    183     99     18
D1650V3, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PODXL MUTATED        2      1      4
  PODXL WILD-TYPE     85     79     96
D1650V4, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PODXL MUTATED        0      4      3
  PODXL WILD-TYPE     89    156    135
D1650V5, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PODXL MUTATED        1      5      1
  PODXL WILD-TYPE    181    128     71
D1650V6, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             1             181
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        2      2      3      3
  PODXL WILD-TYPE    110     94     89    183
D1650V7, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PODXL MUTATED        2      1      2      1      1      0      3
  PODXL WILD-TYPE     58     49     47     39     62    125     96
D1650V8, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        3      2      0      5
  PODXL WILD-TYPE    127     76     68    191
D1650V9, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PODXL MUTATED        0      0      0      3      3      1      1      1
  PODXL WILD-TYPE     40     62     28     77     66     47     42     27
                 vv
clus              CLUS_9
  PODXL MUTATED        1
  PODXL WILD-TYPE     73
D1650V10, multiclass
        clus
vv       PODXL MUTATED PODXL WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        0      1      0      1
  PODXL WILD-TYPE     33     30     27     18
D1650V11, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6889      TCGA-AD-6901 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-4110 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODXL MUTATED        1      0      0      1
  PODXL WILD-TYPE     53     10     24     21
D1650V12, multiclass
[1] "Remove cluster labels:" "PODXL MUTATED"         
clus
  PODXL MUTATED PODXL WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6889      TCGA-AD-6901 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-4110 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" "PODXL WILD-TYPE" 

Clustering(1651) Variable = OR5AK2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AK2 MUTATED        2      0      0      1
  OR5AK2 WILD-TYPE     44     58     64     42
D1651V1, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AK2 MUTATED        2      1      0
  OR5AK2 WILD-TYPE     49     82     77
D1651V2, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AK2 MUTATED        5      3      1      0
  OR5AK2 WILD-TYPE    173    180    100     20
D1651V3, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AK2 MUTATED        2      2      2
  OR5AK2 WILD-TYPE     85     78     98
D1651V4, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AK2 MUTATED        1      3      4
  OR5AK2 WILD-TYPE     88    157    134
D1651V5, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AK2 MUTATED        4      2      2
  OR5AK2 WILD-TYPE    178    131     70
D1651V6, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AK2 MUTATED        2      1      3      3
  OR5AK2 WILD-TYPE    110     95     89    183
D1651V7, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5AK2 MUTATED        1      2      3      0      0      0      3
  OR5AK2 WILD-TYPE     59     48     46     40     63    125     96
D1651V8, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AK2 MUTATED        4      1      1      3
  OR5AK2 WILD-TYPE    126     77     67    193
D1651V9, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5AK2 MUTATED        0      1      3      1      2      0      2      0
  OR5AK2 WILD-TYPE     40     61     25     79     67     48     41     28
                  vv
clus               CLUS_9
  OR5AK2 MUTATED        0
  OR5AK2 WILD-TYPE     74
D1651V10, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AK2 MUTATED        3      0      0      1
  OR5AK2 WILD-TYPE     30     31     27     18
D1651V11, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AK2 MUTATED        2      0      1      1
  OR5AK2 WILD-TYPE     52     10     23     21
D1651V12, multiclass
        clus
vv       OR5AK2 MUTATED OR5AK2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1652) Variable = LGALS9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9 MUTATED        1      1      0      0
  LGALS9 WILD-TYPE     45     57     64     43
D1652V1, multiclass
[1] "Remove cluster labels:" "LGALS9 MUTATED"        
clus
  LGALS9 MUTATED LGALS9 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AY-4071 
"LGALS9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LGALS9 MUTATED        1      1      0
  LGALS9 WILD-TYPE     50     82     77
D1652V2, multiclass
[1] "Remove cluster labels:" "LGALS9 MUTATED"        
clus
  LGALS9 MUTATED LGALS9 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" "LGALS9 WILD-TYPE" 
      TCGA-AY-4071 
"LGALS9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9 MUTATED        4      1      0      0
  LGALS9 WILD-TYPE    174    182    101     20
D1652V3, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LGALS9 MUTATED        1      0      2
  LGALS9 WILD-TYPE     86     80     98
D1652V4, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LGALS9 MUTATED        1      2      2
  LGALS9 WILD-TYPE     88    158    136
D1652V5, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LGALS9 MUTATED        1      3      1
  LGALS9 WILD-TYPE    181    130     71
D1652V6, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9 MUTATED        0      2      1      2
  LGALS9 WILD-TYPE    112     94     91    184
D1652V7, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LGALS9 MUTATED        0      0      3      0      0      1      1
  LGALS9 WILD-TYPE     60     50     46     40     63    124     98
D1652V8, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9 MUTATED        1      1      0      3
  LGALS9 WILD-TYPE    129     77     68    193
D1652V9, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LGALS9 MUTATED        1      1      0      1      1      0      0      1
  LGALS9 WILD-TYPE     39     61     28     79     68     48     43     27
                  vv
clus               CLUS_9
  LGALS9 MUTATED        0
  LGALS9 WILD-TYPE     74
D1652V10, multiclass
        clus
vv       LGALS9 MUTATED LGALS9 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9 MUTATED        0      0      0      0
  LGALS9 WILD-TYPE     33     31     27     19
D1652V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LGALS9 MUTATED        0      0      0      0
  LGALS9 WILD-TYPE     54     10     24     22
D1652V12, multiclass

Clustering(1653) Variable = IRGQ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRGQ MUTATED        1      0      0      0
  IRGQ WILD-TYPE     45     58     64     43
D1653V1, multiclass
[1] "Remove cluster labels:" "IRGQ MUTATED"          
clus
  IRGQ MUTATED IRGQ WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRGQ MUTATED        1      0      0
  IRGQ WILD-TYPE     50     83     77
D1653V2, multiclass
[1] "Remove cluster labels:" "IRGQ MUTATED"          
clus
  IRGQ MUTATED IRGQ WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRGQ MUTATED        4      1      0      0
  IRGQ WILD-TYPE    174    182    101     20
D1653V3, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRGQ MUTATED        1      0      3
  IRGQ WILD-TYPE     86     80     97
D1653V4, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRGQ MUTATED        0      1      4
  IRGQ WILD-TYPE     89    159    134
D1653V5, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRGQ MUTATED        3      2      0
  IRGQ WILD-TYPE    179    131     72
D1653V6, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRGQ MUTATED        1      2      1      1
  IRGQ WILD-TYPE    111     94     91    185
D1653V7, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IRGQ MUTATED        1      0      3      0      0      0      1
  IRGQ WILD-TYPE     59     50     46     40     63    125     98
D1653V8, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRGQ MUTATED        1      0      0      4
  IRGQ WILD-TYPE    129     78     68    192
D1653V9, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IRGQ MUTATED        0      0      0      0      3      1      0      1      0
  IRGQ WILD-TYPE     40     62     28     80     66     47     43     27     74
D1653V10, multiclass
        clus
vv       IRGQ MUTATED IRGQ WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRGQ MUTATED        0      0      0      2
  IRGQ WILD-TYPE     33     31     27     17
D1653V11, multiclass
[1] "Remove cluster labels:" "IRGQ MUTATED"          
clus
  IRGQ MUTATED IRGQ WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRGQ MUTATED        0      0      2      0
  IRGQ WILD-TYPE     54     10     22     22
D1653V12, multiclass
[1] "Remove cluster labels:" "IRGQ MUTATED"          
clus
  IRGQ MUTATED IRGQ WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-EI-6506     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" "IRGQ WILD-TYPE" 

Clustering(1654) Variable = NLRP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP1 MUTATED        3      2      1      5
  NLRP1 WILD-TYPE     43     56     63     38
D1654V1, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP1 MUTATED        5      3      3
  NLRP1 WILD-TYPE     46     80     74
D1654V2, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             3              80
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP1 MUTATED       19      4      5      0
  NLRP1 WILD-TYPE    159    179     96     20
D1654V3, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             4             179
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP1 MUTATED        5      3      9
  NLRP1 WILD-TYPE     82     77     91
D1654V4, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP1 MUTATED        4      9     10
  NLRP1 WILD-TYPE     85    151    128
D1654V5, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             9             151
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP1 MUTATED       11     10      2
  NLRP1 WILD-TYPE    171    123     70
D1654V6, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1            11             171
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP1 MUTATED        5      6      7     10
  NLRP1 WILD-TYPE    107     90     85    176
D1654V7, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP1 MUTATED        2      6      4      1      3      3      9
  NLRP1 WILD-TYPE     58     44     45     39     60    122     90
D1654V8, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             6              44
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             3             122
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP1 MUTATED       11      3      1     12
  NLRP1 WILD-TYPE    119     75     67    184
D1654V9, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NLRP1 MUTATED        1      4      3      5      5      2      2      1
  NLRP1 WILD-TYPE     39     58     25     75     64     46     41     27
                 vv
clus              CLUS_9
  NLRP1 MUTATED        4
  NLRP1 WILD-TYPE     70
D1654V10, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             5              75
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP1 MUTATED        1      2      0      3
  NLRP1 WILD-TYPE     32     29     27     16
D1654V11, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP1 MUTATED        2      1      1      2
  NLRP1 WILD-TYPE     52      9     23     20
D1654V12, multiclass
        clus
vv       NLRP1 MUTATED NLRP1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1655) Variable = TPR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPR MUTATED        5      0      1      5
  TPR WILD-TYPE     41     58     63     38
D1655V1, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           5            41
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           5            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TPR MUTATED        7      3      1
  TPR WILD-TYPE     44     80     76
D1655V2, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           7            44
  CLUS_2           3            80
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPR MUTATED       15      4      5      1
  TPR WILD-TYPE    163    179     96     19
D1655V3, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1          15           163
  CLUS_2           4           179
  CLUS_3           5            96
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TPR MUTATED        4      2      7
  TPR WILD-TYPE     83     78     93
D1655V4, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           4            83
  CLUS_2           2            78
  CLUS_3           7            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TPR MUTATED        3     10      5
  TPR WILD-TYPE     86    150    133
D1655V5, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           3            86
  CLUS_2          10           150
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TPR MUTATED        6      6      6
  TPR WILD-TYPE    176    127     66
D1655V6, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           6           176
  CLUS_2           6           127
  CLUS_3           6            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPR MUTATED        2      6      4     13
  TPR WILD-TYPE    110     90     88    173
D1655V7, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           2           110
  CLUS_2           6            90
  CLUS_3           4            88
  CLUS_4          13           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPR MUTATED        3      2      6      0      1      3     10
  TPR WILD-TYPE     57     48     43     40     62    122     89
D1655V8, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           3            57
  CLUS_2           2            48
  CLUS_3           6            43
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           3           122
  CLUS_7          10            89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPR MUTATED        7      3      0     14
  TPR WILD-TYPE    123     75     68    182
D1655V9, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           7           123
  CLUS_2           3            75
  CLUS_3           0            68
  CLUS_4          14           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TPR MUTATED        1      4      1      4     11      0      0      0      3
  TPR WILD-TYPE     39     58     27     76     58     48     43     28     71
D1655V10, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           1            39
  CLUS_2           4            58
  CLUS_3           1            27
  CLUS_4           4            76
  CLUS_5          11            58
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           3            71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPR MUTATED        3      0      0      1
  TPR WILD-TYPE     30     31     27     18
D1655V11, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           3            30
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPR MUTATED        3      0      1      0
  TPR WILD-TYPE     51     10     23     22
D1655V12, multiclass
        clus
vv       TPR MUTATED TPR WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1656) Variable = METT5D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT5D1 MUTATED        1      0      0      0
  METT5D1 WILD-TYPE     45     58     64     43
D1656V1, multiclass
[1] "Remove cluster labels:" "METT5D1 MUTATED"       
clus
  METT5D1 MUTATED METT5D1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT5D1 MUTATED        1      0      0
  METT5D1 WILD-TYPE     50     83     77
D1656V2, multiclass
[1] "Remove cluster labels:" "METT5D1 MUTATED"       
clus
  METT5D1 MUTATED METT5D1 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"METT5D1 WILD-TYPE" "METT5D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT5D1 MUTATED        3      1      3      0
  METT5D1 WILD-TYPE    175    182     98     20
D1656V3, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT5D1 MUTATED        1      1      4
  METT5D1 WILD-TYPE     86     79     96
D1656V4, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT5D1 MUTATED        0      2      3
  METT5D1 WILD-TYPE     89    158    135
D1656V5, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT5D1 MUTATED        4      1      0
  METT5D1 WILD-TYPE    178    132     72
D1656V6, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT5D1 MUTATED        1      4      1      1
  METT5D1 WILD-TYPE    111     92     91    185
D1656V7, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  METT5D1 MUTATED        1      1      3      1      0      0      1
  METT5D1 WILD-TYPE     59     49     46     39     63    125     98
D1656V8, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT5D1 MUTATED        3      1      2      1
  METT5D1 WILD-TYPE    127     77     66    195
D1656V9, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               2                66
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  METT5D1 MUTATED        1      1      0      0      3      1      1      0
  METT5D1 WILD-TYPE     39     61     28     80     66     47     42     28
                   vv
clus                CLUS_9
  METT5D1 MUTATED        0
  METT5D1 WILD-TYPE     74
D1656V10, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT5D1 MUTATED        2      0      2      0
  METT5D1 WILD-TYPE     31     31     25     19
D1656V11, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               2                25
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT5D1 MUTATED        1      1      1      1
  METT5D1 WILD-TYPE     53      9     23     21
D1656V12, multiclass
        clus
vv       METT5D1 MUTATED METT5D1 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1657) Variable = BCAP29 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAP29 MUTATED        1      0      0      0
  BCAP29 WILD-TYPE     45     58     64     43
D1657V1, multiclass
[1] "Remove cluster labels:" "BCAP29 MUTATED"        
clus
  BCAP29 MUTATED BCAP29 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCAP29 MUTATED        1      0      0
  BCAP29 WILD-TYPE     50     83     77
D1657V2, multiclass
[1] "Remove cluster labels:" "BCAP29 MUTATED"        
clus
  BCAP29 MUTATED BCAP29 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAP29 MUTATED        6      0      2      0
  BCAP29 WILD-TYPE    172    183     99     20
D1657V3, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCAP29 MUTATED        2      0      5
  BCAP29 WILD-TYPE     85     80     95
D1657V4, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCAP29 MUTATED        1      1      3
  BCAP29 WILD-TYPE     88    159    135
D1657V5, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCAP29 MUTATED        3      1      1
  BCAP29 WILD-TYPE    179    132     71
D1657V6, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAP29 MUTATED        0      3      4      1
  BCAP29 WILD-TYPE    112     93     88    185
D1657V7, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCAP29 MUTATED        1      0      3      1      2      0      1
  BCAP29 WILD-TYPE     59     50     46     39     61    125     98
D1657V8, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAP29 MUTATED        5      2      0      1
  BCAP29 WILD-TYPE    125     76     68    195
D1657V9, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BCAP29 MUTATED        1      3      1      1      1      0      1      0
  BCAP29 WILD-TYPE     39     59     27     79     68     48     42     28
                  vv
clus               CLUS_9
  BCAP29 MUTATED        0
  BCAP29 WILD-TYPE     74
D1657V10, multiclass
        clus
vv       BCAP29 MUTATED BCAP29 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAP29 MUTATED        0      0      0      1
  BCAP29 WILD-TYPE     33     31     27     18
D1657V11, multiclass
[1] "Remove cluster labels:" "BCAP29 MUTATED"        
clus
  BCAP29 MUTATED BCAP29 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-G5-6641 
"BCAP29 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCAP29 MUTATED        1      0      0      0
  BCAP29 WILD-TYPE     53     10     24     22
D1657V12, multiclass
[1] "Remove cluster labels:" "BCAP29 MUTATED"        
clus
  BCAP29 MUTATED BCAP29 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" "BCAP29 WILD-TYPE" 
      TCGA-G5-6641 
"BCAP29 WILD-TYPE" 

Clustering(1658) Variable = MSH5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH5 MUTATED        2      0      1      2
  MSH5 WILD-TYPE     44     58     63     41
D1658V1, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH5 MUTATED        2      1      2
  MSH5 WILD-TYPE     49     82     75
D1658V2, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH5 MUTATED        6      1      1      0
  MSH5 WILD-TYPE    172    182    100     20
D1658V3, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH5 MUTATED        1      0      2
  MSH5 WILD-TYPE     86     80     98
D1658V4, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH5 MUTATED        2      0      3
  MSH5 WILD-TYPE     87    160    135
D1658V5, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            0            160
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH5 MUTATED        2      1      2
  MSH5 WILD-TYPE    180    132     70
D1658V6, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH5 MUTATED        0      2      1      5
  MSH5 WILD-TYPE    112     94     91    181
D1658V7, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MSH5 MUTATED        0      0      2      0      1      1      4
  MSH5 WILD-TYPE     60     50     47     40     62    124     95
D1658V8, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH5 MUTATED        2      0      0      6
  MSH5 WILD-TYPE    128     78     68    190
D1658V9, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MSH5 MUTATED        0      0      1      3      3      0      1      0      0
  MSH5 WILD-TYPE     40     62     27     77     66     48     42     28     74
D1658V10, multiclass
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH5 MUTATED        0      0      0      0
  MSH5 WILD-TYPE     33     31     27     19
D1658V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH5 MUTATED        0      0      0      0
  MSH5 WILD-TYPE     54     10     24     22
D1658V12, multiclass

Clustering(1659) Variable = BTBD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        5      1      0      3
  BTBD11 WILD-TYPE     41     57     64     40
D1659V1, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        6      2      1
  BTBD11 WILD-TYPE     45     81     76
D1659V2, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              6               45
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED       20      2      0      1
  BTBD11 WILD-TYPE    158    181    101     19
D1659V3, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             20              158
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        7      1      6
  BTBD11 WILD-TYPE     80     79     94
D1659V4, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        3      7      8
  BTBD11 WILD-TYPE     86    153    130
D1659V5, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              7              153
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        8      6      4
  BTBD11 WILD-TYPE    174    127     68
D1659V6, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              6              127
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        2      7      5      9
  BTBD11 WILD-TYPE    110     89     87    177
D1659V7, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              5               87
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTBD11 MUTATED        2      2      7      1      1      2      8
  BTBD11 WILD-TYPE     58     48     42     39     62    123     91
D1659V8, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        5      4      1     13
  BTBD11 WILD-TYPE    125     74     67    183
D1659V9, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BTBD11 MUTATED        1      5      2      2      9      0      1      0
  BTBD11 WILD-TYPE     39     57     26     78     60     48     42     28
                  vv
clus               CLUS_9
  BTBD11 MUTATED        3
  BTBD11 WILD-TYPE     71
D1659V10, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        1      0      0      3
  BTBD11 WILD-TYPE     32     31     27     16
D1659V11, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        4      0      0      0
  BTBD11 WILD-TYPE     50     10     24     22
D1659V12, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1660) Variable = ATAD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD1 MUTATED        1      0      0      1
  ATAD1 WILD-TYPE     45     58     64     42
D1660V1, multiclass
[1] "Remove cluster labels:" "ATAD1 MUTATED"         
clus
  ATAD1 MUTATED ATAD1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AY-4071 
"ATAD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD1 MUTATED        1      0      1
  ATAD1 WILD-TYPE     50     83     76
D1660V2, multiclass
[1] "Remove cluster labels:" "ATAD1 MUTATED"         
clus
  ATAD1 MUTATED ATAD1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AY-4071 
"ATAD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD1 MUTATED        8      1      0      0
  ATAD1 WILD-TYPE    170    182    101     20
D1660V3, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD1 MUTATED        4      0      3
  ATAD1 WILD-TYPE     83     80     97
D1660V4, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD1 MUTATED        0      3      5
  ATAD1 WILD-TYPE     89    157    133
D1660V5, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD1 MUTATED        3      4      1
  ATAD1 WILD-TYPE    179    129     71
D1660V6, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD1 MUTATED        1      3      3      2
  ATAD1 WILD-TYPE    111     93     89    184
D1660V7, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATAD1 MUTATED        1      2      3      1      1      0      1
  ATAD1 WILD-TYPE     59     48     46     39     62    125     98
D1660V8, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD1 MUTATED        3      2      0      4
  ATAD1 WILD-TYPE    127     76     68    192
D1660V9, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATAD1 MUTATED        1      3      0      1      3      0      0      0
  ATAD1 WILD-TYPE     39     59     28     79     66     48     43     28
                 vv
clus              CLUS_9
  ATAD1 MUTATED        1
  ATAD1 WILD-TYPE     73
D1660V10, multiclass
        clus
vv       ATAD1 MUTATED ATAD1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD1 MUTATED        0      0      1      1
  ATAD1 WILD-TYPE     33     31     26     18
D1660V11, multiclass
[1] "Remove cluster labels:" "ATAD1 MUTATED"         
clus
  ATAD1 MUTATED ATAD1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DY-A1DC 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD1 MUTATED        1      0      1      0
  ATAD1 WILD-TYPE     53     10     23     22
D1660V12, multiclass
[1] "Remove cluster labels:" "ATAD1 MUTATED"         
clus
  ATAD1 MUTATED ATAD1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DY-A1DC 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" "ATAD1 WILD-TYPE" 

Clustering(1661) Variable = PRPF4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        1      0      1      2
  PRPF4B WILD-TYPE     45     58     63     41
D1661V1, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRPF4B MUTATED        1      2      1
  PRPF4B WILD-TYPE     50     81     76
D1661V2, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED       11      3      2      0
  PRPF4B WILD-TYPE    167    180     99     20
D1661V3, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1             11              167
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRPF4B MUTATED        4      3      5
  PRPF4B WILD-TYPE     83     77     95
D1661V4, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRPF4B MUTATED        1      5      6
  PRPF4B WILD-TYPE     88    155    132
D1661V5, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRPF4B MUTATED        6      4      2
  PRPF4B WILD-TYPE    176    129     70
D1661V6, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        4      3      6      3
  PRPF4B WILD-TYPE    108     93     86    183
D1661V7, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              6               86
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRPF4B MUTATED        4      0      6      1      1      1      3
  PRPF4B WILD-TYPE     56     50     43     39     62    124     96
D1661V8, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        6      5      0      4
  PRPF4B WILD-TYPE    124     73     68    192
D1661V9, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              6              124
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRPF4B MUTATED        1      5      1      1      4      2      0      0
  PRPF4B WILD-TYPE     39     57     27     79     65     46     43     28
                  vv
clus               CLUS_9
  PRPF4B MUTATED        1
  PRPF4B WILD-TYPE     73
D1661V10, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               39
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        2      0      0      2
  PRPF4B WILD-TYPE     31     31     27     17
D1661V11, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        3      0      0      1
  PRPF4B WILD-TYPE     51     10     24     21
D1661V12, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1662) Variable = ARHGEF6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF6 MUTATED        5      0      1      1
  ARHGEF6 WILD-TYPE     41     58     63     42
D1662V1, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               5                41
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF6 MUTATED        4      1      2
  ARHGEF6 WILD-TYPE     47     82     75
D1662V2, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF6 MUTATED       12      2      0      1
  ARHGEF6 WILD-TYPE    166    181    101     19
D1662V3, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF6 MUTATED        3      1      4
  ARHGEF6 WILD-TYPE     84     79     96
D1662V4, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF6 MUTATED        0      6      6
  ARHGEF6 WILD-TYPE     89    154    132
D1662V5, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               6               154
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF6 MUTATED        4      6      2
  ARHGEF6 WILD-TYPE    178    127     70
D1662V6, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               6               127
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF6 MUTATED        2      3      2      8
  ARHGEF6 WILD-TYPE    110     93     90    178
D1662V7, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGEF6 MUTATED        2      2      3      0      1      1      6
  ARHGEF6 WILD-TYPE     58     48     46     40     62    124     93
D1662V8, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF6 MUTATED        3      2      1      9
  ARHGEF6 WILD-TYPE    127     76     67    187
D1662V9, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGEF6 MUTATED        0      2      0      3      5      0      2      2
  ARHGEF6 WILD-TYPE     40     60     28     77     64     48     41     26
                   vv
clus                CLUS_9
  ARHGEF6 MUTATED        1
  ARHGEF6 WILD-TYPE     73
D1662V10, multiclass
        clus
vv       ARHGEF6 MUTATED ARHGEF6 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               3                77
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               2                26
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF6 MUTATED        0      0      1      1
  ARHGEF6 WILD-TYPE     33     31     26     18
D1662V11, multiclass
[1] "Remove cluster labels:" "ARHGEF6 MUTATED"       
clus
  ARHGEF6 MUTATED ARHGEF6 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DY-A1DC 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF6 MUTATED        1      0      1      0
  ARHGEF6 WILD-TYPE     53     10     23     22
D1662V12, multiclass
[1] "Remove cluster labels:" "ARHGEF6 MUTATED"       
clus
  ARHGEF6 MUTATED ARHGEF6 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DY-A1DC 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" "ARHGEF6 WILD-TYPE" 

Clustering(1663) Variable = HK3 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK3 MUTATED        1      0      0      2
  HK3 WILD-TYPE     45     58     64     41
D1663V1, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK3 MUTATED        2      0      1
  HK3 WILD-TYPE     49     83     76
D1663V2, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           2            49
  CLUS_2           0            83
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK3 MUTATED       14      3      5      0
  HK3 WILD-TYPE    164    180     96     20
D1663V3, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1          14           164
  CLUS_2           3           180
  CLUS_3           5            96
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK3 MUTATED        2      4     11
  HK3 WILD-TYPE     85     76     89
D1663V4, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           2            85
  CLUS_2           4            76
  CLUS_3          11            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK3 MUTATED        2      6      7
  HK3 WILD-TYPE     87    154    131
D1663V5, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           2            87
  CLUS_2           6           154
  CLUS_3           7           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HK3 MUTATED        7      6      2
  HK3 WILD-TYPE    175    127     70
D1663V6, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           7           175
  CLUS_2           6           127
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK3 MUTATED        2     10      3      7
  HK3 WILD-TYPE    110     86     89    179
D1663V7, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           2           110
  CLUS_2          10            86
  CLUS_3           3            89
  CLUS_4           7           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HK3 MUTATED        2      2      9      2      1      1      5
  HK3 WILD-TYPE     58     48     40     38     62    124     94
D1663V8, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           2            58
  CLUS_2           2            48
  CLUS_3           9            40
  CLUS_4           2            38
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK3 MUTATED        9      0      5      8
  HK3 WILD-TYPE    121     78     63    188
D1663V9, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           9           121
  CLUS_2           0            78
  CLUS_3           5            63
  CLUS_4           8           188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HK3 MUTATED        1      2      2      0     10      0      5      0      2
  HK3 WILD-TYPE     39     60     26     80     59     48     38     28     72
D1663V10, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           2            26
  CLUS_4           0            80
  CLUS_5          10            59
  CLUS_6           0            48
  CLUS_7           5            38
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK3 MUTATED        0      0      3      2
  HK3 WILD-TYPE     33     31     24     17
D1663V11, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           3            24
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HK3 MUTATED        2      1      2      0
  HK3 WILD-TYPE     52      9     22     22
D1663V12, multiclass
        clus
vv       HK3 MUTATED HK3 WILD-TYPE
  CLUS_1           2            52
  CLUS_2           1             9
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1664) Variable = OR5R1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5R1 MUTATED        3      0      1      0
  OR5R1 WILD-TYPE     43     58     63     43
D1664V1, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5R1 MUTATED        2      2      0
  OR5R1 WILD-TYPE     49     81     77
D1664V2, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5R1 MUTATED        8      4      2      0
  OR5R1 WILD-TYPE    170    179     99     20
D1664V3, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5R1 MUTATED        3      4      3
  OR5R1 WILD-TYPE     84     76     97
D1664V4, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4              76
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5R1 MUTATED        1      3      6
  OR5R1 WILD-TYPE     88    157    132
D1664V5, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5R1 MUTATED        5      4      1
  OR5R1 WILD-TYPE    177    129     71
D1664V6, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5R1 MUTATED        5      3      1      5
  OR5R1 WILD-TYPE    107     93     91    181
D1664V7, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5R1 MUTATED        2      2      1      1      2      3      3
  OR5R1 WILD-TYPE     58     48     48     39     61    122     96
D1664V8, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5R1 MUTATED        5      2      1      6
  OR5R1 WILD-TYPE    125     76     67    190
D1664V9, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5R1 MUTATED        1      2      0      2      3      2      1      0
  OR5R1 WILD-TYPE     39     60     28     78     66     46     42     28
                 vv
clus              CLUS_9
  OR5R1 MUTATED        3
  OR5R1 WILD-TYPE     71
D1664V10, multiclass
        clus
vv       OR5R1 MUTATED OR5R1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5R1 MUTATED        0      0      0      2
  OR5R1 WILD-TYPE     33     31     27     17
D1664V11, multiclass
[1] "Remove cluster labels:" "OR5R1 MUTATED"         
clus
  OR5R1 MUTATED OR5R1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5R1 MUTATED        0      0      1      1
  OR5R1 WILD-TYPE     54     10     23     21
D1664V12, multiclass
[1] "Remove cluster labels:" "OR5R1 MUTATED"         
clus
  OR5R1 MUTATED OR5R1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" "OR5R1 WILD-TYPE" 

Clustering(1665) Variable = TCEANC MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEANC MUTATED        3      0      0      2
  TCEANC WILD-TYPE     43     58     64     41
D1665V1, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEANC MUTATED        3      1      1
  TCEANC WILD-TYPE     48     82     76
D1665V2, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEANC MUTATED        8      0      0      1
  TCEANC WILD-TYPE    170    183    101     19
D1665V3, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEANC MUTATED        2      0      2
  TCEANC WILD-TYPE     85     80     98
D1665V4, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEANC MUTATED        0      4      4
  TCEANC WILD-TYPE     89    156    134
D1665V5, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCEANC MUTATED        3      4      1
  TCEANC WILD-TYPE    179    129     71
D1665V6, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              3              179
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEANC MUTATED        0      1      3      5
  TCEANC WILD-TYPE    112     95     89    181
D1665V7, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCEANC MUTATED        1      0      4      0      0      1      3
  TCEANC WILD-TYPE     59     50     45     40     63    124     96
D1665V8, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEANC MUTATED        1      2      0      5
  TCEANC WILD-TYPE    129     76     68    191
D1665V9, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TCEANC MUTATED        0      2      0      1      4      0      0      1
  TCEANC WILD-TYPE     40     60     28     79     65     48     43     27
                  vv
clus               CLUS_9
  TCEANC MUTATED        0
  TCEANC WILD-TYPE     74
D1665V10, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEANC MUTATED        1      0      0      2
  TCEANC WILD-TYPE     32     31     27     17
D1665V11, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEANC MUTATED        2      0      1      0
  TCEANC WILD-TYPE     52     10     23     22
D1665V12, multiclass
        clus
vv       TCEANC MUTATED TCEANC WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1666) Variable = GJA10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GJA10 MUTATED        1      0      0      4
  GJA10 WILD-TYPE     45     58     64     39
D1666V1, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GJA10 MUTATED        1      2      2
  GJA10 WILD-TYPE     50     81     75
D1666V2, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GJA10 MUTATED       12      1      0      0
  GJA10 WILD-TYPE    166    182    101     20
D1666V3, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GJA10 MUTATED        3      0      2
  GJA10 WILD-TYPE     84     80     98
D1666V4, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GJA10 MUTATED        1      8      4
  GJA10 WILD-TYPE     88    152    134
D1666V5, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GJA10 MUTATED        6      7      0
  GJA10 WILD-TYPE    176    126     72
D1666V6, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             7             126
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GJA10 MUTATED        3      2      3      6
  GJA10 WILD-TYPE    109     94     89    180
D1666V7, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GJA10 MUTATED        3      1      3      0      1      2      4
  GJA10 WILD-TYPE     57     49     46     40     62    123     95
D1666V8, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GJA10 MUTATED        3      1      0      9
  GJA10 WILD-TYPE    127     77     68    187
D1666V9, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GJA10 MUTATED        1      3      1      3      3      0      0      0
  GJA10 WILD-TYPE     39     59     27     77     66     48     43     28
                 vv
clus              CLUS_9
  GJA10 MUTATED        2
  GJA10 WILD-TYPE     72
D1666V10, multiclass
        clus
vv       GJA10 MUTATED GJA10 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GJA10 MUTATED        0      0      0      1
  GJA10 WILD-TYPE     33     31     27     18
D1666V11, multiclass
[1] "Remove cluster labels:" "GJA10 MUTATED"         
clus
  GJA10 MUTATED GJA10 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-G5-6641 
"GJA10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GJA10 MUTATED        1      0      0      0
  GJA10 WILD-TYPE     53     10     24     22
D1666V12, multiclass
[1] "Remove cluster labels:" "GJA10 MUTATED"         
clus
  GJA10 MUTATED GJA10 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" "GJA10 WILD-TYPE" 
     TCGA-G5-6641 
"GJA10 WILD-TYPE" 

Clustering(1667) Variable = AP1G1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G1 MUTATED        2      0      0      2
  AP1G1 WILD-TYPE     44     58     64     41
D1667V1, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G1 MUTATED        2      1      1
  AP1G1 WILD-TYPE     49     82     76
D1667V2, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G1 MUTATED        8      4      1      0
  AP1G1 WILD-TYPE    170    179    100     20
D1667V3, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G1 MUTATED        4      2      3
  AP1G1 WILD-TYPE     83     78     97
D1667V4, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G1 MUTATED        0      5      5
  AP1G1 WILD-TYPE     89    155    133
D1667V5, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP1G1 MUTATED        2      6      2
  AP1G1 WILD-TYPE    180    127     70
D1667V6, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G1 MUTATED        4      4      1      4
  AP1G1 WILD-TYPE    108     92     91    182
D1667V7, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP1G1 MUTATED        4      2      2      0      2      1      2
  AP1G1 WILD-TYPE     56     48     47     40     61    124     97
D1667V8, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G1 MUTATED        5      2      1      4
  AP1G1 WILD-TYPE    125     76     67    192
D1667V9, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AP1G1 MUTATED        1      1      0      1      3      3      2      0
  AP1G1 WILD-TYPE     39     61     28     79     66     45     41     28
                 vv
clus              CLUS_9
  AP1G1 MUTATED        1
  AP1G1 WILD-TYPE     73
D1667V10, multiclass
        clus
vv       AP1G1 MUTATED AP1G1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             3              45
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G1 MUTATED        0      1      1      0
  AP1G1 WILD-TYPE     33     30     26     19
D1667V11, multiclass
[1] "Remove cluster labels:" "AP1G1 MUTATED"         
clus
  AP1G1 MUTATED AP1G1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6569 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP1G1 MUTATED        0      0      1      1
  AP1G1 WILD-TYPE     54     10     23     21
D1667V12, multiclass
[1] "Remove cluster labels:" "AP1G1 MUTATED"         
clus
  AP1G1 MUTATED AP1G1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6569 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" "AP1G1 WILD-TYPE" 

Clustering(1668) Variable = PLEKHA3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA3 MUTATED        0      1      0      2
  PLEKHA3 WILD-TYPE     46     57     64     41
D1668V1, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA3 MUTATED        0      2      1
  PLEKHA3 WILD-TYPE     51     81     76
D1668V2, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA3 MUTATED        6      2      0      0
  PLEKHA3 WILD-TYPE    172    181    101     20
D1668V3, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA3 MUTATED        2      0      3
  PLEKHA3 WILD-TYPE     85     80     97
D1668V4, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA3 MUTATED        0      4      1
  PLEKHA3 WILD-TYPE     89    156    137
D1668V5, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA3 MUTATED        2      3      0
  PLEKHA3 WILD-TYPE    180    130     72
D1668V6, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA3 MUTATED        1      3      2      2
  PLEKHA3 WILD-TYPE    111     93     90    184
D1668V7, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEKHA3 MUTATED        1      1      3      1      0      1      1
  PLEKHA3 WILD-TYPE     59     49     46     39     63    124     98
D1668V8, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA3 MUTATED        3      1      1      2
  PLEKHA3 WILD-TYPE    127     77     67    194
D1668V9, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLEKHA3 MUTATED        1      2      1      0      2      0      1      0
  PLEKHA3 WILD-TYPE     39     60     27     80     67     48     42     28
                   vv
clus                CLUS_9
  PLEKHA3 MUTATED        0
  PLEKHA3 WILD-TYPE     74
D1668V10, multiclass
        clus
vv       PLEKHA3 MUTATED PLEKHA3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA3 MUTATED        0      0      0      1
  PLEKHA3 WILD-TYPE     33     31     27     18
D1668V11, multiclass
[1] "Remove cluster labels:" "PLEKHA3 MUTATED"       
clus
  PLEKHA3 MUTATED PLEKHA3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-G5-6641 
"PLEKHA3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA3 MUTATED        0      0      1      0
  PLEKHA3 WILD-TYPE     54     10     23     22
D1668V12, multiclass
[1] "Remove cluster labels:" "PLEKHA3 MUTATED"       
clus
  PLEKHA3 MUTATED PLEKHA3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" "PLEKHA3 WILD-TYPE" 
       TCGA-G5-6641 
"PLEKHA3 WILD-TYPE" 

Clustering(1669) Variable = PCNA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCNA MUTATED        0      1      1      1
  PCNA WILD-TYPE     46     57     63     42
D1669V1, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCNA MUTATED        0      3      0
  PCNA WILD-TYPE     51     80     77
D1669V2, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            0             51
  CLUS_2            3             80
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCNA MUTATED        1      3      1      0
  PCNA WILD-TYPE    177    180    100     20
D1669V3, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            1            177
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCNA MUTATED        0      1      1
  PCNA WILD-TYPE     87     79     99
D1669V4, multiclass
[1] "Remove cluster labels:" "PCNA MUTATED"          
clus
  PCNA MUTATED PCNA WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AD-6890     TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AF-2693     TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-4681     TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CK-4948     TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CK-5913     TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CK-6746     TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CL-5917     TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6929     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-7000     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XD 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4     TCGA-DM-A1D6 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB     TCGA-DM-A282 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A285     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DM-A28H     TCGA-DM-A28K     TCGA-DT-5265 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DY-A0XA     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G5-6641 
"PCNA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCNA MUTATED        0      3      1
  PCNA WILD-TYPE     89    157    137
D1669V5, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCNA MUTATED        2      1      1
  PCNA WILD-TYPE    180    132     71
D1669V6, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            2            180
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCNA MUTATED        0      0      2      3
  PCNA WILD-TYPE    112     96     90    183
D1669V7, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCNA MUTATED        0      0      0      0      2      2      1
  PCNA WILD-TYPE     60     50     49     40     61    123     98
D1669V8, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCNA MUTATED        1      0      2      2
  PCNA WILD-TYPE    129     78     66    194
D1669V9, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0             78
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PCNA MUTATED        0      2      1      0      0      0      0      0      2
  PCNA WILD-TYPE     40     60     27     80     69     48     43     28     72
D1669V10, multiclass
        clus
vv       PCNA MUTATED PCNA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCNA MUTATED        0      1      0      0
  PCNA WILD-TYPE     33     30     27     19
D1669V11, multiclass
[1] "Remove cluster labels:" "PCNA MUTATED"          
clus
  PCNA MUTATED PCNA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G5-6641 
"PCNA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCNA MUTATED        1      0      0      0
  PCNA WILD-TYPE     53     10     24     22
D1669V12, multiclass
[1] "Remove cluster labels:" "PCNA MUTATED"          
clus
  PCNA MUTATED PCNA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" "PCNA WILD-TYPE" 
    TCGA-G5-6641 
"PCNA WILD-TYPE" 

Clustering(1670) Variable = ABCB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        1      1      0      2
  ABCB6 WILD-TYPE     45     57     64     41
D1670V1, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        2      1      1
  ABCB6 WILD-TYPE     49     82     76
D1670V2, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        5      1      1      1
  ABCB6 WILD-TYPE    173    182    100     19
D1670V3, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        4      0      0
  ABCB6 WILD-TYPE     83     80    100
D1670V4, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        0      2      5
  ABCB6 WILD-TYPE     89    158    133
D1670V5, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        4      2      1
  ABCB6 WILD-TYPE    178    131     71
D1670V6, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        1      1      2      4
  ABCB6 WILD-TYPE    111     95     90    182
D1670V7, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCB6 MUTATED        2      0      2      1      0      0      3
  ABCB6 WILD-TYPE     58     50     47     39     63    125     96
D1670V8, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        2      1      0      4
  ABCB6 WILD-TYPE    128     77     68    192
D1670V9, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABCB6 MUTATED        1      2      0      1      1      0      1      1
  ABCB6 WILD-TYPE     39     60     28     79     68     48     42     27
                 vv
clus              CLUS_9
  ABCB6 MUTATED        0
  ABCB6 WILD-TYPE     74
D1670V10, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        0      1      0      1
  ABCB6 WILD-TYPE     33     30     27     18
D1670V11, multiclass
[1] "Remove cluster labels:" "ABCB6 MUTATED"         
clus
  ABCB6 MUTATED ABCB6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6603 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        2      0      0      0
  ABCB6 WILD-TYPE     52     10     24     22
D1670V12, multiclass
[1] "Remove cluster labels:" "ABCB6 MUTATED"         
clus
  ABCB6 MUTATED ABCB6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6603 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" "ABCB6 WILD-TYPE" 

Clustering(1671) Variable = GGNBP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGNBP2 MUTATED        0      1      0      3
  GGNBP2 WILD-TYPE     46     57     64     40
D1671V1, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGNBP2 MUTATED        1      2      1
  GGNBP2 WILD-TYPE     50     81     76
D1671V2, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGNBP2 MUTATED        8      3      2      0
  GGNBP2 WILD-TYPE    170    180     99     20
D1671V3, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGNBP2 MUTATED        3      1      5
  GGNBP2 WILD-TYPE     84     79     95
D1671V4, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGNBP2 MUTATED        1      5      6
  GGNBP2 WILD-TYPE     88    155    132
D1671V5, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GGNBP2 MUTATED        7      5      0
  GGNBP2 WILD-TYPE    175    128     72
D1671V6, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              5              128
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGNBP2 MUTATED        1      2      6      4
  GGNBP2 WILD-TYPE    111     94     86    182
D1671V7, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              6               86
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GGNBP2 MUTATED        4      1      4      0      1      1      2
  GGNBP2 WILD-TYPE     56     49     45     40     62    124     97
D1671V8, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGNBP2 MUTATED        6      0      2      4
  GGNBP2 WILD-TYPE    124     78     66    192
D1671V9, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GGNBP2 MUTATED        1      1      2      2      3      0      2      0
  GGNBP2 WILD-TYPE     39     61     26     78     66     48     41     28
                  vv
clus               CLUS_9
  GGNBP2 MUTATED        1
  GGNBP2 WILD-TYPE     73
D1671V10, multiclass
        clus
vv       GGNBP2 MUTATED GGNBP2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGNBP2 MUTATED        1      0      0      1
  GGNBP2 WILD-TYPE     32     31     27     18
D1671V11, multiclass
[1] "Remove cluster labels:" "GGNBP2 MUTATED"        
clus
  GGNBP2 MUTATED GGNBP2 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GGNBP2 MUTATED        2      0      0      0
  GGNBP2 WILD-TYPE     52     10     24     22
D1671V12, multiclass
[1] "Remove cluster labels:" "GGNBP2 MUTATED"        
clus
  GGNBP2 MUTATED GGNBP2 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" "GGNBP2 WILD-TYPE" 

Clustering(1672) Variable = CCDC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC3 MUTATED        0      0      0      1
  CCDC3 WILD-TYPE     46     58     64     42
D1672V1, multiclass
[1] "Remove cluster labels:" "CCDC3 MUTATED"         
clus
  CCDC3 MUTATED CCDC3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC3 MUTATED        0      0      1
  CCDC3 WILD-TYPE     51     83     76
D1672V2, multiclass
[1] "Remove cluster labels:" "CCDC3 MUTATED"         
clus
  CCDC3 MUTATED CCDC3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC3 MUTATED        4      0      1      0
  CCDC3 WILD-TYPE    174    183    100     20
D1672V3, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC3 MUTATED        1      2      1
  CCDC3 WILD-TYPE     86     78     99
D1672V4, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC3 MUTATED        1      2      2
  CCDC3 WILD-TYPE     88    158    136
D1672V5, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC3 MUTATED        2      2      1
  CCDC3 WILD-TYPE    180    131     71
D1672V6, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC3 MUTATED        3      1      0      1
  CCDC3 WILD-TYPE    109     95     92    185
D1672V7, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC3 MUTATED        4      0      0      1      0      0      0
  CCDC3 WILD-TYPE     56     50     49     39     63    125     99
D1672V8, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             0              50
  CLUS_3             0              49
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC3 MUTATED        3      0      1      1
  CCDC3 WILD-TYPE    127     78     67    195
D1672V9, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC3 MUTATED        2      0      0      1      1      0      1      0
  CCDC3 WILD-TYPE     38     62     28     79     68     48     42     28
                 vv
clus              CLUS_9
  CCDC3 MUTATED        0
  CCDC3 WILD-TYPE     74
D1672V10, multiclass
        clus
vv       CCDC3 MUTATED CCDC3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC3 MUTATED        1      0      0      0
  CCDC3 WILD-TYPE     32     31     27     19
D1672V11, multiclass
[1] "Remove cluster labels:" "CCDC3 MUTATED"         
clus
  CCDC3 MUTATED CCDC3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6679      TCGA-CM-6680 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-G5-6641 
"CCDC3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC3 MUTATED        1      0      0      0
  CCDC3 WILD-TYPE     53     10     24     22
D1672V12, multiclass
[1] "Remove cluster labels:" "CCDC3 MUTATED"         
clus
  CCDC3 MUTATED CCDC3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6679      TCGA-CM-6680 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" "CCDC3 WILD-TYPE" 
     TCGA-G5-6641 
"CCDC3 WILD-TYPE" 

Clustering(1673) Variable = TATDN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        2      1      0      4
  TATDN2 WILD-TYPE     44     57     64     39
D1673V1, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN2 MUTATED        4      2      1
  TATDN2 WILD-TYPE     47     81     76
D1673V2, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        9      0      2      1
  TATDN2 WILD-TYPE    169    183     99     19
D1673V3, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN2 MUTATED        1      1      3
  TATDN2 WILD-TYPE     86     79     97
D1673V4, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN2 MUTATED        2      4      5
  TATDN2 WILD-TYPE     87    156    133
D1673V5, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN2 MUTATED        6      4      1
  TATDN2 WILD-TYPE    176    129     71
D1673V6, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        1      3      1      7
  TATDN2 WILD-TYPE    111     93     91    179
D1673V7, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TATDN2 MUTATED        1      0      3      0      1      1      6
  TATDN2 WILD-TYPE     59     50     46     40     62    124     93
D1673V8, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        1      1      1      8
  TATDN2 WILD-TYPE    129     77     67    188
D1673V9, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TATDN2 MUTATED        1      1      1      0      6      0      1      0
  TATDN2 WILD-TYPE     39     61     27     80     63     48     42     28
                  vv
clus               CLUS_9
  TATDN2 MUTATED        1
  TATDN2 WILD-TYPE     73
D1673V10, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        2      0      0      1
  TATDN2 WILD-TYPE     31     31     27     18
D1673V11, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN2 MUTATED        1      0      1      1
  TATDN2 WILD-TYPE     53     10     23     21
D1673V12, multiclass
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1674) Variable = USP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        0      0      0      0
  USP1 WILD-TYPE     46     58     64     43
D1674V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP1 MUTATED        0      0      0
  USP1 WILD-TYPE     51     83     77
D1674V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        8      0      0      1
  USP1 WILD-TYPE    170    183    101     19
D1674V3, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP1 MUTATED        6      0      3
  USP1 WILD-TYPE     81     80     97
D1674V4, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP1 MUTATED        2      2      5
  USP1 WILD-TYPE     87    158    133
D1674V5, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP1 MUTATED        6      3      0
  USP1 WILD-TYPE    176    130     72
D1674V6, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        0      2      6      1
  USP1 WILD-TYPE    112     94     86    185
D1674V7, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            6             86
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP1 MUTATED        0      1      6      0      1      0      1
  USP1 WILD-TYPE     60     49     43     40     62    125     98
D1674V8, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        5      2      0      2
  USP1 WILD-TYPE    125     76     68    194
D1674V9, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  USP1 MUTATED        2      4      0      0      2      0      0      0      1
  USP1 WILD-TYPE     38     58     28     80     67     48     43     28     73
D1674V10, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        1      0      0      2
  USP1 WILD-TYPE     32     31     27     17
D1674V11, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        3      0      0      0
  USP1 WILD-TYPE     51     10     24     22
D1674V12, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1675) Variable = IFLTD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFLTD1 MUTATED        2      0      1      1
  IFLTD1 WILD-TYPE     44     58     63     42
D1675V1, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFLTD1 MUTATED        3      0      1
  IFLTD1 WILD-TYPE     48     83     76
D1675V2, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFLTD1 MUTATED        8      3      1      0
  IFLTD1 WILD-TYPE    170    180    100     20
D1675V3, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFLTD1 MUTATED        2      3      4
  IFLTD1 WILD-TYPE     85     77     96
D1675V4, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFLTD1 MUTATED        3      4      4
  IFLTD1 WILD-TYPE     86    156    134
D1675V5, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFLTD1 MUTATED        6      3      2
  IFLTD1 WILD-TYPE    176    130     70
D1675V6, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFLTD1 MUTATED        2      4      2      5
  IFLTD1 WILD-TYPE    110     92     90    181
D1675V7, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFLTD1 MUTATED        1      2      3      0      2      2      3
  IFLTD1 WILD-TYPE     59     48     46     40     61    123     96
D1675V8, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFLTD1 MUTATED        7      1      0      5
  IFLTD1 WILD-TYPE    123     77     68    191
D1675V9, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFLTD1 MUTATED        3      2      1      2      4      0      1      0
  IFLTD1 WILD-TYPE     37     60     27     78     65     48     42     28
                  vv
clus               CLUS_9
  IFLTD1 MUTATED        0
  IFLTD1 WILD-TYPE     74
D1675V10, multiclass
        clus
vv       IFLTD1 MUTATED IFLTD1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFLTD1 MUTATED        0      0      0      0
  IFLTD1 WILD-TYPE     33     31     27     19
D1675V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFLTD1 MUTATED        0      0      0      0
  IFLTD1 WILD-TYPE     54     10     24     22
D1675V12, multiclass

Clustering(1676) Variable = TLX1NB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLX1NB MUTATED        0      1      0      0
  TLX1NB WILD-TYPE     46     57     64     43
D1676V1, multiclass
[1] "Remove cluster labels:" "TLX1NB MUTATED"        
clus
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TLX1NB MUTATED        0      1      0
  TLX1NB WILD-TYPE     51     82     77
D1676V2, multiclass
[1] "Remove cluster labels:" "TLX1NB MUTATED"        
clus
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLX1NB MUTATED        1      1      1      0
  TLX1NB WILD-TYPE    177    182    100     20
D1676V3, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              1              177
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TLX1NB MUTATED        1      0      0
  TLX1NB WILD-TYPE     86     80    100
D1676V4, multiclass
[1] "Remove cluster labels:" "TLX1NB MUTATED"        
clus
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               1              266 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-2693       TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-4681       TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CK-4948       TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CK-5913       TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CK-6746       TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CL-5917       TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6929       TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-7000       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XD 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4       TCGA-DM-A1D6 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB       TCGA-DM-A282 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A285       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DM-A28H       TCGA-DM-A28K       TCGA-DT-5265 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DY-A0XA       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-EI-6507       TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6856       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G4-6317       TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G4-6588       TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G5-6235       TCGA-G5-6641 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TLX1NB MUTATED        1      0      2
  TLX1NB WILD-TYPE     88    160    136
D1676V5, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TLX1NB MUTATED        2      1      0
  TLX1NB WILD-TYPE    180    132     72
D1676V6, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLX1NB MUTATED        0      0      1      2
  TLX1NB WILD-TYPE    112     96     91    184
D1676V7, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              0              112
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TLX1NB MUTATED        0      0      0      0      1      1      1
  TLX1NB WILD-TYPE     60     50     49     40     62    124     98
D1676V8, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLX1NB MUTATED        0      1      0      2
  TLX1NB WILD-TYPE    130     77     68    194
D1676V9, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TLX1NB MUTATED        0      1      0      0      1      0      0      1
  TLX1NB WILD-TYPE     40     61     28     80     68     48     43     27
                  vv
clus               CLUS_9
  TLX1NB MUTATED        0
  TLX1NB WILD-TYPE     74
D1676V10, multiclass
        clus
vv       TLX1NB MUTATED TLX1NB WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLX1NB MUTATED        0      1      0      0
  TLX1NB WILD-TYPE     33     30     27     19
D1676V11, multiclass
[1] "Remove cluster labels:" "TLX1NB MUTATED"        
clus
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G5-6641 
"TLX1NB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLX1NB MUTATED        1      0      0      0
  TLX1NB WILD-TYPE     53     10     24     22
D1676V12, multiclass
[1] "Remove cluster labels:" "TLX1NB MUTATED"        
clus
  TLX1NB MUTATED TLX1NB WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" "TLX1NB WILD-TYPE" 
      TCGA-G5-6641 
"TLX1NB WILD-TYPE" 

Clustering(1677) Variable = ZNF323 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF323 MUTATED        1      0      0      1
  ZNF323 WILD-TYPE     45     58     64     42
D1677V1, multiclass
[1] "Remove cluster labels:" "ZNF323 MUTATED"        
clus
  ZNF323 MUTATED ZNF323 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF323 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF323 MUTATED        1      1      0
  ZNF323 WILD-TYPE     50     82     77
D1677V2, multiclass
[1] "Remove cluster labels:" "ZNF323 MUTATED"        
clus
  ZNF323 MUTATED ZNF323 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" "ZNF323 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF323 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF323 MUTATED        6      2      3      0
  ZNF323 WILD-TYPE    172    181     98     20
D1677V3, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF323 MUTATED        2      2      5
  ZNF323 WILD-TYPE     85     78     95
D1677V4, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF323 MUTATED        1      5      3
  ZNF323 WILD-TYPE     88    155    135
D1677V5, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF323 MUTATED        4      4      1
  ZNF323 WILD-TYPE    178    129     71
D1677V6, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF323 MUTATED        2      4      2      3
  ZNF323 WILD-TYPE    110     92     90    183
D1677V7, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF323 MUTATED        1      2      4      0      1      0      3
  ZNF323 WILD-TYPE     59     48     45     40     62    125     96
D1677V8, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF323 MUTATED        5      1      1      4
  ZNF323 WILD-TYPE    125     77     67    192
D1677V9, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF323 MUTATED        0      1      2      2      2      1      2      0
  ZNF323 WILD-TYPE     40     61     26     78     67     47     41     28
                  vv
clus               CLUS_9
  ZNF323 MUTATED        1
  ZNF323 WILD-TYPE     73
D1677V10, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF323 MUTATED        0      0      1      3
  ZNF323 WILD-TYPE     33     31     26     16
D1677V11, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF323 MUTATED        2      0      1      1
  ZNF323 WILD-TYPE     52     10     23     21
D1677V12, multiclass
        clus
vv       ZNF323 MUTATED ZNF323 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1678) Variable = ANAPC16 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC16 MUTATED        0      0      0      1
  ANAPC16 WILD-TYPE     46     58     64     42
D1678V1, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANAPC16 MUTATED        0      0      1
  ANAPC16 WILD-TYPE     51     83     76
D1678V2, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC16 MUTATED        1      2      0      0
  ANAPC16 WILD-TYPE    177    181    101     20
D1678V3, multiclass
        clus
vv       ANAPC16 MUTATED ANAPC16 WILD-TYPE
  CLUS_1               1               177
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANAPC16 MUTATED        2      0      0
  ANAPC16 WILD-TYPE     85     80    100
D1678V4, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                2               265 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-2693        TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4681 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407        TCGA-AZ-6598 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6622 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948        TCGA-CK-4950 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913        TCGA-CK-5914 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917        TCGA-CL-5918 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-5538 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541        TCGA-D5-6529 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6535 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538        TCGA-D5-6539 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898        TCGA-D5-6920 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924        TCGA-D5-6926 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929        TCGA-D5-6930 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000        TCGA-DC-5337 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28C 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G        TCGA-DM-A28H 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G5-6641 
"ANAPC16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANAPC16 MUTATED        1      1      1
  ANAPC16 WILD-TYPE     88    159    137
D1678V5, multiclass
        clus
vv       ANAPC16 MUTATED ANAPC16 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANAPC16 MUTATED        2      1      0
  ANAPC16 WILD-TYPE    180    132     72
D1678V6, multiclass
        clus
vv       ANAPC16 MUTATED ANAPC16 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC16 MUTATED        0      1      1      1
  ANAPC16 WILD-TYPE    112     95     91    185
D1678V7, multiclass
        clus
vv       ANAPC16 MUTATED ANAPC16 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANAPC16 MUTATED        0      1      0      1      0      1      0
  ANAPC16 WILD-TYPE     60     49     49     39     63    124     99
D1678V8, multiclass
        clus
vv       ANAPC16 MUTATED ANAPC16 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               0                49
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC16 MUTATED        1      1      0      0
  ANAPC16 WILD-TYPE    129     77     68    196
D1678V9, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                2               470 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-4105 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659        TCGA-A6-5660 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664        TCGA-A6-5665 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649        TCGA-A6-6651 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654        TCGA-A6-6780 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3492 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510        TCGA-AA-3511 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517        TCGA-AA-3518 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526        TCGA-AA-3527 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542        TCGA-AA-3543 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549        TCGA-AA-3552 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3556 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662        TCGA-AA-3663 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667        TCGA-AA-3672 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679        TCGA-AA-3680 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685        TCGA-AA-3688 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3695        TCGA-AA-3696 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3697        TCGA-AA-3710        TCGA-AA-3712        TCGA-AA-3713 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A00D        TCGA-AA-A00J        TCGA-AA-A00L 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00U        TCGA-AA-A00W 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A022 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02Y 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6888        TCGA-AD-6889        TCGA-AD-6890        TCGA-AD-6895 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6899        TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-2689        TCGA-AF-2691 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
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"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
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"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
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"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
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"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
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"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779        TCGA-AU-6004 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AY-6196        TCGA-AY-6197 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
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"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-4681        TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANAPC16 MUTATED        0      1      0      0      0      0      1      0
  ANAPC16 WILD-TYPE     40     61     28     80     69     48     42     28
                   vv
clus                CLUS_9
  ANAPC16 MUTATED        0
  ANAPC16 WILD-TYPE     74
D1678V10, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                2               470 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-4105 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659        TCGA-A6-5660 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664        TCGA-A6-5665 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649        TCGA-A6-6651 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654        TCGA-A6-6780 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3492 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510        TCGA-AA-3511 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517        TCGA-AA-3518 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526        TCGA-AA-3527 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542        TCGA-AA-3543 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549        TCGA-AA-3552 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3556 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662        TCGA-AA-3663 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667        TCGA-AA-3672 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679        TCGA-AA-3680 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685        TCGA-AA-3688 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3695        TCGA-AA-3696 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3697        TCGA-AA-3710        TCGA-AA-3712        TCGA-AA-3713 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A00D        TCGA-AA-A00J        TCGA-AA-A00L 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00U        TCGA-AA-A00W 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A022 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02Y 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6888        TCGA-AD-6889        TCGA-AD-6890        TCGA-AD-6895 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6899        TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-2689        TCGA-AF-2691 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-2693        TCGA-AF-3400        TCGA-AF-3913 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779        TCGA-AU-6004 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AY-6196        TCGA-AY-6197 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-4681        TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC16 MUTATED        1      0      0      0
  ANAPC16 WILD-TYPE     32     31     27     19
D1678V11, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6607        TCGA-CA-6718 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G5-6641 
"ANAPC16 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC16 MUTATED        1      0      0      0
  ANAPC16 WILD-TYPE     53     10     24     22
D1678V12, multiclass
[1] "Remove cluster labels:" "ANAPC16 MUTATED"       
clus
  ANAPC16 MUTATED ANAPC16 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6607        TCGA-CA-6718 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" "ANAPC16 WILD-TYPE" 
       TCGA-G5-6641 
"ANAPC16 WILD-TYPE" 

Clustering(1679) Variable = AKAP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP7 MUTATED        0      0      0      1
  AKAP7 WILD-TYPE     46     58     64     42
D1679V1, multiclass
[1] "Remove cluster labels:" "AKAP7 MUTATED"         
clus
  AKAP7 MUTATED AKAP7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP7 MUTATED        0      1      0
  AKAP7 WILD-TYPE     51     82     77
D1679V2, multiclass
[1] "Remove cluster labels:" "AKAP7 MUTATED"         
clus
  AKAP7 MUTATED AKAP7 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP7 MUTATED        3      1      2      0
  AKAP7 WILD-TYPE    175    182     99     20
D1679V3, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP7 MUTATED        2      1      2
  AKAP7 WILD-TYPE     85     79     98
D1679V4, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP7 MUTATED        1      2      2
  AKAP7 WILD-TYPE     88    158    136
D1679V5, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP7 MUTATED        3      2      0
  AKAP7 WILD-TYPE    179    131     72
D1679V6, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP7 MUTATED        0      1      2      3
  AKAP7 WILD-TYPE    112     95     90    183
D1679V7, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKAP7 MUTATED        1      0      2      0      0      2      1
  AKAP7 WILD-TYPE     59     50     47     40     63    123     98
D1679V8, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP7 MUTATED        3      1      0      2
  AKAP7 WILD-TYPE    127     77     68    194
D1679V9, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AKAP7 MUTATED        1      1      1      2      0      0      0      1
  AKAP7 WILD-TYPE     39     61     27     78     69     48     43     27
                 vv
clus              CLUS_9
  AKAP7 MUTATED        0
  AKAP7 WILD-TYPE     74
D1679V10, multiclass
        clus
vv       AKAP7 MUTATED AKAP7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP7 MUTATED        0      0      0      1
  AKAP7 WILD-TYPE     33     31     27     18
D1679V11, multiclass
[1] "Remove cluster labels:" "AKAP7 MUTATED"         
clus
  AKAP7 MUTATED AKAP7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-G5-6641 
"AKAP7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP7 MUTATED        1      0      0      0
  AKAP7 WILD-TYPE     53     10     24     22
D1679V12, multiclass
[1] "Remove cluster labels:" "AKAP7 MUTATED"         
clus
  AKAP7 MUTATED AKAP7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" "AKAP7 WILD-TYPE" 
     TCGA-G5-6641 
"AKAP7 WILD-TYPE" 

Clustering(1680) Variable = MUM1L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUM1L1 MUTATED        3      0      1      1
  MUM1L1 WILD-TYPE     43     58     63     42
D1680V1, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MUM1L1 MUTATED        2      2      1
  MUM1L1 WILD-TYPE     49     81     76
D1680V2, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUM1L1 MUTATED        7      7      1      0
  MUM1L1 WILD-TYPE    171    176    100     20
D1680V3, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              7              176
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MUM1L1 MUTATED        2      7      2
  MUM1L1 WILD-TYPE     85     73     98
D1680V4, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              7               73
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MUM1L1 MUTATED        0      6      6
  MUM1L1 WILD-TYPE     89    154    132
D1680V5, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MUM1L1 MUTATED        5      6      1
  MUM1L1 WILD-TYPE    177    127     71
D1680V6, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUM1L1 MUTATED        7      0      3      6
  MUM1L1 WILD-TYPE    105     96     89    180
D1680V7, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              7              105
  CLUS_2              0               96
  CLUS_3              3               89
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUM1L1 MUTATED        6      2      1      0      2      2      3
  MUM1L1 WILD-TYPE     54     48     48     40     61    123     96
D1680V8, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              6               54
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUM1L1 MUTATED        4      2      3      7
  MUM1L1 WILD-TYPE    126     76     65    189
D1680V9, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              3               65
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MUM1L1 MUTATED        2      2      0      2      5      1      3      0
  MUM1L1 WILD-TYPE     38     60     28     78     64     47     40     28
                  vv
clus               CLUS_9
  MUM1L1 MUTATED        1
  MUM1L1 WILD-TYPE     73
D1680V10, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUM1L1 MUTATED        1      1      1      1
  MUM1L1 WILD-TYPE     32     30     26     18
D1680V11, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUM1L1 MUTATED        1      1      1      1
  MUM1L1 WILD-TYPE     53      9     23     21
D1680V12, multiclass
        clus
vv       MUM1L1 MUTATED MUM1L1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1681) Variable = ISOC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISOC2 MUTATED        0      0      0      0
  ISOC2 WILD-TYPE     46     58     64     43
D1681V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ISOC2 MUTATED        0      0      0
  ISOC2 WILD-TYPE     51     83     77
D1681V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISOC2 MUTATED        2      1      1      1
  ISOC2 WILD-TYPE    176    182    100     19
D1681V3, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ISOC2 MUTATED        2      1      2
  ISOC2 WILD-TYPE     85     79     98
D1681V4, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ISOC2 MUTATED        1      3      1
  ISOC2 WILD-TYPE     88    157    137
D1681V5, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ISOC2 MUTATED        2      3      0
  ISOC2 WILD-TYPE    180    130     72
D1681V6, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISOC2 MUTATED        0      2      3      0
  ISOC2 WILD-TYPE    112     94     89    186
D1681V7, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ISOC2 MUTATED        0      0      2      1      2      0      0
  ISOC2 WILD-TYPE     60     50     47     39     61    125     99
D1681V8, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISOC2 MUTATED        4      1      0      0
  ISOC2 WILD-TYPE    126     77     68    196
D1681V9, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ISOC2 MUTATED        3      1      0      0      1      0      0      0
  ISOC2 WILD-TYPE     37     61     28     80     68     48     43     28
                 vv
clus              CLUS_9
  ISOC2 MUTATED        0
  ISOC2 WILD-TYPE     74
D1681V10, multiclass
        clus
vv       ISOC2 MUTATED ISOC2 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISOC2 MUTATED        0      1      0      1
  ISOC2 WILD-TYPE     33     30     27     18
D1681V11, multiclass
[1] "Remove cluster labels:" "ISOC2 MUTATED"         
clus
  ISOC2 MUTATED ISOC2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISOC2 MUTATED        2      0      0      0
  ISOC2 WILD-TYPE     52     10     24     22
D1681V12, multiclass
[1] "Remove cluster labels:" "ISOC2 MUTATED"         
clus
  ISOC2 MUTATED ISOC2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" "ISOC2 WILD-TYPE" 

Clustering(1682) Variable = GLTSCR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR1 MUTATED        2      1      0      0
  GLTSCR1 WILD-TYPE     44     57     64     43
D1682V1, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               0                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLTSCR1 MUTATED        2      1      0
  GLTSCR1 WILD-TYPE     49     82     77
D1682V2, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR1 MUTATED        8      3      1      0
  GLTSCR1 WILD-TYPE    170    180    100     20
D1682V3, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLTSCR1 MUTATED        2      1      7
  GLTSCR1 WILD-TYPE     85     79     93
D1682V4, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLTSCR1 MUTATED        0      3      7
  GLTSCR1 WILD-TYPE     89    157    131
D1682V5, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLTSCR1 MUTATED        7      3      0
  GLTSCR1 WILD-TYPE    175    130     72
D1682V6, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR1 MUTATED        1      3      7      1
  GLTSCR1 WILD-TYPE    111     93     85    185
D1682V7, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               7                85
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLTSCR1 MUTATED        2      1      5      1      0      1      2
  GLTSCR1 WILD-TYPE     58     49     44     39     63    124     97
D1682V8, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR1 MUTATED        7      2      1      2
  GLTSCR1 WILD-TYPE    123     76     67    194
D1682V9, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GLTSCR1 MUTATED        1      2      0      3      4      0      0      1
  GLTSCR1 WILD-TYPE     39     60     28     77     65     48     43     27
                   vv
clus                CLUS_9
  GLTSCR1 MUTATED        1
  GLTSCR1 WILD-TYPE     73
D1682V10, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               3                77
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR1 MUTATED        0      0      0      4
  GLTSCR1 WILD-TYPE     33     31     27     15
D1682V11, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR1 MUTATED        2      0      2      0
  GLTSCR1 WILD-TYPE     52     10     22     22
D1682V12, multiclass
        clus
vv       GLTSCR1 MUTATED GLTSCR1 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1683) Variable = DNAJB11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB11 MUTATED        1      0      0      1
  DNAJB11 WILD-TYPE     45     58     64     42
D1683V1, multiclass
[1] "Remove cluster labels:" "DNAJB11 MUTATED"       
clus
  DNAJB11 MUTATED DNAJB11 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AY-4071 
"DNAJB11 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJB11 MUTATED        2      0      0
  DNAJB11 WILD-TYPE     49     83     77
D1683V2, multiclass
[1] "Remove cluster labels:" "DNAJB11 MUTATED"       
clus
  DNAJB11 MUTATED DNAJB11 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" "DNAJB11 WILD-TYPE" 
       TCGA-AY-4071 
"DNAJB11 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB11 MUTATED        5      2      2      0
  DNAJB11 WILD-TYPE    173    181     99     20
D1683V3, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJB11 MUTATED        1      3      3
  DNAJB11 WILD-TYPE     86     77     97
D1683V4, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               3                77
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJB11 MUTATED        1      2      5
  DNAJB11 WILD-TYPE     88    158    133
D1683V5, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJB11 MUTATED        6      2      0
  DNAJB11 WILD-TYPE    176    131     72
D1683V6, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB11 MUTATED        2      3      2      2
  DNAJB11 WILD-TYPE    110     93     90    184
D1683V7, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DNAJB11 MUTATED        1      1      3      0      2      0      2
  DNAJB11 WILD-TYPE     59     49     46     40     61    125     97
D1683V8, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB11 MUTATED        4      2      1      1
  DNAJB11 WILD-TYPE    126     76     67    195
D1683V9, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DNAJB11 MUTATED        0      3      0      1      3      0      1      0
  DNAJB11 WILD-TYPE     40     59     28     79     66     48     42     28
                   vv
clus                CLUS_9
  DNAJB11 MUTATED        0
  DNAJB11 WILD-TYPE     74
D1683V10, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB11 MUTATED        0      0      1      2
  DNAJB11 WILD-TYPE     33     31     26     17
D1683V11, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB11 MUTATED        1      0      2      0
  DNAJB11 WILD-TYPE     53     10     22     22
D1683V12, multiclass
        clus
vv       DNAJB11 MUTATED DNAJB11 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1684) Variable = LEPROTL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPROTL1 MUTATED        0      0      0      2
  LEPROTL1 WILD-TYPE     46     58     64     41
D1684V1, multiclass
[1] "Remove cluster labels:" "LEPROTL1 MUTATED"      
clus
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3866 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00K 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  LEPROTL1 MUTATED        2      0      0
  LEPROTL1 WILD-TYPE     49     83     77
D1684V2, multiclass
[1] "Remove cluster labels:" "LEPROTL1 MUTATED"      
clus
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3866 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00K 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPROTL1 MUTATED        5      0      0      0
  LEPROTL1 WILD-TYPE    173    183    101     20
D1684V3, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                5                173
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  LEPROTL1 MUTATED        2      0      0
  LEPROTL1 WILD-TYPE     85     80    100
D1684V4, multiclass
[1] "Remove cluster labels:" "LEPROTL1 MUTATED"      
clus
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 2                265 
        TCGA-A6-2671         TCGA-A6-2677         TCGA-A6-3809 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-4105         TCGA-A6-5656 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-5657         TCGA-A6-5659         TCGA-A6-5660 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-5661         TCGA-A6-5662         TCGA-A6-5664 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-5665         TCGA-A6-5666         TCGA-A6-6137 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6138         TCGA-A6-6141         TCGA-A6-6142 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6648         TCGA-A6-6649         TCGA-A6-6651 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6652         TCGA-A6-6653         TCGA-A6-6654 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6780         TCGA-A6-6781         TCGA-A6-6782 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3492         TCGA-AA-3496 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3502         TCGA-AA-3510         TCGA-AA-3511 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3655         TCGA-AA-3660         TCGA-AA-3662 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3663         TCGA-AA-3697         TCGA-AA-3712 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AD-5900         TCGA-AD-6548 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6888         TCGA-AD-6889         TCGA-AD-6890 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6895         TCGA-AD-6899         TCGA-AD-6901 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-2693         TCGA-AF-4110 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02N         TCGA-AG-A036 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-3779 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4681 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-4682         TCGA-AZ-5403         TCGA-AZ-5407 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6599         TCGA-AZ-6600 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6606         TCGA-AZ-6607         TCGA-AZ-6608 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CA-5254         TCGA-CA-5255         TCGA-CA-5796 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CA-5797         TCGA-CA-6715         TCGA-CA-6716 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CA-6717         TCGA-CA-6718         TCGA-CA-6719 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6624         TCGA-CK-4947 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CK-4948         TCGA-CK-4950         TCGA-CK-4952 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CK-5912         TCGA-CK-5913         TCGA-CK-5914 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CK-5915         TCGA-CK-5916         TCGA-CK-6746 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CK-6747         TCGA-CK-6748         TCGA-CK-6751 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CL-5917         TCGA-CL-5918         TCGA-CM-4743 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-4744         TCGA-CM-4746         TCGA-CM-4747 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-4752         TCGA-CM-5341         TCGA-CM-5344 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-5348         TCGA-CM-5349         TCGA-CM-5860 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-5861         TCGA-CM-5862         TCGA-CM-5863 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-5864         TCGA-CM-5868         TCGA-CM-6161 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6162         TCGA-CM-6163         TCGA-CM-6164 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6165         TCGA-CM-6166         TCGA-CM-6167 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6168         TCGA-CM-6169         TCGA-CM-6170 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6171         TCGA-CM-6172         TCGA-CM-6675 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-5538         TCGA-D5-5539         TCGA-D5-5540 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-5541         TCGA-D5-6529         TCGA-D5-6532 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6535 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6537         TCGA-D5-6538 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6539         TCGA-D5-6540         TCGA-D5-6541 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6898         TCGA-D5-6920         TCGA-D5-6922 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6923         TCGA-D5-6924         TCGA-D5-6926 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6927         TCGA-D5-6928         TCGA-D5-6929 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6931         TCGA-D5-6932         TCGA-D5-7000 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A0X9         TCGA-DM-A0XD         TCGA-DM-A0XF 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A285 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A28C         TCGA-DM-A28E         TCGA-DM-A28F 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A28G         TCGA-DM-A28H         TCGA-DM-A28K 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G5-6641 
"LEPROTL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  LEPROTL1 MUTATED        3      0      2
  LEPROTL1 WILD-TYPE     86    160    136
D1684V5, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                0                160
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  LEPROTL1 MUTATED        3      1      1
  LEPROTL1 WILD-TYPE    179    132     71
D1684V6, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                1                132
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPROTL1 MUTATED        0      0      3      2
  LEPROTL1 WILD-TYPE    112     96     89    184
D1684V7, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                0                 96
  CLUS_3                3                 89
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LEPROTL1 MUTATED        0      0      3      0      0      0      2
  LEPROTL1 WILD-TYPE     60     50     46     40     63    125     97
D1684V8, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPROTL1 MUTATED        0      2      0      3
  LEPROTL1 WILD-TYPE    130     76     68    193
D1684V9, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                0                130
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LEPROTL1 MUTATED        0      2      0      0      2      0      0      1
  LEPROTL1 WILD-TYPE     40     60     28     80     67     48     43     27
                    vv
clus                 CLUS_9
  LEPROTL1 MUTATED        0
  LEPROTL1 WILD-TYPE     74
D1684V10, multiclass
        clus
vv       LEPROTL1 MUTATED LEPROTL1 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPROTL1 MUTATED        1      0      0      0
  LEPROTL1 WILD-TYPE     32     31     27     19
D1684V11, multiclass
[1] "Remove cluster labels:" "LEPROTL1 MUTATED"      
clus
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G5-6641 
"LEPROTL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEPROTL1 MUTATED        1      0      0      0
  LEPROTL1 WILD-TYPE     53     10     24     22
D1684V12, multiclass
[1] "Remove cluster labels:" "LEPROTL1 MUTATED"      
clus
  LEPROTL1 MUTATED LEPROTL1 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" "LEPROTL1 WILD-TYPE" 
        TCGA-G5-6641 
"LEPROTL1 WILD-TYPE" 

Clustering(1685) Variable = OR9Q1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q1 MUTATED        0      0      0      0
  OR9Q1 WILD-TYPE     46     58     64     43
D1685V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q1 MUTATED        0      0      0
  OR9Q1 WILD-TYPE     51     83     77
D1685V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q1 MUTATED        4      0      2      0
  OR9Q1 WILD-TYPE    174    183     99     20
D1685V3, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q1 MUTATED        1      1      4
  OR9Q1 WILD-TYPE     86     79     96
D1685V4, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q1 MUTATED        2      2      1
  OR9Q1 WILD-TYPE     87    158    137
D1685V5, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR9Q1 MUTATED        2      2      1
  OR9Q1 WILD-TYPE    180    131     71
D1685V6, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q1 MUTATED        1      3      2      0
  OR9Q1 WILD-TYPE    111     93     90    186
D1685V7, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR9Q1 MUTATED        1      0      4      1      0      0      0
  OR9Q1 WILD-TYPE     59     50     45     39     63    125     99
D1685V8, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q1 MUTATED        4      1      1      0
  OR9Q1 WILD-TYPE    126     77     67    196
D1685V9, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR9Q1 MUTATED        1      1      1      0      3      0      0      0
  OR9Q1 WILD-TYPE     39     61     27     80     66     48     43     28
                 vv
clus              CLUS_9
  OR9Q1 MUTATED        0
  OR9Q1 WILD-TYPE     74
D1685V10, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q1 MUTATED        1      0      0      2
  OR9Q1 WILD-TYPE     32     31     27     17
D1685V11, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR9Q1 MUTATED        2      0      1      0
  OR9Q1 WILD-TYPE     52     10     23     22
D1685V12, multiclass
        clus
vv       OR9Q1 MUTATED OR9Q1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1686) Variable = ARID4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4B MUTATED        1      1      0      2
  ARID4B WILD-TYPE     45     57     64     41
D1686V1, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID4B MUTATED        1      2      1
  ARID4B WILD-TYPE     50     81     76
D1686V2, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4B MUTATED        9      2      1      1
  ARID4B WILD-TYPE    169    181    100     19
D1686V3, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              9              169
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID4B MUTATED        4      0      5
  ARID4B WILD-TYPE     83     80     95
D1686V4, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID4B MUTATED        3      3      5
  ARID4B WILD-TYPE     86    157    133
D1686V5, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID4B MUTATED        7      1      3
  ARID4B WILD-TYPE    175    132     69
D1686V6, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              7              175
  CLUS_2              1              132
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4B MUTATED        1      2      6      4
  ARID4B WILD-TYPE    111     94     86    182
D1686V7, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              6               86
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARID4B MUTATED        4      0      4      1      1      2      1
  ARID4B WILD-TYPE     56     50     45     39     62    123     98
D1686V8, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4B MUTATED        6      2      1      3
  ARID4B WILD-TYPE    124     76     67    193
D1686V9, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARID4B MUTATED        3      3      0      2      2      1      0      0
  ARID4B WILD-TYPE     37     59     28     78     67     47     43     28
                  vv
clus               CLUS_9
  ARID4B MUTATED        1
  ARID4B WILD-TYPE     73
D1686V10, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4B MUTATED        1      0      0      2
  ARID4B WILD-TYPE     32     31     27     17
D1686V11, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4B MUTATED        2      0      1      0
  ARID4B WILD-TYPE     52     10     23     22
D1686V12, multiclass
        clus
vv       ARID4B MUTATED ARID4B WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1687) Variable = ABHD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABHD2 MUTATED        1      0      0      3
  ABHD2 WILD-TYPE     45     58     64     40
D1687V1, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABHD2 MUTATED        3      0      1
  ABHD2 WILD-TYPE     48     83     76
D1687V2, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABHD2 MUTATED        8      3      1      0
  ABHD2 WILD-TYPE    170    180    100     20
D1687V3, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABHD2 MUTATED        2      2      4
  ABHD2 WILD-TYPE     85     78     96
D1687V4, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABHD2 MUTATED        1      5      2
  ABHD2 WILD-TYPE     88    155    136
D1687V5, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABHD2 MUTATED        3      4      1
  ABHD2 WILD-TYPE    179    129     71
D1687V6, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABHD2 MUTATED        4      2      2      4
  ABHD2 WILD-TYPE    108     94     90    182
D1687V7, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABHD2 MUTATED        3      0      3      1      1      0      4
  ABHD2 WILD-TYPE     57     50     46     39     62    125     95
D1687V8, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABHD2 MUTATED        5      1      1      4
  ABHD2 WILD-TYPE    125     77     67    192
D1687V9, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ABHD2 MUTATED        1      0      2      1      5      0      2      0
  ABHD2 WILD-TYPE     39     62     26     79     64     48     41     28
                 vv
clus              CLUS_9
  ABHD2 MUTATED        0
  ABHD2 WILD-TYPE     74
D1687V10, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABHD2 MUTATED        1      0      0      2
  ABHD2 WILD-TYPE     32     31     27     17
D1687V11, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABHD2 MUTATED        2      0      1      0
  ABHD2 WILD-TYPE     52     10     23     22
D1687V12, multiclass
        clus
vv       ABHD2 MUTATED ABHD2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1688) Variable = HIST1H1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      0      0      0
  HIST1H1B WILD-TYPE     45     58     64     43
D1688V1, multiclass
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 1                210 
        TCGA-A6-2674         TCGA-A6-2676         TCGA-A6-2677 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        1      0      0
  HIST1H1B WILD-TYPE     50     83     77
D1688V2, multiclass
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 1                210 
        TCGA-A6-2674         TCGA-A6-2676         TCGA-A6-2677 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        6      0      2      0
  HIST1H1B WILD-TYPE    172    183     99     20
D1688V3, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                6                172
  CLUS_2                0                183
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        3      2      2
  HIST1H1B WILD-TYPE     84     78     98
D1688V4, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                2                 78
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        0      2      4
  HIST1H1B WILD-TYPE     89    158    134
D1688V5, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        4      1      1
  HIST1H1B WILD-TYPE    178    132     71
D1688V6, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                4                178
  CLUS_2                1                132
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      2      4      1
  HIST1H1B WILD-TYPE    111     94     88    185
D1688V7, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                 94
  CLUS_3                4                 88
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H1B MUTATED        0      1      4      0      2      0      1
  HIST1H1B WILD-TYPE     60     49     45     40     61    125     98
D1688V8, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        4      3      0      1
  HIST1H1B WILD-TYPE    126     75     68    195
D1688V9, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                4                126
  CLUS_2                3                 75
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H1B MUTATED        2      3      0      2      1      0      0      0
  HIST1H1B WILD-TYPE     38     59     28     78     68     48     43     28
                    vv
clus                 CLUS_9
  HIST1H1B MUTATED        0
  HIST1H1B WILD-TYPE     74
D1688V10, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 59
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      0      0      0
  HIST1H1B WILD-TYPE     32     31     27     19
D1688V11, multiclass
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H1B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        1      0      0      0
  HIST1H1B WILD-TYPE     53     10     24     22
D1688V12, multiclass
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H1B WILD-TYPE" 

Clustering(1689) Variable = MAGOHB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGOHB MUTATED        0      0      0      1
  MAGOHB WILD-TYPE     46     58     64     42
D1689V1, multiclass
[1] "Remove cluster labels:" "MAGOHB MUTATED"        
clus
  MAGOHB MUTATED MAGOHB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGOHB MUTATED        0      0      1
  MAGOHB WILD-TYPE     51     83     76
D1689V2, multiclass
[1] "Remove cluster labels:" "MAGOHB MUTATED"        
clus
  MAGOHB MUTATED MAGOHB WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MAGOHB WILD-TYPE" "MAGOHB WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGOHB MUTATED        1      1      1      1
  MAGOHB WILD-TYPE    177    182    100     19
D1689V3, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              1              177
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGOHB MUTATED        3      0      0
  MAGOHB WILD-TYPE     84     80    100
D1689V4, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGOHB MUTATED        1      1      2
  MAGOHB WILD-TYPE     88    159    136
D1689V5, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGOHB MUTATED        3      1      0
  MAGOHB WILD-TYPE    179    132     72
D1689V6, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGOHB MUTATED        0      0      3      1
  MAGOHB WILD-TYPE    112     96     89    185
D1689V7, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              0              112
  CLUS_2              0               96
  CLUS_3              3               89
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGOHB MUTATED        1      0      2      1      0      0      0
  MAGOHB WILD-TYPE     59     50     47     39     63    125     99
D1689V8, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGOHB MUTATED        1      2      0      1
  MAGOHB WILD-TYPE    129     76     68    195
D1689V9, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAGOHB MUTATED        1      2      0      0      1      0      0      0
  MAGOHB WILD-TYPE     39     60     28     80     68     48     43     28
                  vv
clus               CLUS_9
  MAGOHB MUTATED        0
  MAGOHB WILD-TYPE     74
D1689V10, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGOHB MUTATED        2      1      0      0
  MAGOHB WILD-TYPE     31     30     27     19
D1689V11, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGOHB MUTATED        3      0      0      0
  MAGOHB WILD-TYPE     51     10     24     22
D1689V12, multiclass
        clus
vv       MAGOHB MUTATED MAGOHB WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1690) Variable = ATL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATL1 MUTATED        3      0      0      2
  ATL1 WILD-TYPE     43     58     64     41
D1690V1, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATL1 MUTATED        3      1      1
  ATL1 WILD-TYPE     48     82     76
D1690V2, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATL1 MUTATED       12      0      0      0
  ATL1 WILD-TYPE    166    183    101     20
D1690V3, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATL1 MUTATED        6      0      2
  ATL1 WILD-TYPE     81     80     98
D1690V4, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATL1 MUTATED        2      4      6
  ATL1 WILD-TYPE     87    156    132
D1690V5, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATL1 MUTATED        4      5      3
  ATL1 WILD-TYPE    178    128     69
D1690V6, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATL1 MUTATED        0      2      4      6
  ATL1 WILD-TYPE    112     94     88    180
D1690V7, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATL1 MUTATED        1      1      3      1      1      0      5
  ATL1 WILD-TYPE     59     49     46     39     62    125     94
D1690V8, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATL1 MUTATED        1      3      0      8
  ATL1 WILD-TYPE    129     75     68    188
D1690V9, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATL1 MUTATED        1      4      1      1      2      0      0      1      2
  ATL1 WILD-TYPE     39     58     27     79     67     48     43     27     72
D1690V10, multiclass
        clus
vv       ATL1 MUTATED ATL1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATL1 MUTATED        0      0      0      1
  ATL1 WILD-TYPE     33     31     27     18
D1690V11, multiclass
[1] "Remove cluster labels:" "ATL1 MUTATED"          
clus
  ATL1 MUTATED ATL1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-G5-6641 
"ATL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATL1 MUTATED        1      0      0      0
  ATL1 WILD-TYPE     53     10     24     22
D1690V12, multiclass
[1] "Remove cluster labels:" "ATL1 MUTATED"          
clus
  ATL1 MUTATED ATL1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" "ATL1 WILD-TYPE" 
    TCGA-G5-6641 
"ATL1 WILD-TYPE" 

Clustering(1691) Variable = ACRC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        4      0      1      1
  ACRC WILD-TYPE     42     58     63     42
D1691V1, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        4      1      1
  ACRC WILD-TYPE     47     82     76
D1691V2, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        7      1      5      1
  ACRC WILD-TYPE    171    182     96     19
D1691V3, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        3      3      4
  ACRC WILD-TYPE     84     77     96
D1691V4, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            3             84
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        1      5      7
  ACRC WILD-TYPE     88    155    131
D1691V5, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        4      4      5
  ACRC WILD-TYPE    178    129     67
D1691V6, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        4      5      1      5
  ACRC WILD-TYPE    108     91     91    181
D1691V7, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            4            108
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACRC MUTATED        2      2      2      0      3      1      5
  ACRC WILD-TYPE     58     48     47     40     60    124     94
D1691V8, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        6      1      0      8
  ACRC WILD-TYPE    124     77     68    188
D1691V9, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ACRC MUTATED        0      0      3      5      3      1      0      2      1
  ACRC WILD-TYPE     40     62     25     75     66     47     43     26     73
D1691V10, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            3             25
  CLUS_4            5             75
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        1      1      0      0
  ACRC WILD-TYPE     32     30     27     19
D1691V11, multiclass
[1] "Remove cluster labels:" "ACRC MUTATED"          
clus
  ACRC MUTATED ACRC WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        1      0      0      1
  ACRC WILD-TYPE     53     10     24     21
D1691V12, multiclass
[1] "Remove cluster labels:" "ACRC MUTATED"          
clus
  ACRC MUTATED ACRC WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6569 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" "ACRC WILD-TYPE" 

Clustering(1692) Variable = ZNF577 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF577 MUTATED        0      0      1      4
  ZNF577 WILD-TYPE     46     58     63     39
D1692V1, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF577 MUTATED        2      1      2
  ZNF577 WILD-TYPE     49     82     75
D1692V2, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF577 MUTATED        9      2      2      0
  ZNF577 WILD-TYPE    169    181     99     20
D1692V3, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF577 MUTATED        4      0      4
  ZNF577 WILD-TYPE     83     80     96
D1692V4, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF577 MUTATED        3      5      5
  ZNF577 WILD-TYPE     86    155    133
D1692V5, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF577 MUTATED        6      6      1
  ZNF577 WILD-TYPE    176    127     71
D1692V6, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF577 MUTATED        1      3      4      5
  ZNF577 WILD-TYPE    111     93     88    181
D1692V7, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF577 MUTATED        2      0      3      2      2      0      4
  ZNF577 WILD-TYPE     58     50     46     38     61    125     95
D1692V8, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF577 MUTATED        4      3      0      5
  ZNF577 WILD-TYPE    126     75     68    191
D1692V9, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF577 MUTATED        0      3      2      2      4      0      1      0
  ZNF577 WILD-TYPE     40     59     26     78     65     48     42     28
                  vv
clus               CLUS_9
  ZNF577 MUTATED        0
  ZNF577 WILD-TYPE     74
D1692V10, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF577 MUTATED        0      1      0      2
  ZNF577 WILD-TYPE     33     30     27     17
D1692V11, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF577 MUTATED        3      0      0      0
  ZNF577 WILD-TYPE     51     10     24     22
D1692V12, multiclass
        clus
vv       ZNF577 MUTATED ZNF577 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1693) Variable = POPDC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POPDC3 MUTATED        1      1      0      2
  POPDC3 WILD-TYPE     45     57     64     41
D1693V1, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POPDC3 MUTATED        1      3      0
  POPDC3 WILD-TYPE     50     80     77
D1693V2, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POPDC3 MUTATED        6      0      2      0
  POPDC3 WILD-TYPE    172    183     99     20
D1693V3, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POPDC3 MUTATED        1      1      1
  POPDC3 WILD-TYPE     86     79     99
D1693V4, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POPDC3 MUTATED        1      4      0
  POPDC3 WILD-TYPE     88    156    138
D1693V5, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              0              138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POPDC3 MUTATED        1      3      1
  POPDC3 WILD-TYPE    181    130     71
D1693V6, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POPDC3 MUTATED        2      2      0      4
  POPDC3 WILD-TYPE    110     94     92    182
D1693V7, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  POPDC3 MUTATED        1      3      0      0      0      2      2
  POPDC3 WILD-TYPE     59     47     49     40     63    123     97
D1693V8, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POPDC3 MUTATED        3      1      1      3
  POPDC3 WILD-TYPE    127     77     67    193
D1693V9, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  POPDC3 MUTATED        1      0      2      3      1      0      0      0
  POPDC3 WILD-TYPE     39     62     26     77     68     48     43     28
                  vv
clus               CLUS_9
  POPDC3 MUTATED        1
  POPDC3 WILD-TYPE     73
D1693V10, multiclass
        clus
vv       POPDC3 MUTATED POPDC3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POPDC3 MUTATED        1      0      0      0
  POPDC3 WILD-TYPE     32     31     27     19
D1693V11, multiclass
[1] "Remove cluster labels:" "POPDC3 MUTATED"        
clus
  POPDC3 MUTATED POPDC3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-G5-6641 
"POPDC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POPDC3 MUTATED        1      0      0      0
  POPDC3 WILD-TYPE     53     10     24     22
D1693V12, multiclass
[1] "Remove cluster labels:" "POPDC3 MUTATED"        
clus
  POPDC3 MUTATED POPDC3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" "POPDC3 WILD-TYPE" 
      TCGA-G5-6641 
"POPDC3 WILD-TYPE" 

Clustering(1694) Variable = ESR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESR1 MUTATED        3      0      2      4
  ESR1 WILD-TYPE     43     58     62     39
D1694V1, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESR1 MUTATED        6      3      0
  ESR1 WILD-TYPE     45     80     77
D1694V2, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            3             80
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESR1 MUTATED       16      1      3      0
  ESR1 WILD-TYPE    162    182     98     20
D1694V3, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1           16            162
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESR1 MUTATED        5      1      4
  ESR1 WILD-TYPE     82     79     96
D1694V4, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESR1 MUTATED        3      5      9
  ESR1 WILD-TYPE     86    155    129
D1694V5, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            155
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ESR1 MUTATED       10      4      3
  ESR1 WILD-TYPE    172    129     69
D1694V6, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESR1 MUTATED        1      6      4      9
  ESR1 WILD-TYPE    111     90     88    177
D1694V7, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            6             90
  CLUS_3            4             88
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESR1 MUTATED        0      0      9      1      0      2      8
  ESR1 WILD-TYPE     60     50     40     39     63    123     91
D1694V8, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            9             40
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESR1 MUTATED        4      3      0     11
  ESR1 WILD-TYPE    126     75     68    185
D1694V9, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4           11            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ESR1 MUTATED        1      4      1      0      8      1      0      1      2
  ESR1 WILD-TYPE     39     58     27     80     61     47     43     27     72
D1694V10, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            8             61
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESR1 MUTATED        1      1      0      2
  ESR1 WILD-TYPE     32     30     27     17
D1694V11, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESR1 MUTATED        3      0      1      0
  ESR1 WILD-TYPE     51     10     23     22
D1694V12, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1695) Variable = SLC25A40 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A40 MUTATED        0      0      0      3
  SLC25A40 WILD-TYPE     46     58     64     40
D1695V1, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                0                 46
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A40 MUTATED        1      1      1
  SLC25A40 WILD-TYPE     50     82     76
D1695V2, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A40 MUTATED        5      0      0      0
  SLC25A40 WILD-TYPE    173    183    101     20
D1695V3, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                5                173
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A40 MUTATED        1      0      1
  SLC25A40 WILD-TYPE     86     80     99
D1695V4, multiclass
[1] "Remove cluster labels:" "SLC25A40 MUTATED"      
clus
  SLC25A40 MUTATED SLC25A40 WILD-TYPE 
                 2                265 
        TCGA-A6-2671         TCGA-A6-2677         TCGA-A6-3809 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-4105         TCGA-A6-5656 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-5657         TCGA-A6-5659         TCGA-A6-5660 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-5661         TCGA-A6-5662         TCGA-A6-5664 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-5665         TCGA-A6-5666         TCGA-A6-6137 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6138         TCGA-A6-6141         TCGA-A6-6142 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6648         TCGA-A6-6649         TCGA-A6-6651 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6652         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6780         TCGA-A6-6781         TCGA-A6-6782 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3492         TCGA-AA-3496 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3502         TCGA-AA-3510         TCGA-AA-3511 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3655         TCGA-AA-3660         TCGA-AA-3662 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3663         TCGA-AA-3697         TCGA-AA-3712 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AD-5900         TCGA-AD-6548 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6888         TCGA-AD-6890         TCGA-AD-6895 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6899         TCGA-AD-6901         TCGA-AD-6963 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AF-2693         TCGA-AF-4110         TCGA-AF-6136 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AG-3742         TCGA-AG-A01W 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A026 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A036         TCGA-AH-6544 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AH-6644         TCGA-AU-3779         TCGA-AU-6004 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AY-5543         TCGA-AY-6196         TCGA-AY-6197 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AY-6386         TCGA-AZ-4315         TCGA-AZ-4323 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-4681         TCGA-AZ-4682 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-5407         TCGA-AZ-6598 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6599         TCGA-AZ-6600         TCGA-AZ-6601 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6606 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-AZ-6608         TCGA-CA-5254 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CA-5255         TCGA-CA-5796         TCGA-CA-5797 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CA-6715         TCGA-CA-6716         TCGA-CA-6718 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6622         TCGA-CI-6624 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-4947         TCGA-CK-4948         TCGA-CK-4950 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-4952         TCGA-CK-5912         TCGA-CK-5913 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-5914         TCGA-CK-5915         TCGA-CK-5916 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-6746         TCGA-CK-6747         TCGA-CK-6748 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-6751         TCGA-CL-5917         TCGA-CL-5918 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-4743         TCGA-CM-4744         TCGA-CM-4746 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-4747         TCGA-CM-4752         TCGA-CM-5341 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-5344         TCGA-CM-5348         TCGA-CM-5349 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-5861         TCGA-CM-5862 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-5863         TCGA-CM-5864         TCGA-CM-5868 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6161         TCGA-CM-6162         TCGA-CM-6163 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6164         TCGA-CM-6165         TCGA-CM-6166 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6168         TCGA-CM-6169 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6170         TCGA-CM-6171         TCGA-CM-6172 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6675         TCGA-CM-6676 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-5538 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6929         TCGA-D5-6930 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6931         TCGA-D5-6932         TCGA-D5-7000 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A0X9         TCGA-DM-A0XD         TCGA-DM-A0XF 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A285 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A28C         TCGA-DM-A28E         TCGA-DM-A28F 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A28G         TCGA-DM-A28H         TCGA-DM-A28K 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G5-6641 
"SLC25A40 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A40 MUTATED        0      3      2
  SLC25A40 WILD-TYPE     89    157    136
D1695V5, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                3                157
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A40 MUTATED        2      3      0
  SLC25A40 WILD-TYPE    180    130     72
D1695V6, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A40 MUTATED        0      1      1      3
  SLC25A40 WILD-TYPE    112     95     91    183
D1695V7, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC25A40 MUTATED        1      0      1      0      1      0      2
  SLC25A40 WILD-TYPE     59     50     48     40     62    125     97
D1695V8, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A40 MUTATED        1      1      0      2
  SLC25A40 WILD-TYPE    129     77     68    194
D1695V9, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC25A40 MUTATED        0      1      1      0      2      0      0      0
  SLC25A40 WILD-TYPE     40     61     27     80     67     48     43     28
                    vv
clus                 CLUS_9
  SLC25A40 MUTATED        0
  SLC25A40 WILD-TYPE     74
D1695V10, multiclass
        clus
vv       SLC25A40 MUTATED SLC25A40 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A40 MUTATED        0      0      0      1
  SLC25A40 WILD-TYPE     33     31     27     18
D1695V11, multiclass
[1] "Remove cluster labels:" "SLC25A40 MUTATED"      
clus
  SLC25A40 MUTATED SLC25A40 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G5-6641 
"SLC25A40 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A40 MUTATED        0      0      1      0
  SLC25A40 WILD-TYPE     54     10     23     22
D1695V12, multiclass
[1] "Remove cluster labels:" "SLC25A40 MUTATED"      
clus
  SLC25A40 MUTATED SLC25A40 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" "SLC25A40 WILD-TYPE" 
        TCGA-G5-6641 
"SLC25A40 WILD-TYPE" 

Clustering(1696) Variable = DHX32 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX32 MUTATED        2      0      0      1
  DHX32 WILD-TYPE     44     58     64     42
D1696V1, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX32 MUTATED        2      0      1
  DHX32 WILD-TYPE     49     83     76
D1696V2, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX32 MUTATED        7      4      1      0
  DHX32 WILD-TYPE    171    179    100     20
D1696V3, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX32 MUTATED        5      0      4
  DHX32 WILD-TYPE     82     80     96
D1696V4, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX32 MUTATED        1      4      6
  DHX32 WILD-TYPE     88    156    132
D1696V5, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX32 MUTATED        5      5      1
  DHX32 WILD-TYPE    177    128     71
D1696V6, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX32 MUTATED        0      4      5      3
  DHX32 WILD-TYPE    112     92     87    183
D1696V7, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHX32 MUTATED        2      3      2      1      2      0      2
  DHX32 WILD-TYPE     58     47     47     39     61    125     97
D1696V8, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX32 MUTATED        4      2      0      6
  DHX32 WILD-TYPE    126     76     68    190
D1696V9, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DHX32 MUTATED        0      2      1      0      5      0      3      0
  DHX32 WILD-TYPE     40     60     27     80     64     48     40     28
                 vv
clus              CLUS_9
  DHX32 MUTATED        1
  DHX32 WILD-TYPE     73
D1696V10, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX32 MUTATED        1      1      0      2
  DHX32 WILD-TYPE     32     30     27     17
D1696V11, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX32 MUTATED        3      0      1      0
  DHX32 WILD-TYPE     51     10     23     22
D1696V12, multiclass
        clus
vv       DHX32 MUTATED DHX32 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1697) Variable = BFSP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFSP1 MUTATED        1      0      0      1
  BFSP1 WILD-TYPE     45     58     64     42
D1697V1, multiclass
[1] "Remove cluster labels:" "BFSP1 MUTATED"         
clus
  BFSP1 MUTATED BFSP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AY-4071 
"BFSP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BFSP1 MUTATED        0      1      1
  BFSP1 WILD-TYPE     51     82     76
D1697V2, multiclass
[1] "Remove cluster labels:" "BFSP1 MUTATED"         
clus
  BFSP1 MUTATED BFSP1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" "BFSP1 WILD-TYPE" 
     TCGA-AY-4071 
"BFSP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFSP1 MUTATED        5      2      2      0
  BFSP1 WILD-TYPE    173    181     99     20
D1697V3, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BFSP1 MUTATED        3      0      4
  BFSP1 WILD-TYPE     84     80     96
D1697V4, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BFSP1 MUTATED        3      3      1
  BFSP1 WILD-TYPE     86    157    137
D1697V5, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BFSP1 MUTATED        3      3      1
  BFSP1 WILD-TYPE    179    130     71
D1697V6, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFSP1 MUTATED        2      2      3      2
  BFSP1 WILD-TYPE    110     94     89    184
D1697V7, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BFSP1 MUTATED        2      1      3      0      2      1      0
  BFSP1 WILD-TYPE     58     49     46     40     61    124     99
D1697V8, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFSP1 MUTATED        5      2      0      2
  BFSP1 WILD-TYPE    125     76     68    194
D1697V9, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BFSP1 MUTATED        1      2      1      2      2      0      1      0
  BFSP1 WILD-TYPE     39     60     27     78     67     48     42     28
                 vv
clus              CLUS_9
  BFSP1 MUTATED        0
  BFSP1 WILD-TYPE     74
D1697V10, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFSP1 MUTATED        3      1      0      1
  BFSP1 WILD-TYPE     30     30     27     18
D1697V11, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BFSP1 MUTATED        5      0      0      0
  BFSP1 WILD-TYPE     49     10     24     22
D1697V12, multiclass
        clus
vv       BFSP1 MUTATED BFSP1 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1698) Variable = CLEC1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC1A MUTATED        1      1      0      2
  CLEC1A WILD-TYPE     45     57     64     41
D1698V1, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC1A MUTATED        1      2      1
  CLEC1A WILD-TYPE     50     81     76
D1698V2, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC1A MUTATED        8      1      1      0
  CLEC1A WILD-TYPE    170    182    100     20
D1698V3, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              8              170
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC1A MUTATED        2      1      3
  CLEC1A WILD-TYPE     85     79     97
D1698V4, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC1A MUTATED        0      3      5
  CLEC1A WILD-TYPE     89    157    133
D1698V5, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLEC1A MUTATED        5      3      0
  CLEC1A WILD-TYPE    177    130     72
D1698V6, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC1A MUTATED        1      2      3      4
  CLEC1A WILD-TYPE    111     94     89    182
D1698V7, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              3               89
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLEC1A MUTATED        2      1      3      0      1      1      2
  CLEC1A WILD-TYPE     58     49     46     40     62    124     97
D1698V8, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC1A MUTATED        3      2      1      4
  CLEC1A WILD-TYPE    127     76     67    192
D1698V9, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLEC1A MUTATED        0      2      1      1      2      1      2      1
  CLEC1A WILD-TYPE     40     60     27     79     67     47     41     27
                  vv
clus               CLUS_9
  CLEC1A MUTATED        0
  CLEC1A WILD-TYPE     74
D1698V10, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC1A MUTATED        1      0      0      2
  CLEC1A WILD-TYPE     32     31     27     17
D1698V11, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLEC1A MUTATED        2      0      0      1
  CLEC1A WILD-TYPE     52     10     24     21
D1698V12, multiclass
        clus
vv       CLEC1A MUTATED CLEC1A WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1699) Variable = BIRC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC6 MUTATED        7      0      0      5
  BIRC6 WILD-TYPE     39     58     64     38
D1699V1, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC6 MUTATED        8      2      2
  BIRC6 WILD-TYPE     43     81     75
D1699V2, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC6 MUTATED       31      6      1      1
  BIRC6 WILD-TYPE    147    177    100     19
D1699V3, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1            31             147
  CLUS_2             6             177
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC6 MUTATED       15      4      9
  BIRC6 WILD-TYPE     72     76     91
D1699V4, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1            15              72
  CLUS_2             4              76
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC6 MUTATED        4     10     22
  BIRC6 WILD-TYPE     85    150    116
D1699V5, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             4              85
  CLUS_2            10             150
  CLUS_3            22             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BIRC6 MUTATED       22      8      6
  BIRC6 WILD-TYPE    160    125     66
D1699V6, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1            22             160
  CLUS_2             8             125
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC6 MUTATED        4     10     12     13
  BIRC6 WILD-TYPE    108     86     80    173
D1699V7, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             4             108
  CLUS_2            10              86
  CLUS_3            12              80
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BIRC6 MUTATED        5      4     12      1      4      1     12
  BIRC6 WILD-TYPE     55     46     37     39     59    124     87
D1699V8, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3            12              37
  CLUS_4             1              39
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7            12              87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC6 MUTATED       12      7      2     17
  BIRC6 WILD-TYPE    118     71     66    179
D1699V9, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             7              71
  CLUS_3             2              66
  CLUS_4            17             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BIRC6 MUTATED        1     10      4      6     11      1      2      1
  BIRC6 WILD-TYPE     39     52     24     74     58     47     41     27
                 vv
clus              CLUS_9
  BIRC6 MUTATED        2
  BIRC6 WILD-TYPE     72
D1699V10, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2            10              52
  CLUS_3             4              24
  CLUS_4             6              74
  CLUS_5            11              58
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC6 MUTATED        4      1      2      4
  BIRC6 WILD-TYPE     29     30     25     15
D1699V11, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIRC6 MUTATED        6      0      4      1
  BIRC6 WILD-TYPE     48     10     20     21
D1699V12, multiclass
        clus
vv       BIRC6 MUTATED BIRC6 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1700) Variable = MTIF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        1      0      0      2
  MTIF2 WILD-TYPE     45     58     64     41
D1700V1, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED        1      1      1
  MTIF2 WILD-TYPE     50     82     76
D1700V2, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        7      1      3      0
  MTIF2 WILD-TYPE    171    182     98     20
D1700V3, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED        3      0      4
  MTIF2 WILD-TYPE     84     80     96
D1700V4, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED        0      4      5
  MTIF2 WILD-TYPE     89    156    133
D1700V5, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED        7      2      0
  MTIF2 WILD-TYPE    175    131     72
D1700V6, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        1      1      5      4
  MTIF2 WILD-TYPE    111     95     87    182
D1700V7, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTIF2 MUTATED        1      0      3      0      3      0      4
  MTIF2 WILD-TYPE     59     50     46     40     60    125     95
D1700V8, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        3      2      1      5
  MTIF2 WILD-TYPE    127     76     67    191
D1700V9, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MTIF2 MUTATED        0      4      2      1      2      0      2      0
  MTIF2 WILD-TYPE     40     58     26     79     67     48     41     28
                 vv
clus              CLUS_9
  MTIF2 MUTATED        0
  MTIF2 WILD-TYPE     74
D1700V10, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        0      1      1      1
  MTIF2 WILD-TYPE     33     30     26     18
D1700V11, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        1      1      0      1
  MTIF2 WILD-TYPE     53      9     24     21
D1700V12, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1701) Variable = IGDCC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC3 MUTATED        1      1      1      5
  IGDCC3 WILD-TYPE     45     57     63     38
D1701V1, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGDCC3 MUTATED        3      2      3
  IGDCC3 WILD-TYPE     48     81     74
D1701V2, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC3 MUTATED        7      4      1      0
  IGDCC3 WILD-TYPE    171    179    100     20
D1701V3, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGDCC3 MUTATED        2      0      2
  IGDCC3 WILD-TYPE     85     80     98
D1701V4, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGDCC3 MUTATED        2      3      4
  IGDCC3 WILD-TYPE     87    157    134
D1701V5, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGDCC3 MUTATED        4      3      2
  IGDCC3 WILD-TYPE    178    130     70
D1701V6, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC3 MUTATED        1      4      1      6
  IGDCC3 WILD-TYPE    111     92     91    180
D1701V7, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              1               91
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGDCC3 MUTATED        1      1      3      0      0      3      4
  IGDCC3 WILD-TYPE     59     49     46     40     63    122     95
D1701V8, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC3 MUTATED        2      1      3      5
  IGDCC3 WILD-TYPE    128     77     65    191
D1701V9, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              3               65
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IGDCC3 MUTATED        0      1      0      1      4      0      1      0
  IGDCC3 WILD-TYPE     40     61     28     79     65     48     42     28
                  vv
clus               CLUS_9
  IGDCC3 MUTATED        4
  IGDCC3 WILD-TYPE     70
D1701V10, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              4               70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC3 MUTATED        1      0      1      1
  IGDCC3 WILD-TYPE     32     31     26     18
D1701V11, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC3 MUTATED        1      0      2      0
  IGDCC3 WILD-TYPE     53     10     22     22
D1701V12, multiclass
        clus
vv       IGDCC3 MUTATED IGDCC3 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1702) Variable = ZNF124 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        1      0      0      1
  ZNF124 WILD-TYPE     45     58     64     42
D1702V1, multiclass
[1] "Remove cluster labels:" "ZNF124 MUTATED"        
clus
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF124 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        2      0      0
  ZNF124 WILD-TYPE     49     83     77
D1702V2, multiclass
[1] "Remove cluster labels:" "ZNF124 MUTATED"        
clus
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF124 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        8      0      0      0
  ZNF124 WILD-TYPE    170    183    101     20
D1702V3, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        4      0      3
  ZNF124 WILD-TYPE     83     80     97
D1702V4, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        0      3      5
  ZNF124 WILD-TYPE     89    157    133
D1702V5, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        4      3      1
  ZNF124 WILD-TYPE    178    130     71
D1702V6, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        0      4      2      2
  ZNF124 WILD-TYPE    112     92     90    184
D1702V7, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF124 MUTATED        0      1      4      0      1      0      2
  ZNF124 WILD-TYPE     60     49     45     40     62    125     97
D1702V8, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        4      1      0      2
  ZNF124 WILD-TYPE    126     77     68    194
D1702V9, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF124 MUTATED        1      2      0      1      2      0      0      0
  ZNF124 WILD-TYPE     39     60     28     79     67     48     43     28
                  vv
clus               CLUS_9
  ZNF124 MUTATED        1
  ZNF124 WILD-TYPE     73
D1702V10, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        0      0      0      1
  ZNF124 WILD-TYPE     33     31     27     18
D1702V11, multiclass
[1] "Remove cluster labels:" "ZNF124 MUTATED"        
clus
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF124 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        0      0      1      0
  ZNF124 WILD-TYPE     54     10     23     22
D1702V12, multiclass
[1] "Remove cluster labels:" "ZNF124 MUTATED"        
clus
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" "ZNF124 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF124 WILD-TYPE" 

Clustering(1703) Variable = SLC38A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A5 MUTATED        0      0      1      0
  SLC38A5 WILD-TYPE     46     58     63     43
D1703V1, multiclass
[1] "Remove cluster labels:" "SLC38A5 MUTATED"       
clus
  SLC38A5 MUTATED SLC38A5 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3809 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A5 MUTATED        0      0      1
  SLC38A5 WILD-TYPE     51     83     76
D1703V2, multiclass
[1] "Remove cluster labels:" "SLC38A5 MUTATED"       
clus
  SLC38A5 MUTATED SLC38A5 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3809 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A5 MUTATED        3      2      1      0
  SLC38A5 WILD-TYPE    175    181    100     20
D1703V3, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A5 MUTATED        1      0      4
  SLC38A5 WILD-TYPE     86     80     96
D1703V4, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A5 MUTATED        1      2      1
  SLC38A5 WILD-TYPE     88    158    137
D1703V5, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A5 MUTATED        2      2      0
  SLC38A5 WILD-TYPE    180    131     72
D1703V6, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A5 MUTATED        0      4      1      1
  SLC38A5 WILD-TYPE    112     92     91    185
D1703V7, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC38A5 MUTATED        0      0      4      1      0      0      1
  SLC38A5 WILD-TYPE     60     50     45     39     63    125     98
D1703V8, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A5 MUTATED        4      1      0      1
  SLC38A5 WILD-TYPE    126     77     68    195
D1703V9, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC38A5 MUTATED        1      2      0      1      2      0      0      0
  SLC38A5 WILD-TYPE     39     60     28     79     67     48     43     28
                   vv
clus                CLUS_9
  SLC38A5 MUTATED        0
  SLC38A5 WILD-TYPE     74
D1703V10, multiclass
        clus
vv       SLC38A5 MUTATED SLC38A5 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A5 MUTATED        1      0      0      0
  SLC38A5 WILD-TYPE     32     31     27     19
D1703V11, multiclass
[1] "Remove cluster labels:" "SLC38A5 MUTATED"       
clus
  SLC38A5 MUTATED SLC38A5 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6607        TCGA-CA-6718 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-G5-6641 
"SLC38A5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A5 MUTATED        1      0      0      0
  SLC38A5 WILD-TYPE     53     10     24     22
D1703V12, multiclass
[1] "Remove cluster labels:" "SLC38A5 MUTATED"       
clus
  SLC38A5 MUTATED SLC38A5 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6607        TCGA-CA-6718 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" "SLC38A5 WILD-TYPE" 
       TCGA-G5-6641 
"SLC38A5 WILD-TYPE" 

Clustering(1704) Variable = C15ORF33 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF33 MUTATED        1      0      1      3
  C15ORF33 WILD-TYPE     45     58     63     40
D1704V1, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF33 MUTATED        2      0      3
  C15ORF33 WILD-TYPE     49     83     74
D1704V2, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                0                 83
  CLUS_3                3                 74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF33 MUTATED        9      3      0      0
  C15ORF33 WILD-TYPE    169    180    101     20
D1704V3, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF33 MUTATED        4      1      2
  C15ORF33 WILD-TYPE     83     79     98
D1704V4, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF33 MUTATED        2      4      4
  C15ORF33 WILD-TYPE     87    156    134
D1704V5, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                4                156
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF33 MUTATED        4      3      3
  C15ORF33 WILD-TYPE    178    130     69
D1704V6, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                3                130
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF33 MUTATED        1      4      2      5
  C15ORF33 WILD-TYPE    111     92     90    181
D1704V7, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                4                 92
  CLUS_3                2                 90
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C15ORF33 MUTATED        1      2      1      1      3      1      3
  C15ORF33 WILD-TYPE     59     48     48     39     60    124     96
D1704V8, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                1                 48
  CLUS_4                1                 39
  CLUS_5                3                 60
  CLUS_6                1                124
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF33 MUTATED        0      4      1      6
  C15ORF33 WILD-TYPE    130     74     67    190
D1704V9, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                0                130
  CLUS_2                4                 74
  CLUS_3                1                 67
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C15ORF33 MUTATED        1      3      1      1      3      0      1      0
  C15ORF33 WILD-TYPE     39     59     27     79     66     48     42     28
                    vv
clus                 CLUS_9
  C15ORF33 MUTATED        1
  C15ORF33 WILD-TYPE     73
D1704V10, multiclass
        clus
vv       C15ORF33 MUTATED C15ORF33 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF33 MUTATED        2      0      0      0
  C15ORF33 WILD-TYPE     31     31     27     19
D1704V11, multiclass
[1] "Remove cluster labels:" "C15ORF33 MUTATED"      
clus
  C15ORF33 MUTATED C15ORF33 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-A6-6142         TCGA-A6-6649         TCGA-A6-6651 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF33 MUTATED        2      0      0      0
  C15ORF33 WILD-TYPE     52     10     24     22
D1704V12, multiclass
[1] "Remove cluster labels:" "C15ORF33 MUTATED"      
clus
  C15ORF33 MUTATED C15ORF33 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-A6-6142         TCGA-A6-6649         TCGA-A6-6651 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6781 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" "C15ORF33 WILD-TYPE" 

Clustering(1705) Variable = WEE2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE2 MUTATED        0      0      0      2
  WEE2 WILD-TYPE     46     58     64     41
D1705V1, multiclass
[1] "Remove cluster labels:" "WEE2 MUTATED"          
clus
  WEE2 MUTATED WEE2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AY-4071 
"WEE2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE2 MUTATED        0      1      1
  WEE2 WILD-TYPE     51     82     76
D1705V2, multiclass
[1] "Remove cluster labels:" "WEE2 MUTATED"          
clus
  WEE2 MUTATED WEE2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AY-4071 
"WEE2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE2 MUTATED        6      2      0      2
  WEE2 WILD-TYPE    172    181    101     18
D1705V3, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE2 MUTATED        3      2      3
  WEE2 WILD-TYPE     84     78     97
D1705V4, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE2 MUTATED        1      1      6
  WEE2 WILD-TYPE     88    159    132
D1705V5, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WEE2 MUTATED        6      1      1
  WEE2 WILD-TYPE    176    132     71
D1705V6, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE2 MUTATED        3      4      1      2
  WEE2 WILD-TYPE    109     92     91    184
D1705V7, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WEE2 MUTATED        2      0      2      3      1      0      2
  WEE2 WILD-TYPE     58     50     47     37     62    125     97
D1705V8, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE2 MUTATED        5      1      2      2
  WEE2 WILD-TYPE    125     77     66    194
D1705V9, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  WEE2 MUTATED        2      1      2      0      1      2      2      0      0
  WEE2 WILD-TYPE     38     61     26     80     68     46     41     28     74
D1705V10, multiclass
        clus
vv       WEE2 MUTATED WEE2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE2 MUTATED        0      0      2      0
  WEE2 WILD-TYPE     33     31     25     19
D1705V11, multiclass
[1] "Remove cluster labels:" "WEE2 MUTATED"          
clus
  WEE2 MUTATED WEE2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WEE2 MUTATED        0      0      0      2
  WEE2 WILD-TYPE     54     10     24     20
D1705V12, multiclass
[1] "Remove cluster labels:" "WEE2 MUTATED"          
clus
  WEE2 MUTATED WEE2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" "WEE2 WILD-TYPE" 

Clustering(1706) Variable = MAOB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOB MUTATED        1      1      0      0
  MAOB WILD-TYPE     45     57     64     43
D1706V1, multiclass
[1] "Remove cluster labels:" "MAOB MUTATED"          
clus
  MAOB MUTATED MAOB WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AY-4071 
"MAOB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOB MUTATED        1      1      0
  MAOB WILD-TYPE     50     82     77
D1706V2, multiclass
[1] "Remove cluster labels:" "MAOB MUTATED"          
clus
  MAOB MUTATED MAOB WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" "MAOB WILD-TYPE" 
    TCGA-AY-4071 
"MAOB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOB MUTATED        5      4      0      0
  MAOB WILD-TYPE    173    179    101     20
D1706V3, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            5            173
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOB MUTATED        2      1      4
  MAOB WILD-TYPE     85     79     96
D1706V4, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOB MUTATED        1      4      4
  MAOB WILD-TYPE     88    156    134
D1706V5, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAOB MUTATED        6      1      2
  MAOB WILD-TYPE    176    132     70
D1706V6, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOB MUTATED        2      4      1      2
  MAOB WILD-TYPE    110     92     91    184
D1706V7, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAOB MUTATED        2      0      3      1      1      1      1
  MAOB WILD-TYPE     58     50     46     39     62    124     98
D1706V8, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOB MUTATED        4      0      4      1
  MAOB WILD-TYPE    126     78     64    195
D1706V9, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            4             64
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MAOB MUTATED        1      1      0      2      2      0      3      0      0
  MAOB WILD-TYPE     39     61     28     78     67     48     40     28     74
D1706V10, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOB MUTATED        2      0      1      0
  MAOB WILD-TYPE     31     31     26     19
D1706V11, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAOB MUTATED        2      1      0      0
  MAOB WILD-TYPE     52      9     24     22
D1706V12, multiclass
        clus
vv       MAOB MUTATED MAOB WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1707) Variable = REL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REL MUTATED        1      0      0      2
  REL WILD-TYPE     45     58     64     41
D1707V1, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           2            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  REL MUTATED        3      0      0
  REL WILD-TYPE     48     83     77
D1707V2, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           3            48
  CLUS_2           0            83
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REL MUTATED        7      3      1      0
  REL WILD-TYPE    171    180    100     20
D1707V3, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           7           171
  CLUS_2           3           180
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  REL MUTATED        5      1      2
  REL WILD-TYPE     82     79     98
D1707V4, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           5            82
  CLUS_2           1            79
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  REL MUTATED        3      1      5
  REL WILD-TYPE     86    159    133
D1707V5, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           3            86
  CLUS_2           1           159
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  REL MUTATED        8      0      1
  REL WILD-TYPE    174    133     71
D1707V6, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           8           174
  CLUS_2           0           133
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REL MUTATED        0      2      6      3
  REL WILD-TYPE    112     94     86    183
D1707V7, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           0           112
  CLUS_2           2            94
  CLUS_3           6            86
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  REL MUTATED        1      0      4      1      2      0      3
  REL WILD-TYPE     59     50     45     39     61    125     96
D1707V8, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           4            45
  CLUS_4           1            39
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           3            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REL MUTATED        2      5      1      3
  REL WILD-TYPE    128     73     67    193
D1707V9, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           2           128
  CLUS_2           5            73
  CLUS_3           1            67
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  REL MUTATED        0      6      0      1      3      0      1      0      0
  REL WILD-TYPE     40     56     28     79     66     48     42     28     74
D1707V10, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           0            40
  CLUS_2           6            56
  CLUS_3           0            28
  CLUS_4           1            79
  CLUS_5           3            66
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REL MUTATED        1      1      0      1
  REL WILD-TYPE     32     30     27     18
D1707V11, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  REL MUTATED        3      0      0      0
  REL WILD-TYPE     51     10     24     22
D1707V12, multiclass
        clus
vv       REL MUTATED REL WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1708) Variable = MMP27 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP27 MUTATED        3      0      0      1
  MMP27 WILD-TYPE     43     58     64     42
D1708V1, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP27 MUTATED        2      1      1
  MMP27 WILD-TYPE     49     82     76
D1708V2, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP27 MUTATED        4      2      2      1
  MMP27 WILD-TYPE    174    181     99     19
D1708V3, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP27 MUTATED        3      1      1
  MMP27 WILD-TYPE     84     79     99
D1708V4, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP27 MUTATED        0      3      3
  MMP27 WILD-TYPE     89    157    135
D1708V5, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP27 MUTATED        3      2      1
  MMP27 WILD-TYPE    179    131     71
D1708V6, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP27 MUTATED        2      1      2      4
  MMP27 WILD-TYPE    110     95     90    182
D1708V7, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP27 MUTATED        1      1      1      2      1      1      2
  MMP27 WILD-TYPE     59     49     48     38     62    124     97
D1708V8, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP27 MUTATED        2      3      0      4
  MMP27 WILD-TYPE    128     75     68    192
D1708V9, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MMP27 MUTATED        2      3      0      1      3      0      0      0
  MMP27 WILD-TYPE     38     59     28     79     66     48     43     28
                 vv
clus              CLUS_9
  MMP27 MUTATED        0
  MMP27 WILD-TYPE     74
D1708V10, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP27 MUTATED        1      1      0      1
  MMP27 WILD-TYPE     32     30     27     18
D1708V11, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP27 MUTATED        3      0      0      0
  MMP27 WILD-TYPE     51     10     24     22
D1708V12, multiclass
        clus
vv       MMP27 MUTATED MMP27 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1709) Variable = ZNF7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        2      0      0      3
  ZNF7 WILD-TYPE     44     58     64     40
D1709V1, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZNF7 MUTATED        2      2      1
  ZNF7 WILD-TYPE     49     81     76
D1709V2, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED       11      1      2      0
  ZNF7 WILD-TYPE    167    182     99     20
D1709V3, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZNF7 MUTATED        6      1      2
  ZNF7 WILD-TYPE     81     79     98
D1709V4, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZNF7 MUTATED        1      3      7
  ZNF7 WILD-TYPE     88    157    131
D1709V5, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZNF7 MUTATED        6      4      1
  ZNF7 WILD-TYPE    176    129     71
D1709V6, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        1      4      3      6
  ZNF7 WILD-TYPE    111     92     89    180
D1709V7, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF7 MUTATED        1      2      3      1      1      1      5
  ZNF7 WILD-TYPE     59     48     46     39     62    124     94
D1709V8, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        2      3      1      7
  ZNF7 WILD-TYPE    128     75     67    189
D1709V9, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZNF7 MUTATED        1      2      2      2      3      0      1      0      2
  ZNF7 WILD-TYPE     39     60     26     78     66     48     42     28     72
D1709V10, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        2      1      0      1
  ZNF7 WILD-TYPE     31     30     27     18
D1709V11, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        2      0      1      1
  ZNF7 WILD-TYPE     52     10     23     21
D1709V12, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1710) Variable = LDLRAD3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLRAD3 MUTATED        1      0      0      1
  LDLRAD3 WILD-TYPE     45     58     64     42
D1710V1, multiclass
[1] "Remove cluster labels:" "LDLRAD3 MUTATED"       
clus
  LDLRAD3 MUTATED LDLRAD3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3952 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AY-4071 
"LDLRAD3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LDLRAD3 MUTATED        2      0      0
  LDLRAD3 WILD-TYPE     49     83     77
D1710V2, multiclass
[1] "Remove cluster labels:" "LDLRAD3 MUTATED"       
clus
  LDLRAD3 MUTATED LDLRAD3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3952 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" "LDLRAD3 WILD-TYPE" 
       TCGA-AY-4071 
"LDLRAD3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLRAD3 MUTATED        6      0      0      0
  LDLRAD3 WILD-TYPE    172    183    101     20
D1710V3, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LDLRAD3 MUTATED        1      0      3
  LDLRAD3 WILD-TYPE     86     80     97
D1710V4, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LDLRAD3 MUTATED        2      2      1
  LDLRAD3 WILD-TYPE     87    158    137
D1710V5, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LDLRAD3 MUTATED        0      3      2
  LDLRAD3 WILD-TYPE    182    130     70
D1710V6, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               0               182
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLRAD3 MUTATED        0      3      1      2
  LDLRAD3 WILD-TYPE    112     93     91    184
D1710V7, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LDLRAD3 MUTATED        0      1      2      0      0      0      3
  LDLRAD3 WILD-TYPE     60     49     47     40     63    125     96
D1710V8, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLRAD3 MUTATED        0      0      0      6
  LDLRAD3 WILD-TYPE    130     78     68    190
D1710V9, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               0               130
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LDLRAD3 MUTATED        0      0      0      0      4      0      0      1
  LDLRAD3 WILD-TYPE     40     62     28     80     65     48     43     27
                   vv
clus                CLUS_9
  LDLRAD3 MUTATED        1
  LDLRAD3 WILD-TYPE     73
D1710V10, multiclass
        clus
vv       LDLRAD3 MUTATED LDLRAD3 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLRAD3 MUTATED        0      0      0      0
  LDLRAD3 WILD-TYPE     33     31     27     19
D1710V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLRAD3 MUTATED        0      0      0      0
  LDLRAD3 WILD-TYPE     54     10     24     22
D1710V12, multiclass

Clustering(1711) Variable = HOOK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK3 MUTATED        2      1      0      1
  HOOK3 WILD-TYPE     44     57     64     42
D1711V1, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK3 MUTATED        2      0      2
  HOOK3 WILD-TYPE     49     83     75
D1711V2, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK3 MUTATED        9      1      1      0
  HOOK3 WILD-TYPE    169    182    100     20
D1711V3, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK3 MUTATED        4      0      3
  HOOK3 WILD-TYPE     83     80     97
D1711V4, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK3 MUTATED        1      5      3
  HOOK3 WILD-TYPE     88    155    135
D1711V5, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK3 MUTATED        3      6      0
  HOOK3 WILD-TYPE    179    127     72
D1711V6, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK3 MUTATED        0      4      3      4
  HOOK3 WILD-TYPE    112     92     89    182
D1711V7, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HOOK3 MUTATED        2      1      3      1      1      1      2
  HOOK3 WILD-TYPE     58     49     46     39     62    124     97
D1711V8, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK3 MUTATED        4      2      1      3
  HOOK3 WILD-TYPE    126     76     67    193
D1711V9, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HOOK3 MUTATED        1      1      0      1      4      2      0      0
  HOOK3 WILD-TYPE     39     61     28     79     65     46     43     28
                 vv
clus              CLUS_9
  HOOK3 MUTATED        1
  HOOK3 WILD-TYPE     73
D1711V10, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK3 MUTATED        1      1      0      1
  HOOK3 WILD-TYPE     32     30     27     18
D1711V11, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK3 MUTATED        2      0      1      0
  HOOK3 WILD-TYPE     52     10     23     22
D1711V12, multiclass
        clus
vv       HOOK3 MUTATED HOOK3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1712) Variable = NAPA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPA MUTATED        1      0      1      2
  NAPA WILD-TYPE     45     58     63     41
D1712V1, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAPA MUTATED        2      1      1
  NAPA WILD-TYPE     49     82     76
D1712V2, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPA MUTATED        5      1      1      0
  NAPA WILD-TYPE    173    182    100     20
D1712V3, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAPA MUTATED        3      0      0
  NAPA WILD-TYPE     84     80    100
D1712V4, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAPA MUTATED        2      1      2
  NAPA WILD-TYPE     87    159    136
D1712V5, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NAPA MUTATED        3      0      2
  NAPA WILD-TYPE    179    133     70
D1712V6, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            3            179
  CLUS_2            0            133
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPA MUTATED        1      0      2      4
  NAPA WILD-TYPE    111     96     90    182
D1712V7, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAPA MUTATED        0      0      1      0      2      1      3
  NAPA WILD-TYPE     60     50     48     40     61    124     96
D1712V8, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPA MUTATED        2      1      1      3
  NAPA WILD-TYPE    128     77     67    193
D1712V9, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NAPA MUTATED        1      2      1      0      2      0      0      0      1
  NAPA WILD-TYPE     39     60     27     80     67     48     43     28     73
D1712V10, multiclass
        clus
vv       NAPA MUTATED NAPA WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPA MUTATED        0      0      0      0
  NAPA WILD-TYPE     33     31     27     19
D1712V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPA MUTATED        0      0      0      0
  NAPA WILD-TYPE     54     10     24     22
D1712V12, multiclass

Clustering(1713) Variable = METT10D MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT10D MUTATED        2      0      0      3
  METT10D WILD-TYPE     44     58     64     40
D1713V1, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT10D MUTATED        1      2      2
  METT10D WILD-TYPE     50     81     75
D1713V2, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT10D MUTATED        9      2      0      0
  METT10D WILD-TYPE    169    181    101     20
D1713V3, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               9               169
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT10D MUTATED        2      0      4
  METT10D WILD-TYPE     85     80     96
D1713V4, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT10D MUTATED        0      6      2
  METT10D WILD-TYPE     89    154    136
D1713V5, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               0                89
  CLUS_2               6               154
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  METT10D MUTATED        2      4      2
  METT10D WILD-TYPE    180    129     70
D1713V6, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               2               180
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT10D MUTATED        1      2      3      5
  METT10D WILD-TYPE    111     94     89    181
D1713V7, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  METT10D MUTATED        2      1      3      0      0      1      4
  METT10D WILD-TYPE     58     49     46     40     63    124     95
D1713V8, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT10D MUTATED        3      0      0      8
  METT10D WILD-TYPE    127     78     68    188
D1713V9, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  METT10D MUTATED        0      1      4      1      5      0      0      0
  METT10D WILD-TYPE     40     61     24     79     64     48     43     28
                   vv
clus                CLUS_9
  METT10D MUTATED        0
  METT10D WILD-TYPE     74
D1713V10, multiclass
        clus
vv       METT10D MUTATED METT10D WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               4                24
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT10D MUTATED        0      0      0      0
  METT10D WILD-TYPE     33     31     27     19
D1713V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METT10D MUTATED        0      0      0      0
  METT10D WILD-TYPE     54     10     24     22
D1713V12, multiclass

Clustering(1714) Variable = PLD5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD5 MUTATED        3      0      1      1
  PLD5 WILD-TYPE     43     58     63     42
D1714V1, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLD5 MUTATED        3      0      2
  PLD5 WILD-TYPE     48     83     75
D1714V2, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD5 MUTATED        5      5      3      2
  PLD5 WILD-TYPE    173    178     98     18
D1714V3, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            5            178
  CLUS_3            3             98
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLD5 MUTATED        4      2      4
  PLD5 WILD-TYPE     83     78     96
D1714V4, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLD5 MUTATED        0      6      4
  PLD5 WILD-TYPE     89    154    134
D1714V5, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLD5 MUTATED        4      4      2
  PLD5 WILD-TYPE    178    129     70
D1714V6, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD5 MUTATED        4      4      2      5
  PLD5 WILD-TYPE    108     92     90    181
D1714V7, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLD5 MUTATED        3      0      4      2      2      1      3
  PLD5 WILD-TYPE     57     50     45     38     61    124     96
D1714V8, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            2             38
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD5 MUTATED        6      1      2      5
  PLD5 WILD-TYPE    124     77     66    191
D1714V9, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PLD5 MUTATED        1      1      0      3      7      0      2      0      0
  PLD5 WILD-TYPE     39     61     28     77     62     48     41     28     74
D1714V10, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            7             62
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD5 MUTATED        0      1      0      2
  PLD5 WILD-TYPE     33     30     27     17
D1714V11, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLD5 MUTATED        0      0      2      1
  PLD5 WILD-TYPE     54     10     22     21
D1714V12, multiclass
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1715) Variable = SON MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        3      2      1      3
  SON WILD-TYPE     43     56     63     40
D1715V1, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           3            43
  CLUS_2           2            56
  CLUS_3           1            63
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        5      2      2
  SON WILD-TYPE     46     81     75
D1715V2, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           5            46
  CLUS_2           2            81
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED       14      3      7      0
  SON WILD-TYPE    164    180     94     20
D1715V3, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1          14           164
  CLUS_2           3           180
  CLUS_3           7            94
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        5      3      8
  SON WILD-TYPE     82     77     92
D1715V4, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           5            82
  CLUS_2           3            77
  CLUS_3           8            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        6      7      9
  SON WILD-TYPE     83    153    129
D1715V5, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           6            83
  CLUS_2           7           153
  CLUS_3           9           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SON MUTATED        9      9      4
  SON WILD-TYPE    173    124     68
D1715V6, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           9           173
  CLUS_2           9           124
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        4      7      6      7
  SON WILD-TYPE    108     89     86    179
D1715V7, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           4           108
  CLUS_2           7            89
  CLUS_3           6            86
  CLUS_4           7           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SON MUTATED        4      3      6      0      2      3      6
  SON WILD-TYPE     56     47     43     40     61    122     93
D1715V8, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           4            56
  CLUS_2           3            47
  CLUS_3           6            43
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           3           122
  CLUS_7           6            93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        8      2      1     12
  SON WILD-TYPE    122     76     67    184
D1715V9, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           8           122
  CLUS_2           2            76
  CLUS_3           1            67
  CLUS_4          12           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SON MUTATED        2      2      1      3      9      1      2      1      2
  SON WILD-TYPE     38     60     27     77     60     47     41     27     72
D1715V10, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           1            27
  CLUS_4           3            77
  CLUS_5           9            60
  CLUS_6           1            47
  CLUS_7           2            41
  CLUS_8           1            27
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        0      0      0      4
  SON WILD-TYPE     33     31     27     15
D1715V11, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           4            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SON MUTATED        2      0      2      0
  SON WILD-TYPE     52     10     22     22
D1715V12, multiclass
        clus
vv       SON MUTATED SON WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1716) Variable = ATP6V0A4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        2      0      1      3
  ATP6V0A4 WILD-TYPE     44     58     63     40
D1716V1, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V0A4 MUTATED        2      2      2
  ATP6V0A4 WILD-TYPE     49     81     75
D1716V2, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED       12      1      0      0
  ATP6V0A4 WILD-TYPE    166    182    101     20
D1716V3, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1               12                166
  CLUS_2                1                182
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V0A4 MUTATED        3      0      4
  ATP6V0A4 WILD-TYPE     84     80     96
D1716V4, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V0A4 MUTATED        1      5      4
  ATP6V0A4 WILD-TYPE     88    155    134
D1716V5, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                5                155
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V0A4 MUTATED        5      3      2
  ATP6V0A4 WILD-TYPE    177    130     70
D1716V6, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                3                130
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        1      2      5      5
  ATP6V0A4 WILD-TYPE    111     94     87    181
D1716V7, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                 94
  CLUS_3                5                 87
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP6V0A4 MUTATED        1      0      5      1      1      2      3
  ATP6V0A4 WILD-TYPE     59     50     44     39     62    123     96
D1716V8, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                5                 44
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                2                123
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        3      3      0      6
  ATP6V0A4 WILD-TYPE    127     75     68    190
D1716V9, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                3                 75
  CLUS_3                0                 68
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP6V0A4 MUTATED        2      4      1      1      3      1      0      0
  ATP6V0A4 WILD-TYPE     38     58     27     79     66     47     43     28
                    vv
clus                 CLUS_9
  ATP6V0A4 MUTATED        0
  ATP6V0A4 WILD-TYPE     74
D1716V10, multiclass
        clus
vv       ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                4                 58
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                3                 66
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        0      0      0      1
  ATP6V0A4 WILD-TYPE     33     31     27     18
D1716V11, multiclass
[1] "Remove cluster labels:" "ATP6V0A4 MUTATED"      
clus
  ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6719         TCGA-CI-6619 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-G5-6641 
"ATP6V0A4 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V0A4 MUTATED        1      0      0      0
  ATP6V0A4 WILD-TYPE     53     10     24     22
D1716V12, multiclass
[1] "Remove cluster labels:" "ATP6V0A4 MUTATED"      
clus
  ATP6V0A4 MUTATED ATP6V0A4 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6719         TCGA-CI-6619 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" "ATP6V0A4 WILD-TYPE" 
        TCGA-G5-6641 
"ATP6V0A4 WILD-TYPE" 

Clustering(1717) Variable = CACNA1D MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        1      0      0      3
  CACNA1D WILD-TYPE     45     58     64     40
D1717V1, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        1      1      2
  CACNA1D WILD-TYPE     50     82     75
D1717V2, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED       21      1      1      0
  CACNA1D WILD-TYPE    157    182    100     20
D1717V3, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1              21               157
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        7      0     10
  CACNA1D WILD-TYPE     80     80     90
D1717V4, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               7                80
  CLUS_2               0                80
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        2      8     10
  CACNA1D WILD-TYPE     87    152    128
D1717V5, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               2                87
  CLUS_2               8               152
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        9      9      2
  CACNA1D WILD-TYPE    173    124     70
D1717V6, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               9               173
  CLUS_2               9               124
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        0      8      9      6
  CACNA1D WILD-TYPE    112     88     83    180
D1717V7, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               0               112
  CLUS_2               8                88
  CLUS_3               9                83
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CACNA1D MUTATED        1      3     13      0      1      1      4
  CACNA1D WILD-TYPE     59     47     36     40     62    124     95
D1717V8, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3              13                36
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        9      5      0      8
  CACNA1D WILD-TYPE    121     73     68    188
D1717V9, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               9               121
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CACNA1D MUTATED        0      8      3      1      9      0      0      0
  CACNA1D WILD-TYPE     40     54     25     79     60     48     43     28
                   vv
clus                CLUS_9
  CACNA1D MUTATED        1
  CACNA1D WILD-TYPE     73
D1717V10, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               0                40
  CLUS_2               8                54
  CLUS_3               3                25
  CLUS_4               1                79
  CLUS_5               9                60
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        2      0      0      7
  CACNA1D WILD-TYPE     31     31     27     12
D1717V11, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        5      0      4      0
  CACNA1D WILD-TYPE     49     10     20     22
D1717V12, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               5                49
  CLUS_2               0                10
  CLUS_3               4                20
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1718) Variable = RCOR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        0      0      0      1
  RCOR1 WILD-TYPE     46     58     64     42
D1718V1, multiclass
[1] "Remove cluster labels:" "RCOR1 MUTATED"         
clus
  RCOR1 MUTATED RCOR1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR1 MUTATED        0      0      1
  RCOR1 WILD-TYPE     51     83     76
D1718V2, multiclass
[1] "Remove cluster labels:" "RCOR1 MUTATED"         
clus
  RCOR1 MUTATED RCOR1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"RCOR1 WILD-TYPE" "RCOR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        4      0      0      0
  RCOR1 WILD-TYPE    174    183    101     20
D1718V3, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR1 MUTATED        0      0      3
  RCOR1 WILD-TYPE     87     80     97
D1718V4, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR1 MUTATED        0      2      1
  RCOR1 WILD-TYPE     89    158    137
D1718V5, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR1 MUTATED        1      2      0
  RCOR1 WILD-TYPE    181    131     72
D1718V6, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        1      1      1      1
  RCOR1 WILD-TYPE    111     95     91    185
D1718V7, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RCOR1 MUTATED        2      0      2      0      0      0      0
  RCOR1 WILD-TYPE     58     50     47     40     63    125     99
D1718V8, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        2      1      0      1
  RCOR1 WILD-TYPE    128     77     68    195
D1718V9, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RCOR1 MUTATED        0      1      0      0      2      1      0      0
  RCOR1 WILD-TYPE     40     61     28     80     67     47     43     28
                 vv
clus              CLUS_9
  RCOR1 MUTATED        0
  RCOR1 WILD-TYPE     74
D1718V10, multiclass
        clus
vv       RCOR1 MUTATED RCOR1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        0      0      0      0
  RCOR1 WILD-TYPE     33     31     27     19
D1718V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR1 MUTATED        0      0      0      0
  RCOR1 WILD-TYPE     54     10     24     22
D1718V12, multiclass

Clustering(1719) Variable = ZNF286B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286B MUTATED        0      0      0      0
  ZNF286B WILD-TYPE     46     58     64     43
D1719V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286B MUTATED        0      0      0
  ZNF286B WILD-TYPE     51     83     77
D1719V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286B MUTATED        4      1      0      0
  ZNF286B WILD-TYPE    174    182    101     20
D1719V3, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286B MUTATED        3      1      1
  ZNF286B WILD-TYPE     84     79     99
D1719V4, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286B MUTATED        2      1      2
  ZNF286B WILD-TYPE     87    159    136
D1719V5, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               1               159
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF286B MUTATED        2      2      1
  ZNF286B WILD-TYPE    180    131     71
D1719V6, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286B MUTATED        1      1      2      1
  ZNF286B WILD-TYPE    111     95     90    185
D1719V7, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF286B MUTATED        0      1      1      0      2      0      1
  ZNF286B WILD-TYPE     60     49     48     40     61    125     98
D1719V8, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286B MUTATED        1      2      0      2
  ZNF286B WILD-TYPE    129     76     68    194
D1719V9, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               1               129
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF286B MUTATED        0      2      0      0      1      0      0      0
  ZNF286B WILD-TYPE     40     60     28     80     68     48     43     28
                   vv
clus                CLUS_9
  ZNF286B MUTATED        2
  ZNF286B WILD-TYPE     72
D1719V10, multiclass
        clus
vv       ZNF286B MUTATED ZNF286B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286B MUTATED        0      0      0      1
  ZNF286B WILD-TYPE     33     31     27     18
D1719V11, multiclass
[1] "Remove cluster labels:" "ZNF286B MUTATED"       
clus
  ZNF286B MUTATED ZNF286B WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-G5-6641 
"ZNF286B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF286B MUTATED        1      0      0      0
  ZNF286B WILD-TYPE     53     10     24     22
D1719V12, multiclass
[1] "Remove cluster labels:" "ZNF286B MUTATED"       
clus
  ZNF286B MUTATED ZNF286B WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" "ZNF286B WILD-TYPE" 
       TCGA-G5-6641 
"ZNF286B WILD-TYPE" 

Clustering(1720) Variable = SPATA16 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA16 MUTATED        3      1      0      3
  SPATA16 WILD-TYPE     43     57     64     40
D1720V1, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA16 MUTATED        5      1      1
  SPATA16 WILD-TYPE     46     82     76
D1720V2, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA16 MUTATED        9      1      2      0
  SPATA16 WILD-TYPE    169    182     99     20
D1720V3, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA16 MUTATED        3      1      1
  SPATA16 WILD-TYPE     84     79     99
D1720V4, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA16 MUTATED        0      5      5
  SPATA16 WILD-TYPE     89    155    133
D1720V5, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA16 MUTATED        5      4      1
  SPATA16 WILD-TYPE    177    129     71
D1720V6, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA16 MUTATED        1      2      2      7
  SPATA16 WILD-TYPE    111     94     90    179
D1720V7, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPATA16 MUTATED        1      0      2      0      2      1      6
  SPATA16 WILD-TYPE     59     50     47     40     61    124     93
D1720V8, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA16 MUTATED        2      2      2      4
  SPATA16 WILD-TYPE    128     76     66    192
D1720V9, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPATA16 MUTATED        0      1      2      1      5      0      0      0
  SPATA16 WILD-TYPE     40     61     26     79     64     48     43     28
                   vv
clus                CLUS_9
  SPATA16 MUTATED        1
  SPATA16 WILD-TYPE     73
D1720V10, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA16 MUTATED        0      1      0      2
  SPATA16 WILD-TYPE     33     30     27     17
D1720V11, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA16 MUTATED        1      0      2      0
  SPATA16 WILD-TYPE     53     10     22     22
D1720V12, multiclass
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1721) Variable = OR1L1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L1 MUTATED        1      0      0      1
  OR1L1 WILD-TYPE     45     58     64     42
D1721V1, multiclass
[1] "Remove cluster labels:" "OR1L1 MUTATED"         
clus
  OR1L1 MUTATED OR1L1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AY-4071 
"OR1L1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1L1 MUTATED        0      1      1
  OR1L1 WILD-TYPE     51     82     76
D1721V2, multiclass
[1] "Remove cluster labels:" "OR1L1 MUTATED"         
clus
  OR1L1 MUTATED OR1L1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AY-4071 
"OR1L1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L1 MUTATED        4      2      1      1
  OR1L1 WILD-TYPE    174    181    100     19
D1721V3, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1L1 MUTATED        2      1      3
  OR1L1 WILD-TYPE     85     79     97
D1721V4, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1L1 MUTATED        0      3      3
  OR1L1 WILD-TYPE     89    157    135
D1721V5, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1L1 MUTATED        4      1      1
  OR1L1 WILD-TYPE    178    132     71
D1721V6, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L1 MUTATED        0      4      3      1
  OR1L1 WILD-TYPE    112     92     89    185
D1721V7, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR1L1 MUTATED        0      1      0      2      3      1      1
  OR1L1 WILD-TYPE     60     49     49     38     60    124     98
D1721V8, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L1 MUTATED        2      2      2      2
  OR1L1 WILD-TYPE    128     76     66    194
D1721V9, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR1L1 MUTATED        1      3      0      2      0      0      2      0
  OR1L1 WILD-TYPE     39     59     28     78     69     48     41     28
                 vv
clus              CLUS_9
  OR1L1 MUTATED        0
  OR1L1 WILD-TYPE     74
D1721V10, multiclass
        clus
vv       OR1L1 MUTATED OR1L1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L1 MUTATED        0      2      0      0
  OR1L1 WILD-TYPE     33     29     27     19
D1721V11, multiclass
[1] "Remove cluster labels:" "OR1L1 MUTATED"         
clus
  OR1L1 MUTATED OR1L1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L1 MUTATED        1      1      0      0
  OR1L1 WILD-TYPE     53      9     24     22
D1721V12, multiclass
[1] "Remove cluster labels:" "OR1L1 MUTATED"         
clus
  OR1L1 MUTATED OR1L1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" "OR1L1 WILD-TYPE" 

Clustering(1722) Variable = CCDC55 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        2      0      0      0
  CCDC55 WILD-TYPE     44     58     64     43
D1722V1, multiclass
[1] "Remove cluster labels:" "CCDC55 MUTATED"        
clus
  CCDC55 MUTATED CCDC55 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00D 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AY-4071 
"CCDC55 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC55 MUTATED        2      0      0
  CCDC55 WILD-TYPE     49     83     77
D1722V2, multiclass
[1] "Remove cluster labels:" "CCDC55 MUTATED"        
clus
  CCDC55 MUTATED CCDC55 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00D 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" "CCDC55 WILD-TYPE" 
      TCGA-AY-4071 
"CCDC55 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        7      2      3      1
  CCDC55 WILD-TYPE    171    181     98     19
D1722V3, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC55 MUTATED        6      1      4
  CCDC55 WILD-TYPE     81     79     96
D1722V4, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC55 MUTATED        0      3      5
  CCDC55 WILD-TYPE     89    157    133
D1722V5, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC55 MUTATED        4      3      1
  CCDC55 WILD-TYPE    178    130     71
D1722V6, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        2      6      3      2
  CCDC55 WILD-TYPE    110     90     89    184
D1722V7, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC55 MUTATED        1      3      5      0      2      0      2
  CCDC55 WILD-TYPE     59     47     44     40     61    125     97
D1722V8, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        7      2      0      3
  CCDC55 WILD-TYPE    123     76     68    193
D1722V9, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC55 MUTATED        2      2      1      0      4      1      1      0
  CCDC55 WILD-TYPE     38     60     27     80     65     47     42     28
                  vv
clus               CLUS_9
  CCDC55 MUTATED        1
  CCDC55 WILD-TYPE     73
D1722V10, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        1      1      0      1
  CCDC55 WILD-TYPE     32     30     27     18
D1722V11, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC55 MUTATED        2      0      1      0
  CCDC55 WILD-TYPE     52     10     23     22
D1722V12, multiclass
        clus
vv       CCDC55 MUTATED CCDC55 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1723) Variable = AASDH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASDH MUTATED        1      1      0      2
  AASDH WILD-TYPE     45     57     64     41
D1723V1, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AASDH MUTATED        2      1      1
  AASDH WILD-TYPE     49     82     76
D1723V2, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASDH MUTATED       10      6      5      0
  AASDH WILD-TYPE    168    177     96     20
D1723V3, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1            10             168
  CLUS_2             6             177
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AASDH MUTATED        6      3      8
  AASDH WILD-TYPE     81     77     92
D1723V4, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AASDH MUTATED        5      6      8
  AASDH WILD-TYPE     84    154    130
D1723V5, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             5              84
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AASDH MUTATED        8      8      3
  AASDH WILD-TYPE    174    125     69
D1723V6, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             8             174
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASDH MUTATED        5      6      6      4
  AASDH WILD-TYPE    107     90     86    182
D1723V7, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AASDH MUTATED        2      4      3      3      6      1      2
  AASDH WILD-TYPE     58     46     46     37     57    124     97
D1723V8, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             6              57
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASDH MUTATED        7      5      3      5
  AASDH WILD-TYPE    123     73     65    191
D1723V9, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             7             123
  CLUS_2             5              73
  CLUS_3             3              65
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AASDH MUTATED        2      5      2      5      4      0      1      0
  AASDH WILD-TYPE     38     57     26     75     65     48     42     28
                 vv
clus              CLUS_9
  AASDH MUTATED        1
  AASDH WILD-TYPE     73
D1723V10, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASDH MUTATED        0      3      3      2
  AASDH WILD-TYPE     33     28     24     17
D1723V11, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             3              24
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AASDH MUTATED        3      1      3      1
  AASDH WILD-TYPE     51      9     21     21
D1723V12, multiclass
        clus
vv       AASDH MUTATED AASDH WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             3              21
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1724) Variable = CTSA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        1      0      1      1
  CTSA WILD-TYPE     45     58     63     42
D1724V1, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        1      2      0
  CTSA WILD-TYPE     50     81     77
D1724V2, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        5      0      1      0
  CTSA WILD-TYPE    173    183    100     20
D1724V3, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        1      0      2
  CTSA WILD-TYPE     86     80     98
D1724V4, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        0      1      4
  CTSA WILD-TYPE     89    159    134
D1724V5, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        4      1      0
  CTSA WILD-TYPE    178    132     72
D1724V6, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            4            178
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        0      2      1      3
  CTSA WILD-TYPE    112     94     91    183
D1724V7, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTSA MUTATED        0      0      3      0      0      1      2
  CTSA WILD-TYPE     60     50     46     40     63    124     97
D1724V8, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        2      1      0      3
  CTSA WILD-TYPE    128     77     68    193
D1724V9, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CTSA MUTATED        0      1      1      0      1      0      1      1      1
  CTSA WILD-TYPE     40     61     27     80     68     48     42     27     73
D1724V10, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        0      0      0      0
  CTSA WILD-TYPE     33     31     27     19
D1724V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        0      0      0      0
  CTSA WILD-TYPE     54     10     24     22
D1724V12, multiclass

Clustering(1725) Variable = ALAS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALAS1 MUTATED        1      0      0      2
  ALAS1 WILD-TYPE     45     58     64     41
D1725V1, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALAS1 MUTATED        2      1      0
  ALAS1 WILD-TYPE     49     82     77
D1725V2, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALAS1 MUTATED        8      1      0      1
  ALAS1 WILD-TYPE    170    182    101     19
D1725V3, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALAS1 MUTATED        1      1      4
  ALAS1 WILD-TYPE     86     79     96
D1725V4, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALAS1 MUTATED        1      2      3
  ALAS1 WILD-TYPE     88    158    135
D1725V5, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALAS1 MUTATED        3      3      0
  ALAS1 WILD-TYPE    179    130     72
D1725V6, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALAS1 MUTATED        1      3      2      4
  ALAS1 WILD-TYPE    111     93     90    182
D1725V7, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALAS1 MUTATED        2      0      3      0      0      0      5
  ALAS1 WILD-TYPE     58     50     46     40     63    125     94
D1725V8, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALAS1 MUTATED        3      1      0      6
  ALAS1 WILD-TYPE    127     77     68    190
D1725V9, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ALAS1 MUTATED        0      1      1      1      6      1      0      0
  ALAS1 WILD-TYPE     40     61     27     79     63     47     43     28
                 vv
clus              CLUS_9
  ALAS1 MUTATED        0
  ALAS1 WILD-TYPE     74
D1725V10, multiclass
        clus
vv       ALAS1 MUTATED ALAS1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALAS1 MUTATED        0      0      0      0
  ALAS1 WILD-TYPE     33     31     27     19
D1725V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALAS1 MUTATED        0      0      0      0
  ALAS1 WILD-TYPE     54     10     24     22
D1725V12, multiclass

Clustering(1726) Variable = DDX55 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX55 MUTATED        1      1      0      1
  DDX55 WILD-TYPE     45     57     64     42
D1726V1, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX55 MUTATED        2      1      0
  DDX55 WILD-TYPE     49     82     77
D1726V2, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX55 MUTATED        8      1      2      0
  DDX55 WILD-TYPE    170    182     99     20
D1726V3, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX55 MUTATED        2      0      6
  DDX55 WILD-TYPE     85     80     94
D1726V4, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX55 MUTATED        1      4      4
  DDX55 WILD-TYPE     88    156    134
D1726V5, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX55 MUTATED        4      3      2
  DDX55 WILD-TYPE    178    130     70
D1726V6, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX55 MUTATED        1      4      3      3
  DDX55 WILD-TYPE    111     92     89    183
D1726V7, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX55 MUTATED        1      0      4      0      2      1      3
  DDX55 WILD-TYPE     59     50     45     40     61    124     96
D1726V8, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX55 MUTATED        5      2      0      4
  DDX55 WILD-TYPE    125     76     68    192
D1726V9, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX55 MUTATED        1      2      1      0      5      2      0      0
  DDX55 WILD-TYPE     39     60     27     80     64     46     43     28
                 vv
clus              CLUS_9
  DDX55 MUTATED        0
  DDX55 WILD-TYPE     74
D1726V10, multiclass
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX55 MUTATED        0      0      0      1
  DDX55 WILD-TYPE     33     31     27     18
D1726V11, multiclass
[1] "Remove cluster labels:" "DDX55 MUTATED"         
clus
  DDX55 MUTATED DDX55 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-G5-6641 
"DDX55 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX55 MUTATED        0      0      1      0
  DDX55 WILD-TYPE     54     10     23     22
D1726V12, multiclass
[1] "Remove cluster labels:" "DDX55 MUTATED"         
clus
  DDX55 MUTATED DDX55 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-G5-6641 
"DDX55 WILD-TYPE" 

Clustering(1727) Variable = SFRP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRP2 MUTATED        1      1      0      1
  SFRP2 WILD-TYPE     45     57     64     42
D1727V1, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SFRP2 MUTATED        0      2      1
  SFRP2 WILD-TYPE     51     81     76
D1727V2, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRP2 MUTATED        5      5      0      0
  SFRP2 WILD-TYPE    173    178    101     20
D1727V3, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SFRP2 MUTATED        4      3      1
  SFRP2 WILD-TYPE     83     77     99
D1727V4, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SFRP2 MUTATED        2      2      4
  SFRP2 WILD-TYPE     87    158    134
D1727V5, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SFRP2 MUTATED        4      1      3
  SFRP2 WILD-TYPE    178    132     69
D1727V6, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRP2 MUTATED        3      2      3      2
  SFRP2 WILD-TYPE    109     94     89    184
D1727V7, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRP2 MUTATED        1      1      3      2      1      2      0
  SFRP2 WILD-TYPE     59     49     46     38     62    123     99
D1727V8, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRP2 MUTATED        4      3      0      3
  SFRP2 WILD-TYPE    126     75     68    193
D1727V9, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SFRP2 MUTATED        2      3      0      1      2      0      1      1
  SFRP2 WILD-TYPE     38     59     28     79     67     48     42     27
                 vv
clus              CLUS_9
  SFRP2 MUTATED        0
  SFRP2 WILD-TYPE     74
D1727V10, multiclass
        clus
vv       SFRP2 MUTATED SFRP2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRP2 MUTATED        1      0      0      1
  SFRP2 WILD-TYPE     32     31     27     18
D1727V11, multiclass
[1] "Remove cluster labels:" "SFRP2 MUTATED"         
clus
  SFRP2 MUTATED SFRP2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRP2 MUTATED        2      0      0      0
  SFRP2 WILD-TYPE     52     10     24     22
D1727V12, multiclass
[1] "Remove cluster labels:" "SFRP2 MUTATED"         
clus
  SFRP2 MUTATED SFRP2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" "SFRP2 WILD-TYPE" 

Clustering(1728) Variable = IGSF5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF5 MUTATED        4      2      0      2
  IGSF5 WILD-TYPE     42     56     64     41
D1728V1, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF5 MUTATED        4      3      1
  IGSF5 WILD-TYPE     47     80     76
D1728V2, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             3              80
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF5 MUTATED       11      2      0      1
  IGSF5 WILD-TYPE    167    181    101     19
D1728V3, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF5 MUTATED        2      0      5
  IGSF5 WILD-TYPE     85     80     95
D1728V4, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF5 MUTATED        2      4      6
  IGSF5 WILD-TYPE     87    156    132
D1728V5, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF5 MUTATED        6      5      1
  IGSF5 WILD-TYPE    176    128     71
D1728V6, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF5 MUTATED        1      5      2      7
  IGSF5 WILD-TYPE    111     91     90    179
D1728V7, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGSF5 MUTATED        1      1      2      2      1      3      5
  IGSF5 WILD-TYPE     59     49     47     38     62    122     94
D1728V8, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF5 MUTATED        4      1      0      8
  IGSF5 WILD-TYPE    126     77     68    188
D1728V9, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IGSF5 MUTATED        1      1      0      4      6      0      1      0
  IGSF5 WILD-TYPE     39     61     28     76     63     48     42     28
                 vv
clus              CLUS_9
  IGSF5 MUTATED        0
  IGSF5 WILD-TYPE     74
D1728V10, multiclass
        clus
vv       IGSF5 MUTATED IGSF5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             4              76
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF5 MUTATED        0      1      0      1
  IGSF5 WILD-TYPE     33     30     27     18
D1728V11, multiclass
[1] "Remove cluster labels:" "IGSF5 MUTATED"         
clus
  IGSF5 MUTATED IGSF5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF5 MUTATED        2      0      0      0
  IGSF5 WILD-TYPE     52     10     24     22
D1728V12, multiclass
[1] "Remove cluster labels:" "IGSF5 MUTATED"         
clus
  IGSF5 MUTATED IGSF5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" "IGSF5 WILD-TYPE" 

Clustering(1729) Variable = MFRP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        1      0      1      0
  MFRP WILD-TYPE     45     58     63     43
D1729V1, multiclass
[1] "Remove cluster labels:" "MFRP MUTATED"          
clus
  MFRP MUTATED MFRP WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3837 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AY-4071 
"MFRP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED        1      0      1
  MFRP WILD-TYPE     50     83     76
D1729V2, multiclass
[1] "Remove cluster labels:" "MFRP MUTATED"          
clus
  MFRP MUTATED MFRP WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3837 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" "MFRP WILD-TYPE" 
    TCGA-AY-4071 
"MFRP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED       11      0      1      0
  MFRP WILD-TYPE    167    183    100     20
D1729V3, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1           11            167
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED        6      0      4
  MFRP WILD-TYPE     81     80     96
D1729V4, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            6             81
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED        1      3      7
  MFRP WILD-TYPE     88    157    131
D1729V5, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED        6      4      1
  MFRP WILD-TYPE    176    129     71
D1729V6, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            6            176
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        1      5      4      2
  MFRP WILD-TYPE    111     91     88    184
D1729V7, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            4             88
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MFRP MUTATED        0      2      5      0      3      1      1
  MFRP WILD-TYPE     60     48     44     40     60    124     98
D1729V8, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        7      2      1      2
  MFRP WILD-TYPE    123     76     67    194
D1729V9, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            7            123
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MFRP MUTATED        3      4      0      0      2      1      1      1      0
  MFRP WILD-TYPE     37     58     28     80     67     47     42     27     74
D1729V10, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        0      1      1      1
  MFRP WILD-TYPE     33     30     26     18
D1729V11, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        1      0      1      1
  MFRP WILD-TYPE     53     10     23     21
D1729V12, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1730) Variable = PIGN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGN MUTATED        2      0      0      1
  PIGN WILD-TYPE     44     58     64     42
D1730V1, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGN MUTATED        2      0      1
  PIGN WILD-TYPE     49     83     76
D1730V2, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGN MUTATED        6      0      2      1
  PIGN WILD-TYPE    172    183     99     19
D1730V3, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGN MUTATED        4      1      1
  PIGN WILD-TYPE     83     79     99
D1730V4, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGN MUTATED        1      3      3
  PIGN WILD-TYPE     88    157    135
D1730V5, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGN MUTATED        4      2      1
  PIGN WILD-TYPE    178    131     71
D1730V6, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGN MUTATED        1      1      4      3
  PIGN WILD-TYPE    111     95     88    183
D1730V7, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIGN MUTATED        2      0      4      0      1      0      2
  PIGN WILD-TYPE     58     50     45     40     62    125     97
D1730V8, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGN MUTATED        3      3      0      3
  PIGN WILD-TYPE    127     75     68    193
D1730V9, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PIGN MUTATED        0      3      1      2      3      0      0      0      0
  PIGN WILD-TYPE     40     59     27     78     66     48     43     28     74
D1730V10, multiclass
        clus
vv       PIGN MUTATED PIGN WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGN MUTATED        2      0      0      0
  PIGN WILD-TYPE     31     31     27     19
D1730V11, multiclass
[1] "Remove cluster labels:" "PIGN MUTATED"          
clus
  PIGN MUTATED PIGN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGN MUTATED        2      0      0      0
  PIGN WILD-TYPE     52     10     24     22
D1730V12, multiclass
[1] "Remove cluster labels:" "PIGN MUTATED"          
clus
  PIGN MUTATED PIGN WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" "PIGN WILD-TYPE" 

Clustering(1731) Variable = TPK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPK1 MUTATED        0      0      0      1
  TPK1 WILD-TYPE     46     58     64     42
D1731V1, multiclass
[1] "Remove cluster labels:" "TPK1 MUTATED"          
clus
  TPK1 MUTATED TPK1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPK1 MUTATED        0      0      1
  TPK1 WILD-TYPE     51     83     76
D1731V2, multiclass
[1] "Remove cluster labels:" "TPK1 MUTATED"          
clus
  TPK1 MUTATED TPK1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TPK1 WILD-TYPE" "TPK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPK1 MUTATED        3      2      2      1
  TPK1 WILD-TYPE    175    181     99     19
D1731V3, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPK1 MUTATED        1      1      5
  TPK1 WILD-TYPE     86     79     95
D1731V4, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPK1 MUTATED        0      3      2
  TPK1 WILD-TYPE     89    157    136
D1731V5, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TPK1 MUTATED        1      3      1
  TPK1 WILD-TYPE    181    130     71
D1731V6, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPK1 MUTATED        1      4      2      1
  TPK1 WILD-TYPE    111     92     90    185
D1731V7, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPK1 MUTATED        1      3      1      1      2      0      0
  TPK1 WILD-TYPE     59     47     48     39     61    125     99
D1731V8, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPK1 MUTATED        2      2      2      2
  TPK1 WILD-TYPE    128     76     66    194
D1731V9, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TPK1 MUTATED        1      1      1      2      1      0      2      0      0
  TPK1 WILD-TYPE     39     61     27     78     68     48     41     28     74
D1731V10, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPK1 MUTATED        1      0      1      1
  TPK1 WILD-TYPE     32     31     26     18
D1731V11, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPK1 MUTATED        2      0      1      0
  TPK1 WILD-TYPE     52     10     23     22
D1731V12, multiclass
        clus
vv       TPK1 MUTATED TPK1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1732) Variable = IGFN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFN1 MUTATED        4      0      0      0
  IGFN1 WILD-TYPE     42     58     64     43
D1732V1, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGFN1 MUTATED        3      1      0
  IGFN1 WILD-TYPE     48     82     77
D1732V2, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFN1 MUTATED       11      2      2      1
  IGFN1 WILD-TYPE    167    181     99     19
D1732V3, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGFN1 MUTATED        3      1      9
  IGFN1 WILD-TYPE     84     79     91
D1732V4, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGFN1 MUTATED        2      6      8
  IGFN1 WILD-TYPE     87    154    130
D1732V5, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGFN1 MUTATED        8      6      2
  IGFN1 WILD-TYPE    174    127     70
D1732V6, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFN1 MUTATED        1      9      2      5
  IGFN1 WILD-TYPE    111     87     90    181
D1732V7, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             9              87
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGFN1 MUTATED        1      2      8      0      1      2      3
  IGFN1 WILD-TYPE     59     48     41     40     62    123     96
D1732V8, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFN1 MUTATED        8      2      0      6
  IGFN1 WILD-TYPE    122     76     68    190
D1732V9, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IGFN1 MUTATED        1      2      2      1      7      1      0      1
  IGFN1 WILD-TYPE     39     60     26     79     62     47     43     27
                 vv
clus              CLUS_9
  IGFN1 MUTATED        1
  IGFN1 WILD-TYPE     73
D1732V10, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFN1 MUTATED        0      0      0      3
  IGFN1 WILD-TYPE     33     31     27     16
D1732V11, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFN1 MUTATED        1      0      1      1
  IGFN1 WILD-TYPE     53     10     23     21
D1732V12, multiclass
        clus
vv       IGFN1 MUTATED IGFN1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1733) Variable = GRK5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK5 MUTATED        1      0      2      2
  GRK5 WILD-TYPE     45     58     62     41
D1733V1, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK5 MUTATED        2      0      3
  GRK5 WILD-TYPE     49     83     74
D1733V2, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK5 MUTATED        7      0      5      0
  GRK5 WILD-TYPE    171    183     96     20
D1733V3, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            0            183
  CLUS_3            5             96
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK5 MUTATED        4      1      2
  GRK5 WILD-TYPE     83     79     98
D1733V4, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK5 MUTATED        0      5      5
  GRK5 WILD-TYPE     89    155    133
D1733V5, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK5 MUTATED        6      3      1
  GRK5 WILD-TYPE    176    130     71
D1733V6, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK5 MUTATED        2      2      3      5
  GRK5 WILD-TYPE    110     94     89    181
D1733V7, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRK5 MUTATED        2      1      3      0      2      1      3
  GRK5 WILD-TYPE     58     49     46     40     61    124     96
D1733V8, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK5 MUTATED        5      3      0      4
  GRK5 WILD-TYPE    125     75     68    192
D1733V9, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GRK5 MUTATED        1      3      1      3      2      0      0      1      1
  GRK5 WILD-TYPE     39     59     27     77     67     48     43     27     73
D1733V10, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK5 MUTATED        0      1      0      0
  GRK5 WILD-TYPE     33     30     27     19
D1733V11, multiclass
[1] "Remove cluster labels:" "GRK5 MUTATED"          
clus
  GRK5 MUTATED GRK5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6653     TCGA-A6-6654 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-G5-6641 
"GRK5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK5 MUTATED        1      0      0      0
  GRK5 WILD-TYPE     53     10     24     22
D1733V12, multiclass
[1] "Remove cluster labels:" "GRK5 MUTATED"          
clus
  GRK5 MUTATED GRK5 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6653     TCGA-A6-6654 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-G5-6641 
"GRK5 WILD-TYPE" 

Clustering(1734) Variable = ZNF555 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF555 MUTATED        2      0      0      3
  ZNF555 WILD-TYPE     44     58     64     40
D1734V1, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF555 MUTATED        4      0      1
  ZNF555 WILD-TYPE     47     83     76
D1734V2, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF555 MUTATED        8      1      0      0
  ZNF555 WILD-TYPE    170    182    101     20
D1734V3, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF555 MUTATED        1      0      3
  ZNF555 WILD-TYPE     86     80     97
D1734V4, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF555 MUTATED        1      5      2
  ZNF555 WILD-TYPE     88    155    136
D1734V5, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF555 MUTATED        4      3      1
  ZNF555 WILD-TYPE    178    130     71
D1734V6, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF555 MUTATED        0      3      0      6
  ZNF555 WILD-TYPE    112     93     92    180
D1734V7, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              0               92
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF555 MUTATED        1      3      0      0      0      0      5
  ZNF555 WILD-TYPE     59     47     49     40     63    125     94
D1734V8, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF555 MUTATED        2      1      0      6
  ZNF555 WILD-TYPE    128     77     68    190
D1734V9, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF555 MUTATED        1      1      2      0      3      0      0      1
  ZNF555 WILD-TYPE     39     61     26     80     66     48     43     27
                  vv
clus               CLUS_9
  ZNF555 MUTATED        1
  ZNF555 WILD-TYPE     73
D1734V10, multiclass
        clus
vv       ZNF555 MUTATED ZNF555 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF555 MUTATED        0      0      0      0
  ZNF555 WILD-TYPE     33     31     27     19
D1734V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF555 MUTATED        0      0      0      0
  ZNF555 WILD-TYPE     54     10     24     22
D1734V12, multiclass

Clustering(1735) Variable = NRAP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAP MUTATED        3      0      0      4
  NRAP WILD-TYPE     43     58     64     39
D1735V1, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAP MUTATED        4      1      2
  NRAP WILD-TYPE     47     82     75
D1735V2, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAP MUTATED       20      3      3      1
  NRAP WILD-TYPE    158    180     98     19
D1735V3, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1           20            158
  CLUS_2            3            180
  CLUS_3            3             98
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAP MUTATED       12      1      7
  NRAP WILD-TYPE     75     79     93
D1735V4, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1           12             75
  CLUS_2            1             79
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAP MUTATED        2      7     11
  NRAP WILD-TYPE     87    153    127
D1735V5, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAP MUTATED       11      7      2
  NRAP WILD-TYPE    171    126     70
D1735V6, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1           11            171
  CLUS_2            7            126
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAP MUTATED        2     10      8      7
  NRAP WILD-TYPE    110     86     84    179
D1735V7, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            2            110
  CLUS_2           10             86
  CLUS_3            8             84
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAP MUTATED        3      4     10      1      2      2      5
  NRAP WILD-TYPE     57     46     39     39     61    123     94
D1735V8, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3           10             39
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAP MUTATED        9      7      1      9
  NRAP WILD-TYPE    121     71     67    187
D1735V9, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            9            121
  CLUS_2            7             71
  CLUS_3            1             67
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NRAP MUTATED        3      8      2      3      6      0      2      1      1
  NRAP WILD-TYPE     37     54     26     77     63     48     41     27     73
D1735V10, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            3             37
  CLUS_2            8             54
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAP MUTATED        2      0      1      2
  NRAP WILD-TYPE     31     31     26     17
D1735V11, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAP MUTATED        3      1      1      0
  NRAP WILD-TYPE     51      9     23     22
D1735V12, multiclass
        clus
vv       NRAP MUTATED NRAP WILD-TYPE
  CLUS_1            3             51
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1736) Variable = STAU1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        0      0      0      1
  STAU1 WILD-TYPE     46     58     64     42
D1736V1, multiclass
[1] "Remove cluster labels:" "STAU1 MUTATED"         
clus
  STAU1 MUTATED STAU1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU1 MUTATED        0      0      1
  STAU1 WILD-TYPE     51     83     76
D1736V2, multiclass
[1] "Remove cluster labels:" "STAU1 MUTATED"         
clus
  STAU1 MUTATED STAU1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"STAU1 WILD-TYPE" "STAU1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        7      4      0      0
  STAU1 WILD-TYPE    171    179    101     20
D1736V3, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU1 MUTATED        4      2      4
  STAU1 WILD-TYPE     83     78     96
D1736V4, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU1 MUTATED        3      3      5
  STAU1 WILD-TYPE     86    157    133
D1736V5, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU1 MUTATED        7      3      1
  STAU1 WILD-TYPE    175    130     71
D1736V6, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        4      2      4      1
  STAU1 WILD-TYPE    108     94     88    185
D1736V7, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAU1 MUTATED        3      2      2      3      1      0      0
  STAU1 WILD-TYPE     57     48     47     37     62    125     99
D1736V8, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        6      2      1      2
  STAU1 WILD-TYPE    124     76     67    194
D1736V9, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STAU1 MUTATED        2      3      1      2      2      1      0      0
  STAU1 WILD-TYPE     38     59     27     78     67     47     43     28
                 vv
clus              CLUS_9
  STAU1 MUTATED        0
  STAU1 WILD-TYPE     74
D1736V10, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        1      0      1      3
  STAU1 WILD-TYPE     32     31     26     16
D1736V11, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        3      0      1      1
  STAU1 WILD-TYPE     51     10     23     21
D1736V12, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1737) Variable = KIAA1919 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1919 MUTATED        1      0      0      1
  KIAA1919 WILD-TYPE     45     58     64     42
D1737V1, multiclass
[1] "Remove cluster labels:" "KIAA1919 MUTATED"      
clus
  KIAA1919 MUTATED KIAA1919 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2677 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1919 MUTATED        1      1      0
  KIAA1919 WILD-TYPE     50     82     77
D1737V2, multiclass
[1] "Remove cluster labels:" "KIAA1919 MUTATED"      
clus
  KIAA1919 MUTATED KIAA1919 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2677 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-2678         TCGA-A6-2683         TCGA-A6-3807 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-3808         TCGA-A6-3809         TCGA-A6-3810 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3514         TCGA-AA-3516         TCGA-AA-3517 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3696         TCGA-AA-3710 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3812 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1919 MUTATED        9      0      0      0
  KIAA1919 WILD-TYPE    169    183    101     20
D1737V3, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1919 MUTATED        4      0      3
  KIAA1919 WILD-TYPE     83     80     97
D1737V4, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1919 MUTATED        1      3      5
  KIAA1919 WILD-TYPE     88    157    133
D1737V5, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                3                157
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1919 MUTATED        4      5      0
  KIAA1919 WILD-TYPE    178    128     72
D1737V6, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                5                128
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1919 MUTATED        0      3      4      2
  KIAA1919 WILD-TYPE    112     93     88    184
D1737V7, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                4                 88
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1919 MUTATED        0      2      4      0      1      0      2
  KIAA1919 WILD-TYPE     60     48     45     40     62    125     97
D1737V8, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                2                 48
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1919 MUTATED        3      2      0      4
  KIAA1919 WILD-TYPE    127     76     68    192
D1737V9, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1919 MUTATED        1      3      1      0      3      0      0      0
  KIAA1919 WILD-TYPE     39     59     27     80     66     48     43     28
                    vv
clus                 CLUS_9
  KIAA1919 MUTATED        1
  KIAA1919 WILD-TYPE     73
D1737V10, multiclass
        clus
vv       KIAA1919 MUTATED KIAA1919 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1919 MUTATED        0      0      0      2
  KIAA1919 WILD-TYPE     33     31     27     17
D1737V11, multiclass
[1] "Remove cluster labels:" "KIAA1919 MUTATED"      
clus
  KIAA1919 MUTATED KIAA1919 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6719         TCGA-CI-6619 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6704 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1919 MUTATED        2      0      0      0
  KIAA1919 WILD-TYPE     52     10     24     22
D1737V12, multiclass
[1] "Remove cluster labels:" "KIAA1919 MUTATED"      
clus
  KIAA1919 MUTATED KIAA1919 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6719         TCGA-CI-6619 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6704 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" "KIAA1919 WILD-TYPE" 

Clustering(1738) Variable = CTCFL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCFL MUTATED        5      0      0      2
  CTCFL WILD-TYPE     41     58     64     41
D1738V1, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTCFL MUTATED        5      1      1
  CTCFL WILD-TYPE     46     82     76
D1738V2, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCFL MUTATED       13      0      1      1
  CTCFL WILD-TYPE    165    183    100     19
D1738V3, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1            13             165
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTCFL MUTATED        4      1      3
  CTCFL WILD-TYPE     83     79     97
D1738V4, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTCFL MUTATED        3      2      7
  CTCFL WILD-TYPE     86    158    131
D1738V5, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTCFL MUTATED        7      4      1
  CTCFL WILD-TYPE    175    129     71
D1738V6, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCFL MUTATED        2      3      3      8
  CTCFL WILD-TYPE    110     93     89    178
D1738V7, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTCFL MUTATED        2      2      3      0      1      1      7
  CTCFL WILD-TYPE     58     48     46     40     62    124     92
D1738V8, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCFL MUTATED        3      3      2      7
  CTCFL WILD-TYPE    127     75     66    189
D1738V9, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CTCFL MUTATED        2      2      2      2      4      0      1      2
  CTCFL WILD-TYPE     38     60     26     78     65     48     42     26
                 vv
clus              CLUS_9
  CTCFL MUTATED        0
  CTCFL WILD-TYPE     74
D1738V10, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCFL MUTATED        2      0      1      1
  CTCFL WILD-TYPE     31     31     26     18
D1738V11, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCFL MUTATED        3      0      0      1
  CTCFL WILD-TYPE     51     10     24     21
D1738V12, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1739) Variable = LRRC31 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC31 MUTATED        3      0      1      1
  LRRC31 WILD-TYPE     43     58     63     42
D1739V1, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC31 MUTATED        2      2      1
  LRRC31 WILD-TYPE     49     81     76
D1739V2, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC31 MUTATED        8      4      2      1
  LRRC31 WILD-TYPE    170    179     99     19
D1739V3, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC31 MUTATED        5      3      2
  LRRC31 WILD-TYPE     82     77     98
D1739V4, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              3               77
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC31 MUTATED        2      5      5
  LRRC31 WILD-TYPE     87    155    133
D1739V5, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC31 MUTATED        6      4      2
  LRRC31 WILD-TYPE    176    129     70
D1739V6, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC31 MUTATED        4      2      4      6
  LRRC31 WILD-TYPE    108     94     88    180
D1739V7, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRC31 MUTATED        4      0      4      2      1      2      3
  LRRC31 WILD-TYPE     56     50     45     38     62    123     96
D1739V8, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC31 MUTATED        6      3      1      6
  LRRC31 WILD-TYPE    124     75     67    190
D1739V9, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRC31 MUTATED        1      3      0      3      4      2      1      1
  LRRC31 WILD-TYPE     39     59     28     77     65     46     42     27
                  vv
clus               CLUS_9
  LRRC31 MUTATED        1
  LRRC31 WILD-TYPE     73
D1739V10, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC31 MUTATED        1      0      1      1
  LRRC31 WILD-TYPE     32     31     26     18
D1739V11, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC31 MUTATED        1      0      0      2
  LRRC31 WILD-TYPE     53     10     24     20
D1739V12, multiclass
        clus
vv       LRRC31 MUTATED LRRC31 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1740) Variable = RARG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARG MUTATED        2      1      1      2
  RARG WILD-TYPE     44     57     63     41
D1740V1, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RARG MUTATED        3      3      0
  RARG WILD-TYPE     48     80     77
D1740V2, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            3             48
  CLUS_2            3             80
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARG MUTATED        7      1      2      0
  RARG WILD-TYPE    171    182     99     20
D1740V3, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RARG MUTATED        0      1      3
  RARG WILD-TYPE     87     79     97
D1740V4, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RARG MUTATED        4      2      1
  RARG WILD-TYPE     85    158    137
D1740V5, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            4             85
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RARG MUTATED        3      2      2
  RARG WILD-TYPE    179    131     70
D1740V6, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARG MUTATED        2      3      0      5
  RARG WILD-TYPE    110     93     92    181
D1740V7, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RARG MUTATED        1      1      1      1      0      3      3
  RARG WILD-TYPE     59     49     48     39     63    122     96
D1740V8, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            3            122
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARG MUTATED        4      0      1      5
  RARG WILD-TYPE    126     78     67    191
D1740V9, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RARG MUTATED        2      0      1      2      3      1      0      0      1
  RARG WILD-TYPE     38     62     27     78     66     47     43     28     73
D1740V10, multiclass
        clus
vv       RARG MUTATED RARG WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARG MUTATED        0      0      0      1
  RARG WILD-TYPE     33     31     27     18
D1740V11, multiclass
[1] "Remove cluster labels:" "RARG MUTATED"          
clus
  RARG MUTATED RARG WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-G5-6641 
"RARG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RARG MUTATED        0      0      1      0
  RARG WILD-TYPE     54     10     23     22
D1740V12, multiclass
[1] "Remove cluster labels:" "RARG MUTATED"          
clus
  RARG MUTATED RARG WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" "RARG WILD-TYPE" 
    TCGA-G5-6641 
"RARG WILD-TYPE" 

Clustering(1741) Variable = SFRS2IP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED        5      1      0      2
  SFRS2IP WILD-TYPE     41     57     64     41
D1741V1, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SFRS2IP MUTATED        3      2      3
  SFRS2IP WILD-TYPE     48     81     74
D1741V2, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                81
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED       21      4      1      1
  SFRS2IP WILD-TYPE    157    179    100     19
D1741V3, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1              21               157
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SFRS2IP MUTATED        7      3      8
  SFRS2IP WILD-TYPE     80     77     92
D1741V4, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               7                80
  CLUS_2               3                77
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SFRS2IP MUTATED        5      7     10
  SFRS2IP WILD-TYPE     84    153    128
D1741V5, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               5                84
  CLUS_2               7               153
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SFRS2IP MUTATED       12      6      4
  SFRS2IP WILD-TYPE    170    127     68
D1741V6, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1              12               170
  CLUS_2               6               127
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED        4      9      6      8
  SFRS2IP WILD-TYPE    108     87     86    178
D1741V7, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               4               108
  CLUS_2               9                87
  CLUS_3               6                86
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRS2IP MUTATED        1      3     10      0      4      4      5
  SFRS2IP WILD-TYPE     59     47     39     40     59    121     94
D1741V8, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                59
  CLUS_2               3                47
  CLUS_3              10                39
  CLUS_4               0                40
  CLUS_5               4                59
  CLUS_6               4               121
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED       12      3      1     10
  SFRS2IP WILD-TYPE    118     75     67    186
D1741V9, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1              12               118
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4              10               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SFRS2IP MUTATED        2      5      3      3      5      2      1      2
  SFRS2IP WILD-TYPE     38     57     25     77     64     46     42     26
                   vv
clus                CLUS_9
  SFRS2IP MUTATED        3
  SFRS2IP WILD-TYPE     71
D1741V10, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                57
  CLUS_3               3                25
  CLUS_4               3                77
  CLUS_5               5                64
  CLUS_6               2                46
  CLUS_7               1                42
  CLUS_8               2                26
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED        1      0      0      4
  SFRS2IP WILD-TYPE     32     31     27     15
D1741V11, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2IP MUTATED        3      0      2      0
  SFRS2IP WILD-TYPE     51     10     22     22
D1741V12, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1742) Variable = TCTEX1D2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCTEX1D2 MUTATED        1      0      2      0
  TCTEX1D2 WILD-TYPE     45     58     62     43
D1742V1, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                2                 62
  CLUS_4                0                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TCTEX1D2 MUTATED        1      1      1
  TCTEX1D2 WILD-TYPE     50     82     76
D1742V2, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCTEX1D2 MUTATED        3      4      0      0
  TCTEX1D2 WILD-TYPE    175    179    101     20
D1742V3, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                4                179
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TCTEX1D2 MUTATED        1      2      1
  TCTEX1D2 WILD-TYPE     86     78     99
D1742V4, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                2                 78
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TCTEX1D2 MUTATED        2      2      2
  TCTEX1D2 WILD-TYPE     87    158    136
D1742V5, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                2                158
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TCTEX1D2 MUTATED        3      3      0
  TCTEX1D2 WILD-TYPE    179    130     72
D1742V6, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCTEX1D2 MUTATED        1      1      2      3
  TCTEX1D2 WILD-TYPE    111     95     90    183
D1742V7, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TCTEX1D2 MUTATED        1      0      1      0      2      1      2
  TCTEX1D2 WILD-TYPE     59     50     48     40     61    124     97
D1742V8, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCTEX1D2 MUTATED        1      2      1      2
  TCTEX1D2 WILD-TYPE    129     76     67    194
D1742V9, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TCTEX1D2 MUTATED        0      2      0      1      1      0      1      0
  TCTEX1D2 WILD-TYPE     40     60     28     79     68     48     42     28
                    vv
clus                 CLUS_9
  TCTEX1D2 MUTATED        1
  TCTEX1D2 WILD-TYPE     73
D1742V10, multiclass
        clus
vv       TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCTEX1D2 MUTATED        0      1      1      0
  TCTEX1D2 WILD-TYPE     33     30     26     19
D1742V11, multiclass
[1] "Remove cluster labels:" "TCTEX1D2 MUTATED"      
clus
  TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CL-5918 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1H8         TCGA-EI-6506 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCTEX1D2 MUTATED        1      0      1      0
  TCTEX1D2 WILD-TYPE     53     10     23     22
D1742V12, multiclass
[1] "Remove cluster labels:" "TCTEX1D2 MUTATED"      
clus
  TCTEX1D2 MUTATED TCTEX1D2 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CL-5918 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1H8         TCGA-EI-6506 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" "TCTEX1D2 WILD-TYPE" 

Clustering(1743) Variable = IKBKB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKB MUTATED        0      0      0      2
  IKBKB WILD-TYPE     46     58     64     41
D1743V1, multiclass
[1] "Remove cluster labels:" "IKBKB MUTATED"         
clus
  IKBKB MUTATED IKBKB WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AY-4071 
"IKBKB WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKB MUTATED        0      1      1
  IKBKB WILD-TYPE     51     82     76
D1743V2, multiclass
[1] "Remove cluster labels:" "IKBKB MUTATED"         
clus
  IKBKB MUTATED IKBKB WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" "IKBKB WILD-TYPE" 
     TCGA-AY-4071 
"IKBKB WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKB MUTATED        6      3      0      0
  IKBKB WILD-TYPE    172    180    101     20
D1743V3, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKB MUTATED        1      2      3
  IKBKB WILD-TYPE     86     78     97
D1743V4, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKB MUTATED        1      7      1
  IKBKB WILD-TYPE     88    153    137
D1743V5, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKB MUTATED        1      7      1
  IKBKB WILD-TYPE    181    126     71
D1743V6, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             1             181
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKB MUTATED        3      2      1      3
  IKBKB WILD-TYPE    109     94     91    183
D1743V7, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IKBKB MUTATED        4      1      0      0      1      1      2
  IKBKB WILD-TYPE     56     49     49     40     62    124     97
D1743V8, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKB MUTATED        3      2      1      3
  IKBKB WILD-TYPE    127     76     67    193
D1743V9, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IKBKB MUTATED        1      1      1      2      2      1      0      0
  IKBKB WILD-TYPE     39     61     27     78     67     47     43     28
                 vv
clus              CLUS_9
  IKBKB MUTATED        1
  IKBKB WILD-TYPE     73
D1743V10, multiclass
        clus
vv       IKBKB MUTATED IKBKB WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKB MUTATED        0      0      0      0
  IKBKB WILD-TYPE     33     31     27     19
D1743V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKB MUTATED        0      0      0      0
  IKBKB WILD-TYPE     54     10     24     22
D1743V12, multiclass

Clustering(1744) Variable = PPIL5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIL5 MUTATED        0      0      0      0
  PPIL5 WILD-TYPE     46     58     64     43
D1744V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPIL5 MUTATED        0      0      0
  PPIL5 WILD-TYPE     51     83     77
D1744V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIL5 MUTATED        2      2      0      0
  PPIL5 WILD-TYPE    176    181    101     20
D1744V3, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPIL5 MUTATED        0      2      1
  PPIL5 WILD-TYPE     87     78     99
D1744V4, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPIL5 MUTATED        2      1      1
  PPIL5 WILD-TYPE     87    159    137
D1744V5, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPIL5 MUTATED        2      2      0
  PPIL5 WILD-TYPE    180    131     72
D1744V6, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIL5 MUTATED        1      1      1      1
  PPIL5 WILD-TYPE    111     95     91    185
D1744V7, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPIL5 MUTATED        0      1      2      0      0      1      0
  PPIL5 WILD-TYPE     60     49     47     40     63    124     99
D1744V8, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIL5 MUTATED        1      1      0      2
  PPIL5 WILD-TYPE    129     77     68    194
D1744V9, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PPIL5 MUTATED        0      0      1      0      1      0      0      2
  PPIL5 WILD-TYPE     40     62     27     80     68     48     43     26
                 vv
clus              CLUS_9
  PPIL5 MUTATED        0
  PPIL5 WILD-TYPE     74
D1744V10, multiclass
        clus
vv       PPIL5 MUTATED PPIL5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIL5 MUTATED        0      0      0      0
  PPIL5 WILD-TYPE     33     31     27     19
D1744V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIL5 MUTATED        0      0      0      0
  PPIL5 WILD-TYPE     54     10     24     22
D1744V12, multiclass

Clustering(1745) Variable = RNF8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF8 MUTATED        0      0      0      1
  RNF8 WILD-TYPE     46     58     64     42
D1745V1, multiclass
[1] "Remove cluster labels:" "RNF8 MUTATED"          
clus
  RNF8 MUTATED RNF8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNF8 MUTATED        0      1      0
  RNF8 WILD-TYPE     51     82     77
D1745V2, multiclass
[1] "Remove cluster labels:" "RNF8 MUTATED"          
clus
  RNF8 MUTATED RNF8 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF8 MUTATED        6      1      0      0
  RNF8 WILD-TYPE    172    182    101     20
D1745V3, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNF8 MUTATED        5      0      1
  RNF8 WILD-TYPE     82     80     99
D1745V4, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNF8 MUTATED        0      3      3
  RNF8 WILD-TYPE     89    157    135
D1745V5, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNF8 MUTATED        2      4      0
  RNF8 WILD-TYPE    180    129     72
D1745V6, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF8 MUTATED        0      3      2      2
  RNF8 WILD-TYPE    112     93     90    184
D1745V7, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF8 MUTATED        0      2      1      1      1      0      2
  RNF8 WILD-TYPE     60     48     48     39     62    125     97
D1745V8, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF8 MUTATED        0      2      2      3
  RNF8 WILD-TYPE    130     76     66    193
D1745V9, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            0            130
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RNF8 MUTATED        0      2      2      0      0      0      1      0      2
  RNF8 WILD-TYPE     40     60     26     80     69     48     42     28     72
D1745V10, multiclass
        clus
vv       RNF8 MUTATED RNF8 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF8 MUTATED        0      0      0      1
  RNF8 WILD-TYPE     33     31     27     18
D1745V11, multiclass
[1] "Remove cluster labels:" "RNF8 MUTATED"          
clus
  RNF8 MUTATED RNF8 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-G5-6641 
"RNF8 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF8 MUTATED        1      0      0      0
  RNF8 WILD-TYPE     53     10     24     22
D1745V12, multiclass
[1] "Remove cluster labels:" "RNF8 MUTATED"          
clus
  RNF8 MUTATED RNF8 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" "RNF8 WILD-TYPE" 
    TCGA-G5-6641 
"RNF8 WILD-TYPE" 

Clustering(1746) Variable = EPHA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA6 MUTATED        3      0      0      1
  EPHA6 WILD-TYPE     43     58     64     42
D1746V1, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA6 MUTATED        2      2      0
  EPHA6 WILD-TYPE     49     81     77
D1746V2, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA6 MUTATED       14      5      4      1
  EPHA6 WILD-TYPE    164    178     97     19
D1746V3, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             5             178
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA6 MUTATED        6      4      9
  EPHA6 WILD-TYPE     81     76     91
D1746V4, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA6 MUTATED        2      9      8
  EPHA6 WILD-TYPE     87    151    130
D1746V5, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA6 MUTATED        7     10      2
  EPHA6 WILD-TYPE    175    123     70
D1746V6, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             7             175
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA6 MUTATED        8      9      2      5
  EPHA6 WILD-TYPE    104     87     90    181
D1746V7, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             9              87
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA6 MUTATED        5      3      5      4      2      1      4
  EPHA6 WILD-TYPE     55     47     44     36     61    124     95
D1746V8, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             4              36
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA6 MUTATED       11      3      2      8
  EPHA6 WILD-TYPE    119     75     66    188
D1746V9, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHA6 MUTATED        3      2      3      5      7      1      2      0
  EPHA6 WILD-TYPE     37     60     25     75     62     47     41     28
                 vv
clus              CLUS_9
  EPHA6 MUTATED        1
  EPHA6 WILD-TYPE     73
D1746V10, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             5              75
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA6 MUTATED        0      3      2      1
  EPHA6 WILD-TYPE     33     28     25     18
D1746V11, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA6 MUTATED        2      1      1      2
  EPHA6 WILD-TYPE     52      9     23     20
D1746V12, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1747) Variable = KIAA1407 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1407 MUTATED        3      0      0      2
  KIAA1407 WILD-TYPE     43     58     64     41
D1747V1, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1407 MUTATED        3      1      1
  KIAA1407 WILD-TYPE     48     82     76
D1747V2, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1407 MUTATED        8      3      1      0
  KIAA1407 WILD-TYPE    170    180    100     20
D1747V3, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                8                170
  CLUS_2                3                180
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1407 MUTATED        3      2      3
  KIAA1407 WILD-TYPE     84     78     97
D1747V4, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                2                 78
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1407 MUTATED        1      6      5
  KIAA1407 WILD-TYPE     88    154    133
D1747V5, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                6                154
  CLUS_3                5                133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1407 MUTATED        3      6      3
  KIAA1407 WILD-TYPE    179    127     69
D1747V6, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                6                127
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1407 MUTATED        2      3      3      5
  KIAA1407 WILD-TYPE    110     93     89    181
D1747V7, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                3                 89
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1407 MUTATED        1      0      3      2      2      0      5
  KIAA1407 WILD-TYPE     59     50     46     38     61    125     94
D1747V8, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                2                 38
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1407 MUTATED        3      3      1      6
  KIAA1407 WILD-TYPE    127     75     67    190
D1747V9, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                3                 75
  CLUS_3                1                 67
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1407 MUTATED        1      3      1      0      7      0      1      0
  KIAA1407 WILD-TYPE     39     59     27     80     62     48     42     28
                    vv
clus                 CLUS_9
  KIAA1407 MUTATED        0
  KIAA1407 WILD-TYPE     74
D1747V10, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1407 MUTATED        2      1      0      2
  KIAA1407 WILD-TYPE     31     30     27     17
D1747V11, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1407 MUTATED        3      0      1      1
  KIAA1407 WILD-TYPE     51     10     23     21
D1747V12, multiclass
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1748) Variable = LIMCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        4      1      0      2
  LIMCH1 WILD-TYPE     42     57     64     41
D1748V1, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LIMCH1 MUTATED        5      0      2
  LIMCH1 WILD-TYPE     46     83     75
D1748V2, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED       11      2      0      0
  LIMCH1 WILD-TYPE    167    181    101     20
D1748V3, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LIMCH1 MUTATED        4      1      3
  LIMCH1 WILD-TYPE     83     79     97
D1748V4, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LIMCH1 MUTATED        2      3     10
  LIMCH1 WILD-TYPE     87    157    128
D1748V5, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LIMCH1 MUTATED        9      6      0
  LIMCH1 WILD-TYPE    173    127     72
D1748V6, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        2      5      2      6
  LIMCH1 WILD-TYPE    110     91     90    180
D1748V7, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              2               90
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LIMCH1 MUTATED        2      3      2      0      1      1      6
  LIMCH1 WILD-TYPE     58     47     47     40     62    124     93
D1748V8, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        2      2      1      8
  LIMCH1 WILD-TYPE    128     76     67    188
D1748V9, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LIMCH1 MUTATED        0      2      0      2      4      0      1      2
  LIMCH1 WILD-TYPE     40     60     28     78     65     48     42     26
                  vv
clus               CLUS_9
  LIMCH1 MUTATED        2
  LIMCH1 WILD-TYPE     72
D1748V10, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              2               26
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        0      0      1      0
  LIMCH1 WILD-TYPE     33     31     26     19
D1748V11, multiclass
[1] "Remove cluster labels:" "LIMCH1 MUTATED"        
clus
  LIMCH1 MUTATED LIMCH1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-G5-6641 
"LIMCH1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        0      0      1      0
  LIMCH1 WILD-TYPE     54     10     23     22
D1748V12, multiclass
[1] "Remove cluster labels:" "LIMCH1 MUTATED"        
clus
  LIMCH1 MUTATED LIMCH1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1H8 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" "LIMCH1 WILD-TYPE" 
      TCGA-G5-6641 
"LIMCH1 WILD-TYPE" 

Clustering(1749) Variable = ATAD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2 MUTATED        4      0      0      2
  ATAD2 WILD-TYPE     42     58     64     41
D1749V1, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD2 MUTATED        5      0      1
  ATAD2 WILD-TYPE     46     83     76
D1749V2, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2 MUTATED       18      2      1      1
  ATAD2 WILD-TYPE    160    181    100     19
D1749V3, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD2 MUTATED        8      3      5
  ATAD2 WILD-TYPE     79     77     95
D1749V4, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD2 MUTATED        3      8     11
  ATAD2 WILD-TYPE     86    152    127
D1749V5, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             8             152
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATAD2 MUTATED       11      8      3
  ATAD2 WILD-TYPE    171    125     69
D1749V6, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             8             125
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2 MUTATED        3      9      4      6
  ATAD2 WILD-TYPE    109     87     88    180
D1749V7, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             9              87
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATAD2 MUTATED        1      4      6      3      2      0      6
  ATAD2 WILD-TYPE     59     46     43     37     61    125     93
D1749V8, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             4              46
  CLUS_3             6              43
  CLUS_4             3              37
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2 MUTATED       10      3      1      7
  ATAD2 WILD-TYPE    120     75     67    189
D1749V9, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATAD2 MUTATED        4      4      1      2      7      1      1      0
  ATAD2 WILD-TYPE     36     58     27     78     62     47     42     28
                 vv
clus              CLUS_9
  ATAD2 MUTATED        1
  ATAD2 WILD-TYPE     73
D1749V10, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2 MUTATED        2      0      2      1
  ATAD2 WILD-TYPE     31     31     25     18
D1749V11, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATAD2 MUTATED        3      1      1      0
  ATAD2 WILD-TYPE     51      9     23     22
D1749V12, multiclass
        clus
vv       ATAD2 MUTATED ATAD2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1750) Variable = ZNF594 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF594 MUTATED        3      0      0      1
  ZNF594 WILD-TYPE     43     58     64     42
D1750V1, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF594 MUTATED        2      1      1
  ZNF594 WILD-TYPE     49     82     76
D1750V2, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF594 MUTATED       11      3      2      0
  ZNF594 WILD-TYPE    167    180     99     20
D1750V3, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF594 MUTATED        7      2      3
  ZNF594 WILD-TYPE     80     78     97
D1750V4, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF594 MUTATED        2      2      9
  ZNF594 WILD-TYPE     87    158    129
D1750V5, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              2              158
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF594 MUTATED        8      3      2
  ZNF594 WILD-TYPE    174    130     70
D1750V6, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF594 MUTATED        2      4      5      5
  ZNF594 WILD-TYPE    110     92     87    181
D1750V7, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF594 MUTATED        3      2      4      1      2      2      2
  ZNF594 WILD-TYPE     57     48     45     39     61    123     97
D1750V8, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF594 MUTATED        4      5      1      6
  ZNF594 WILD-TYPE    126     73     67    190
D1750V9, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF594 MUTATED        1      4      0      2      6      0      2      0
  ZNF594 WILD-TYPE     39     58     28     78     63     48     41     28
                  vv
clus               CLUS_9
  ZNF594 MUTATED        1
  ZNF594 WILD-TYPE     73
D1750V10, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF594 MUTATED        2      1      1      3
  ZNF594 WILD-TYPE     31     30     26     16
D1750V11, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF594 MUTATED        5      0      1      1
  ZNF594 WILD-TYPE     49     10     23     21
D1750V12, multiclass
        clus
vv       ZNF594 MUTATED ZNF594 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1751) Variable = ACTRT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT1 MUTATED        3      0      0      0
  ACTRT1 WILD-TYPE     43     58     64     43
D1751V1, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT1 MUTATED        3      0      0
  ACTRT1 WILD-TYPE     48     83     77
D1751V2, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT1 MUTATED        6      5      1      1
  ACTRT1 WILD-TYPE    172    178    100     19
D1751V3, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT1 MUTATED        5      4      1
  ACTRT1 WILD-TYPE     82     76     99
D1751V4, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              4               76
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT1 MUTATED        1      4      3
  ACTRT1 WILD-TYPE     88    156    135
D1751V5, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTRT1 MUTATED        4      3      1
  ACTRT1 WILD-TYPE    178    130     71
D1751V6, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT1 MUTATED        4      2      4      3
  ACTRT1 WILD-TYPE    108     94     88    183
D1751V7, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTRT1 MUTATED        3      0      1      2      4      0      3
  ACTRT1 WILD-TYPE     57     50     48     38     59    125     96
D1751V8, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              4               59
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT1 MUTATED        5      3      2      3
  ACTRT1 WILD-TYPE    125     75     66    193
D1751V9, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACTRT1 MUTATED        3      2      0      1      3      1      1      1
  ACTRT1 WILD-TYPE     37     60     28     79     66     47     42     27
                  vv
clus               CLUS_9
  ACTRT1 MUTATED        1
  ACTRT1 WILD-TYPE     73
D1751V10, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT1 MUTATED        0      3      0      1
  ACTRT1 WILD-TYPE     33     28     27     18
D1751V11, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              3               28
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTRT1 MUTATED        2      1      1      0
  ACTRT1 WILD-TYPE     52      9     23     22
D1751V12, multiclass
        clus
vv       ACTRT1 MUTATED ACTRT1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1752) Variable = CNTNAP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP3 MUTATED        3      0      0      2
  CNTNAP3 WILD-TYPE     43     58     64     41
D1752V1, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP3 MUTATED        2      2      1
  CNTNAP3 WILD-TYPE     49     81     76
D1752V2, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP3 MUTATED       10      2      2      0
  CNTNAP3 WILD-TYPE    168    181     99     20
D1752V3, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1              10               168
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP3 MUTATED        2      1      7
  CNTNAP3 WILD-TYPE     85     79     93
D1752V4, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP3 MUTATED        4      5      4
  CNTNAP3 WILD-TYPE     85    155    134
D1752V5, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               5               155
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP3 MUTATED        7      2      4
  CNTNAP3 WILD-TYPE    175    131     68
D1752V6, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               2               131
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP3 MUTATED        1      5      3      5
  CNTNAP3 WILD-TYPE    111     91     89    181
D1752V7, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNTNAP3 MUTATED        1      4      2      1      2      1      3
  CNTNAP3 WILD-TYPE     59     46     47     39     61    124     96
D1752V8, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               4                46
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP3 MUTATED        4      3      0      7
  CNTNAP3 WILD-TYPE    126     75     68    189
D1752V9, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNTNAP3 MUTATED        0      3      2      3      3      1      2      0
  CNTNAP3 WILD-TYPE     40     59     26     77     66     47     41     28
                   vv
clus                CLUS_9
  CNTNAP3 MUTATED        0
  CNTNAP3 WILD-TYPE     74
D1752V10, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP3 MUTATED        0      1      1      1
  CNTNAP3 WILD-TYPE     33     30     26     18
D1752V11, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP3 MUTATED        1      1      1      0
  CNTNAP3 WILD-TYPE     53      9     23     22
D1752V12, multiclass
        clus
vv       CNTNAP3 MUTATED CNTNAP3 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1753) Variable = GRIN2B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN2B MUTATED        2      0      0      4
  GRIN2B WILD-TYPE     44     58     64     39
D1753V1, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GRIN2B MUTATED        4      1      1
  GRIN2B WILD-TYPE     47     82     76
D1753V2, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN2B MUTATED       20      4      3      1
  GRIN2B WILD-TYPE    158    179     98     19
D1753V3, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1             20              158
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GRIN2B MUTATED        6      4     11
  GRIN2B WILD-TYPE     81     76     89
D1753V4, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              6               81
  CLUS_2              4               76
  CLUS_3             11               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GRIN2B MUTATED        2      9     10
  GRIN2B WILD-TYPE     87    151    128
D1753V5, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              2               87
  CLUS_2              9              151
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GRIN2B MUTATED       10      9      2
  GRIN2B WILD-TYPE    172    124     70
D1753V6, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1             10              172
  CLUS_2              9              124
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN2B MUTATED        5      9      7      7
  GRIN2B WILD-TYPE    107     87     85    179
D1753V7, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              5              107
  CLUS_2              9               87
  CLUS_3              7               85
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GRIN2B MUTATED        4      2      9      4      3      0      6
  GRIN2B WILD-TYPE     56     48     40     36     60    125     93
D1753V8, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              9               40
  CLUS_4              4               36
  CLUS_5              3               60
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN2B MUTATED        9      6      3      8
  GRIN2B WILD-TYPE    121     72     65    188
D1753V9, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              9              121
  CLUS_2              6               72
  CLUS_3              3               65
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GRIN2B MUTATED        4      4      2      1      9      1      4      1
  GRIN2B WILD-TYPE     36     58     26     79     60     47     39     27
                  vv
clus               CLUS_9
  GRIN2B MUTATED        0
  GRIN2B WILD-TYPE     74
D1753V10, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              4               36
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              9               60
  CLUS_6              1               47
  CLUS_7              4               39
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN2B MUTATED        3      1      0      3
  GRIN2B WILD-TYPE     30     30     27     16
D1753V11, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN2B MUTATED        4      1      1      1
  GRIN2B WILD-TYPE     50      9     23     21
D1753V12, multiclass
        clus
vv       GRIN2B MUTATED GRIN2B WILD-TYPE
  CLUS_1              4               50
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1754) Variable = CXORF23 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF23 MUTATED        0      1      0      0
  CXORF23 WILD-TYPE     46     57     64     43
D1754V1, multiclass
[1] "Remove cluster labels:" "CXORF23 MUTATED"       
clus
  CXORF23 MUTATED CXORF23 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF23 MUTATED        0      1      0
  CXORF23 WILD-TYPE     51     82     77
D1754V2, multiclass
[1] "Remove cluster labels:" "CXORF23 MUTATED"       
clus
  CXORF23 MUTATED CXORF23 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CXORF23 WILD-TYPE" "CXORF23 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF23 MUTATED        2      2      3      0
  CXORF23 WILD-TYPE    176    181     98     20
D1754V3, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               2               181
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF23 MUTATED        1      3      2
  CXORF23 WILD-TYPE     86     77     98
D1754V4, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               3                77
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF23 MUTATED        1      4      2
  CXORF23 WILD-TYPE     88    156    136
D1754V5, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CXORF23 MUTATED        3      3      1
  CXORF23 WILD-TYPE    179    130     71
D1754V6, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF23 MUTATED        2      1      3      1
  CXORF23 WILD-TYPE    110     95     89    185
D1754V7, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CXORF23 MUTATED        1      2      1      0      2      0      1
  CXORF23 WILD-TYPE     59     48     48     40     61    125     98
D1754V8, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF23 MUTATED        3      2      1      1
  CXORF23 WILD-TYPE    127     76     67    195
D1754V9, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CXORF23 MUTATED        1      2      0      1      1      1      1      0
  CXORF23 WILD-TYPE     39     60     28     79     68     47     42     28
                   vv
clus                CLUS_9
  CXORF23 MUTATED        0
  CXORF23 WILD-TYPE     74
D1754V10, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF23 MUTATED        1      2      0      1
  CXORF23 WILD-TYPE     32     29     27     18
D1754V11, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXORF23 MUTATED        3      0      0      1
  CXORF23 WILD-TYPE     51     10     24     21
D1754V12, multiclass
        clus
vv       CXORF23 MUTATED CXORF23 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1755) Variable = EFCAB4B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB4B MUTATED        0      0      0      2
  EFCAB4B WILD-TYPE     46     58     64     41
D1755V1, multiclass
[1] "Remove cluster labels:" "EFCAB4B MUTATED"       
clus
  EFCAB4B MUTATED EFCAB4B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A032        TCGA-AY-4070 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AY-4071 
"EFCAB4B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EFCAB4B MUTATED        2      0      0
  EFCAB4B WILD-TYPE     49     83     77
D1755V2, multiclass
[1] "Remove cluster labels:" "EFCAB4B MUTATED"       
clus
  EFCAB4B MUTATED EFCAB4B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A032        TCGA-AY-4070 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AY-4071 
"EFCAB4B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB4B MUTATED        5      0      2      0
  EFCAB4B WILD-TYPE    173    183     99     20
D1755V3, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EFCAB4B MUTATED        1      1      3
  EFCAB4B WILD-TYPE     86     79     97
D1755V4, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EFCAB4B MUTATED        2      0      3
  EFCAB4B WILD-TYPE     87    160    135
D1755V5, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               0               160
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EFCAB4B MUTATED        3      2      0
  EFCAB4B WILD-TYPE    179    131     72
D1755V6, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB4B MUTATED        1      3      1      2
  EFCAB4B WILD-TYPE    111     93     91    184
D1755V7, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EFCAB4B MUTATED        0      0      2      2      1      0      2
  EFCAB4B WILD-TYPE     60     50     47     38     62    125     97
D1755V8, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB4B MUTATED        3      1      1      2
  EFCAB4B WILD-TYPE    127     77     67    194
D1755V9, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EFCAB4B MUTATED        2      1      0      0      3      0      0      0
  EFCAB4B WILD-TYPE     38     61     28     80     66     48     43     28
                   vv
clus                CLUS_9
  EFCAB4B MUTATED        1
  EFCAB4B WILD-TYPE     73
D1755V10, multiclass
        clus
vv       EFCAB4B MUTATED EFCAB4B WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB4B MUTATED        0      1      0      1
  EFCAB4B WILD-TYPE     33     30     27     18
D1755V11, multiclass
[1] "Remove cluster labels:" "EFCAB4B MUTATED"       
clus
  EFCAB4B MUTATED EFCAB4B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-F4-6460        TCGA-F4-6569 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFCAB4B MUTATED        0      1      1      0
  EFCAB4B WILD-TYPE     54      9     23     22
D1755V12, multiclass
[1] "Remove cluster labels:" "EFCAB4B MUTATED"       
clus
  EFCAB4B MUTATED EFCAB4B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-F4-6460        TCGA-F4-6569 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" "EFCAB4B WILD-TYPE" 

Clustering(1756) Variable = EPSTI1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPSTI1 MUTATED        2      0      0      0
  EPSTI1 WILD-TYPE     44     58     64     43
D1756V1, multiclass
[1] "Remove cluster labels:" "EPSTI1 MUTATED"        
clus
  EPSTI1 MUTATED EPSTI1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AY-4071 
"EPSTI1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPSTI1 MUTATED        2      0      0
  EPSTI1 WILD-TYPE     49     83     77
D1756V2, multiclass
[1] "Remove cluster labels:" "EPSTI1 MUTATED"        
clus
  EPSTI1 MUTATED EPSTI1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AY-4071 
"EPSTI1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPSTI1 MUTATED        6      1      0      0
  EPSTI1 WILD-TYPE    172    182    101     20
D1756V3, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPSTI1 MUTATED        2      1      3
  EPSTI1 WILD-TYPE     85     79     97
D1756V4, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPSTI1 MUTATED        0      3      3
  EPSTI1 WILD-TYPE     89    157    135
D1756V5, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPSTI1 MUTATED        2      3      1
  EPSTI1 WILD-TYPE    180    130     71
D1756V6, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPSTI1 MUTATED        1      3      1      2
  EPSTI1 WILD-TYPE    111     93     91    184
D1756V7, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPSTI1 MUTATED        1      1      1      0      1      0      3
  EPSTI1 WILD-TYPE     59     49     48     40     62    125     96
D1756V8, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPSTI1 MUTATED        2      1      0      4
  EPSTI1 WILD-TYPE    128     77     68    192
D1756V9, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPSTI1 MUTATED        0      1      1      1      3      0      0      0
  EPSTI1 WILD-TYPE     40     61     27     79     66     48     43     28
                  vv
clus               CLUS_9
  EPSTI1 MUTATED        1
  EPSTI1 WILD-TYPE     73
D1756V10, multiclass
        clus
vv       EPSTI1 MUTATED EPSTI1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPSTI1 MUTATED        1      0      0      1
  EPSTI1 WILD-TYPE     32     31     27     18
D1756V11, multiclass
[1] "Remove cluster labels:" "EPSTI1 MUTATED"        
clus
  EPSTI1 MUTATED EPSTI1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPSTI1 MUTATED        0      0      2      0
  EPSTI1 WILD-TYPE     54     10     22     22
D1756V12, multiclass
[1] "Remove cluster labels:" "EPSTI1 MUTATED"        
clus
  EPSTI1 MUTATED EPSTI1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" "EPSTI1 WILD-TYPE" 

Clustering(1757) Variable = GPR160 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        1      0      0      2
  GPR160 WILD-TYPE     45     58     64     41
D1757V1, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        2      0      1
  GPR160 WILD-TYPE     49     83     76
D1757V2, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        5      0      0      0
  GPR160 WILD-TYPE    173    183    101     20
D1757V3, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        0      0      2
  GPR160 WILD-TYPE     87     80     98
D1757V4, multiclass
[1] "Remove cluster labels:" "GPR160 MUTATED"        
clus
  GPR160 MUTATED GPR160 WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AF-2693       TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-4681       TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CK-4948       TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CK-5913       TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CK-6746       TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CL-5917       TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6929       TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-7000       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XD 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4       TCGA-DM-A1D6 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB       TCGA-DM-A282 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A285       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DM-A28H       TCGA-DM-A28K       TCGA-DT-5265 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DY-A0XA       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-EI-6507       TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6703       TCGA-F4-6704 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G4-6317       TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G5-6641 
"GPR160 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        1      1      3
  GPR160 WILD-TYPE     88    159    135
D1757V5, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        4      1      0
  GPR160 WILD-TYPE    178    132     72
D1757V6, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        0      1      1      3
  GPR160 WILD-TYPE    112     95     91    183
D1757V7, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR160 MUTATED        1      0      2      0      0      0      2
  GPR160 WILD-TYPE     59     50     47     40     63    125     97
D1757V8, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        1      0      0      3
  GPR160 WILD-TYPE    129     78     68    193
D1757V9, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR160 MUTATED        0      0      0      0      4      0      0      0
  GPR160 WILD-TYPE     40     62     28     80     65     48     43     28
                  vv
clus               CLUS_9
  GPR160 MUTATED        0
  GPR160 WILD-TYPE     74
D1757V10, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        0      0      0      1
  GPR160 WILD-TYPE     33     31     27     18
D1757V11, multiclass
[1] "Remove cluster labels:" "GPR160 MUTATED"        
clus
  GPR160 MUTATED GPR160 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G5-6641 
"GPR160 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        1      0      0      0
  GPR160 WILD-TYPE     53     10     24     22
D1757V12, multiclass
[1] "Remove cluster labels:" "GPR160 MUTATED"        
clus
  GPR160 MUTATED GPR160 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" "GPR160 WILD-TYPE" 
      TCGA-G5-6641 
"GPR160 WILD-TYPE" 

Clustering(1758) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        3      0      0      1
  EPHA2 WILD-TYPE     43     58     64     42
D1758V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        4      0      0
  EPHA2 WILD-TYPE     47     83     77
D1758V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        9      1      1      0
  EPHA2 WILD-TYPE    169    182    100     20
D1758V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        3      0      4
  EPHA2 WILD-TYPE     84     80     96
D1758V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        1      3      5
  EPHA2 WILD-TYPE     88    157    133
D1758V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        5      3      1
  EPHA2 WILD-TYPE    177    130     71
D1758V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        0      5      2      4
  EPHA2 WILD-TYPE    112     91     90    182
D1758V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA2 MUTATED        0      0      6      0      0      0      5
  EPHA2 WILD-TYPE     60     50     43     40     63    125     94
D1758V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        4      1      0      5
  EPHA2 WILD-TYPE    126     77     68    191
D1758V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHA2 MUTATED        0      2      0      0      8      0      0      0
  EPHA2 WILD-TYPE     40     60     28     80     61     48     43     28
                 vv
clus              CLUS_9
  EPHA2 MUTATED        0
  EPHA2 WILD-TYPE     74
D1758V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        1      0      0      2
  EPHA2 WILD-TYPE     32     31     27     17
D1758V11, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        1      0      2      0
  EPHA2 WILD-TYPE     53     10     22     22
D1758V12, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1759) Variable = ZBTB7C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        3      0      0      3
  ZBTB7C WILD-TYPE     43     58     64     40
D1759V1, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED        5      0      1
  ZBTB7C WILD-TYPE     46     83     76
D1759V2, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              5               46
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED       11      0      4      0
  ZBTB7C WILD-TYPE    167    183     97     20
D1759V3, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED        2      2      5
  ZBTB7C WILD-TYPE     85     78     95
D1759V4, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED        5      5      2
  ZBTB7C WILD-TYPE     84    155    136
D1759V5, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              5               84
  CLUS_2              5              155
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED        3      3      6
  ZBTB7C WILD-TYPE    179    130     66
D1759V6, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        3      5      2      5
  ZBTB7C WILD-TYPE    109     91     90    181
D1759V7, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZBTB7C MUTATED        3      0      6      0      1      0      5
  ZBTB7C WILD-TYPE     57     50     43     40     62    125     94
D1759V8, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        7      1      0      7
  ZBTB7C WILD-TYPE    123     77     68    189
D1759V9, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              7              123
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZBTB7C MUTATED        0      2      0      1      9      2      0      1
  ZBTB7C WILD-TYPE     40     60     28     79     60     46     43     27
                  vv
clus               CLUS_9
  ZBTB7C MUTATED        0
  ZBTB7C WILD-TYPE     74
D1759V10, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              9               60
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        0      1      0      2
  ZBTB7C WILD-TYPE     33     30     27     17
D1759V11, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        0      1      2      0
  ZBTB7C WILD-TYPE     54      9     22     22
D1759V12, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              0               54
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1760) Variable = CHM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHM MUTATED        0      0      0      1
  CHM WILD-TYPE     46     58     64     42
D1760V1, multiclass
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3575    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3612    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3882    TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3901    TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CHM MUTATED        0      0      1
  CHM WILD-TYPE     51     83     76
D1760V2, multiclass
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3575    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3612    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3882    TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-3901    TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHM MUTATED        2      0      2      1
  CHM WILD-TYPE    176    183     99     19
D1760V3, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           2           176
  CLUS_2           0           183
  CLUS_3           2            99
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CHM MUTATED        3      0      1
  CHM WILD-TYPE     84     80     99
D1760V4, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           3            84
  CLUS_2           0            80
  CLUS_3           1            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CHM MUTATED        0      1      3
  CHM WILD-TYPE     89    159    135
D1760V5, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           0            89
  CLUS_2           1           159
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CHM MUTATED        3      1      0
  CHM WILD-TYPE    179    132     72
D1760V6, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           3           179
  CLUS_2           1           132
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHM MUTATED        2      2      0      1
  CHM WILD-TYPE    110     94     92    185
D1760V7, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           2           110
  CLUS_2           2            94
  CLUS_3           0            92
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHM MUTATED        3      1      0      1      0      0      0
  CHM WILD-TYPE     57     49     49     39     63    125     99
D1760V8, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           3            57
  CLUS_2           1            49
  CLUS_3           0            49
  CLUS_4           1            39
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHM MUTATED        3      0      1      1
  CHM WILD-TYPE    127     78     67    195
D1760V9, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           3           127
  CLUS_2           0            78
  CLUS_3           1            67
  CLUS_4           1           195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CHM MUTATED        1      0      0      1      1      0      2      0      0
  CHM WILD-TYPE     39     62     28     79     68     48     41     28     74
D1760V10, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           1            39
  CLUS_2           0            62
  CLUS_3           0            28
  CLUS_4           1            79
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           2            41
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHM MUTATED        2      1      0      0
  CHM WILD-TYPE     31     30     27     19
D1760V11, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHM MUTATED        3      0      0      0
  CHM WILD-TYPE     51     10     24     22
D1760V12, multiclass
        clus
vv       CHM MUTATED CHM WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1761) Variable = MAPK14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK14 MUTATED        1      0      0      2
  MAPK14 WILD-TYPE     45     58     64     41
D1761V1, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK14 MUTATED        1      2      0
  MAPK14 WILD-TYPE     50     81     77
D1761V2, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK14 MUTATED        5      1      0      2
  MAPK14 WILD-TYPE    173    182    101     18
D1761V3, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK14 MUTATED        3      1      1
  MAPK14 WILD-TYPE     84     79     99
D1761V4, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK14 MUTATED        1      3      2
  MAPK14 WILD-TYPE     88    157    136
D1761V5, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK14 MUTATED        3      1      2
  MAPK14 WILD-TYPE    179    132     70
D1761V6, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK14 MUTATED        1      2      2      3
  MAPK14 WILD-TYPE    111     94     90    183
D1761V7, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAPK14 MUTATED        1      1      0      1      2      1      2
  MAPK14 WILD-TYPE     59     49     49     39     61    124     97
D1761V8, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK14 MUTATED        1      3      1      2
  MAPK14 WILD-TYPE    129     75     67    194
D1761V9, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAPK14 MUTATED        1      2      1      1      0      1      1      0
  MAPK14 WILD-TYPE     39     60     27     79     69     47     42     28
                  vv
clus               CLUS_9
  MAPK14 MUTATED        0
  MAPK14 WILD-TYPE     74
D1761V10, multiclass
        clus
vv       MAPK14 MUTATED MAPK14 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK14 MUTATED        1      1      0      0
  MAPK14 WILD-TYPE     32     30     27     19
D1761V11, multiclass
[1] "Remove cluster labels:" "MAPK14 MUTATED"        
clus
  MAPK14 MUTATED MAPK14 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-CA-6718       TCGA-CA-6719 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK14 MUTATED        2      0      0      0
  MAPK14 WILD-TYPE     52     10     24     22
D1761V12, multiclass
[1] "Remove cluster labels:" "MAPK14 MUTATED"        
clus
  MAPK14 MUTATED MAPK14 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-CA-6718       TCGA-CA-6719 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" "MAPK14 WILD-TYPE" 

Clustering(1762) Variable = C12ORF11 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF11 MUTATED        2      1      0      4
  C12ORF11 WILD-TYPE     44     57     64     39
D1762V1, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF11 MUTATED        2      2      3
  C12ORF11 WILD-TYPE     49     81     74
D1762V2, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                3                 74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF11 MUTATED       11      1      1      0
  C12ORF11 WILD-TYPE    167    182    100     20
D1762V3, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1               11                167
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF11 MUTATED        4      1      2
  C12ORF11 WILD-TYPE     83     79     98
D1762V4, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF11 MUTATED        0      4      8
  C12ORF11 WILD-TYPE     89    156    130
D1762V5, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                4                156
  CLUS_3                8                130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF11 MUTATED        9      3      0
  C12ORF11 WILD-TYPE    173    130     72
D1762V6, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                9                173
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF11 MUTATED        0      4      4      6
  C12ORF11 WILD-TYPE    112     92     88    180
D1762V7, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                4                 92
  CLUS_3                4                 88
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C12ORF11 MUTATED        2      0      5      1      0      2      4
  C12ORF11 WILD-TYPE     58     50     44     39     63    123     95
D1762V8, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                5                 44
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF11 MUTATED        5      2      0      6
  C12ORF11 WILD-TYPE    125     76     68    190
D1762V9, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C12ORF11 MUTATED        0      4      2      2      3      1      0      1
  C12ORF11 WILD-TYPE     40     58     26     78     66     47     43     27
                    vv
clus                 CLUS_9
  C12ORF11 MUTATED        0
  C12ORF11 WILD-TYPE     74
D1762V10, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 58
  CLUS_3                2                 26
  CLUS_4                2                 78
  CLUS_5                3                 66
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF11 MUTATED        0      0      1      2
  C12ORF11 WILD-TYPE     33     31     26     17
D1762V11, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 31
  CLUS_3                1                 26
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF11 MUTATED        2      0      1      0
  C12ORF11 WILD-TYPE     52     10     23     22
D1762V12, multiclass
        clus
vv       C12ORF11 MUTATED C12ORF11 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1763) Variable = AOX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOX1 MUTATED        4      0      0      2
  AOX1 WILD-TYPE     42     58     64     41
D1763V1, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOX1 MUTATED        5      0      1
  AOX1 WILD-TYPE     46     83     76
D1763V2, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOX1 MUTATED       10      2      1      0
  AOX1 WILD-TYPE    168    181    100     20
D1763V3, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOX1 MUTATED        2      1      4
  AOX1 WILD-TYPE     85     79     96
D1763V4, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOX1 MUTATED        1      4      5
  AOX1 WILD-TYPE     88    156    133
D1763V5, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOX1 MUTATED        4      4      2
  AOX1 WILD-TYPE    178    129     70
D1763V6, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOX1 MUTATED        2      2      3      6
  AOX1 WILD-TYPE    110     94     89    180
D1763V7, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AOX1 MUTATED        1      1      4      0      2      0      5
  AOX1 WILD-TYPE     59     49     45     40     61    125     94
D1763V8, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOX1 MUTATED        6      1      0      6
  AOX1 WILD-TYPE    124     77     68    190
D1763V9, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AOX1 MUTATED        2      3      0      1      6      0      0      1      0
  AOX1 WILD-TYPE     38     59     28     79     63     48     43     27     74
D1763V10, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOX1 MUTATED        0      0      1      2
  AOX1 WILD-TYPE     33     31     26     17
D1763V11, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOX1 MUTATED        1      0      2      0
  AOX1 WILD-TYPE     53     10     22     22
D1763V12, multiclass
        clus
vv       AOX1 MUTATED AOX1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1764) Variable = SLC12A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A2 MUTATED        3      1      0      2
  SLC12A2 WILD-TYPE     43     57     64     41
D1764V1, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A2 MUTATED        3      2      1
  SLC12A2 WILD-TYPE     48     81     76
D1764V2, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A2 MUTATED       12      2      3      1
  SLC12A2 WILD-TYPE    166    181     98     19
D1764V3, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               2               181
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A2 MUTATED        7      2      3
  SLC12A2 WILD-TYPE     80     78     97
D1764V4, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               2                78
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A2 MUTATED        0      5      8
  SLC12A2 WILD-TYPE     89    155    130
D1764V5, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A2 MUTATED        7      5      1
  SLC12A2 WILD-TYPE    175    128     71
D1764V6, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A2 MUTATED        1      2      8      7
  SLC12A2 WILD-TYPE    111     94     84    179
D1764V7, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               8                84
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC12A2 MUTATED        3      1      3      1      4      1      5
  SLC12A2 WILD-TYPE     57     49     46     39     59    124     94
D1764V8, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               4                59
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A2 MUTATED        3      6      1      7
  SLC12A2 WILD-TYPE    127     72     67    189
D1764V9, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               6                72
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC12A2 MUTATED        1      6      1      1      4      1      1      0
  SLC12A2 WILD-TYPE     39     56     27     79     65     47     42     28
                   vv
clus                CLUS_9
  SLC12A2 MUTATED        2
  SLC12A2 WILD-TYPE     72
D1764V10, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               6                56
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A2 MUTATED        1      1      0      2
  SLC12A2 WILD-TYPE     32     30     27     17
D1764V11, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A2 MUTATED        3      0      1      0
  SLC12A2 WILD-TYPE     51     10     23     22
D1764V12, multiclass
        clus
vv       SLC12A2 MUTATED SLC12A2 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1765) Variable = UGT2A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A1 MUTATED        1      1      0      3
  UGT2A1 WILD-TYPE     45     57     64     40
D1765V1, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT2A1 MUTATED        3      2      0
  UGT2A1 WILD-TYPE     48     81     77
D1765V2, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A1 MUTATED       10      0      0      0
  UGT2A1 WILD-TYPE    168    183    101     20
D1765V3, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT2A1 MUTATED        1      0      2
  UGT2A1 WILD-TYPE     86     80     98
D1765V4, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT2A1 MUTATED        3      3      1
  UGT2A1 WILD-TYPE     86    157    137
D1765V5, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT2A1 MUTATED        3      3      1
  UGT2A1 WILD-TYPE    179    130     71
D1765V6, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A1 MUTATED        0      1      2      7
  UGT2A1 WILD-TYPE    112     95     90    179
D1765V7, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UGT2A1 MUTATED        0      1      1      0      1      1      6
  UGT2A1 WILD-TYPE     60     49     48     40     62    124     93
D1765V8, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A1 MUTATED        2      1      0      7
  UGT2A1 WILD-TYPE    128     77     68    189
D1765V9, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UGT2A1 MUTATED        0      1      2      0      6      0      0      0
  UGT2A1 WILD-TYPE     40     61     26     80     63     48     43     28
                  vv
clus               CLUS_9
  UGT2A1 MUTATED        1
  UGT2A1 WILD-TYPE     73
D1765V10, multiclass
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A1 MUTATED        0      0      0      1
  UGT2A1 WILD-TYPE     33     31     27     18
D1765V11, multiclass
[1] "Remove cluster labels:" "UGT2A1 MUTATED"        
clus
  UGT2A1 MUTATED UGT2A1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-G5-6641 
"UGT2A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A1 MUTATED        1      0      0      0
  UGT2A1 WILD-TYPE     53     10     24     22
D1765V12, multiclass
[1] "Remove cluster labels:" "UGT2A1 MUTATED"        
clus
  UGT2A1 MUTATED UGT2A1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-G5-6641 
"UGT2A1 WILD-TYPE" 

Clustering(1766) Variable = CXCR7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR7 MUTATED        2      0      1      2
  CXCR7 WILD-TYPE     44     58     63     41
D1766V1, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR7 MUTATED        0      2      3
  CXCR7 WILD-TYPE     51     81     74
D1766V2, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR7 MUTATED       11      6      2      2
  CXCR7 WILD-TYPE    167    177     99     18
D1766V3, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             6             177
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR7 MUTATED        6      3      5
  CXCR7 WILD-TYPE     81     77     95
D1766V4, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR7 MUTATED        4      4      7
  CXCR7 WILD-TYPE     85    156    131
D1766V5, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCR7 MUTATED        8      5      2
  CXCR7 WILD-TYPE    174    128     70
D1766V6, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR7 MUTATED        5      7      3      5
  CXCR7 WILD-TYPE    107     89     89    181
D1766V7, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CXCR7 MUTATED        3      1      7      1      3      2      3
  CXCR7 WILD-TYPE     57     49     42     39     60    123     96
D1766V8, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR7 MUTATED        8      2      1     10
  CXCR7 WILD-TYPE    122     76     67    186
D1766V9, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CXCR7 MUTATED        4      3      1      3      6      1      2      1
  CXCR7 WILD-TYPE     36     59     27     77     63     47     41     27
                 vv
clus              CLUS_9
  CXCR7 MUTATED        0
  CXCR7 WILD-TYPE     74
D1766V10, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR7 MUTATED        2      1      0      1
  CXCR7 WILD-TYPE     31     30     27     18
D1766V11, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCR7 MUTATED        2      1      1      0
  CXCR7 WILD-TYPE     52      9     23     22
D1766V12, multiclass
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1767) Variable = SSRP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSRP1 MUTATED        2      0      0      1
  SSRP1 WILD-TYPE     44     58     64     42
D1767V1, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSRP1 MUTATED        2      0      1
  SSRP1 WILD-TYPE     49     83     76
D1767V2, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSRP1 MUTATED       11      1      3      0
  SSRP1 WILD-TYPE    167    182     98     20
D1767V3, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSRP1 MUTATED        5      3      4
  SSRP1 WILD-TYPE     82     77     96
D1767V4, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSRP1 MUTATED        1      3      8
  SSRP1 WILD-TYPE     88    157    130
D1767V5, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSRP1 MUTATED        9      3      0
  SSRP1 WILD-TYPE    173    130     72
D1767V6, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSRP1 MUTATED        3      4      5      3
  SSRP1 WILD-TYPE    109     92     87    183
D1767V7, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSRP1 MUTATED        3      4      6      0      0      0      2
  SSRP1 WILD-TYPE     57     46     43     40     63    125     97
D1767V8, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSRP1 MUTATED        8      3      0      4
  SSRP1 WILD-TYPE    122     75     68    192
D1767V9, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SSRP1 MUTATED        0      3      2      3      5      1      1      0
  SSRP1 WILD-TYPE     40     59     26     77     64     47     42     28
                 vv
clus              CLUS_9
  SSRP1 MUTATED        0
  SSRP1 WILD-TYPE     74
D1767V10, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSRP1 MUTATED        2      0      0      2
  SSRP1 WILD-TYPE     31     31     27     17
D1767V11, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSRP1 MUTATED        3      0      1      0
  SSRP1 WILD-TYPE     51     10     23     22
D1767V12, multiclass
        clus
vv       SSRP1 MUTATED SSRP1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1768) Variable = IGFBP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP3 MUTATED        1      3      0      0
  IGFBP3 WILD-TYPE     45     55     64     43
D1768V1, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              3               55
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP3 MUTATED        1      3      0
  IGFBP3 WILD-TYPE     50     80     77
D1768V2, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP3 MUTATED        4      2      2      0
  IGFBP3 WILD-TYPE    174    181     99     20
D1768V3, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP3 MUTATED        2      1      2
  IGFBP3 WILD-TYPE     85     79     98
D1768V4, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP3 MUTATED        3      1      3
  IGFBP3 WILD-TYPE     86    159    135
D1768V5, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP3 MUTATED        4      1      2
  IGFBP3 WILD-TYPE    178    132     70
D1768V6, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP3 MUTATED        3      2      1      2
  IGFBP3 WILD-TYPE    109     94     91    184
D1768V7, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGFBP3 MUTATED        1      1      2      0      0      3      1
  IGFBP3 WILD-TYPE     59     49     47     40     63    122     98
D1768V8, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP3 MUTATED        2      0      1      5
  IGFBP3 WILD-TYPE    128     78     67    191
D1768V9, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IGFBP3 MUTATED        0      2      0      1      1      1      1      0
  IGFBP3 WILD-TYPE     40     60     28     79     68     47     42     28
                  vv
clus               CLUS_9
  IGFBP3 MUTATED        2
  IGFBP3 WILD-TYPE     72
D1768V10, multiclass
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP3 MUTATED        1      0      0      1
  IGFBP3 WILD-TYPE     32     31     27     18
D1768V11, multiclass
[1] "Remove cluster labels:" "IGFBP3 MUTATED"        
clus
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP3 MUTATED        2      0      0      0
  IGFBP3 WILD-TYPE     52     10     24     22
D1768V12, multiclass
[1] "Remove cluster labels:" "IGFBP3 MUTATED"        
clus
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 

Clustering(1769) Variable = RELA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELA MUTATED        0      0      0      1
  RELA WILD-TYPE     46     58     64     42
D1769V1, multiclass
[1] "Remove cluster labels:" "RELA MUTATED"          
clus
  RELA MUTATED RELA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RELA WILD-TYPE" "RELA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELA MUTATED        1      0      0
  RELA WILD-TYPE     50     83     77
D1769V2, multiclass
[1] "Remove cluster labels:" "RELA MUTATED"          
clus
  RELA MUTATED RELA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" "RELA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RELA WILD-TYPE" "RELA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELA MUTATED        7      3      0      0
  RELA WILD-TYPE    171    180    101     20
D1769V3, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            7            171
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELA MUTATED        0      2      6
  RELA WILD-TYPE     87     78     94
D1769V4, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            0             87
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELA MUTATED        1      4      4
  RELA WILD-TYPE     88    156    134
D1769V5, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELA MUTATED        4      4      1
  RELA WILD-TYPE    178    129     71
D1769V6, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELA MUTATED        2      4      2      2
  RELA WILD-TYPE    110     92     90    184
D1769V7, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RELA MUTATED        1      3      3      1      0      0      2
  RELA WILD-TYPE     59     47     46     39     63    125     97
D1769V8, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            1             59
  CLUS_2            3             47
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELA MUTATED        4      0      3      3
  RELA WILD-TYPE    126     78     65    193
D1769V9, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            3             65
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RELA MUTATED        2      0      0      1      5      0      2      0      0
  RELA WILD-TYPE     38     62     28     79     64     48     41     28     74
D1769V10, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELA MUTATED        1      0      1      1
  RELA WILD-TYPE     32     31     26     18
D1769V11, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELA MUTATED        0      0      2      1
  RELA WILD-TYPE     54     10     22     21
D1769V12, multiclass
        clus
vv       RELA MUTATED RELA WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1770) Variable = KCNA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        3      0      0      3
  KCNA3 WILD-TYPE     43     58     64     40
D1770V1, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        3      0      3
  KCNA3 WILD-TYPE     48     83     74
D1770V2, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED       14      1      4      1
  KCNA3 WILD-TYPE    164    182     97     19
D1770V3, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        5      1      6
  KCNA3 WILD-TYPE     82     79     94
D1770V4, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        2      5      6
  KCNA3 WILD-TYPE     87    155    132
D1770V5, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNA3 MUTATED        6      4      3
  KCNA3 WILD-TYPE    176    129     69
D1770V6, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        2      8      4      6
  KCNA3 WILD-TYPE    110     88     88    180
D1770V7, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KCNA3 MUTATED        2      4      6      0      3      0      5
  KCNA3 WILD-TYPE     58     46     43     40     60    125     94
D1770V8, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             4              46
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        6      5      1      7
  KCNA3 WILD-TYPE    124     73     67    189
D1770V9, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KCNA3 MUTATED        2      4      1      3      7      1      0      0
  KCNA3 WILD-TYPE     38     58     27     77     62     47     43     28
                 vv
clus              CLUS_9
  KCNA3 MUTATED        1
  KCNA3 WILD-TYPE     73
D1770V10, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        2      0      0      2
  KCNA3 WILD-TYPE     31     31     27     17
D1770V11, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNA3 MUTATED        2      0      2      0
  KCNA3 WILD-TYPE     52     10     22     22
D1770V12, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1771) Variable = CPT1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT1B MUTATED        2      0      0      1
  CPT1B WILD-TYPE     44     58     64     42
D1771V1, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPT1B MUTATED        3      0      0
  CPT1B WILD-TYPE     48     83     77
D1771V2, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT1B MUTATED        9      2      0      0
  CPT1B WILD-TYPE    169    181    101     20
D1771V3, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPT1B MUTATED        2      2      3
  CPT1B WILD-TYPE     85     78     97
D1771V4, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPT1B MUTATED        1      4      5
  CPT1B WILD-TYPE     88    156    133
D1771V5, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPT1B MUTATED        5      2      3
  CPT1B WILD-TYPE    177    131     69
D1771V6, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT1B MUTATED        2      2      3      4
  CPT1B WILD-TYPE    110     94     89    182
D1771V7, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPT1B MUTATED        0      0      5      1      1      0      4
  CPT1B WILD-TYPE     60     50     44     39     62    125     95
D1771V8, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT1B MUTATED        3      2      1      5
  CPT1B WILD-TYPE    127     76     67    191
D1771V9, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CPT1B MUTATED        1      3      0      0      6      0      1      0
  CPT1B WILD-TYPE     39     59     28     80     63     48     42     28
                 vv
clus              CLUS_9
  CPT1B MUTATED        0
  CPT1B WILD-TYPE     74
D1771V10, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT1B MUTATED        1      0      1      3
  CPT1B WILD-TYPE     32     31     26     16
D1771V11, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT1B MUTATED        3      1      1      0
  CPT1B WILD-TYPE     51      9     23     22
D1771V12, multiclass
        clus
vv       CPT1B MUTATED CPT1B WILD-TYPE
  CLUS_1             3              51
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1772) Variable = SLC14A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC14A1 MUTATED        1      0      1      0
  SLC14A1 WILD-TYPE     45     58     63     43
D1772V1, multiclass
[1] "Remove cluster labels:" "SLC14A1 MUTATED"       
clus
  SLC14A1 MUTATED SLC14A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A026 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AY-4071 
"SLC14A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC14A1 MUTATED        1      0      1
  SLC14A1 WILD-TYPE     50     83     76
D1772V2, multiclass
[1] "Remove cluster labels:" "SLC14A1 MUTATED"       
clus
  SLC14A1 MUTATED SLC14A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A026 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" "SLC14A1 WILD-TYPE" 
       TCGA-AY-4071 
"SLC14A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC14A1 MUTATED        5      2      0      0
  SLC14A1 WILD-TYPE    173    181    101     20
D1772V3, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC14A1 MUTATED        2      1      2
  SLC14A1 WILD-TYPE     85     79     98
D1772V4, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC14A1 MUTATED        0      3      2
  SLC14A1 WILD-TYPE     89    157    136
D1772V5, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC14A1 MUTATED        2      2      1
  SLC14A1 WILD-TYPE    180    131     71
D1772V6, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC14A1 MUTATED        2      1      2      2
  SLC14A1 WILD-TYPE    110     95     90    184
D1772V7, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC14A1 MUTATED        0      1      2      0      2      1      1
  SLC14A1 WILD-TYPE     60     49     47     40     61    124     98
D1772V8, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC14A1 MUTATED        1      3      1      2
  SLC14A1 WILD-TYPE    129     75     67    194
D1772V9, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC14A1 MUTATED        0      2      0      1      2      1      1      0
  SLC14A1 WILD-TYPE     40     60     28     79     67     47     42     28
                   vv
clus                CLUS_9
  SLC14A1 MUTATED        0
  SLC14A1 WILD-TYPE     74
D1772V10, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC14A1 MUTATED        1      1      0      1
  SLC14A1 WILD-TYPE     32     30     27     18
D1772V11, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC14A1 MUTATED        0      0      1      2
  SLC14A1 WILD-TYPE     54     10     23     20
D1772V12, multiclass
        clus
vv       SLC14A1 MUTATED SLC14A1 WILD-TYPE
  CLUS_1               0                54
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1773) Variable = PLEKHH2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH2 MUTATED        4      0      0      5
  PLEKHH2 WILD-TYPE     42     58     64     38
D1773V1, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH2 MUTATED        5      2      2
  PLEKHH2 WILD-TYPE     46     81     75
D1773V2, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH2 MUTATED       20      1      1      0
  PLEKHH2 WILD-TYPE    158    182    100     20
D1773V3, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1              20               158
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH2 MUTATED        6      2      4
  PLEKHH2 WILD-TYPE     81     78     96
D1773V4, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH2 MUTATED        3      9      7
  PLEKHH2 WILD-TYPE     86    151    131
D1773V5, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               9               151
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH2 MUTATED       10      8      1
  PLEKHH2 WILD-TYPE    172    125     71
D1773V6, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1              10               172
  CLUS_2               8               125
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH2 MUTATED        3      8      3      9
  PLEKHH2 WILD-TYPE    109     88     89    177
D1773V7, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               8                88
  CLUS_3               3                89
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLEKHH2 MUTATED        2      4      6      0      2      1      8
  PLEKHH2 WILD-TYPE     58     46     43     40     61    124     91
D1773V8, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               4                46
  CLUS_3               6                43
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               8                91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH2 MUTATED        6      4      1     11
  PLEKHH2 WILD-TYPE    124     74     67    185
D1773V9, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4              11               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLEKHH2 MUTATED        3      3      2      4      9      0      0      0
  PLEKHH2 WILD-TYPE     37     59     26     76     60     48     43     28
                   vv
clus                CLUS_9
  PLEKHH2 MUTATED        1
  PLEKHH2 WILD-TYPE     73
D1773V10, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               4                76
  CLUS_5               9                60
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH2 MUTATED        1      0      1      2
  PLEKHH2 WILD-TYPE     32     31     26     17
D1773V11, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH2 MUTATED        2      1      1      0
  PLEKHH2 WILD-TYPE     52      9     23     22
D1773V12, multiclass
        clus
vv       PLEKHH2 MUTATED PLEKHH2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1774) Variable = ESRP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        1      0      0      2
  ESRP2 WILD-TYPE     45     58     64     41
D1774V1, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP2 MUTATED        2      1      0
  ESRP2 WILD-TYPE     49     82     77
D1774V2, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        5      1      2      1
  ESRP2 WILD-TYPE    173    182     99     19
D1774V3, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP2 MUTATED        3      1      3
  ESRP2 WILD-TYPE     84     79     97
D1774V4, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP2 MUTATED        1      4      4
  ESRP2 WILD-TYPE     88    156    134
D1774V5, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP2 MUTATED        4      4      1
  ESRP2 WILD-TYPE    178    129     71
D1774V6, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        3      1      3      3
  ESRP2 WILD-TYPE    109     95     89    183
D1774V7, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESRP2 MUTATED        2      0      1      1      2      0      4
  ESRP2 WILD-TYPE     58     50     48     39     61    125     95
D1774V8, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        2      2      2      3
  ESRP2 WILD-TYPE    128     76     66    193
D1774V9, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ESRP2 MUTATED        2      2      1      0      2      0      1      0
  ESRP2 WILD-TYPE     38     60     27     80     67     48     42     28
                 vv
clus              CLUS_9
  ESRP2 MUTATED        1
  ESRP2 WILD-TYPE     73
D1774V10, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        1      0      1      2
  ESRP2 WILD-TYPE     32     31     26     17
D1774V11, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        3      0      0      1
  ESRP2 WILD-TYPE     51     10     24     21
D1774V12, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1775) Variable = MMP21 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP21 MUTATED        3      0      0      1
  MMP21 WILD-TYPE     43     58     64     42
D1775V1, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP21 MUTATED        2      1      1
  MMP21 WILD-TYPE     49     82     76
D1775V2, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP21 MUTATED       11      1      0      0
  MMP21 WILD-TYPE    167    182    101     20
D1775V3, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP21 MUTATED        4      1      3
  MMP21 WILD-TYPE     83     79     97
D1775V4, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP21 MUTATED        1      4      5
  MMP21 WILD-TYPE     88    156    133
D1775V5, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP21 MUTATED        4      5      1
  MMP21 WILD-TYPE    178    128     71
D1775V6, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP21 MUTATED        1      3      3      5
  MMP21 WILD-TYPE    111     93     89    181
D1775V7, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP21 MUTATED        2      1      3      1      1      1      3
  MMP21 WILD-TYPE     58     49     46     39     62    124     96
D1775V8, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP21 MUTATED        5      2      0      5
  MMP21 WILD-TYPE    125     76     68    191
D1775V9, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MMP21 MUTATED        1      3      0      1      5      1      0      0
  MMP21 WILD-TYPE     39     59     28     79     64     47     43     28
                 vv
clus              CLUS_9
  MMP21 MUTATED        1
  MMP21 WILD-TYPE     73
D1775V10, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP21 MUTATED        0      0      0      3
  MMP21 WILD-TYPE     33     31     27     16
D1775V11, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP21 MUTATED        2      0      1      0
  MMP21 WILD-TYPE     52     10     23     22
D1775V12, multiclass
        clus
vv       MMP21 MUTATED MMP21 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1776) Variable = IL6R MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6R MUTATED        1      1      0      1
  IL6R WILD-TYPE     45     57     64     42
D1776V1, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IL6R MUTATED        2      1      0
  IL6R WILD-TYPE     49     82     77
D1776V2, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6R MUTATED        7      1      0      0
  IL6R WILD-TYPE    171    182    101     20
D1776V3, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IL6R MUTATED        2      1      2
  IL6R WILD-TYPE     85     79     98
D1776V4, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IL6R MUTATED        3      2      2
  IL6R WILD-TYPE     86    158    136
D1776V5, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            3             86
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IL6R MUTATED        2      2      3
  IL6R WILD-TYPE    180    131     69
D1776V6, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6R MUTATED        1      1      2      4
  IL6R WILD-TYPE    111     95     90    182
D1776V7, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL6R MUTATED        1      0      3      0      0      1      3
  IL6R WILD-TYPE     59     50     46     40     63    124     96
D1776V8, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6R MUTATED        1      2      1      4
  IL6R WILD-TYPE    129     76     67    192
D1776V9, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            1            129
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IL6R MUTATED        0      2      0      0      3      1      0      0      2
  IL6R WILD-TYPE     40     60     28     80     66     47     43     28     72
D1776V10, multiclass
        clus
vv       IL6R MUTATED IL6R WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6R MUTATED        1      0      0      0
  IL6R WILD-TYPE     32     31     27     19
D1776V11, multiclass
[1] "Remove cluster labels:" "IL6R MUTATED"          
clus
  IL6R MUTATED IL6R WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A285     TCGA-DM-A28F 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-G5-6641 
"IL6R WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL6R MUTATED        0      0      0      1
  IL6R WILD-TYPE     54     10     24     21
D1776V12, multiclass
[1] "Remove cluster labels:" "IL6R MUTATED"          
clus
  IL6R MUTATED IL6R WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A285     TCGA-DM-A28F 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" "IL6R WILD-TYPE" 
    TCGA-G5-6641 
"IL6R WILD-TYPE" 

Clustering(1777) Variable = KSR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KSR2 MUTATED        1      1      0      2
  KSR2 WILD-TYPE     45     57     64     41
D1777V1, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KSR2 MUTATED        0      2      2
  KSR2 WILD-TYPE     51     81     75
D1777V2, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KSR2 MUTATED       18      1      2      0
  KSR2 WILD-TYPE    160    182     99     20
D1777V3, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KSR2 MUTATED        6      1     10
  KSR2 WILD-TYPE     81     79     90
D1777V4, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            1             79
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KSR2 MUTATED        1      6     10
  KSR2 WILD-TYPE     88    154    128
D1777V5, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KSR2 MUTATED        7      9      1
  KSR2 WILD-TYPE    175    124     71
D1777V6, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            9            124
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KSR2 MUTATED        1     10      5      5
  KSR2 WILD-TYPE    111     86     87    181
D1777V7, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2           10             86
  CLUS_3            5             87
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KSR2 MUTATED        1      5      8      1      2      2      2
  KSR2 WILD-TYPE     59     45     41     39     61    123     97
D1777V8, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            5             45
  CLUS_3            8             41
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KSR2 MUTATED        8      4      0      9
  KSR2 WILD-TYPE    122     74     68    187
D1777V9, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            4             74
  CLUS_3            0             68
  CLUS_4            9            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KSR2 MUTATED        1      2      1      5      6      1      3      0      2
  KSR2 WILD-TYPE     39     60     27     75     63     47     40     28     72
D1777V10, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            5             75
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KSR2 MUTATED        1      2      0      3
  KSR2 WILD-TYPE     32     29     27     16
D1777V11, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KSR2 MUTATED        3      0      2      1
  KSR2 WILD-TYPE     51     10     22     21
D1777V12, multiclass
        clus
vv       KSR2 MUTATED KSR2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1778) Variable = ZNF443 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF443 MUTATED        1      1      1      3
  ZNF443 WILD-TYPE     45     57     63     40
D1778V1, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF443 MUTATED        2      1      3
  ZNF443 WILD-TYPE     49     82     74
D1778V2, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF443 MUTATED        9      0      0      0
  ZNF443 WILD-TYPE    169    183    101     20
D1778V3, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF443 MUTATED        2      0      1
  ZNF443 WILD-TYPE     85     80     99
D1778V4, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF443 MUTATED        0      4      4
  ZNF443 WILD-TYPE     89    156    134
D1778V5, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF443 MUTATED        4      4      0
  ZNF443 WILD-TYPE    178    129     72
D1778V6, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF443 MUTATED        0      1      2      6
  ZNF443 WILD-TYPE    112     95     90    180
D1778V7, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF443 MUTATED        1      0      2      0      1      2      3
  ZNF443 WILD-TYPE     59     50     47     40     62    123     96
D1778V8, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF443 MUTATED        1      2      0      5
  ZNF443 WILD-TYPE    129     76     68    191
D1778V9, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF443 MUTATED        0      2      1      1      1      1      1      1
  ZNF443 WILD-TYPE     40     60     27     79     68     47     42     27
                  vv
clus               CLUS_9
  ZNF443 MUTATED        0
  ZNF443 WILD-TYPE     74
D1778V10, multiclass
        clus
vv       ZNF443 MUTATED ZNF443 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF443 MUTATED        1      0      0      0
  ZNF443 WILD-TYPE     32     31     27     19
D1778V11, multiclass
[1] "Remove cluster labels:" "ZNF443 MUTATED"        
clus
  ZNF443 MUTATED ZNF443 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF443 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF443 MUTATED        1      0      0      0
  ZNF443 WILD-TYPE     53     10     24     22
D1778V12, multiclass
[1] "Remove cluster labels:" "ZNF443 MUTATED"        
clus
  ZNF443 MUTATED ZNF443 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" "ZNF443 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF443 WILD-TYPE" 

Clustering(1779) Variable = PDSS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDSS2 MUTATED        1      0      0      1
  PDSS2 WILD-TYPE     45     58     64     42
D1779V1, multiclass
[1] "Remove cluster labels:" "PDSS2 MUTATED"         
clus
  PDSS2 MUTATED PDSS2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AY-4071 
"PDSS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDSS2 MUTATED        2      0      0
  PDSS2 WILD-TYPE     49     83     77
D1779V2, multiclass
[1] "Remove cluster labels:" "PDSS2 MUTATED"         
clus
  PDSS2 MUTATED PDSS2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00K 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" "PDSS2 WILD-TYPE" 
     TCGA-AY-4071 
"PDSS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDSS2 MUTATED        4      1      0      1
  PDSS2 WILD-TYPE    174    182    101     19
D1779V3, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDSS2 MUTATED        0      1      3
  PDSS2 WILD-TYPE     87     79     97
D1779V4, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDSS2 MUTATED        1      3      2
  PDSS2 WILD-TYPE     88    157    136
D1779V5, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDSS2 MUTATED        3      2      1
  PDSS2 WILD-TYPE    179    131     71
D1779V6, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDSS2 MUTATED        1      3      0      2
  PDSS2 WILD-TYPE    111     93     92    184
D1779V7, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDSS2 MUTATED        1      2      1      0      0      0      2
  PDSS2 WILD-TYPE     59     48     48     40     63    125     97
D1779V8, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDSS2 MUTATED        2      0      1      3
  PDSS2 WILD-TYPE    128     78     67    193
D1779V9, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PDSS2 MUTATED        0      0      1      1      2      0      2      0
  PDSS2 WILD-TYPE     40     62     27     79     67     48     41     28
                 vv
clus              CLUS_9
  PDSS2 MUTATED        0
  PDSS2 WILD-TYPE     74
D1779V10, multiclass
        clus
vv       PDSS2 MUTATED PDSS2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDSS2 MUTATED        0      0      0      0
  PDSS2 WILD-TYPE     33     31     27     19
D1779V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDSS2 MUTATED        0      0      0      0
  PDSS2 WILD-TYPE     54     10     24     22
D1779V12, multiclass

Clustering(1780) Variable = ACTN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTN1 MUTATED        0      0      0      3
  ACTN1 WILD-TYPE     46     58     64     40
D1780V1, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTN1 MUTATED        1      1      1
  ACTN1 WILD-TYPE     50     82     76
D1780V2, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTN1 MUTATED        9      1      2      1
  ACTN1 WILD-TYPE    169    182     99     19
D1780V3, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTN1 MUTATED        6      2      1
  ACTN1 WILD-TYPE     81     78     99
D1780V4, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTN1 MUTATED        2      6      4
  ACTN1 WILD-TYPE     87    154    134
D1780V5, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTN1 MUTATED        5      6      1
  ACTN1 WILD-TYPE    177    127     71
D1780V6, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTN1 MUTATED        3      1      4      5
  ACTN1 WILD-TYPE    109     95     88    181
D1780V7, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACTN1 MUTATED        3      1      3      0      1      0      5
  ACTN1 WILD-TYPE     57     49     46     40     62    125     94
D1780V8, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTN1 MUTATED        4      2      0      7
  ACTN1 WILD-TYPE    126     76     68    189
D1780V9, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACTN1 MUTATED        1      2      2      1      5      1      0      0
  ACTN1 WILD-TYPE     39     60     26     79     64     47     43     28
                 vv
clus              CLUS_9
  ACTN1 MUTATED        1
  ACTN1 WILD-TYPE     73
D1780V10, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTN1 MUTATED        3      0      0      1
  ACTN1 WILD-TYPE     30     31     27     18
D1780V11, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTN1 MUTATED        2      0      2      0
  ACTN1 WILD-TYPE     52     10     22     22
D1780V12, multiclass
        clus
vv       ACTN1 MUTATED ACTN1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1781) Variable = CCPG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        2      0      1      3
  CCPG1 WILD-TYPE     44     58     63     40
D1781V1, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCPG1 MUTATED        3      2      1
  CCPG1 WILD-TYPE     48     81     76
D1781V2, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED       10      1      1      0
  CCPG1 WILD-TYPE    168    182    100     20
D1781V3, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCPG1 MUTATED        4      0      2
  CCPG1 WILD-TYPE     83     80     98
D1781V4, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCPG1 MUTATED        0      1      7
  CCPG1 WILD-TYPE     89    159    131
D1781V5, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCPG1 MUTATED        5      3      0
  CCPG1 WILD-TYPE    177    130     72
D1781V6, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        0      4      3      5
  CCPG1 WILD-TYPE    112     92     89    181
D1781V7, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCPG1 MUTATED        0      1      5      1      0      1      4
  CCPG1 WILD-TYPE     60     49     44     39     63    124     95
D1781V8, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        2      3      2      4
  CCPG1 WILD-TYPE    128     75     66    192
D1781V9, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCPG1 MUTATED        0      2      1      1      4      0      0      1
  CCPG1 WILD-TYPE     40     60     27     79     65     48     43     27
                 vv
clus              CLUS_9
  CCPG1 MUTATED        2
  CCPG1 WILD-TYPE     72
D1781V10, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        2      0      0      1
  CCPG1 WILD-TYPE     31     31     27     18
D1781V11, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCPG1 MUTATED        3      0      0      0
  CCPG1 WILD-TYPE     51     10     24     22
D1781V12, multiclass
        clus
vv       CCPG1 MUTATED CCPG1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1782) Variable = PIGC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGC MUTATED        0      0      0      0
  PIGC WILD-TYPE     46     58     64     43
D1782V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGC MUTATED        0      0      0
  PIGC WILD-TYPE     51     83     77
D1782V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGC MUTATED        3      0      1      0
  PIGC WILD-TYPE    175    183    100     20
D1782V3, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGC MUTATED        1      1      2
  PIGC WILD-TYPE     86     79     98
D1782V4, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGC MUTATED        0      3      1
  PIGC WILD-TYPE     89    157    137
D1782V5, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGC MUTATED        1      2      1
  PIGC WILD-TYPE    181    131     71
D1782V6, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGC MUTATED        1      2      1      0
  PIGC WILD-TYPE    111     94     91    186
D1782V7, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIGC MUTATED        1      1      1      0      1      0      0
  PIGC WILD-TYPE     59     49     48     40     62    125     99
D1782V8, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGC MUTATED        4      0      0      0
  PIGC WILD-TYPE    126     78     68    196
D1782V9, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PIGC MUTATED        1      0      0      1      1      1      0      0      0
  PIGC WILD-TYPE     39     62     28     79     68     47     43     28     74
D1782V10, multiclass
        clus
vv       PIGC MUTATED PIGC WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGC MUTATED        0      0      0      1
  PIGC WILD-TYPE     33     31     27     18
D1782V11, multiclass
[1] "Remove cluster labels:" "PIGC MUTATED"          
clus
  PIGC MUTATED PIGC WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-G5-6641 
"PIGC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGC MUTATED        0      0      1      0
  PIGC WILD-TYPE     54     10     23     22
D1782V12, multiclass
[1] "Remove cluster labels:" "PIGC MUTATED"          
clus
  PIGC MUTATED PIGC WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" "PIGC WILD-TYPE" 
    TCGA-G5-6641 
"PIGC WILD-TYPE" 

Clustering(1783) Variable = CNOT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        1      0      0      0
  CNOT3 WILD-TYPE     45     58     64     43
D1783V1, multiclass
[1] "Remove cluster labels:" "CNOT3 MUTATED"         
clus
  CNOT3 MUTATED CNOT3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        1      0      0
  CNOT3 WILD-TYPE     50     83     77
D1783V2, multiclass
[1] "Remove cluster labels:" "CNOT3 MUTATED"         
clus
  CNOT3 MUTATED CNOT3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        5      2      1      0
  CNOT3 WILD-TYPE    173    181    100     20
D1783V3, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        2      2      2
  CNOT3 WILD-TYPE     85     78     98
D1783V4, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        2      0      5
  CNOT3 WILD-TYPE     87    160    133
D1783V5, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0             160
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT3 MUTATED        6      1      0
  CNOT3 WILD-TYPE    176    132     72
D1783V6, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        2      2      2      2
  CNOT3 WILD-TYPE    110     94     90    184
D1783V7, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNOT3 MUTATED        0      0      3      1      2      0      2
  CNOT3 WILD-TYPE     60     50     46     39     61    125     97
D1783V8, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        3      2      0      3
  CNOT3 WILD-TYPE    127     76     68    193
D1783V9, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNOT3 MUTATED        1      2      1      0      4      0      0      0
  CNOT3 WILD-TYPE     39     60     27     80     65     48     43     28
                 vv
clus              CLUS_9
  CNOT3 MUTATED        0
  CNOT3 WILD-TYPE     74
D1783V10, multiclass
        clus
vv       CNOT3 MUTATED CNOT3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        0      0      0      1
  CNOT3 WILD-TYPE     33     31     27     18
D1783V11, multiclass
[1] "Remove cluster labels:" "CNOT3 MUTATED"         
clus
  CNOT3 MUTATED CNOT3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6681      TCGA-DC-6682 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-G5-6641 
"CNOT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT3 MUTATED        1      0      0      0
  CNOT3 WILD-TYPE     53     10     24     22
D1783V12, multiclass
[1] "Remove cluster labels:" "CNOT3 MUTATED"         
clus
  CNOT3 MUTATED CNOT3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6681      TCGA-DC-6682 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" "CNOT3 WILD-TYPE" 
     TCGA-G5-6641 
"CNOT3 WILD-TYPE" 

Clustering(1784) Variable = TYW3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYW3 MUTATED        0      0      0      0
  TYW3 WILD-TYPE     46     58     64     43
D1784V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TYW3 MUTATED        0      0      0
  TYW3 WILD-TYPE     51     83     77
D1784V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYW3 MUTATED        3      2      1      1
  TYW3 WILD-TYPE    175    181    100     19
D1784V3, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TYW3 MUTATED        5      2      0
  TYW3 WILD-TYPE     82     78    100
D1784V4, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TYW3 MUTATED        0      1      5
  TYW3 WILD-TYPE     89    159    133
D1784V5, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TYW3 MUTATED        5      1      0
  TYW3 WILD-TYPE    177    132     72
D1784V6, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYW3 MUTATED        2      1      4      0
  TYW3 WILD-TYPE    110     95     88    186
D1784V7, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            4             88
  CLUS_4            0            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TYW3 MUTATED        1      1      2      1      2      0      0
  TYW3 WILD-TYPE     59     49     47     39     61    125     99
D1784V8, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYW3 MUTATED        4      2      0      1
  TYW3 WILD-TYPE    126     76     68    195
D1784V9, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TYW3 MUTATED        1      2      1      1      1      0      1      0      0
  TYW3 WILD-TYPE     39     60     27     79     68     48     42     28     74
D1784V10, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYW3 MUTATED        1      2      0      2
  TYW3 WILD-TYPE     32     29     27     17
D1784V11, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYW3 MUTATED        4      0      1      0
  TYW3 WILD-TYPE     50     10     23     22
D1784V12, multiclass
        clus
vv       TYW3 MUTATED TYW3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1785) Variable = LPPR4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPPR4 MUTATED        5      3      1      4
  LPPR4 WILD-TYPE     41     55     63     39
D1785V1, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             3              55
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPPR4 MUTATED        8      2      3
  LPPR4 WILD-TYPE     43     81     74
D1785V2, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             8              43
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPPR4 MUTATED       18      4      5      0
  LPPR4 WILD-TYPE    160    179     96     20
D1785V3, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             4             179
  CLUS_3             5              96
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPPR4 MUTATED        6      0      8
  LPPR4 WILD-TYPE     81     80     92
D1785V4, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             0              80
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPPR4 MUTATED        7      6      6
  LPPR4 WILD-TYPE     82    154    132
D1785V5, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             7              82
  CLUS_2             6             154
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LPPR4 MUTATED        7      6      6
  LPPR4 WILD-TYPE    175    127     66
D1785V6, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPPR4 MUTATED        3      8      5     11
  LPPR4 WILD-TYPE    109     88     87    175
D1785V7, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LPPR4 MUTATED        2      2      6      1      2      3     11
  LPPR4 WILD-TYPE     58     48     43     39     61    122     88
D1785V8, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPPR4 MUTATED        9      3      1     13
  LPPR4 WILD-TYPE    121     75     67    183
D1785V9, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LPPR4 MUTATED        4      3      1      2      8      4      0      2
  LPPR4 WILD-TYPE     36     59     27     78     61     44     43     26
                 vv
clus              CLUS_9
  LPPR4 MUTATED        2
  LPPR4 WILD-TYPE     72
D1785V10, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             8              61
  CLUS_6             4              44
  CLUS_7             0              43
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPPR4 MUTATED        1      1      0      2
  LPPR4 WILD-TYPE     32     30     27     17
D1785V11, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LPPR4 MUTATED        3      0      1      0
  LPPR4 WILD-TYPE     51     10     23     22
D1785V12, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1786) Variable = UBR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR2 MUTATED        2      0      1      5
  UBR2 WILD-TYPE     44     58     63     38
D1786V1, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR2 MUTATED        3      2      3
  UBR2 WILD-TYPE     48     81     74
D1786V2, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR2 MUTATED        9      7      3      0
  UBR2 WILD-TYPE    169    176     98     20
D1786V3, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            7            176
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR2 MUTATED        4      4      3
  UBR2 WILD-TYPE     83     76     97
D1786V4, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            4             76
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR2 MUTATED        1      8      6
  UBR2 WILD-TYPE     88    152    132
D1786V5, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            8            152
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBR2 MUTATED        5      9      1
  UBR2 WILD-TYPE    177    124     71
D1786V6, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            9            124
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR2 MUTATED        5      2      4      7
  UBR2 WILD-TYPE    107     94     88    179
D1786V7, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBR2 MUTATED        5      2      2      0      3      1      5
  UBR2 WILD-TYPE     55     48     47     40     60    124     94
D1786V8, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            5             55
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR2 MUTATED        5      4      1      8
  UBR2 WILD-TYPE    125     74     67    188
D1786V9, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UBR2 MUTATED        0      4      1      4      4      1      1      1      2
  UBR2 WILD-TYPE     40     58     27     76     65     47     42     27     72
D1786V10, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            4             76
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR2 MUTATED        1      1      2      1
  UBR2 WILD-TYPE     32     30     25     18
D1786V11, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBR2 MUTATED        1      1      2      1
  UBR2 WILD-TYPE     53      9     22     21
D1786V12, multiclass
        clus
vv       UBR2 MUTATED UBR2 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1787) Variable = GPBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPBP1 MUTATED        1      0      0      0
  GPBP1 WILD-TYPE     45     58     64     43
D1787V1, multiclass
[1] "Remove cluster labels:" "GPBP1 MUTATED"         
clus
  GPBP1 MUTATED GPBP1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPBP1 MUTATED        1      0      0
  GPBP1 WILD-TYPE     50     83     77
D1787V2, multiclass
[1] "Remove cluster labels:" "GPBP1 MUTATED"         
clus
  GPBP1 MUTATED GPBP1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"GPBP1 WILD-TYPE" "GPBP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPBP1 MUTATED        9      2      2      0
  GPBP1 WILD-TYPE    169    181     99     20
D1787V3, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPBP1 MUTATED        5      0      6
  GPBP1 WILD-TYPE     82     80     94
D1787V4, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPBP1 MUTATED        3      3      5
  GPBP1 WILD-TYPE     86    157    133
D1787V5, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPBP1 MUTATED        4      5      2
  GPBP1 WILD-TYPE    178    128     70
D1787V6, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPBP1 MUTATED        2      8      1      2
  GPBP1 WILD-TYPE    110     88     91    184
D1787V7, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPBP1 MUTATED        2      3      3      1      1      0      3
  GPBP1 WILD-TYPE     58     47     46     39     62    125     96
D1787V8, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPBP1 MUTATED        3      1      3      6
  GPBP1 WILD-TYPE    127     77     65    190
D1787V9, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             3              65
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPBP1 MUTATED        2      0      0      1      6      1      2      0
  GPBP1 WILD-TYPE     38     62     28     79     63     47     41     28
                 vv
clus              CLUS_9
  GPBP1 MUTATED        1
  GPBP1 WILD-TYPE     73
D1787V10, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPBP1 MUTATED        1      1      1      2
  GPBP1 WILD-TYPE     32     30     26     17
D1787V11, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPBP1 MUTATED        2      0      3      0
  GPBP1 WILD-TYPE     52     10     21     22
D1787V12, multiclass
        clus
vv       GPBP1 MUTATED GPBP1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1788) Variable = SPAM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAM1 MUTATED        1      1      0      2
  SPAM1 WILD-TYPE     45     57     64     41
D1788V1, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAM1 MUTATED        1      1      2
  SPAM1 WILD-TYPE     50     82     75
D1788V2, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAM1 MUTATED        9      4      0      0
  SPAM1 WILD-TYPE    169    179    101     20
D1788V3, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAM1 MUTATED        3      3      3
  SPAM1 WILD-TYPE     84     77     97
D1788V4, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAM1 MUTATED        3      4      5
  SPAM1 WILD-TYPE     86    156    133
D1788V5, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAM1 MUTATED        6      3      3
  SPAM1 WILD-TYPE    176    130     69
D1788V6, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAM1 MUTATED        2      2      4      5
  SPAM1 WILD-TYPE    110     94     88    181
D1788V7, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPAM1 MUTATED        2      1      3      1      2      1      3
  SPAM1 WILD-TYPE     58     49     46     39     61    124     96
D1788V8, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAM1 MUTATED        5      2      1      4
  SPAM1 WILD-TYPE    125     76     67    192
D1788V9, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPAM1 MUTATED        2      3      1      1      3      1      0      0
  SPAM1 WILD-TYPE     38     59     27     79     66     47     43     28
                 vv
clus              CLUS_9
  SPAM1 MUTATED        1
  SPAM1 WILD-TYPE     73
D1788V10, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAM1 MUTATED        0      1      0      2
  SPAM1 WILD-TYPE     33     30     27     17
D1788V11, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAM1 MUTATED        3      0      0      0
  SPAM1 WILD-TYPE     51     10     24     22
D1788V12, multiclass
        clus
vv       SPAM1 MUTATED SPAM1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1789) Variable = ZFP91 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP91 MUTATED        1      1      0      0
  ZFP91 WILD-TYPE     45     57     64     43
D1789V1, multiclass
[1] "Remove cluster labels:" "ZFP91 MUTATED"         
clus
  ZFP91 MUTATED ZFP91 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AY-4071 
"ZFP91 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP91 MUTATED        0      2      0
  ZFP91 WILD-TYPE     51     81     77
D1789V2, multiclass
[1] "Remove cluster labels:" "ZFP91 MUTATED"         
clus
  ZFP91 MUTATED ZFP91 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AY-4071 
"ZFP91 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP91 MUTATED        5      3      0      0
  ZFP91 WILD-TYPE    173    180    101     20
D1789V3, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP91 MUTATED        1      1      3
  ZFP91 WILD-TYPE     86     79     97
D1789V4, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP91 MUTATED        0      2      5
  ZFP91 WILD-TYPE     89    158    133
D1789V5, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP91 MUTATED        4      3      0
  ZFP91 WILD-TYPE    178    130     72
D1789V6, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP91 MUTATED        3      1      2      2
  ZFP91 WILD-TYPE    109     95     90    184
D1789V7, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFP91 MUTATED        1      1      1      0      2      2      1
  ZFP91 WILD-TYPE     59     49     48     40     61    123     98
D1789V8, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP91 MUTATED        3      2      0      3
  ZFP91 WILD-TYPE    127     76     68    193
D1789V9, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZFP91 MUTATED        0      3      0      0      2      2      0      0
  ZFP91 WILD-TYPE     40     59     28     80     67     46     43     28
                 vv
clus              CLUS_9
  ZFP91 MUTATED        1
  ZFP91 WILD-TYPE     73
D1789V10, multiclass
        clus
vv       ZFP91 MUTATED ZFP91 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP91 MUTATED        0      1      0      0
  ZFP91 WILD-TYPE     33     30     27     19
D1789V11, multiclass
[1] "Remove cluster labels:" "ZFP91 MUTATED"         
clus
  ZFP91 MUTATED ZFP91 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-G5-6641 
"ZFP91 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP91 MUTATED        0      1      0      0
  ZFP91 WILD-TYPE     54      9     24     22
D1789V12, multiclass
[1] "Remove cluster labels:" "ZFP91 MUTATED"         
clus
  ZFP91 MUTATED ZFP91 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" "ZFP91 WILD-TYPE" 
     TCGA-G5-6641 
"ZFP91 WILD-TYPE" 

Clustering(1790) Variable = OR13C5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR13C5 MUTATED        1      0      1      1
  OR13C5 WILD-TYPE     45     58     63     42
D1790V1, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR13C5 MUTATED        1      1      1
  OR13C5 WILD-TYPE     50     82     76
D1790V2, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR13C5 MUTATED        4      4      3      1
  OR13C5 WILD-TYPE    174    179     98     19
D1790V3, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR13C5 MUTATED        4      3      3
  OR13C5 WILD-TYPE     83     77     97
D1790V4, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR13C5 MUTATED        1      4      8
  OR13C5 WILD-TYPE     88    156    130
D1790V5, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR13C5 MUTATED        9      3      1
  OR13C5 WILD-TYPE    173    130     71
D1790V6, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR13C5 MUTATED        3      1      5      4
  OR13C5 WILD-TYPE    109     95     87    182
D1790V7, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              1               95
  CLUS_3              5               87
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR13C5 MUTATED        3      0      3      0      4      2      1
  OR13C5 WILD-TYPE     57     50     46     40     59    123     98
D1790V8, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              4               59
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR13C5 MUTATED        5      3      1      4
  OR13C5 WILD-TYPE    125     75     67    192
D1790V9, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR13C5 MUTATED        0      4      0      2      4      1      1      0
  OR13C5 WILD-TYPE     40     58     28     78     65     47     42     28
                  vv
clus               CLUS_9
  OR13C5 MUTATED        1
  OR13C5 WILD-TYPE     73
D1790V10, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR13C5 MUTATED        1      3      0      0
  OR13C5 WILD-TYPE     32     28     27     19
D1790V11, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               28
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR13C5 MUTATED        3      0      0      1
  OR13C5 WILD-TYPE     51     10     24     21
D1790V12, multiclass
        clus
vv       OR13C5 MUTATED OR13C5 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1791) Variable = SLC43A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC43A3 MUTATED        4      0      1      2
  SLC43A3 WILD-TYPE     42     58     63     41
D1791V1, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC43A3 MUTATED        4      2      1
  SLC43A3 WILD-TYPE     47     81     76
D1791V2, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC43A3 MUTATED        8      0      3      2
  SLC43A3 WILD-TYPE    170    183     98     18
D1791V3, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               3                98
  CLUS_4               2                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC43A3 MUTATED        0      0      6
  SLC43A3 WILD-TYPE     87     80     94
D1791V4, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC43A3 MUTATED        1      6      1
  SLC43A3 WILD-TYPE     88    154    137
D1791V5, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC43A3 MUTATED        1      3      4
  SLC43A3 WILD-TYPE    181    130     68
D1791V6, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               3               130
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC43A3 MUTATED        1      3      2      7
  SLC43A3 WILD-TYPE    111     93     90    179
D1791V7, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC43A3 MUTATED        1      0      3      1      1      1      6
  SLC43A3 WILD-TYPE     59     50     46     39     62    124     93
D1791V8, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC43A3 MUTATED        5      1      1      6
  SLC43A3 WILD-TYPE    125     77     67    190
D1791V9, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC43A3 MUTATED        2      1      1      3      5      0      0      0
  SLC43A3 WILD-TYPE     38     61     27     77     64     48     43     28
                   vv
clus                CLUS_9
  SLC43A3 MUTATED        1
  SLC43A3 WILD-TYPE     73
D1791V10, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC43A3 MUTATED        1      0      0      2
  SLC43A3 WILD-TYPE     32     31     27     17
D1791V11, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC43A3 MUTATED        2      0      1      0
  SLC43A3 WILD-TYPE     52     10     23     22
D1791V12, multiclass
        clus
vv       SLC43A3 MUTATED SLC43A3 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1792) Variable = GOLGA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA1 MUTATED        2      0      0      1
  GOLGA1 WILD-TYPE     44     58     64     42
D1792V1, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGA1 MUTATED        2      1      0
  GOLGA1 WILD-TYPE     49     82     77
D1792V2, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA1 MUTATED        5      2      0      1
  GOLGA1 WILD-TYPE    173    181    101     19
D1792V3, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGA1 MUTATED        1      1      3
  GOLGA1 WILD-TYPE     86     79     97
D1792V4, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGA1 MUTATED        0      1      4
  GOLGA1 WILD-TYPE     89    159    134
D1792V5, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLGA1 MUTATED        4      1      0
  GOLGA1 WILD-TYPE    178    132     72
D1792V6, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA1 MUTATED        0      3      2      3
  GOLGA1 WILD-TYPE    112     93     90    183
D1792V7, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GOLGA1 MUTATED        1      0      2      1      1      1      2
  GOLGA1 WILD-TYPE     59     50     47     39     62    124     97
D1792V8, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA1 MUTATED        4      0      1      2
  GOLGA1 WILD-TYPE    126     78     67    194
D1792V9, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GOLGA1 MUTATED        0      1      0      2      1      0      2      1
  GOLGA1 WILD-TYPE     40     61     28     78     68     48     41     27
                  vv
clus               CLUS_9
  GOLGA1 MUTATED        0
  GOLGA1 WILD-TYPE     74
D1792V10, multiclass
        clus
vv       GOLGA1 MUTATED GOLGA1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA1 MUTATED        0      1      1      0
  GOLGA1 WILD-TYPE     33     30     26     19
D1792V11, multiclass
[1] "Remove cluster labels:" "GOLGA1 MUTATED"        
clus
  GOLGA1 MUTATED GOLGA1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLGA1 MUTATED        1      1      0      0
  GOLGA1 WILD-TYPE     53      9     24     22
D1792V12, multiclass
[1] "Remove cluster labels:" "GOLGA1 MUTATED"        
clus
  GOLGA1 MUTATED GOLGA1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6601 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" "GOLGA1 WILD-TYPE" 

Clustering(1793) Variable = C5ORF36 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF36 MUTATED        2      0      1      2
  C5ORF36 WILD-TYPE     44     58     63     41
D1793V1, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF36 MUTATED        2      1      2
  C5ORF36 WILD-TYPE     49     82     75
D1793V2, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF36 MUTATED       16      1      2      1
  C5ORF36 WILD-TYPE    162    182     99     19
D1793V3, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1              16               162
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF36 MUTATED        7      0      8
  C5ORF36 WILD-TYPE     80     80     92
D1793V4, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               0                80
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF36 MUTATED        2      2      9
  C5ORF36 WILD-TYPE     87    158    129
D1793V5, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               2               158
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF36 MUTATED        8      4      1
  C5ORF36 WILD-TYPE    174    129     71
D1793V6, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF36 MUTATED        0      5     10      5
  C5ORF36 WILD-TYPE    112     91     82    181
D1793V7, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               5                91
  CLUS_3              10                82
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C5ORF36 MUTATED        0      1     11      1      2      1      4
  C5ORF36 WILD-TYPE     60     49     38     39     61    124     95
D1793V8, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3              11                38
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF36 MUTATED        8      5      0      6
  C5ORF36 WILD-TYPE    122     73     68    190
D1793V9, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               5                73
  CLUS_3               0                68
  CLUS_4               6               190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C5ORF36 MUTATED        0      5      1      6      6      0      1      0
  C5ORF36 WILD-TYPE     40     57     27     74     63     48     42     28
                   vv
clus                CLUS_9
  C5ORF36 MUTATED        0
  C5ORF36 WILD-TYPE     74
D1793V10, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               5                57
  CLUS_3               1                27
  CLUS_4               6                74
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF36 MUTATED        2      0      1      7
  C5ORF36 WILD-TYPE     31     31     26     12
D1793V11, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF36 MUTATED        6      0      3      1
  C5ORF36 WILD-TYPE     48     10     21     21
D1793V12, multiclass
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  CLUS_1               6                48
  CLUS_2               0                10
  CLUS_3               3                21
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1794) Variable = CPLX4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX4 MUTATED        0      0      1      1
  CPLX4 WILD-TYPE     46     58     63     42
D1794V1, multiclass
[1] "Remove cluster labels:" "CPLX4 MUTATED"         
clus
  CPLX4 MUTATED CPLX4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AY-4071 
"CPLX4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX4 MUTATED        0      1      1
  CPLX4 WILD-TYPE     51     82     76
D1794V2, multiclass
[1] "Remove cluster labels:" "CPLX4 MUTATED"         
clus
  CPLX4 MUTATED CPLX4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AY-4071 
"CPLX4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX4 MUTATED        5      0      0      0
  CPLX4 WILD-TYPE    173    183    101     20
D1794V3, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX4 MUTATED        0      0      2
  CPLX4 WILD-TYPE     87     80     98
D1794V4, multiclass
[1] "Remove cluster labels:" "CPLX4 MUTATED"         
clus
  CPLX4 MUTATED CPLX4 WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AA-3663      TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AD-6890      TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AF-2693      TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CK-4948      TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CK-5913      TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CK-6746      TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CL-5917      TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5860 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863      TCGA-CM-5864 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162      TCGA-CM-6163 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166      TCGA-CM-6167 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170      TCGA-CM-6171 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675      TCGA-CM-6676 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-6929      TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-D5-7000      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6155 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6160      TCGA-DC-6681 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0X9      TCGA-DM-A0XD 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4      TCGA-DM-A1D6 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB      TCGA-DM-A282 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DM-A285      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DM-A28H      TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-EI-6508      TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-F4-6809      TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-G4-6307      TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-G4-6317      TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" "CPLX4 WILD-TYPE" 
     TCGA-G5-6641 
"CPLX4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX4 MUTATED        1      3      1
  CPLX4 WILD-TYPE     88    157    137
D1794V5, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX4 MUTATED        1      3      1
  CPLX4 WILD-TYPE    181    130     71
D1794V6, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX4 MUTATED        2      2      0      1
  CPLX4 WILD-TYPE    110     94     92    185
D1794V7, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPLX4 MUTATED        2      0      1      0      0      0      2
  CPLX4 WILD-TYPE     58     50     48     40     63    125     97
D1794V8, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX4 MUTATED        2      0      0      3
  CPLX4 WILD-TYPE    128     78     68    193
D1794V9, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CPLX4 MUTATED        0      0      1      1      1      1      0      0
  CPLX4 WILD-TYPE     40     62     27     79     68     47     43     28
                 vv
clus              CLUS_9
  CPLX4 MUTATED        1
  CPLX4 WILD-TYPE     73
D1794V10, multiclass
        clus
vv       CPLX4 MUTATED CPLX4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX4 MUTATED        0      0      0      0
  CPLX4 WILD-TYPE     33     31     27     19
D1794V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX4 MUTATED        0      0      0      0
  CPLX4 WILD-TYPE     54     10     24     22
D1794V12, multiclass

Clustering(1795) Variable = TEX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        0      0      0      2
  TEX2 WILD-TYPE     46     58     64     41
D1795V1, multiclass
[1] "Remove cluster labels:" "TEX2 MUTATED"          
clus
  TEX2 MUTATED TEX2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AY-4071 
"TEX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEX2 MUTATED        0      1      1
  TEX2 WILD-TYPE     51     82     76
D1795V2, multiclass
[1] "Remove cluster labels:" "TEX2 MUTATED"          
clus
  TEX2 MUTATED TEX2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-AY-4071 
"TEX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED       11      0      0      1
  TEX2 WILD-TYPE    167    183    101     19
D1795V3, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEX2 MUTATED        4      0      6
  TEX2 WILD-TYPE     83     80     94
D1795V4, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEX2 MUTATED        1      4      6
  TEX2 WILD-TYPE     88    156    132
D1795V5, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TEX2 MUTATED        7      4      0
  TEX2 WILD-TYPE    175    129     72
D1795V6, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        0      8      3      1
  TEX2 WILD-TYPE    112     88     89    185
D1795V7, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            8             88
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEX2 MUTATED        0      1      7      1      1      0      2
  TEX2 WILD-TYPE     60     49     42     39     62    125     97
D1795V8, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            7             42
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        4      3      0      5
  TEX2 WILD-TYPE    126     75     68    191
D1795V9, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TEX2 MUTATED        2      4      1      0      4      0      0      0      1
  TEX2 WILD-TYPE     38     58     27     80     65     48     43     28     73
D1795V10, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        0      0      0      3
  TEX2 WILD-TYPE     33     31     27     16
D1795V11, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX2 MUTATED        2      0      1      0
  TEX2 WILD-TYPE     52     10     23     22
D1795V12, multiclass
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1796) Variable = ARHGAP28 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP28 MUTATED        4      0      0      3
  ARHGAP28 WILD-TYPE     42     58     64     40
D1796V1, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP28 MUTATED        5      1      1
  ARHGAP28 WILD-TYPE     46     82     76
D1796V2, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP28 MUTATED       14      0      0      0
  ARHGAP28 WILD-TYPE    164    183    101     20
D1796V3, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1               14                164
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP28 MUTATED        3      0      4
  ARHGAP28 WILD-TYPE     84     80     96
D1796V4, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                0                 80
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP28 MUTATED        2      4      7
  ARHGAP28 WILD-TYPE     87    156    131
D1796V5, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                4                156
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP28 MUTATED        8      3      2
  ARHGAP28 WILD-TYPE    174    130     70
D1796V6, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                8                174
  CLUS_2                3                130
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP28 MUTATED        0      4      3      7
  ARHGAP28 WILD-TYPE    112     92     89    179
D1796V7, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                4                 92
  CLUS_3                3                 89
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP28 MUTATED        1      0      7      0      0      0      6
  ARHGAP28 WILD-TYPE     59     50     42     40     63    125     93
D1796V8, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                7                 42
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                6                 93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP28 MUTATED        4      2      0      8
  ARHGAP28 WILD-TYPE    126     76     68    188
D1796V9, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                8                188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP28 MUTATED        0      3      1      0      8      0      1      1
  ARHGAP28 WILD-TYPE     40     59     27     80     61     48     42     27
                    vv
clus                 CLUS_9
  ARHGAP28 MUTATED        0
  ARHGAP28 WILD-TYPE     74
D1796V10, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                8                 61
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP28 MUTATED        2      0      0      3
  ARHGAP28 WILD-TYPE     31     31     27     16
D1796V11, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP28 MUTATED        3      0      2      0
  ARHGAP28 WILD-TYPE     51     10     22     22
D1796V12, multiclass
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1797) Variable = STK33 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK33 MUTATED        2      0      0      1
  STK33 WILD-TYPE     44     58     64     42
D1797V1, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK33 MUTATED        2      1      0
  STK33 WILD-TYPE     49     82     77
D1797V2, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK33 MUTATED        9      1      4      0
  STK33 WILD-TYPE    169    182     97     20
D1797V3, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK33 MUTATED        5      2      6
  STK33 WILD-TYPE     82     78     94
D1797V4, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK33 MUTATED        1      8      6
  STK33 WILD-TYPE     88    152    132
D1797V5, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK33 MUTATED        5      5      5
  STK33 WILD-TYPE    177    128     67
D1797V6, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK33 MUTATED        6      4      3      3
  STK33 WILD-TYPE    106     92     89    183
D1797V7, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK33 MUTATED        5      4      2      0      2      0      3
  STK33 WILD-TYPE     55     46     47     40     61    125     96
D1797V8, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             4              46
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK33 MUTATED        8      4      1      3
  STK33 WILD-TYPE    122     74     67    193
D1797V9, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STK33 MUTATED        2      3      3      4      2      2      0      0
  STK33 WILD-TYPE     38     59     25     76     67     46     43     28
                 vv
clus              CLUS_9
  STK33 MUTATED        0
  STK33 WILD-TYPE     74
D1797V10, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK33 MUTATED        0      0      2      1
  STK33 WILD-TYPE     33     31     25     18
D1797V11, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK33 MUTATED        1      0      1      1
  STK33 WILD-TYPE     53     10     23     21
D1797V12, multiclass
        clus
vv       STK33 MUTATED STK33 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1798) Variable = GNG12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        0      0      0      0
  GNG12 WILD-TYPE     46     58     64     43
D1798V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED        0      0      0
  GNG12 WILD-TYPE     51     83     77
D1798V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        8      0      0      0
  GNG12 WILD-TYPE    170    183    101     20
D1798V3, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED        1      0      7
  GNG12 WILD-TYPE     86     80     93
D1798V4, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED        0      3      4
  GNG12 WILD-TYPE     89    157    134
D1798V5, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED        4      3      0
  GNG12 WILD-TYPE    178    130     72
D1798V6, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        0      6      2      0
  GNG12 WILD-TYPE    112     90     90    186
D1798V7, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNG12 MUTATED        0      0      8      0      0      0      0
  GNG12 WILD-TYPE     60     50     41     40     63    125     99
D1798V8, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        7      1      0      0
  GNG12 WILD-TYPE    123     77     68    196
D1798V9, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GNG12 MUTATED        1      1      0      0      4      0      2      0
  GNG12 WILD-TYPE     39     61     28     80     65     48     41     28
                 vv
clus              CLUS_9
  GNG12 MUTATED        0
  GNG12 WILD-TYPE     74
D1798V10, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        1      0      0      3
  GNG12 WILD-TYPE     32     31     27     16
D1798V11, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        2      0      2      0
  GNG12 WILD-TYPE     52     10     22     22
D1798V12, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1799) Variable = FAM70A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70A MUTATED        0      0      0      2
  FAM70A WILD-TYPE     46     58     64     41
D1799V1, multiclass
[1] "Remove cluster labels:" "FAM70A MUTATED"        
clus
  FAM70A MUTATED FAM70A WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AY-4071 
"FAM70A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70A MUTATED        1      0      1
  FAM70A WILD-TYPE     50     83     76
D1799V2, multiclass
[1] "Remove cluster labels:" "FAM70A MUTATED"        
clus
  FAM70A MUTATED FAM70A WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AY-4071 
"FAM70A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70A MUTATED        6      0      2      0
  FAM70A WILD-TYPE    172    183     99     20
D1799V3, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70A MUTATED        2      3      1
  FAM70A WILD-TYPE     85     77     99
D1799V4, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              2               85
  CLUS_2              3               77
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70A MUTATED        0      2      4
  FAM70A WILD-TYPE     89    158    134
D1799V5, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70A MUTATED        3      3      0
  FAM70A WILD-TYPE    179    130     72
D1799V6, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70A MUTATED        3      2      1      2
  FAM70A WILD-TYPE    109     94     91    184
D1799V7, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM70A MUTATED        2      2      1      0      1      0      2
  FAM70A WILD-TYPE     58     48     48     40     62    125     97
D1799V8, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70A MUTATED        3      1      1      2
  FAM70A WILD-TYPE    127     77     67    194
D1799V9, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM70A MUTATED        1      1      2      0      1      0      1      0
  FAM70A WILD-TYPE     39     61     26     80     68     48     42     28
                  vv
clus               CLUS_9
  FAM70A MUTATED        1
  FAM70A WILD-TYPE     73
D1799V10, multiclass
        clus
vv       FAM70A MUTATED FAM70A WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70A MUTATED        0      0      0      1
  FAM70A WILD-TYPE     33     31     27     18
D1799V11, multiclass
[1] "Remove cluster labels:" "FAM70A MUTATED"        
clus
  FAM70A MUTATED FAM70A WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-G5-6641 
"FAM70A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70A MUTATED        0      0      1      0
  FAM70A WILD-TYPE     54     10     23     22
D1799V12, multiclass
[1] "Remove cluster labels:" "FAM70A MUTATED"        
clus
  FAM70A MUTATED FAM70A WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" "FAM70A WILD-TYPE" 
      TCGA-G5-6641 
"FAM70A WILD-TYPE" 

Clustering(1800) Variable = ACPP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPP MUTATED        3      0      0      1
  ACPP WILD-TYPE     43     58     64     42
D1800V1, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPP MUTATED        2      1      1
  ACPP WILD-TYPE     49     82     76
D1800V2, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPP MUTATED        4      0      0      0
  ACPP WILD-TYPE    174    183    101     20
D1800V3, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPP MUTATED        0      0      0
  ACPP WILD-TYPE     87     80    100
D1800V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPP MUTATED        0      1      1
  ACPP WILD-TYPE     89    159    137
D1800V5, multiclass
[1] "Remove cluster labels:" "ACPP MUTATED"          
clus
  ACPP MUTATED ACPP WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00E     TCGA-AA-A00F 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022     TCGA-AA-A024 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900     TCGA-AD-6548 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965     TCGA-AF-2689 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654     TCGA-AF-6136 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574     TCGA-AG-3578 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731     TCGA-AG-3742 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3885 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W     TCGA-AG-A01Y 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-6004 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4682 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6621 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918     TCGA-CM-4743 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G5-6641 
"ACPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACPP MUTATED        1      1      0
  ACPP WILD-TYPE    181    132     72
D1800V6, multiclass
[1] "Remove cluster labels:" "ACPP MUTATED"          
clus
  ACPP MUTATED ACPP WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00E     TCGA-AA-A00F 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022     TCGA-AA-A024 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900     TCGA-AD-6548 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965     TCGA-AF-2689 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654     TCGA-AF-6136 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574     TCGA-AG-3578 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731     TCGA-AG-3742 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3885 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W     TCGA-AG-A01Y 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-6004 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4682 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6621 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918     TCGA-CM-4743 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" "ACPP WILD-TYPE" 
    TCGA-G5-6641 
"ACPP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPP MUTATED        0      0      0      4
  ACPP WILD-TYPE    112     96     92    182
D1800V7, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            0             92
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACPP MUTATED        1      0      0      0      0      1      2
  ACPP WILD-TYPE     59     50     49     40     63    124     97
D1800V8, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPP MUTATED        0      0      0      3
  ACPP WILD-TYPE    130     78     68    193
D1800V9, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            0            130
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ACPP MUTATED        0      0      0      1      2      0      0      0      0
  ACPP WILD-TYPE     40     62     28     79     67     48     43     28     74
D1800V10, multiclass
        clus
vv       ACPP MUTATED ACPP WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPP MUTATED        0      0      0      0
  ACPP WILD-TYPE     33     31     27     19
D1800V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACPP MUTATED        0      0      0      0
  ACPP WILD-TYPE     54     10     24     22
D1800V12, multiclass

Clustering(1801) Variable = RUNDC2A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNDC2A MUTATED        0      1      0      2
  RUNDC2A WILD-TYPE     46     57     64     41
D1801V1, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RUNDC2A MUTATED        1      0      2
  RUNDC2A WILD-TYPE     50     83     75
D1801V2, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               1                50
  CLUS_2               0                83
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNDC2A MUTATED        6      1      0      0
  RUNDC2A WILD-TYPE    172    182    101     20
D1801V3, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               6               172
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RUNDC2A MUTATED        3      0      1
  RUNDC2A WILD-TYPE     84     80     99
D1801V4, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RUNDC2A MUTATED        1      2      4
  RUNDC2A WILD-TYPE     88    158    134
D1801V5, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RUNDC2A MUTATED        3      3      1
  RUNDC2A WILD-TYPE    179    130     71
D1801V6, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNDC2A MUTATED        0      2      1      4
  RUNDC2A WILD-TYPE    112     94     91    182
D1801V7, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               1                91
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNDC2A MUTATED        1      2      1      0      0      1      2
  RUNDC2A WILD-TYPE     59     48     48     40     63    124     97
D1801V8, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNDC2A MUTATED        1      1      0      3
  RUNDC2A WILD-TYPE    129     77     68    193
D1801V9, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RUNDC2A MUTATED        1      1      0      0      1      0      0      0
  RUNDC2A WILD-TYPE     39     61     28     80     68     48     43     28
                   vv
clus                CLUS_9
  RUNDC2A MUTATED        2
  RUNDC2A WILD-TYPE     72
D1801V10, multiclass
        clus
vv       RUNDC2A MUTATED RUNDC2A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNDC2A MUTATED        1      0      0      0
  RUNDC2A WILD-TYPE     32     31     27     19
D1801V11, multiclass
[1] "Remove cluster labels:" "RUNDC2A MUTATED"       
clus
  RUNDC2A MUTATED RUNDC2A WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6676 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-G5-6641 
"RUNDC2A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNDC2A MUTATED        1      0      0      0
  RUNDC2A WILD-TYPE     53     10     24     22
D1801V12, multiclass
[1] "Remove cluster labels:" "RUNDC2A MUTATED"       
clus
  RUNDC2A MUTATED RUNDC2A WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6676 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" "RUNDC2A WILD-TYPE" 
       TCGA-G5-6641 
"RUNDC2A WILD-TYPE" 

Clustering(1802) Variable = IMMT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IMMT MUTATED        3      0      0      3
  IMMT WILD-TYPE     43     58     64     40
D1802V1, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IMMT MUTATED        3      1      2
  IMMT WILD-TYPE     48     82     75
D1802V2, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IMMT MUTATED        5      1      2      0
  IMMT WILD-TYPE    173    182     99     20
D1802V3, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IMMT MUTATED        1      0      1
  IMMT WILD-TYPE     86     80     99
D1802V4, multiclass
[1] "Remove cluster labels:" "IMMT MUTATED"          
clus
  IMMT MUTATED IMMT WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AD-6890     TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AF-2693     TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-4681     TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CK-4948     TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CK-5913     TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CK-6746     TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CL-5917     TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-5341     TCGA-CM-5344 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A28H     TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G5-6641 
"IMMT WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IMMT MUTATED        0      2      3
  IMMT WILD-TYPE     89    158    135
D1802V5, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            158
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IMMT MUTATED        3      2      0
  IMMT WILD-TYPE    179    131     72
D1802V6, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IMMT MUTATED        0      0      1      7
  IMMT WILD-TYPE    112     96     91    179
D1802V7, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            1             91
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IMMT MUTATED        1      0      1      0      0      1      5
  IMMT WILD-TYPE     59     50     48     40     63    124     94
D1802V8, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IMMT MUTATED        1      0      0      7
  IMMT WILD-TYPE    129     78     68    189
D1802V9, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IMMT MUTATED        0      0      2      1      5      0      0      0      0
  IMMT WILD-TYPE     40     62     26     79     64     48     43     28     74
D1802V10, multiclass
        clus
vv       IMMT MUTATED IMMT WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IMMT MUTATED        1      0      0      0
  IMMT WILD-TYPE     32     31     27     19
D1802V11, multiclass
[1] "Remove cluster labels:" "IMMT MUTATED"          
clus
  IMMT MUTATED IMMT WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6303     TCGA-G4-6306 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G5-6641 
"IMMT WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IMMT MUTATED        1      0      0      0
  IMMT WILD-TYPE     53     10     24     22
D1802V12, multiclass
[1] "Remove cluster labels:" "IMMT MUTATED"          
clus
  IMMT MUTATED IMMT WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6303     TCGA-G4-6306 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" "IMMT WILD-TYPE" 
    TCGA-G5-6641 
"IMMT WILD-TYPE" 

Clustering(1803) Variable = COLEC12 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC12 MUTATED        4      0      2      2
  COLEC12 WILD-TYPE     42     58     62     41
D1803V1, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               2                62
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC12 MUTATED        4      2      2
  COLEC12 WILD-TYPE     47     81     75
D1803V2, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC12 MUTATED       15      2      2      0
  COLEC12 WILD-TYPE    163    181     99     20
D1803V3, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC12 MUTATED        5      2      5
  COLEC12 WILD-TYPE     82     78     95
D1803V4, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC12 MUTATED        0      4      9
  COLEC12 WILD-TYPE     89    156    129
D1803V5, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COLEC12 MUTATED        7      4      2
  COLEC12 WILD-TYPE    175    129     70
D1803V6, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC12 MUTATED        2      6      3      8
  COLEC12 WILD-TYPE    110     90     89    178
D1803V7, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               6                90
  CLUS_3               3                89
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COLEC12 MUTATED        2      2      7      0      1      2      5
  COLEC12 WILD-TYPE     58     48     42     40     62    123     94
D1803V8, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               7                42
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC12 MUTATED        7      2      2      8
  COLEC12 WILD-TYPE    123     76     66    188
D1803V9, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               2                76
  CLUS_3               2                66
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COLEC12 MUTATED        0      4      1      2      7      1      1      1
  COLEC12 WILD-TYPE     40     58     27     78     62     47     42     27
                   vv
clus                CLUS_9
  COLEC12 MUTATED        2
  COLEC12 WILD-TYPE     72
D1803V10, multiclass
        clus
vv       COLEC12 MUTATED COLEC12 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               7                62
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC12 MUTATED        0      0      0      0
  COLEC12 WILD-TYPE     33     31     27     19
D1803V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COLEC12 MUTATED        0      0      0      0
  COLEC12 WILD-TYPE     54     10     24     22
D1803V12, multiclass

Clustering(1804) Variable = SCYL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL2 MUTATED        2      1      0      1
  SCYL2 WILD-TYPE     44     57     64     42
D1804V1, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCYL2 MUTATED        1      2      1
  SCYL2 WILD-TYPE     50     81     76
D1804V2, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL2 MUTATED       12      4      3      1
  SCYL2 WILD-TYPE    166    179     98     19
D1804V3, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCYL2 MUTATED        4      4      8
  SCYL2 WILD-TYPE     83     76     92
D1804V4, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             4              76
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCYL2 MUTATED        3      7      7
  SCYL2 WILD-TYPE     86    153    131
D1804V5, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCYL2 MUTATED        8      8      1
  SCYL2 WILD-TYPE    174    125     71
D1804V6, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             8             125
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL2 MUTATED        5      8      4      4
  SCYL2 WILD-TYPE    107     88     88    182
D1804V7, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             8              88
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SCYL2 MUTATED        7      2      7      1      1      2      1
  SCYL2 WILD-TYPE     53     48     42     39     62    123     98
D1804V8, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL2 MUTATED        9      2      2      8
  SCYL2 WILD-TYPE    121     76     66    188
D1804V9, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SCYL2 MUTATED        4      3      0      2      6      2      2      0
  SCYL2 WILD-TYPE     36     59     28     78     63     46     41     28
                 vv
clus              CLUS_9
  SCYL2 MUTATED        2
  SCYL2 WILD-TYPE     72
D1804V10, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL2 MUTATED        0      1      1      2
  SCYL2 WILD-TYPE     33     30     26     17
D1804V11, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCYL2 MUTATED        3      0      1      0
  SCYL2 WILD-TYPE     51     10     23     22
D1804V12, multiclass
        clus
vv       SCYL2 MUTATED SCYL2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1805) Variable = CAPRIN2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN2 MUTATED        3      0      1      4
  CAPRIN2 WILD-TYPE     43     58     63     39
D1805V1, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN2 MUTATED        4      2      2
  CAPRIN2 WILD-TYPE     47     81     75
D1805V2, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN2 MUTATED       13      3      1      0
  CAPRIN2 WILD-TYPE    165    180    100     20
D1805V3, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN2 MUTATED        5      2      2
  CAPRIN2 WILD-TYPE     82     78     98
D1805V4, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN2 MUTATED        0      4     11
  CAPRIN2 WILD-TYPE     89    156    127
D1805V5, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3              11               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CAPRIN2 MUTATED       10      4      1
  CAPRIN2 WILD-TYPE    172    129     71
D1805V6, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1              10               172
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN2 MUTATED        1      3      5      8
  CAPRIN2 WILD-TYPE    111     93     87    178
D1805V7, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               5                87
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CAPRIN2 MUTATED        2      1      5      0      2      1      6
  CAPRIN2 WILD-TYPE     58     49     44     40     61    124     93
D1805V8, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN2 MUTATED        3      4      1      8
  CAPRIN2 WILD-TYPE    127     74     67    188
D1805V9, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               4                74
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CAPRIN2 MUTATED        0      5      1      2      5      1      1      0
  CAPRIN2 WILD-TYPE     40     57     27     78     64     47     42     28
                   vv
clus                CLUS_9
  CAPRIN2 MUTATED        1
  CAPRIN2 WILD-TYPE     73
D1805V10, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               5                57
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN2 MUTATED        1      0      1      2
  CAPRIN2 WILD-TYPE     32     31     26     17
D1805V11, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPRIN2 MUTATED        2      1      0      1
  CAPRIN2 WILD-TYPE     52      9     24     21
D1805V12, multiclass
        clus
vv       CAPRIN2 MUTATED CAPRIN2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1806) Variable = CNOT10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT10 MUTATED        0      0      0      2
  CNOT10 WILD-TYPE     46     58     64     41
D1806V1, multiclass
[1] "Remove cluster labels:" "CNOT10 MUTATED"        
clus
  CNOT10 MUTATED CNOT10 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AY-4071 
"CNOT10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT10 MUTATED        1      1      0
  CNOT10 WILD-TYPE     50     82     77
D1806V2, multiclass
[1] "Remove cluster labels:" "CNOT10 MUTATED"        
clus
  CNOT10 MUTATED CNOT10 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" "CNOT10 WILD-TYPE" 
      TCGA-AY-4071 
"CNOT10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT10 MUTATED        8      0      2      0
  CNOT10 WILD-TYPE    170    183     99     20
D1806V3, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT10 MUTATED        5      1      1
  CNOT10 WILD-TYPE     82     79     99
D1806V4, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT10 MUTATED        0      2      7
  CNOT10 WILD-TYPE     89    158    131
D1806V5, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT10 MUTATED        6      3      0
  CNOT10 WILD-TYPE    176    130     72
D1806V6, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT10 MUTATED        1      3      3      3
  CNOT10 WILD-TYPE    111     93     89    183
D1806V7, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNOT10 MUTATED        1      1      3      1      1      0      3
  CNOT10 WILD-TYPE     59     49     46     39     62    125     96
D1806V8, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT10 MUTATED        2      2      2      3
  CNOT10 WILD-TYPE    128     76     66    193
D1806V9, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNOT10 MUTATED        0      2      1      1      1      0      3      0
  CNOT10 WILD-TYPE     40     60     27     79     68     48     40     28
                  vv
clus               CLUS_9
  CNOT10 MUTATED        1
  CNOT10 WILD-TYPE     73
D1806V10, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              3               40
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT10 MUTATED        1      0      1      1
  CNOT10 WILD-TYPE     32     31     26     18
D1806V11, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT10 MUTATED        2      0      1      0
  CNOT10 WILD-TYPE     52     10     23     22
D1806V12, multiclass
        clus
vv       CNOT10 MUTATED CNOT10 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1807) Variable = LUZP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        1      0      1      3
  LUZP1 WILD-TYPE     45     58     63     40
D1807V1, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        1      1      3
  LUZP1 WILD-TYPE     50     82     74
D1807V2, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED       14      1      1      0
  LUZP1 WILD-TYPE    164    182    100     20
D1807V3, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1            14             164
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        4      0      6
  LUZP1 WILD-TYPE     83     80     94
D1807V4, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        5      6      5
  LUZP1 WILD-TYPE     84    154    133
D1807V5, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LUZP1 MUTATED        5      9      2
  LUZP1 WILD-TYPE    177    124     70
D1807V6, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             9             124
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        1      7      3      5
  LUZP1 WILD-TYPE    111     89     89    181
D1807V7, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LUZP1 MUTATED        1      3      6      0      0      1      5
  LUZP1 WILD-TYPE     59     47     43     40     63    124     94
D1807V8, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        4      2      1      9
  LUZP1 WILD-TYPE    126     76     67    187
D1807V9, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LUZP1 MUTATED        1      2      2      1      2      2      1      1
  LUZP1 WILD-TYPE     39     60     26     79     67     46     42     27
                 vv
clus              CLUS_9
  LUZP1 MUTATED        4
  LUZP1 WILD-TYPE     70
D1807V10, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        1      0      0      2
  LUZP1 WILD-TYPE     32     31     27     17
D1807V11, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUZP1 MUTATED        2      0      1      0
  LUZP1 WILD-TYPE     52     10     23     22
D1807V12, multiclass
        clus
vv       LUZP1 MUTATED LUZP1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1808) Variable = VCX3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX3A MUTATED        0      0      0      0
  VCX3A WILD-TYPE     46     58     64     43
D1808V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VCX3A MUTATED        0      0      0
  VCX3A WILD-TYPE     51     83     77
D1808V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX3A MUTATED        1      1      3      0
  VCX3A WILD-TYPE    177    182     98     20
D1808V3, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             1             177
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VCX3A MUTATED        0      3      2
  VCX3A WILD-TYPE     87     77     98
D1808V4, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             0              87
  CLUS_2             3              77
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VCX3A MUTATED        2      0      1
  VCX3A WILD-TYPE     87    160    137
D1808V5, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             2              87
  CLUS_2             0             160
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VCX3A MUTATED        3      0      0
  VCX3A WILD-TYPE    179    133     72
D1808V6, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX3A MUTATED        0      2      1      2
  VCX3A WILD-TYPE    112     94     91    184
D1808V7, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VCX3A MUTATED        0      2      0      0      1      2      0
  VCX3A WILD-TYPE     60     48     49     40     62    123     99
D1808V8, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX3A MUTATED        2      2      0      1
  VCX3A WILD-TYPE    128     76     68    195
D1808V9, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VCX3A MUTATED        1      1      0      1      0      0      0      1
  VCX3A WILD-TYPE     39     61     28     79     69     48     43     27
                 vv
clus              CLUS_9
  VCX3A MUTATED        1
  VCX3A WILD-TYPE     73
D1808V10, multiclass
        clus
vv       VCX3A MUTATED VCX3A WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX3A MUTATED        0      1      0      0
  VCX3A WILD-TYPE     33     30     27     19
D1808V11, multiclass
[1] "Remove cluster labels:" "VCX3A MUTATED"         
clus
  VCX3A MUTATED VCX3A WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-G5-6641 
"VCX3A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCX3A MUTATED        0      1      0      0
  VCX3A WILD-TYPE     54      9     24     22
D1808V12, multiclass
[1] "Remove cluster labels:" "VCX3A MUTATED"         
clus
  VCX3A MUTATED VCX3A WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" "VCX3A WILD-TYPE" 
     TCGA-G5-6641 
"VCX3A WILD-TYPE" 

Clustering(1809) Variable = BAP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        0      0      0      2
  BAP1 WILD-TYPE     46     58     64     41
D1809V1, multiclass
[1] "Remove cluster labels:" "BAP1 MUTATED"          
clus
  BAP1 MUTATED BAP1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AY-4071 
"BAP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        1      1      0
  BAP1 WILD-TYPE     50     82     77
D1809V2, multiclass
[1] "Remove cluster labels:" "BAP1 MUTATED"          
clus
  BAP1 MUTATED BAP1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" "BAP1 WILD-TYPE" 
    TCGA-AY-4071 
"BAP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        9      2      1      2
  BAP1 WILD-TYPE    169    181    100     18
D1809V3, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        8      1      3
  BAP1 WILD-TYPE     79     79     97
D1809V4, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        1      5      6
  BAP1 WILD-TYPE     88    155    132
D1809V5, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAP1 MUTATED        7      4      1
  BAP1 WILD-TYPE    175    129     71
D1809V6, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        2      5      5      2
  BAP1 WILD-TYPE    110     91     87    184
D1809V7, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BAP1 MUTATED        2      2      6      1      1      0      2
  BAP1 WILD-TYPE     58     48     43     39     62    125     97
D1809V8, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        7      2      1      4
  BAP1 WILD-TYPE    123     76     67    192
D1809V9, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BAP1 MUTATED        2      2      2      3      3      1      1      0      0
  BAP1 WILD-TYPE     38     60     26     77     66     47     42     28     74
D1809V10, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        2      0      1      2
  BAP1 WILD-TYPE     31     31     26     17
D1809V11, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAP1 MUTATED        2      0      1      2
  BAP1 WILD-TYPE     52     10     23     20
D1809V12, multiclass
        clus
vv       BAP1 MUTATED BAP1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            2             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1810) Variable = CDHR5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR5 MUTATED        3      0      1      1
  CDHR5 WILD-TYPE     43     58     63     42
D1810V1, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR5 MUTATED        4      1      0
  CDHR5 WILD-TYPE     47     82     77
D1810V2, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR5 MUTATED        9      2      0      0
  CDHR5 WILD-TYPE    169    181    101     20
D1810V3, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR5 MUTATED        1      1      4
  CDHR5 WILD-TYPE     86     79     96
D1810V4, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR5 MUTATED        2      3      6
  CDHR5 WILD-TYPE     87    157    132
D1810V5, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR5 MUTATED        8      1      2
  CDHR5 WILD-TYPE    174    132     70
D1810V6, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR5 MUTATED        1      5      1      5
  CDHR5 WILD-TYPE    111     91     91    181
D1810V7, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDHR5 MUTATED        1      1      4      0      0      1      5
  CDHR5 WILD-TYPE     59     49     45     40     63    124     94
D1810V8, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR5 MUTATED        3      1      2      6
  CDHR5 WILD-TYPE    127     77     66    190
D1810V9, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDHR5 MUTATED        1      1      1      0      5      1      1      1
  CDHR5 WILD-TYPE     39     61     27     80     64     47     42     27
                 vv
clus              CLUS_9
  CDHR5 MUTATED        1
  CDHR5 WILD-TYPE     73
D1810V10, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR5 MUTATED        2      0      0      1
  CDHR5 WILD-TYPE     31     31     27     18
D1810V11, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR5 MUTATED        1      0      1      1
  CDHR5 WILD-TYPE     53     10     23     21
D1810V12, multiclass
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1811) Variable = SLCO1B3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        3      0      3      3
  SLCO1B3 WILD-TYPE     43     58     61     40
D1811V1, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               3                61
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B3 MUTATED        4      3      2
  SLCO1B3 WILD-TYPE     47     80     75
D1811V2, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               3                80
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        9      5      4      1
  SLCO1B3 WILD-TYPE    169    178     97     19
D1811V3, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               5               178
  CLUS_3               4                97
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B3 MUTATED        3      3      4
  SLCO1B3 WILD-TYPE     84     77     96
D1811V4, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               3                77
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B3 MUTATED        2      9      5
  SLCO1B3 WILD-TYPE     87    151    133
D1811V5, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               9               151
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO1B3 MUTATED        6      8      2
  SLCO1B3 WILD-TYPE    176    125     70
D1811V6, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               8               125
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        2      2      4     11
  SLCO1B3 WILD-TYPE    110     94     88    175
D1811V7, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4              11               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLCO1B3 MUTATED        1      1      3      0      4      4      6
  SLCO1B3 WILD-TYPE     59     49     46     40     59    121     93
D1811V8, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               4                59
  CLUS_6               4               121
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        3      3      2     10
  SLCO1B3 WILD-TYPE    127     75     66    186
D1811V9, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               3                75
  CLUS_3               2                66
  CLUS_4              10               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLCO1B3 MUTATED        1      4      1      2      5      1      1      0
  SLCO1B3 WILD-TYPE     39     58     27     78     64     47     42     28
                   vv
clus                CLUS_9
  SLCO1B3 MUTATED        3
  SLCO1B3 WILD-TYPE     71
D1811V10, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               3                71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        1      3      0      1
  SLCO1B3 WILD-TYPE     32     28     27     18
D1811V11, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                28
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO1B3 MUTATED        3      1      1      0
  SLCO1B3 WILD-TYPE     51      9     23     22
D1811V12, multiclass
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1812) Variable = TRAF3IP3 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP3 MUTATED        4      0      0      2
  TRAF3IP3 WILD-TYPE     42     58     64     41
D1812V1, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP3 MUTATED        4      1      1
  TRAF3IP3 WILD-TYPE     47     82     76
D1812V2, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP3 MUTATED        9      3      0      1
  TRAF3IP3 WILD-TYPE    169    180    101     19
D1812V3, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP3 MUTATED        3      1      3
  TRAF3IP3 WILD-TYPE     84     79     97
D1812V4, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP3 MUTATED        0      5      7
  TRAF3IP3 WILD-TYPE     89    155    131
D1812V5, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                5                155
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP3 MUTATED        7      4      1
  TRAF3IP3 WILD-TYPE    175    129     71
D1812V6, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                7                175
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP3 MUTATED        2      2      4      5
  TRAF3IP3 WILD-TYPE    110     94     88    181
D1812V7, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                2                 94
  CLUS_3                4                 88
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRAF3IP3 MUTATED        3      1      3      0      1      1      4
  TRAF3IP3 WILD-TYPE     57     49     46     40     62    124     95
D1812V8, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                1                 49
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP3 MUTATED        4      3      0      6
  TRAF3IP3 WILD-TYPE    126     75     68    190
D1812V9, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                4                126
  CLUS_2                3                 75
  CLUS_3                0                 68
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRAF3IP3 MUTATED        1      3      1      1      5      1      0      1
  TRAF3IP3 WILD-TYPE     39     59     27     79     64     47     43     27
                    vv
clus                 CLUS_9
  TRAF3IP3 MUTATED        0
  TRAF3IP3 WILD-TYPE     74
D1812V10, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 59
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP3 MUTATED        1      0      0      2
  TRAF3IP3 WILD-TYPE     32     31     27     17
D1812V11, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP3 MUTATED        2      0      0      1
  TRAF3IP3 WILD-TYPE     52     10     24     21
D1812V12, multiclass
        clus
vv       TRAF3IP3 MUTATED TRAF3IP3 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1813) Variable = RXRA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        1      0      0      0
  RXRA WILD-TYPE     45     58     64     43
D1813V1, multiclass
[1] "Remove cluster labels:" "RXRA MUTATED"          
clus
  RXRA MUTATED RXRA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        1      0      0
  RXRA WILD-TYPE     50     83     77
D1813V2, multiclass
[1] "Remove cluster labels:" "RXRA MUTATED"          
clus
  RXRA MUTATED RXRA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        8      0      0      0
  RXRA WILD-TYPE    170    183    101     20
D1813V3, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            8            170
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        4      0      3
  RXRA WILD-TYPE     83     80     97
D1813V4, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        1      1      5
  RXRA WILD-TYPE     88    159    133
D1813V5, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        4      2      1
  RXRA WILD-TYPE    178    131     71
D1813V6, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4            178
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        0      6      1      1
  RXRA WILD-TYPE    112     90     91    185
D1813V7, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            0            112
  CLUS_2            6             90
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RXRA MUTATED        0      1      6      0      0      0      1
  RXRA WILD-TYPE     60     49     43     40     63    125     98
D1813V8, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        4      1      0      3
  RXRA WILD-TYPE    126     77     68    193
D1813V9, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RXRA MUTATED        0      2      0      0      5      0      0      0      1
  RXRA WILD-TYPE     40     60     28     80     64     48     43     28     73
D1813V10, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        0      0      0      1
  RXRA WILD-TYPE     33     31     27     18
D1813V11, multiclass
[1] "Remove cluster labels:" "RXRA MUTATED"          
clus
  RXRA MUTATED RXRA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-G5-6641 
"RXRA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        0      0      1      0
  RXRA WILD-TYPE     54     10     23     22
D1813V12, multiclass
[1] "Remove cluster labels:" "RXRA MUTATED"          
clus
  RXRA MUTATED RXRA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" "RXRA WILD-TYPE" 
    TCGA-G5-6641 
"RXRA WILD-TYPE" 

Clustering(1814) Variable = DOPEY2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOPEY2 MUTATED        0      0      0      4
  DOPEY2 WILD-TYPE     46     58     64     39
D1814V1, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOPEY2 MUTATED        3      0      1
  DOPEY2 WILD-TYPE     48     83     76
D1814V2, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOPEY2 MUTATED       14      0      2      0
  DOPEY2 WILD-TYPE    164    183     99     20
D1814V3, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOPEY2 MUTATED        4      0      7
  DOPEY2 WILD-TYPE     83     80     93
D1814V4, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOPEY2 MUTATED        3      5      5
  DOPEY2 WILD-TYPE     86    155    133
D1814V5, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              5              155
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DOPEY2 MUTATED        7      5      1
  DOPEY2 WILD-TYPE    175    128     71
D1814V6, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOPEY2 MUTATED        2      8      2      4
  DOPEY2 WILD-TYPE    110     88     90    182
D1814V7, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DOPEY2 MUTATED        2      2      5      2      1      0      4
  DOPEY2 WILD-TYPE     58     48     44     38     62    125     95
D1814V8, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOPEY2 MUTATED        8      3      0      4
  DOPEY2 WILD-TYPE    122     75     68    192
D1814V9, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DOPEY2 MUTATED        1      4      0      2      7      1      0      0
  DOPEY2 WILD-TYPE     39     58     28     78     62     47     43     28
                  vv
clus               CLUS_9
  DOPEY2 MUTATED        0
  DOPEY2 WILD-TYPE     74
D1814V10, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOPEY2 MUTATED        1      1      0      2
  DOPEY2 WILD-TYPE     32     30     27     17
D1814V11, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOPEY2 MUTATED        2      0      1      1
  DOPEY2 WILD-TYPE     52     10     23     21
D1814V12, multiclass
        clus
vv       DOPEY2 MUTATED DOPEY2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1815) Variable = LCN9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCN9 MUTATED        1      0      0      0
  LCN9 WILD-TYPE     45     58     64     43
D1815V1, multiclass
[1] "Remove cluster labels:" "LCN9 MUTATED"          
clus
  LCN9 MUTATED LCN9 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCN9 MUTATED        0      1      0
  LCN9 WILD-TYPE     51     82     77
D1815V2, multiclass
[1] "Remove cluster labels:" "LCN9 MUTATED"          
clus
  LCN9 MUTATED LCN9 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCN9 MUTATED        3      1      0      0
  LCN9 WILD-TYPE    175    182    101     20
D1815V3, multiclass
        clus
vv       LCN9 MUTATED LCN9 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCN9 MUTATED        1      1      1
  LCN9 WILD-TYPE     86     79     99
D1815V4, multiclass
        clus
vv       LCN9 MUTATED LCN9 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCN9 MUTATED        0      1      1
  LCN9 WILD-TYPE     89    159    137
D1815V5, multiclass
[1] "Remove cluster labels:" "LCN9 MUTATED"          
clus
  LCN9 MUTATED LCN9 WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AH-6644     TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AY-6197     TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-CA-5254 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G5-6641 
"LCN9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LCN9 MUTATED        1      1      0
  LCN9 WILD-TYPE    181    132     72
D1815V6, multiclass
[1] "Remove cluster labels:" "LCN9 MUTATED"          
clus
  LCN9 MUTATED LCN9 WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AH-6644     TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AY-6197     TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-CA-5254 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G5-6641 
"LCN9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCN9 MUTATED        1      1      1      1
  LCN9 WILD-TYPE    111     95     91    185
D1815V7, multiclass
        clus
vv       LCN9 MUTATED LCN9 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LCN9 MUTATED        1      0      0      1      1      1      0
  LCN9 WILD-TYPE     59     50     49     39     62    124     99
D1815V8, multiclass
        clus
vv       LCN9 MUTATED LCN9 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCN9 MUTATED        1      1      1      1
  LCN9 WILD-TYPE    129     77     67    195
D1815V9, multiclass
        clus
vv       LCN9 MUTATED LCN9 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LCN9 MUTATED        1      1      0      1      0      0      1      0      0
  LCN9 WILD-TYPE     39     61     28     79     69     48     42     28     74
D1815V10, multiclass
        clus
vv       LCN9 MUTATED LCN9 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCN9 MUTATED        0      1      0      0
  LCN9 WILD-TYPE     33     30     27     19
D1815V11, multiclass
[1] "Remove cluster labels:" "LCN9 MUTATED"          
clus
  LCN9 MUTATED LCN9 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6536 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G5-6641 
"LCN9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCN9 MUTATED        1      0      0      0
  LCN9 WILD-TYPE     53     10     24     22
D1815V12, multiclass
[1] "Remove cluster labels:" "LCN9 MUTATED"          
clus
  LCN9 MUTATED LCN9 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6536 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" "LCN9 WILD-TYPE" 
    TCGA-G5-6641 
"LCN9 WILD-TYPE" 

Clustering(1816) Variable = LAMB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMB4 MUTATED        5      0      1      6
  LAMB4 WILD-TYPE     41     58     63     37
D1816V1, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMB4 MUTATED        7      2      3
  LAMB4 WILD-TYPE     44     81     74
D1816V2, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMB4 MUTATED       17      5      6      1
  LAMB4 WILD-TYPE    161    178     95     19
D1816V3, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             5             178
  CLUS_3             6              95
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMB4 MUTATED        9      2      7
  LAMB4 WILD-TYPE     78     78     93
D1816V4, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             2              78
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMB4 MUTATED        6      6     14
  LAMB4 WILD-TYPE     83    154    124
D1816V5, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             6              83
  CLUS_2             6             154
  CLUS_3            14             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LAMB4 MUTATED       14      6      6
  LAMB4 WILD-TYPE    168    127     66
D1816V6, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             6             127
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMB4 MUTATED        6      9      5     10
  LAMB4 WILD-TYPE    106     87     87    176
D1816V7, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             9              87
  CLUS_3             5              87
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LAMB4 MUTATED        4      4      3      2      5      2     10
  LAMB4 WILD-TYPE     56     46     46     38     58    123     89
D1816V8, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             5              58
  CLUS_6             2             123
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMB4 MUTATED        8      6      3     12
  LAMB4 WILD-TYPE    122     72     65    184
D1816V9, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             6              72
  CLUS_3             3              65
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LAMB4 MUTATED        3      5      0      2      9      3      4      1
  LAMB4 WILD-TYPE     37     57     28     78     60     45     39     27
                 vv
clus              CLUS_9
  LAMB4 MUTATED        2
  LAMB4 WILD-TYPE     72
D1816V10, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             9              60
  CLUS_6             3              45
  CLUS_7             4              39
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMB4 MUTATED        2      3      1      2
  LAMB4 WILD-TYPE     31     28     26     17
D1816V11, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAMB4 MUTATED        5      1      1      1
  LAMB4 WILD-TYPE     49      9     23     21
D1816V12, multiclass
        clus
vv       LAMB4 MUTATED LAMB4 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1817) Variable = MED24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED24 MUTATED        1      1      1      2
  MED24 WILD-TYPE     45     57     63     41
D1817V1, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED24 MUTATED        1      1      3
  MED24 WILD-TYPE     50     82     74
D1817V2, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED24 MUTATED        8      2      1      0
  MED24 WILD-TYPE    170    181    100     20
D1817V3, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED24 MUTATED        1      0      4
  MED24 WILD-TYPE     86     80     96
D1817V4, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED24 MUTATED        2      5      3
  MED24 WILD-TYPE     87    155    135
D1817V5, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED24 MUTATED        6      4      0
  MED24 WILD-TYPE    176    129     72
D1817V6, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED24 MUTATED        0      2      3      6
  MED24 WILD-TYPE    112     94     89    180
D1817V7, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MED24 MUTATED        1      1      3      0      1      1      4
  MED24 WILD-TYPE     59     49     46     40     62    124     95
D1817V8, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED24 MUTATED        2      2      0      5
  MED24 WILD-TYPE    128     76     68    191
D1817V9, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MED24 MUTATED        0      2      0      1      5      1      0      0
  MED24 WILD-TYPE     40     60     28     79     64     47     43     28
                 vv
clus              CLUS_9
  MED24 MUTATED        0
  MED24 WILD-TYPE     74
D1817V10, multiclass
        clus
vv       MED24 MUTATED MED24 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED24 MUTATED        0      1      0      1
  MED24 WILD-TYPE     33     30     27     18
D1817V11, multiclass
[1] "Remove cluster labels:" "MED24 MUTATED"         
clus
  MED24 MUTATED MED24 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED24 MUTATED        1      1      0      0
  MED24 WILD-TYPE     53      9     24     22
D1817V12, multiclass
[1] "Remove cluster labels:" "MED24 MUTATED"         
clus
  MED24 MUTATED MED24 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" "MED24 WILD-TYPE" 

Clustering(1818) Variable = CUBN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED        9      3      3      7
  CUBN WILD-TYPE     37     55     61     36
D1818V1, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            9             37
  CLUS_2            3             55
  CLUS_3            3             61
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUBN MUTATED       10      6      6
  CUBN WILD-TYPE     41     77     71
D1818V2, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           10             41
  CLUS_2            6             77
  CLUS_3            6             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED       39     12      4      2
  CUBN WILD-TYPE    139    171     97     18
D1818V3, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           39            139
  CLUS_2           12            171
  CLUS_3            4             97
  CLUS_4            2             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUBN MUTATED        8      7     19
  CUBN WILD-TYPE     79     73     81
D1818V4, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            8             79
  CLUS_2            7             73
  CLUS_3           19             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUBN MUTATED       11     19     18
  CUBN WILD-TYPE     78    141    120
D1818V5, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           11             78
  CLUS_2           19            141
  CLUS_3           18            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUBN MUTATED       23     16      9
  CUBN WILD-TYPE    159    117     63
D1818V6, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           23            159
  CLUS_2           16            117
  CLUS_3            9             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED        7     12     17     21
  CUBN WILD-TYPE    105     84     75    165
D1818V7, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            7            105
  CLUS_2           12             84
  CLUS_3           17             75
  CLUS_4           21            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUBN MUTATED        5      5     16      3      6      6     16
  CUBN WILD-TYPE     55     45     33     37     57    119     83
D1818V8, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            5             55
  CLUS_2            5             45
  CLUS_3           16             33
  CLUS_4            3             37
  CLUS_5            6             57
  CLUS_6            6            119
  CLUS_7           16             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED       18     11      2     24
  CUBN WILD-TYPE    112     67     66    172
D1818V9, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           18            112
  CLUS_2           11             67
  CLUS_3            2             66
  CLUS_4           24            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CUBN MUTATED        6     11      4      2     18      3      4      4      3
  CUBN WILD-TYPE     34     51     24     78     51     45     39     24     71
D1818V10, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            6             34
  CLUS_2           11             51
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5           18             51
  CLUS_6            3             45
  CLUS_7            4             39
  CLUS_8            4             24
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED        7      1      0      7
  CUBN WILD-TYPE     26     30     27     12
D1818V11, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            7             26
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            7             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED       11      0      3      1
  CUBN WILD-TYPE     43     10     21     21
D1818V12, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           11             43
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1819) Variable = ACVR1C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1C MUTATED        1      0      1      1
  ACVR1C WILD-TYPE     45     58     63     42
D1819V1, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1C MUTATED        1      0      2
  ACVR1C WILD-TYPE     50     83     75
D1819V2, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1C MUTATED        4      3      4      0
  ACVR1C WILD-TYPE    174    180     97     20
D1819V3, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              4              174
  CLUS_2              3              180
  CLUS_3              4               97
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1C MUTATED        3      2      3
  ACVR1C WILD-TYPE     84     78     97
D1819V4, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1C MUTATED        0      1      7
  ACVR1C WILD-TYPE     89    159    131
D1819V5, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1C MUTATED        6      2      0
  ACVR1C WILD-TYPE    176    131     72
D1819V6, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1C MUTATED        2      3      3      3
  ACVR1C WILD-TYPE    110     93     89    183
D1819V7, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACVR1C MUTATED        2      1      3      0      2      2      1
  ACVR1C WILD-TYPE     58     49     46     40     61    123     98
D1819V8, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1C MUTATED        6      0      0      5
  ACVR1C WILD-TYPE    124     78     68    191
D1819V9, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACVR1C MUTATED        1      0      1      2      4      0      1      0
  ACVR1C WILD-TYPE     39     62     27     78     65     48     42     28
                  vv
clus               CLUS_9
  ACVR1C MUTATED        2
  ACVR1C WILD-TYPE     72
D1819V10, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1C MUTATED        2      0      0      1
  ACVR1C WILD-TYPE     31     31     27     18
D1819V11, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1C MUTATED        2      0      1      0
  ACVR1C WILD-TYPE     52     10     23     22
D1819V12, multiclass
        clus
vv       ACVR1C MUTATED ACVR1C WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1820) Variable = MKLN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKLN1 MUTATED        2      1      0      2
  MKLN1 WILD-TYPE     44     57     64     41
D1820V1, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKLN1 MUTATED        3      1      1
  MKLN1 WILD-TYPE     48     82     76
D1820V2, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKLN1 MUTATED        7      4      0      0
  MKLN1 WILD-TYPE    171    179    101     20
D1820V3, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKLN1 MUTATED        4      1      1
  MKLN1 WILD-TYPE     83     79     99
D1820V4, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKLN1 MUTATED        2      4      4
  MKLN1 WILD-TYPE     87    156    134
D1820V5, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MKLN1 MUTATED        2      5      3
  MKLN1 WILD-TYPE    180    128     69
D1820V6, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKLN1 MUTATED        3      2      2      4
  MKLN1 WILD-TYPE    109     94     90    182
D1820V7, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MKLN1 MUTATED        2      1      1      0      3      1      3
  MKLN1 WILD-TYPE     58     49     48     40     60    124     96
D1820V8, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKLN1 MUTATED        1      2      2      6
  MKLN1 WILD-TYPE    129     76     66    190
D1820V9, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MKLN1 MUTATED        0      2      0      1      5      0      1      0
  MKLN1 WILD-TYPE     40     60     28     79     64     48     42     28
                 vv
clus              CLUS_9
  MKLN1 MUTATED        2
  MKLN1 WILD-TYPE     72
D1820V10, multiclass
        clus
vv       MKLN1 MUTATED MKLN1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKLN1 MUTATED        0      1      1      0
  MKLN1 WILD-TYPE     33     30     26     19
D1820V11, multiclass
[1] "Remove cluster labels:" "MKLN1 MUTATED"         
clus
  MKLN1 MUTATED MKLN1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8      TCGA-EI-6506 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKLN1 MUTATED        1      0      1      0
  MKLN1 WILD-TYPE     53     10     23     22
D1820V12, multiclass
[1] "Remove cluster labels:" "MKLN1 MUTATED"         
clus
  MKLN1 MUTATED MKLN1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1H8      TCGA-EI-6506 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" "MKLN1 WILD-TYPE" 

Clustering(1821) Variable = IFNA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA2 MUTATED        2      0      0      2
  IFNA2 WILD-TYPE     44     58     64     41
D1821V1, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA2 MUTATED        3      0      1
  IFNA2 WILD-TYPE     48     83     76
D1821V2, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA2 MUTATED        9      1      0      0
  IFNA2 WILD-TYPE    169    182    101     20
D1821V3, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA2 MUTATED        3      1      2
  IFNA2 WILD-TYPE     84     79     98
D1821V4, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA2 MUTATED        0      4      5
  IFNA2 WILD-TYPE     89    156    133
D1821V5, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA2 MUTATED        3      5      1
  IFNA2 WILD-TYPE    179    128     71
D1821V6, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA2 MUTATED        2      3      1      4
  IFNA2 WILD-TYPE    110     93     91    182
D1821V7, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFNA2 MUTATED        3      1      3      0      0      0      3
  IFNA2 WILD-TYPE     57     49     46     40     63    125     96
D1821V8, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA2 MUTATED        4      2      0      3
  IFNA2 WILD-TYPE    126     76     68    193
D1821V9, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFNA2 MUTATED        1      2      0      0      3      1      1      1
  IFNA2 WILD-TYPE     39     60     28     80     66     47     42     27
                 vv
clus              CLUS_9
  IFNA2 MUTATED        0
  IFNA2 WILD-TYPE     74
D1821V10, multiclass
        clus
vv       IFNA2 MUTATED IFNA2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA2 MUTATED        0      0      0      0
  IFNA2 WILD-TYPE     33     31     27     19
D1821V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA2 MUTATED        0      0      0      0
  IFNA2 WILD-TYPE     54     10     24     22
D1821V12, multiclass

Clustering(1822) Variable = MPHOSPH9 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH9 MUTATED        2      0      1      1
  MPHOSPH9 WILD-TYPE     44     58     63     42
D1822V1, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MPHOSPH9 MUTATED        0      3      1
  MPHOSPH9 WILD-TYPE     51     80     76
D1822V2, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                0                 51
  CLUS_2                3                 80
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH9 MUTATED        7      2      1      0
  MPHOSPH9 WILD-TYPE    171    181    100     20
D1822V3, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                7                171
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MPHOSPH9 MUTATED        2      1      3
  MPHOSPH9 WILD-TYPE     85     79     97
D1822V4, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MPHOSPH9 MUTATED        2      4      2
  MPHOSPH9 WILD-TYPE     87    156    136
D1822V5, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                4                156
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MPHOSPH9 MUTATED        3      4      1
  MPHOSPH9 WILD-TYPE    179    129     71
D1822V6, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH9 MUTATED        1      2      3      4
  MPHOSPH9 WILD-TYPE    111     94     89    182
D1822V7, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                 94
  CLUS_3                3                 89
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MPHOSPH9 MUTATED        2      0      4      0      0      3      1
  MPHOSPH9 WILD-TYPE     58     50     45     40     63    122     98
D1822V8, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                3                122
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH9 MUTATED        2      2      1      5
  MPHOSPH9 WILD-TYPE    128     76     67    191
D1822V9, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MPHOSPH9 MUTATED        0      1      0      2      4      0      1      1
  MPHOSPH9 WILD-TYPE     40     61     28     78     65     48     42     27
                    vv
clus                 CLUS_9
  MPHOSPH9 MUTATED        1
  MPHOSPH9 WILD-TYPE     73
D1822V10, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                1                 27
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH9 MUTATED        3      0      0      1
  MPHOSPH9 WILD-TYPE     30     31     27     18
D1822V11, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPHOSPH9 MUTATED        2      0      1      1
  MPHOSPH9 WILD-TYPE     52     10     23     21
D1822V12, multiclass
        clus
vv       MPHOSPH9 MUTATED MPHOSPH9 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1823) Variable = TM7SF4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        1      0      0      1
  TM7SF4 WILD-TYPE     45     58     64     42
D1823V1, multiclass
[1] "Remove cluster labels:" "TM7SF4 MUTATED"        
clus
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AY-4071 
"TM7SF4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM7SF4 MUTATED        1      1      0
  TM7SF4 WILD-TYPE     50     82     77
D1823V2, multiclass
[1] "Remove cluster labels:" "TM7SF4 MUTATED"        
clus
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AY-4071 
"TM7SF4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        6      0      3      0
  TM7SF4 WILD-TYPE    172    183     98     20
D1823V3, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              0              183
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM7SF4 MUTATED        2      2      4
  TM7SF4 WILD-TYPE     85     78     96
D1823V4, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM7SF4 MUTATED        0      4      5
  TM7SF4 WILD-TYPE     89    156    133
D1823V5, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM7SF4 MUTATED        4      4      1
  TM7SF4 WILD-TYPE    178    129     71
D1823V6, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        2      1      3      3
  TM7SF4 WILD-TYPE    110     95     89    183
D1823V7, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TM7SF4 MUTATED        1      0      2      1      1      1      3
  TM7SF4 WILD-TYPE     59     50     47     39     62    124     96
D1823V8, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        3      2      0      4
  TM7SF4 WILD-TYPE    127     76     68    192
D1823V9, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TM7SF4 MUTATED        1      3      1      1      1      0      1      0
  TM7SF4 WILD-TYPE     39     59     27     79     68     48     42     28
                  vv
clus               CLUS_9
  TM7SF4 MUTATED        1
  TM7SF4 WILD-TYPE     73
D1823V10, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        0      1      0      1
  TM7SF4 WILD-TYPE     33     30     27     18
D1823V11, multiclass
[1] "Remove cluster labels:" "TM7SF4 MUTATED"        
clus
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6465 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        2      0      0      0
  TM7SF4 WILD-TYPE     52     10     24     22
D1823V12, multiclass
[1] "Remove cluster labels:" "TM7SF4 MUTATED"        
clus
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6465 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 

Clustering(1824) Variable = ZNF585B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585B MUTATED        1      0      0      2
  ZNF585B WILD-TYPE     45     58     64     41
D1824V1, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585B MUTATED        1      1      1
  ZNF585B WILD-TYPE     50     82     76
D1824V2, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585B MUTATED        6      1      1      0
  ZNF585B WILD-TYPE    172    182    100     20
D1824V3, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               6               172
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585B MUTATED        1      1      3
  ZNF585B WILD-TYPE     86     79     97
D1824V4, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585B MUTATED        2      5      0
  ZNF585B WILD-TYPE     87    155    138
D1824V5, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               5               155
  CLUS_3               0               138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZNF585B MUTATED        1      4      2
  ZNF585B WILD-TYPE    181    129     70
D1824V6, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               1               181
  CLUS_2               4               129
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585B MUTATED        1      1      3      3
  ZNF585B WILD-TYPE    111     95     89    183
D1824V7, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               3                89
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF585B MUTATED        1      1      2      0      2      0      2
  ZNF585B WILD-TYPE     59     49     47     40     61    125     97
D1824V8, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585B MUTATED        3      2      0      3
  ZNF585B WILD-TYPE    127     76     68    193
D1824V9, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF585B MUTATED        2      1      1      0      3      1      0      0
  ZNF585B WILD-TYPE     38     61     27     80     66     47     43     28
                   vv
clus                CLUS_9
  ZNF585B MUTATED        0
  ZNF585B WILD-TYPE     74
D1824V10, multiclass
        clus
vv       ZNF585B MUTATED ZNF585B WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585B MUTATED        0      1      0      1
  ZNF585B WILD-TYPE     33     30     27     18
D1824V11, multiclass
[1] "Remove cluster labels:" "ZNF585B MUTATED"       
clus
  ZNF585B MUTATED ZNF585B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF585B MUTATED        1      0      0      1
  ZNF585B WILD-TYPE     53     10     24     21
D1824V12, multiclass
[1] "Remove cluster labels:" "ZNF585B MUTATED"       
clus
  ZNF585B MUTATED ZNF585B WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" "ZNF585B WILD-TYPE" 

Clustering(1825) Variable = ATP1A4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A4 MUTATED        3      0      0      3
  ATP1A4 WILD-TYPE     43     58     64     40
D1825V1, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A4 MUTATED        3      2      1
  ATP1A4 WILD-TYPE     48     81     76
D1825V2, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A4 MUTATED       15      2      2      0
  ATP1A4 WILD-TYPE    163    181     99     20
D1825V3, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A4 MUTATED        3      4      6
  ATP1A4 WILD-TYPE     84     76     94
D1825V4, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A4 MUTATED        1      6      7
  ATP1A4 WILD-TYPE     88    154    131
D1825V5, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP1A4 MUTATED        6      7      1
  ATP1A4 WILD-TYPE    176    126     71
D1825V6, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A4 MUTATED        4      5      4      6
  ATP1A4 WILD-TYPE    108     91     88    180
D1825V7, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP1A4 MUTATED        2      3      6      0      3      1      4
  ATP1A4 WILD-TYPE     58     47     43     40     60    124     95
D1825V8, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A4 MUTATED        6      2      3      8
  ATP1A4 WILD-TYPE    124     76     65    188
D1825V9, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              3               65
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP1A4 MUTATED        0      3      4      2      7      0      2      0
  ATP1A4 WILD-TYPE     40     59     24     78     62     48     41     28
                  vv
clus               CLUS_9
  ATP1A4 MUTATED        1
  ATP1A4 WILD-TYPE     73
D1825V10, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              4               24
  CLUS_4              2               78
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A4 MUTATED        1      0      1      2
  ATP1A4 WILD-TYPE     32     31     26     17
D1825V11, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP1A4 MUTATED        0      1      3      0
  ATP1A4 WILD-TYPE     54      9     21     22
D1825V12, multiclass
        clus
vv       ATP1A4 MUTATED ATP1A4 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              1                9
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1826) Variable = GUCY2F MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        3      1      0      4
  GUCY2F WILD-TYPE     43     57     64     39
D1826V1, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2F MUTATED        4      2      2
  GUCY2F WILD-TYPE     47     81     75
D1826V2, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED       14      6      3      0
  GUCY2F WILD-TYPE    164    177     98     20
D1826V3, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1             14              164
  CLUS_2              6              177
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2F MUTATED        2      4      8
  GUCY2F WILD-TYPE     85     76     92
D1826V4, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              2               85
  CLUS_2              4               76
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2F MUTATED        4      7      5
  GUCY2F WILD-TYPE     85    153    133
D1826V5, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              4               85
  CLUS_2              7              153
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GUCY2F MUTATED        6      6      4
  GUCY2F WILD-TYPE    176    127     68
D1826V6, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        6      5      3      9
  GUCY2F WILD-TYPE    106     91     89    177
D1826V7, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              6              106
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GUCY2F MUTATED        5      3      5      2      0      2      6
  GUCY2F WILD-TYPE     55     47     44     38     63    123     93
D1826V8, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              5               55
  CLUS_2              3               47
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        6      1      3     13
  GUCY2F WILD-TYPE    124     77     65    183
D1826V9, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              6              124
  CLUS_2              1               77
  CLUS_3              3               65
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GUCY2F MUTATED        2      1      3      2      8      1      3      2
  GUCY2F WILD-TYPE     38     61     25     78     61     47     40     26
                  vv
clus               CLUS_9
  GUCY2F MUTATED        1
  GUCY2F WILD-TYPE     73
D1826V10, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              3               25
  CLUS_4              2               78
  CLUS_5              8               61
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        3      0      2      1
  GUCY2F WILD-TYPE     30     31     25     18
D1826V11, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GUCY2F MUTATED        2      0      1      3
  GUCY2F WILD-TYPE     52     10     23     19
D1826V12, multiclass
        clus
vv       GUCY2F MUTATED GUCY2F WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              3               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1827) Variable = DRD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD3 MUTATED        1      0      0      2
  DRD3 WILD-TYPE     45     58     64     41
D1827V1, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DRD3 MUTATED        2      1      0
  DRD3 WILD-TYPE     49     82     77
D1827V2, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD3 MUTATED        4      1      1      0
  DRD3 WILD-TYPE    174    182    100     20
D1827V3, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DRD3 MUTATED        2      1      0
  DRD3 WILD-TYPE     85     79    100
D1827V4, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DRD3 MUTATED        1      4      1
  DRD3 WILD-TYPE     88    156    137
D1827V5, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DRD3 MUTATED        2      3      1
  DRD3 WILD-TYPE    180    130     71
D1827V6, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD3 MUTATED        1      1      1      3
  DRD3 WILD-TYPE    111     95     91    183
D1827V7, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DRD3 MUTATED        1      1      0      0      1      0      3
  DRD3 WILD-TYPE     59     49     49     40     62    125     96
D1827V8, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD3 MUTATED        2      0      0      4
  DRD3 WILD-TYPE    128     78     68    192
D1827V9, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DRD3 MUTATED        0      0      1      1      2      1      0      0      1
  DRD3 WILD-TYPE     40     62     27     79     67     47     43     28     73
D1827V10, multiclass
        clus
vv       DRD3 MUTATED DRD3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD3 MUTATED        1      0      0      0
  DRD3 WILD-TYPE     32     31     27     19
D1827V11, multiclass
[1] "Remove cluster labels:" "DRD3 MUTATED"          
clus
  DRD3 MUTATED DRD3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-G5-6641 
"DRD3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DRD3 MUTATED        0      0      0      1
  DRD3 WILD-TYPE     54     10     24     21
D1827V12, multiclass
[1] "Remove cluster labels:" "DRD3 MUTATED"          
clus
  DRD3 MUTATED DRD3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" "DRD3 WILD-TYPE" 
    TCGA-G5-6641 
"DRD3 WILD-TYPE" 

Clustering(1828) Variable = SMG7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        1      1      3      1
  SMG7 WILD-TYPE     45     57     61     42
D1828V1, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            3             61
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        0      3      3
  SMG7 WILD-TYPE     51     80     74
D1828V2, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            3             80
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        5      4      2      1
  SMG7 WILD-TYPE    173    179     99     19
D1828V3, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        1      2      3
  SMG7 WILD-TYPE     86     78     97
D1828V4, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        0      6      1
  SMG7 WILD-TYPE     89    154    137
D1828V5, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        1      3      3
  SMG7 WILD-TYPE    181    130     69
D1828V6, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        4      3      0      5
  SMG7 WILD-TYPE    108     93     92    181
D1828V7, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMG7 MUTATED        3      1      1      1      1      5      0
  SMG7 WILD-TYPE     57     49     48     39     62    120     99
D1828V8, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            5            120
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        2      2      2      6
  SMG7 WILD-TYPE    128     76     66    190
D1828V9, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMG7 MUTATED        1      0      0      1      3      3      2      0      2
  SMG7 WILD-TYPE     39     62     28     79     66     45     41     28     72
D1828V10, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            3             45
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        0      1      1      1
  SMG7 WILD-TYPE     33     30     26     18
D1828V11, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        1      0      1      1
  SMG7 WILD-TYPE     53     10     23     21
D1828V12, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1829) Variable = OR51T1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51T1 MUTATED        2      0      0      1
  OR51T1 WILD-TYPE     44     58     64     42
D1829V1, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51T1 MUTATED        1      1      1
  OR51T1 WILD-TYPE     50     82     76
D1829V2, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51T1 MUTATED        6      4      1      0
  OR51T1 WILD-TYPE    172    179    100     20
D1829V3, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51T1 MUTATED        3      2      5
  OR51T1 WILD-TYPE     84     78     95
D1829V4, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51T1 MUTATED        1      3      7
  OR51T1 WILD-TYPE     88    157    131
D1829V5, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51T1 MUTATED        4      6      1
  OR51T1 WILD-TYPE    178    127     71
D1829V6, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              6              127
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51T1 MUTATED        4      3      3      3
  OR51T1 WILD-TYPE    108     93     89    183
D1829V7, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR51T1 MUTATED        3      2      4      1      0      1      2
  OR51T1 WILD-TYPE     57     48     45     39     63    124     97
D1829V8, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51T1 MUTATED        6      2      1      4
  OR51T1 WILD-TYPE    124     76     67    192
D1829V9, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR51T1 MUTATED        1      2      2      3      3      0      1      0
  OR51T1 WILD-TYPE     39     60     26     77     66     48     42     28
                  vv
clus               CLUS_9
  OR51T1 MUTATED        1
  OR51T1 WILD-TYPE     73
D1829V10, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51T1 MUTATED        1      1      1      1
  OR51T1 WILD-TYPE     32     30     26     18
D1829V11, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51T1 MUTATED        2      0      1      1
  OR51T1 WILD-TYPE     52     10     23     21
D1829V12, multiclass
        clus
vv       OR51T1 MUTATED OR51T1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1830) Variable = NPPB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPPB MUTATED        0      0      1      0
  NPPB WILD-TYPE     46     58     63     43
D1830V1, multiclass
[1] "Remove cluster labels:" "NPPB MUTATED"          
clus
  NPPB MUTATED NPPB WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3898 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPPB MUTATED        0      1      0
  NPPB WILD-TYPE     51     82     77
D1830V2, multiclass
[1] "Remove cluster labels:" "NPPB MUTATED"          
clus
  NPPB MUTATED NPPB WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3898 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" "NPPB WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"NPPB WILD-TYPE" "NPPB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPPB MUTATED        3      0      2      0
  NPPB WILD-TYPE    175    183     99     20
D1830V3, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPPB MUTATED        0      1      3
  NPPB WILD-TYPE     87     79     97
D1830V4, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            0             87
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPPB MUTATED        0      3      1
  NPPB WILD-TYPE     89    157    137
D1830V5, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPPB MUTATED        1      2      1
  NPPB WILD-TYPE    181    131     71
D1830V6, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPPB MUTATED        1      2      1      1
  NPPB WILD-TYPE    111     94     91    185
D1830V7, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NPPB MUTATED        1      1      2      0      0      1      0
  NPPB WILD-TYPE     59     49     47     40     63    124     99
D1830V8, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPPB MUTATED        3      0      1      1
  NPPB WILD-TYPE    127     78     67    195
D1830V9, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NPPB MUTATED        1      0      0      1      2      0      0      0      1
  NPPB WILD-TYPE     39     62     28     79     67     48     43     28     73
D1830V10, multiclass
        clus
vv       NPPB MUTATED NPPB WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPPB MUTATED        0      0      0      0
  NPPB WILD-TYPE     33     31     27     19
D1830V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPPB MUTATED        0      0      0      0
  NPPB WILD-TYPE     54     10     24     22
D1830V12, multiclass

Clustering(1831) Variable = ZNF643 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF643 MUTATED        1      0      0      3
  ZNF643 WILD-TYPE     45     58     64     40
D1831V1, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF643 MUTATED        1      2      1
  ZNF643 WILD-TYPE     50     81     76
D1831V2, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF643 MUTATED        6      3      1      0
  ZNF643 WILD-TYPE    172    180    100     20
D1831V3, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF643 MUTATED        2      2      2
  ZNF643 WILD-TYPE     85     78     98
D1831V4, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF643 MUTATED        0      4      4
  ZNF643 WILD-TYPE     89    156    134
D1831V5, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF643 MUTATED        2      5      1
  ZNF643 WILD-TYPE    180    128     71
D1831V6, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF643 MUTATED        2      3      1      4
  ZNF643 WILD-TYPE    110     93     91    182
D1831V7, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF643 MUTATED        1      3      1      2      0      1      2
  ZNF643 WILD-TYPE     59     47     48     38     63    124     97
D1831V8, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF643 MUTATED        3      1      1      4
  ZNF643 WILD-TYPE    127     77     67    192
D1831V9, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF643 MUTATED        3      1      1      1      1      0      1      0
  ZNF643 WILD-TYPE     37     61     27     79     68     48     42     28
                  vv
clus               CLUS_9
  ZNF643 MUTATED        1
  ZNF643 WILD-TYPE     73
D1831V10, multiclass
        clus
vv       ZNF643 MUTATED ZNF643 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF643 MUTATED        0      1      0      0
  ZNF643 WILD-TYPE     33     30     27     19
D1831V11, multiclass
[1] "Remove cluster labels:" "ZNF643 MUTATED"        
clus
  ZNF643 MUTATED ZNF643 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF643 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF643 MUTATED        1      0      0      0
  ZNF643 WILD-TYPE     53     10     24     22
D1831V12, multiclass
[1] "Remove cluster labels:" "ZNF643 MUTATED"        
clus
  ZNF643 MUTATED ZNF643 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" "ZNF643 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF643 WILD-TYPE" 

Clustering(1832) Variable = DUSP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP7 MUTATED        0      0      2      0
  DUSP7 WILD-TYPE     46     58     62     43
D1832V1, multiclass
[1] "Remove cluster labels:" "DUSP7 MUTATED"         
clus
  DUSP7 MUTATED DUSP7 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3530      TCGA-AA-3531 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AY-4071 
"DUSP7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP7 MUTATED        0      0      2
  DUSP7 WILD-TYPE     51     83     75
D1832V2, multiclass
[1] "Remove cluster labels:" "DUSP7 MUTATED"         
clus
  DUSP7 MUTATED DUSP7 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3530      TCGA-AA-3531 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" "DUSP7 WILD-TYPE" 
     TCGA-AY-4071 
"DUSP7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP7 MUTATED        3      3      2      0
  DUSP7 WILD-TYPE    175    180     99     20
D1832V3, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP7 MUTATED        1      1      4
  DUSP7 WILD-TYPE     86     79     96
D1832V4, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP7 MUTATED        2      1      3
  DUSP7 WILD-TYPE     87    159    135
D1832V5, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP7 MUTATED        3      2      1
  DUSP7 WILD-TYPE    179    131     71
D1832V6, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP7 MUTATED        1      5      0      2
  DUSP7 WILD-TYPE    111     91     92    184
D1832V7, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DUSP7 MUTATED        0      4      1      1      0      2      0
  DUSP7 WILD-TYPE     60     46     48     39     63    123     99
D1832V8, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             4              46
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP7 MUTATED        3      1      1      3
  DUSP7 WILD-TYPE    127     77     67    193
D1832V9, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DUSP7 MUTATED        1      1      1      3      1      0      1      0
  DUSP7 WILD-TYPE     39     61     27     77     68     48     42     28
                 vv
clus              CLUS_9
  DUSP7 MUTATED        0
  DUSP7 WILD-TYPE     74
D1832V10, multiclass
        clus
vv       DUSP7 MUTATED DUSP7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP7 MUTATED        0      0      0      0
  DUSP7 WILD-TYPE     33     31     27     19
D1832V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP7 MUTATED        0      0      0      0
  DUSP7 WILD-TYPE     54     10     24     22
D1832V12, multiclass

Clustering(1833) Variable = ZDHHC21 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC21 MUTATED        0      1      1      1
  ZDHHC21 WILD-TYPE     46     57     63     42
D1833V1, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZDHHC21 MUTATED        0      1      2
  ZDHHC21 WILD-TYPE     51     82     75
D1833V2, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC21 MUTATED        3      1      1      0
  ZDHHC21 WILD-TYPE    175    182    100     20
D1833V3, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               3               175
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZDHHC21 MUTATED        1      0      1
  ZDHHC21 WILD-TYPE     86     80     99
D1833V4, multiclass
[1] "Remove cluster labels:" "ZDHHC21 MUTATED"       
clus
  ZDHHC21 MUTATED ZDHHC21 WILD-TYPE 
                2               265 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-2693 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-A01W 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02N 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779        TCGA-AU-6004 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4681 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407        TCGA-AZ-6598 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6747 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917        TCGA-CL-5918 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-5538 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541        TCGA-D5-6529 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6535 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538        TCGA-D5-6539 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898        TCGA-D5-6920 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924        TCGA-D5-6926 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929        TCGA-D5-6930 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000        TCGA-DC-5337 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28C 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G        TCGA-DM-A28H 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G5-6641 
"ZDHHC21 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZDHHC21 MUTATED        0      3      1
  ZDHHC21 WILD-TYPE     89    157    137
D1833V5, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZDHHC21 MUTATED        1      3      0
  ZDHHC21 WILD-TYPE    181    130     72
D1833V6, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC21 MUTATED        0      0      2      3
  ZDHHC21 WILD-TYPE    112     96     90    183
D1833V7, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               0                96
  CLUS_3               2                90
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZDHHC21 MUTATED        1      0      2      0      0      2      0
  ZDHHC21 WILD-TYPE     59     50     47     40     63    123     99
D1833V8, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               2               123
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC21 MUTATED        0      1      1      3
  ZDHHC21 WILD-TYPE    130     77     67    193
D1833V9, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               0               130
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZDHHC21 MUTATED        0      0      0      2      2      0      0      0
  ZDHHC21 WILD-TYPE     40     62     28     78     67     48     43     28
                   vv
clus                CLUS_9
  ZDHHC21 MUTATED        1
  ZDHHC21 WILD-TYPE     73
D1833V10, multiclass
        clus
vv       ZDHHC21 MUTATED ZDHHC21 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC21 MUTATED        1      0      0      0
  ZDHHC21 WILD-TYPE     32     31     27     19
D1833V11, multiclass
[1] "Remove cluster labels:" "ZDHHC21 MUTATED"       
clus
  ZDHHC21 MUTATED ZDHHC21 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G5-6641 
"ZDHHC21 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC21 MUTATED        1      0      0      0
  ZDHHC21 WILD-TYPE     53     10     24     22
D1833V12, multiclass
[1] "Remove cluster labels:" "ZDHHC21 MUTATED"       
clus
  ZDHHC21 MUTATED ZDHHC21 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6965        TCGA-AF-2687 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" "ZDHHC21 WILD-TYPE" 
       TCGA-G5-6641 
"ZDHHC21 WILD-TYPE" 

Clustering(1834) Variable = SOX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX6 MUTATED        2      0      0      3
  SOX6 WILD-TYPE     44     58     64     40
D1834V1, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX6 MUTATED        1      2      2
  SOX6 WILD-TYPE     50     81     75
D1834V2, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX6 MUTATED       13      2      0      1
  SOX6 WILD-TYPE    165    181    101     19
D1834V3, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX6 MUTATED        4      2      4
  SOX6 WILD-TYPE     83     78     96
D1834V4, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX6 MUTATED        2      3      6
  SOX6 WILD-TYPE     87    157    132
D1834V5, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX6 MUTATED        8      3      0
  SOX6 WILD-TYPE    174    130     72
D1834V6, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX6 MUTATED        2      3      6      5
  SOX6 WILD-TYPE    110     93     86    181
D1834V7, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SOX6 MUTATED        3      2      6      0      1      1      3
  SOX6 WILD-TYPE     57     48     43     40     62    124     96
D1834V8, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX6 MUTATED        7      3      0      6
  SOX6 WILD-TYPE    123     75     68    190
D1834V9, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SOX6 MUTATED        2      4      2      1      2      2      0      2      1
  SOX6 WILD-TYPE     38     58     26     79     67     46     43     26     73
D1834V10, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX6 MUTATED        2      0      0      2
  SOX6 WILD-TYPE     31     31     27     17
D1834V11, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX6 MUTATED        3      0      0      1
  SOX6 WILD-TYPE     51     10     24     21
D1834V12, multiclass
        clus
vv       SOX6 MUTATED SOX6 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1835) Variable = APBA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBA1 MUTATED        2      1      1      3
  APBA1 WILD-TYPE     44     57     63     40
D1835V1, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APBA1 MUTATED        3      2      2
  APBA1 WILD-TYPE     48     81     75
D1835V2, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBA1 MUTATED       11      2      1      0
  APBA1 WILD-TYPE    167    181    100     20
D1835V3, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APBA1 MUTATED        1      1      6
  APBA1 WILD-TYPE     86     79     94
D1835V4, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APBA1 MUTATED        4      3      3
  APBA1 WILD-TYPE     85    157    135
D1835V5, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  APBA1 MUTATED        5      1      4
  APBA1 WILD-TYPE    177    132     68
D1835V6, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBA1 MUTATED        1      5      1      7
  APBA1 WILD-TYPE    111     91     91    179
D1835V7, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             1              91
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  APBA1 MUTATED        1      1      4      1      1      3      3
  APBA1 WILD-TYPE     59     49     45     39     62    122     96
D1835V8, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBA1 MUTATED        3      0      1     10
  APBA1 WILD-TYPE    127     78     67    186
D1835V9, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  APBA1 MUTATED        1      2      0      3      5      0      1      1
  APBA1 WILD-TYPE     39     60     28     77     64     48     42     27
                 vv
clus              CLUS_9
  APBA1 MUTATED        1
  APBA1 WILD-TYPE     73
D1835V10, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBA1 MUTATED        1      0      1      1
  APBA1 WILD-TYPE     32     31     26     18
D1835V11, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APBA1 MUTATED        0      0      1      2
  APBA1 WILD-TYPE     54     10     23     20
D1835V12, multiclass
        clus
vv       APBA1 MUTATED APBA1 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1836) Variable = RREB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        2      0      0      1
  RREB1 WILD-TYPE     44     58     64     42
D1836V1, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        2      0      1
  RREB1 WILD-TYPE     49     83     76
D1836V2, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        7      3      2      1
  RREB1 WILD-TYPE    171    180     99     19
D1836V3, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        4      3      3
  RREB1 WILD-TYPE     83     77     97
D1836V4, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        0      6      5
  RREB1 WILD-TYPE     89    154    133
D1836V5, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        5      4      2
  RREB1 WILD-TYPE    177    129     70
D1836V6, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        3      3      4      3
  RREB1 WILD-TYPE    109     93     88    183
D1836V7, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RREB1 MUTATED        2      2      5      1      1      0      2
  RREB1 WILD-TYPE     58     48     44     39     62    125     97
D1836V8, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        7      1      1      4
  RREB1 WILD-TYPE    123     77     67    192
D1836V9, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RREB1 MUTATED        1      3      1      1      4      0      2      0
  RREB1 WILD-TYPE     39     59     27     79     65     48     41     28
                 vv
clus              CLUS_9
  RREB1 MUTATED        1
  RREB1 WILD-TYPE     73
D1836V10, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        1      0      1      1
  RREB1 WILD-TYPE     32     31     26     18
D1836V11, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        2      1      0      0
  RREB1 WILD-TYPE     52      9     24     22
D1836V12, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1837) Variable = KIAA0355 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0355 MUTATED        1      0      0      0
  KIAA0355 WILD-TYPE     45     58     64     43
D1837V1, multiclass
[1] "Remove cluster labels:" "KIAA0355 MUTATED"      
clus
  KIAA0355 MUTATED KIAA0355 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3811         TCGA-AA-3812 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0355 MUTATED        1      0      0
  KIAA0355 WILD-TYPE     50     83     77
D1837V2, multiclass
[1] "Remove cluster labels:" "KIAA0355 MUTATED"      
clus
  KIAA0355 MUTATED KIAA0355 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3811         TCGA-AA-3812 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3814         TCGA-AA-3815         TCGA-AA-3818 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0355 MUTATED        4      3      0      0
  KIAA0355 WILD-TYPE    174    180    101     20
D1837V3, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                4                174
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0355 MUTATED        1      3      2
  KIAA0355 WILD-TYPE     86     77     98
D1837V4, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                3                 77
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0355 MUTATED        4      0      2
  KIAA0355 WILD-TYPE     85    160    136
D1837V5, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                4                 85
  CLUS_2                0                160
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0355 MUTATED        3      0      3
  KIAA0355 WILD-TYPE    179    133     69
D1837V6, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                0                133
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0355 MUTATED        2      3      1      1
  KIAA0355 WILD-TYPE    110     93     91    185
D1837V7, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                1                 91
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0355 MUTATED        0      2      1      1      2      0      1
  KIAA0355 WILD-TYPE     60     48     48     39     61    125     98
D1837V8, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                2                 48
  CLUS_3                1                 48
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0355 MUTATED        3      2      1      1
  KIAA0355 WILD-TYPE    127     76     67    195
D1837V9, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                1                 67
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0355 MUTATED        3      2      0      0      1      0      1      0
  KIAA0355 WILD-TYPE     37     60     28     80     68     48     42     28
                    vv
clus                 CLUS_9
  KIAA0355 MUTATED        0
  KIAA0355 WILD-TYPE     74
D1837V10, multiclass
        clus
vv       KIAA0355 MUTATED KIAA0355 WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                1                 42
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0355 MUTATED        1      1      0      0
  KIAA0355 WILD-TYPE     32     30     27     19
D1837V11, multiclass
[1] "Remove cluster labels:" "KIAA0355 MUTATED"      
clus
  KIAA0355 MUTATED KIAA0355 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-6781         TCGA-AA-3489         TCGA-AA-3511 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0355 MUTATED        1      1      0      0
  KIAA0355 WILD-TYPE     53      9     24     22
D1837V12, multiclass
[1] "Remove cluster labels:" "KIAA0355 MUTATED"      
clus
  KIAA0355 MUTATED KIAA0355 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-A6-6781         TCGA-AA-3489         TCGA-AA-3511 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" "KIAA0355 WILD-TYPE" 

Clustering(1838) Variable = PTPN13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        1      1      1      3
  PTPN13 WILD-TYPE     45     57     63     40
D1838V1, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN13 MUTATED        2      3      1
  PTPN13 WILD-TYPE     49     80     76
D1838V2, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED       19      3      3      0
  PTPN13 WILD-TYPE    159    180     98     20
D1838V3, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1             19              159
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN13 MUTATED        8      1      9
  PTPN13 WILD-TYPE     79     79     91
D1838V4, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              1               79
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN13 MUTATED        5      7     10
  PTPN13 WILD-TYPE     84    153    128
D1838V5, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              5               84
  CLUS_2              7              153
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN13 MUTATED        9      8      5
  PTPN13 WILD-TYPE    173    125     67
D1838V6, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              8              125
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        3     10      6      6
  PTPN13 WILD-TYPE    109     86     86    180
D1838V7, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              3              109
  CLUS_2             10               86
  CLUS_3              6               86
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN13 MUTATED        2      3      8      4      2      2      4
  PTPN13 WILD-TYPE     58     47     41     36     61    123     95
D1838V8, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              8               41
  CLUS_4              4               36
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        9      3      2     10
  PTPN13 WILD-TYPE    121     75     66    186
D1838V9, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPN13 MUTATED        3      3      3      1      7      2      1      1
  PTPN13 WILD-TYPE     37     59     25     79     62     46     42     27
                  vv
clus               CLUS_9
  PTPN13 MUTATED        3
  PTPN13 WILD-TYPE     71
D1838V10, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              2               46
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        1      0      2      0
  PTPN13 WILD-TYPE     32     31     25     19
D1838V11, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        0      0      3      0
  PTPN13 WILD-TYPE     54     10     21     22
D1838V12, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1839) Variable = TNKS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS2 MUTATED        3      0      0      4
  TNKS2 WILD-TYPE     43     58     64     39
D1839V1, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNKS2 MUTATED        4      2      1
  TNKS2 WILD-TYPE     47     81     76
D1839V2, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS2 MUTATED       15      4      3      0
  TNKS2 WILD-TYPE    163    179     98     20
D1839V3, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNKS2 MUTATED        8      2      5
  TNKS2 WILD-TYPE     79     78     95
D1839V4, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNKS2 MUTATED        1      9      8
  TNKS2 WILD-TYPE     88    151    130
D1839V5, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             9             151
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNKS2 MUTATED       10      7      1
  TNKS2 WILD-TYPE    172    126     71
D1839V6, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS2 MUTATED        4      5      5      8
  TNKS2 WILD-TYPE    108     91     87    178
D1839V7, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             5              91
  CLUS_3             5              87
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNKS2 MUTATED        5      2      6      0      2      3      4
  TNKS2 WILD-TYPE     55     48     43     40     61    122     95
D1839V8, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             3             122
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS2 MUTATED        6      4      2      9
  TNKS2 WILD-TYPE    124     74     66    187
D1839V9, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNKS2 MUTATED        2      4      2      3      6      1      2      1
  TNKS2 WILD-TYPE     38     58     26     77     63     47     41     27
                 vv
clus              CLUS_9
  TNKS2 MUTATED        0
  TNKS2 WILD-TYPE     74
D1839V10, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS2 MUTATED        1      0      2      1
  TNKS2 WILD-TYPE     32     31     25     18
D1839V11, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS2 MUTATED        1      0      3      0
  TNKS2 WILD-TYPE     53     10     21     22
D1839V12, multiclass
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1840) Variable = XPO4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO4 MUTATED        2      0      0      2
  XPO4 WILD-TYPE     44     58     64     41
D1840V1, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO4 MUTATED        1      2      1
  XPO4 WILD-TYPE     50     81     76
D1840V2, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO4 MUTATED       15      1      4      0
  XPO4 WILD-TYPE    163    182     97     20
D1840V3, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            1            182
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO4 MUTATED        5      1      9
  XPO4 WILD-TYPE     82     79     91
D1840V4, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO4 MUTATED        2      7      5
  XPO4 WILD-TYPE     87    153    133
D1840V5, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            7            153
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XPO4 MUTATED        8      6      0
  XPO4 WILD-TYPE    174    127     72
D1840V6, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO4 MUTATED        2      7      6      5
  XPO4 WILD-TYPE    110     89     86    181
D1840V7, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            7             89
  CLUS_3            6             86
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XPO4 MUTATED        3      3      6      1      3      1      3
  XPO4 WILD-TYPE     57     47     43     39     60    124     96
D1840V8, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            6             43
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO4 MUTATED        9      4      1      6
  XPO4 WILD-TYPE    121     74     67    190
D1840V9, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            4             74
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  XPO4 MUTATED        2      6      2      3      4      1      0      1      1
  XPO4 WILD-TYPE     38     56     26     77     65     47     43     27     73
D1840V10, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            6             56
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO4 MUTATED        1      1      0      2
  XPO4 WILD-TYPE     32     30     27     17
D1840V11, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XPO4 MUTATED        2      1      1      0
  XPO4 WILD-TYPE     52      9     23     22
D1840V12, multiclass
        clus
vv       XPO4 MUTATED XPO4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1841) Variable = AKNA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNA MUTATED        1      1      2      1
  AKNA WILD-TYPE     45     57     62     42
D1841V1, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            2             62
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKNA MUTATED        0      1      4
  AKNA WILD-TYPE     51     82     73
D1841V2, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            0             51
  CLUS_2            1             82
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNA MUTATED        8      4      0      0
  AKNA WILD-TYPE    170    179    101     20
D1841V3, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            8            170
  CLUS_2            4            179
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKNA MUTATED        4      0      3
  AKNA WILD-TYPE     83     80     97
D1841V4, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKNA MUTATED        2      3      5
  AKNA WILD-TYPE     87    157    133
D1841V5, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKNA MUTATED        6      3      1
  AKNA WILD-TYPE    176    130     71
D1841V6, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNA MUTATED        2      3      2      5
  AKNA WILD-TYPE    110     93     90    181
D1841V7, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKNA MUTATED        2      0      3      1      2      3      1
  AKNA WILD-TYPE     58     50     46     39     61    122     98
D1841V8, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            3            122
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNA MUTATED        4      2      1      4
  AKNA WILD-TYPE    126     76     67    192
D1841V9, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AKNA MUTATED        1      2      0      2      1      2      3      0      0
  AKNA WILD-TYPE     39     60     28     78     68     46     40     28     74
D1841V10, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            2             46
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNA MUTATED        0      1      1      1
  AKNA WILD-TYPE     33     30     26     18
D1841V11, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKNA MUTATED        1      0      1      1
  AKNA WILD-TYPE     53     10     23     21
D1841V12, multiclass
        clus
vv       AKNA MUTATED AKNA WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1842) Variable = TRIM36 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM36 MUTATED        3      1      0      0
  TRIM36 WILD-TYPE     43     57     64     43
D1842V1, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM36 MUTATED        2      2      0
  TRIM36 WILD-TYPE     49     81     77
D1842V2, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM36 MUTATED        7      5      3      0
  TRIM36 WILD-TYPE    171    178     98     20
D1842V3, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              5              178
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM36 MUTATED        3      1      7
  TRIM36 WILD-TYPE     84     79     93
D1842V4, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM36 MUTATED        1      4      6
  TRIM36 WILD-TYPE     88    156    132
D1842V5, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM36 MUTATED        4      3      4
  TRIM36 WILD-TYPE    178    130     68
D1842V6, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM36 MUTATED        2      8      1      4
  TRIM36 WILD-TYPE    110     88     91    182
D1842V7, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM36 MUTATED        2      4      3      2      0      2      2
  TRIM36 WILD-TYPE     58     46     46     38     63    123     97
D1842V8, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM36 MUTATED        6      0      4      5
  TRIM36 WILD-TYPE    124     78     64    191
D1842V9, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              4               64
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM36 MUTATED        2      0      0      3      4      1      5      0
  TRIM36 WILD-TYPE     38     62     28     77     65     47     38     28
                  vv
clus               CLUS_9
  TRIM36 MUTATED        0
  TRIM36 WILD-TYPE     74
D1842V10, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              5               38
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM36 MUTATED        1      0      3      1
  TRIM36 WILD-TYPE     32     31     24     18
D1842V11, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              3               24
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM36 MUTATED        1      0      3      1
  TRIM36 WILD-TYPE     53     10     21     21
D1842V12, multiclass
        clus
vv       TRIM36 MUTATED TRIM36 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1843) Variable = DIAPH3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        2      1      0      0
  DIAPH3 WILD-TYPE     44     57     64     43
D1843V1, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH3 MUTATED        1      2      0
  DIAPH3 WILD-TYPE     50     81     77
D1843V2, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED       10      2      4      2
  DIAPH3 WILD-TYPE    168    181     97     18
D1843V3, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              2              181
  CLUS_3              4               97
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH3 MUTATED        6      1      8
  DIAPH3 WILD-TYPE     81     79     92
D1843V4, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              1               79
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH3 MUTATED        2      2      7
  DIAPH3 WILD-TYPE     87    158    131
D1843V5, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              2              158
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DIAPH3 MUTATED        7      3      1
  DIAPH3 WILD-TYPE    175    130     71
D1843V6, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        2      8      5      3
  DIAPH3 WILD-TYPE    110     88     87    183
D1843V7, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              8               88
  CLUS_3              5               87
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DIAPH3 MUTATED        2      4      4      1      4      2      1
  DIAPH3 WILD-TYPE     58     46     45     39     59    123     98
D1843V8, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        7      5      2      4
  DIAPH3 WILD-TYPE    123     73     66    192
D1843V9, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DIAPH3 MUTATED        2      4      1      4      4      1      1      0
  DIAPH3 WILD-TYPE     38     58     27     76     65     47     42     28
                  vv
clus               CLUS_9
  DIAPH3 MUTATED        1
  DIAPH3 WILD-TYPE     73
D1843V10, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        1      1      2      0
  DIAPH3 WILD-TYPE     32     30     25     19
D1843V11, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              2               25
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIAPH3 MUTATED        2      0      2      0
  DIAPH3 WILD-TYPE     52     10     22     22
D1843V12, multiclass
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1844) Variable = KDR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDR MUTATED        3      0      0      4
  KDR WILD-TYPE     43     58     64     39
D1844V1, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           3            43
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KDR MUTATED        4      2      1
  KDR WILD-TYPE     47     81     76
D1844V2, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           4            47
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDR MUTATED       23      5      2      2
  KDR WILD-TYPE    155    178     99     18
D1844V3, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1          23           155
  CLUS_2           5           178
  CLUS_3           2            99
  CLUS_4           2            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KDR MUTATED        7      6     10
  KDR WILD-TYPE     80     74     90
D1844V4, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           7            80
  CLUS_2           6            74
  CLUS_3          10            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KDR MUTATED        2     16      8
  KDR WILD-TYPE     87    144    130
D1844V5, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           2            87
  CLUS_2          16           144
  CLUS_3           8           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KDR MUTATED        9     14      3
  KDR WILD-TYPE    173    119     69
D1844V6, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           9           173
  CLUS_2          14           119
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDR MUTATED        9      8      7      8
  KDR WILD-TYPE    103     88     85    178
D1844V7, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           9           103
  CLUS_2           8            88
  CLUS_3           7            85
  CLUS_4           8           178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDR MUTATED        8      3      6      4      3      1      7
  KDR WILD-TYPE     52     47     43     36     60    124     92
D1844V8, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           8            52
  CLUS_2           3            47
  CLUS_3           6            43
  CLUS_4           4            36
  CLUS_5           3            60
  CLUS_6           1           124
  CLUS_7           7            92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDR MUTATED       12      6      2     11
  KDR WILD-TYPE    118     72     66    185
D1844V9, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1          12           118
  CLUS_2           6            72
  CLUS_3           2            66
  CLUS_4          11           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KDR MUTATED        5      4      1      4      7      4      3      2      1
  KDR WILD-TYPE     35     58     27     76     62     44     40     26     73
D1844V10, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           5            35
  CLUS_2           4            58
  CLUS_3           1            27
  CLUS_4           4            76
  CLUS_5           7            62
  CLUS_6           4            44
  CLUS_7           3            40
  CLUS_8           2            26
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDR MUTATED        0      1      2      3
  KDR WILD-TYPE     33     30     25     16
D1844V11, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           0            33
  CLUS_2           1            30
  CLUS_3           2            25
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDR MUTATED        3      0      2      1
  KDR WILD-TYPE     51     10     22     21
D1844V12, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           2            22
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1845) Variable = STK40 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK40 MUTATED        1      0      0      3
  STK40 WILD-TYPE     45     58     64     40
D1845V1, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK40 MUTATED        3      0      1
  STK40 WILD-TYPE     48     83     76
D1845V2, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK40 MUTATED        6      1      2      0
  STK40 WILD-TYPE    172    182     99     20
D1845V3, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK40 MUTATED        2      1      2
  STK40 WILD-TYPE     85     79     98
D1845V4, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK40 MUTATED        1      2      4
  STK40 WILD-TYPE     88    158    134
D1845V5, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK40 MUTATED        4      2      1
  STK40 WILD-TYPE    178    131     71
D1845V6, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK40 MUTATED        1      4      1      3
  STK40 WILD-TYPE    111     92     91    183
D1845V7, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK40 MUTATED        2      0      1      3      0      0      3
  STK40 WILD-TYPE     58     50     48     37     63    125     96
D1845V8, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             3              37
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK40 MUTATED        3      1      1      4
  STK40 WILD-TYPE    127     77     67    192
D1845V9, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STK40 MUTATED        2      1      0      0      3      1      1      1
  STK40 WILD-TYPE     38     61     28     80     66     47     42     27
                 vv
clus              CLUS_9
  STK40 MUTATED        0
  STK40 WILD-TYPE     74
D1845V10, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK40 MUTATED        0      1      1      1
  STK40 WILD-TYPE     33     30     26     18
D1845V11, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK40 MUTATED        1      0      1      1
  STK40 WILD-TYPE     53     10     23     21
D1845V12, multiclass
        clus
vv       STK40 MUTATED STK40 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1846) Variable = XRCC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC6 MUTATED        1      0      0      2
  XRCC6 WILD-TYPE     45     58     64     41
D1846V1, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC6 MUTATED        1      1      1
  XRCC6 WILD-TYPE     50     82     76
D1846V2, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC6 MUTATED        7      1      0      0
  XRCC6 WILD-TYPE    171    182    101     20
D1846V3, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC6 MUTATED        3      0      2
  XRCC6 WILD-TYPE     84     80     98
D1846V4, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC6 MUTATED        1      3      4
  XRCC6 WILD-TYPE     88    157    134
D1846V5, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC6 MUTATED        3      4      1
  XRCC6 WILD-TYPE    179    129     71
D1846V6, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC6 MUTATED        0      3      2      3
  XRCC6 WILD-TYPE    112     93     90    183
D1846V7, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XRCC6 MUTATED        1      1      4      0      0      0      2
  XRCC6 WILD-TYPE     59     49     45     40     63    125     97
D1846V8, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC6 MUTATED        2      3      0      3
  XRCC6 WILD-TYPE    128     75     68    193
D1846V9, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XRCC6 MUTATED        0      2      1      0      4      0      1      0
  XRCC6 WILD-TYPE     40     60     27     80     65     48     42     28
                 vv
clus              CLUS_9
  XRCC6 MUTATED        0
  XRCC6 WILD-TYPE     74
D1846V10, multiclass
        clus
vv       XRCC6 MUTATED XRCC6 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC6 MUTATED        1      0      0      0
  XRCC6 WILD-TYPE     32     31     27     19
D1846V11, multiclass
[1] "Remove cluster labels:" "XRCC6 MUTATED"         
clus
  XRCC6 MUTATED XRCC6 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-G5-6641 
"XRCC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC6 MUTATED        1      0      0      0
  XRCC6 WILD-TYPE     53     10     24     22
D1846V12, multiclass
[1] "Remove cluster labels:" "XRCC6 MUTATED"         
clus
  XRCC6 MUTATED XRCC6 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" "XRCC6 WILD-TYPE" 
     TCGA-G5-6641 
"XRCC6 WILD-TYPE" 

Clustering(1847) Variable = PHLDB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHLDB2 MUTATED        2      0      2      4
  PHLDB2 WILD-TYPE     44     58     62     39
D1847V1, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHLDB2 MUTATED        3      3      2
  PHLDB2 WILD-TYPE     48     80     75
D1847V2, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHLDB2 MUTATED       12      6      2      0
  PHLDB2 WILD-TYPE    166    177     99     20
D1847V3, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              6              177
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHLDB2 MUTATED        7      1      4
  PHLDB2 WILD-TYPE     80     79     96
D1847V4, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHLDB2 MUTATED        1      9      7
  PHLDB2 WILD-TYPE     88    151    131
D1847V5, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              9              151
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PHLDB2 MUTATED        8      7      2
  PHLDB2 WILD-TYPE    174    126     70
D1847V6, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHLDB2 MUTATED        2      7      2      9
  PHLDB2 WILD-TYPE    110     89     90    177
D1847V7, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              2               90
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PHLDB2 MUTATED        2      3      4      1      1      4      5
  PHLDB2 WILD-TYPE     58     47     45     39     62    121     94
D1847V8, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              4              121
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHLDB2 MUTATED        8      1      0     10
  PHLDB2 WILD-TYPE    122     77     68    186
D1847V9, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PHLDB2 MUTATED        3      2      2      2      5      1      0      1
  PHLDB2 WILD-TYPE     37     60     26     78     64     47     43     27
                  vv
clus               CLUS_9
  PHLDB2 MUTATED        3
  PHLDB2 WILD-TYPE     71
D1847V10, multiclass
        clus
vv       PHLDB2 MUTATED PHLDB2 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHLDB2 MUTATED        0      0      0      1
  PHLDB2 WILD-TYPE     33     31     27     18
D1847V11, multiclass
[1] "Remove cluster labels:" "PHLDB2 MUTATED"        
clus
  PHLDB2 MUTATED PHLDB2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-G5-6641 
"PHLDB2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHLDB2 MUTATED        0      0      1      0
  PHLDB2 WILD-TYPE     54     10     23     22
D1847V12, multiclass
[1] "Remove cluster labels:" "PHLDB2 MUTATED"        
clus
  PHLDB2 MUTATED PHLDB2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" "PHLDB2 WILD-TYPE" 
      TCGA-G5-6641 
"PHLDB2 WILD-TYPE" 

Clustering(1848) Variable = MRPL44 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL44 MUTATED        3      0      0      2
  MRPL44 WILD-TYPE     43     58     64     41
D1848V1, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL44 MUTATED        4      0      1
  MRPL44 WILD-TYPE     47     83     76
D1848V2, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL44 MUTATED        8      0      1      1
  MRPL44 WILD-TYPE    170    183    100     19
D1848V3, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL44 MUTATED        2      1      2
  MRPL44 WILD-TYPE     85     79     98
D1848V4, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL44 MUTATED        1      5      3
  MRPL44 WILD-TYPE     88    155    135
D1848V5, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL44 MUTATED        3      3      3
  MRPL44 WILD-TYPE    179    130     69
D1848V6, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL44 MUTATED        0      4      2      4
  MRPL44 WILD-TYPE    112     92     90    182
D1848V7, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPL44 MUTATED        1      1      3      1      0      0      4
  MRPL44 WILD-TYPE     59     49     46     39     63    125     95
D1848V8, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL44 MUTATED        4      0      0      6
  MRPL44 WILD-TYPE    126     78     68    190
D1848V9, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRPL44 MUTATED        1      1      0      0      6      0      1      0
  MRPL44 WILD-TYPE     39     61     28     80     63     48     42     28
                  vv
clus               CLUS_9
  MRPL44 MUTATED        1
  MRPL44 WILD-TYPE     73
D1848V10, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL44 MUTATED        0      0      0      3
  MRPL44 WILD-TYPE     33     31     27     16
D1848V11, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL44 MUTATED        2      0      1      0
  MRPL44 WILD-TYPE     52     10     23     22
D1848V12, multiclass
        clus
vv       MRPL44 MUTATED MRPL44 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1849) Variable = IDI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDI1 MUTATED        1      0      0      0
  IDI1 WILD-TYPE     45     58     64     43
D1849V1, multiclass
[1] "Remove cluster labels:" "IDI1 MUTATED"          
clus
  IDI1 MUTATED IDI1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDI1 MUTATED        0      1      0
  IDI1 WILD-TYPE     51     82     77
D1849V2, multiclass
[1] "Remove cluster labels:" "IDI1 MUTATED"          
clus
  IDI1 MUTATED IDI1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDI1 MUTATED        4      0      0      0
  IDI1 WILD-TYPE    174    183    101     20
D1849V3, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDI1 MUTATED        1      0      2
  IDI1 WILD-TYPE     86     80     98
D1849V4, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDI1 MUTATED        1      1      1
  IDI1 WILD-TYPE     88    159    137
D1849V5, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDI1 MUTATED        2      1      0
  IDI1 WILD-TYPE    180    132     72
D1849V6, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDI1 MUTATED        0      2      1      1
  IDI1 WILD-TYPE    112     94     91    185
D1849V7, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDI1 MUTATED        0      1      2      0      0      1      0
  IDI1 WILD-TYPE     60     49     47     40     63    124     99
D1849V8, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDI1 MUTATED        3      0      0      1
  IDI1 WILD-TYPE    127     78     68    195
D1849V9, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IDI1 MUTATED        0      0      1      1      2      0      0      0      0
  IDI1 WILD-TYPE     40     62     27     79     67     48     43     28     74
D1849V10, multiclass
        clus
vv       IDI1 MUTATED IDI1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDI1 MUTATED        0      0      0      2
  IDI1 WILD-TYPE     33     31     27     17
D1849V11, multiclass
[1] "Remove cluster labels:" "IDI1 MUTATED"          
clus
  IDI1 MUTATED IDI1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDI1 MUTATED        1      0      1      0
  IDI1 WILD-TYPE     53     10     23     22
D1849V12, multiclass
[1] "Remove cluster labels:" "IDI1 MUTATED"          
clus
  IDI1 MUTATED IDI1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" "IDI1 WILD-TYPE" 

Clustering(1850) Variable = SMOX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOX MUTATED        1      0      0      2
  SMOX WILD-TYPE     45     58     64     41
D1850V1, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMOX MUTATED        2      0      1
  SMOX WILD-TYPE     49     83     76
D1850V2, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOX MUTATED        7      1      0      0
  SMOX WILD-TYPE    171    182    101     20
D1850V3, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMOX MUTATED        2      2      1
  SMOX WILD-TYPE     85     78     99
D1850V4, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMOX MUTATED        1      3      4
  SMOX WILD-TYPE     88    157    134
D1850V5, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMOX MUTATED        4      3      1
  SMOX WILD-TYPE    178    130     71
D1850V6, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOX MUTATED        2      0      3      3
  SMOX WILD-TYPE    110     96     89    183
D1850V7, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             96
  CLUS_3            3             89
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMOX MUTATED        2      0      3      0      1      0      2
  SMOX WILD-TYPE     58     50     46     40     62    125     97
D1850V8, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOX MUTATED        0      3      1      4
  SMOX WILD-TYPE    130     75     67    192
D1850V9, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            0            130
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMOX MUTATED        0      3      0      0      4      0      1      0      0
  SMOX WILD-TYPE     40     59     28     80     65     48     42     28     74
D1850V10, multiclass
        clus
vv       SMOX MUTATED SMOX WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOX MUTATED        1      0      1      0
  SMOX WILD-TYPE     32     31     26     19
D1850V11, multiclass
[1] "Remove cluster labels:" "SMOX MUTATED"          
clus
  SMOX MUTATED SMOX WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-EI-6506 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMOX MUTATED        1      0      1      0
  SMOX WILD-TYPE     53     10     23     22
D1850V12, multiclass
[1] "Remove cluster labels:" "SMOX MUTATED"          
clus
  SMOX MUTATED SMOX WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-EI-6506 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" "SMOX WILD-TYPE" 

Clustering(1851) Variable = CENPJ MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPJ MUTATED        3      0      1      3
  CENPJ WILD-TYPE     43     58     63     40
D1851V1, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPJ MUTATED        3      2      2
  CENPJ WILD-TYPE     48     81     75
D1851V2, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPJ MUTATED       20      1      1      0
  CENPJ WILD-TYPE    158    182    100     20
D1851V3, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1            20             158
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPJ MUTATED        6      2      6
  CENPJ WILD-TYPE     81     78     94
D1851V4, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPJ MUTATED        5      3     11
  CENPJ WILD-TYPE     84    157    127
D1851V5, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             5              84
  CLUS_2             3             157
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPJ MUTATED        9      8      2
  CENPJ WILD-TYPE    173    125     70
D1851V6, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             9             173
  CLUS_2             8             125
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPJ MUTATED        2      7      6      7
  CENPJ WILD-TYPE    110     89     86    179
D1851V7, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CENPJ MUTATED        2      3      6      1      3      1      6
  CENPJ WILD-TYPE     58     47     43     39     60    124     93
D1851V8, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPJ MUTATED        7      6      0      8
  CENPJ WILD-TYPE    123     72     68    188
D1851V9, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             7             123
  CLUS_2             6              72
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CENPJ MUTATED        3      4      1      3      6      0      1      1
  CENPJ WILD-TYPE     37     58     27     77     63     48     42     27
                 vv
clus              CLUS_9
  CENPJ MUTATED        2
  CENPJ WILD-TYPE     72
D1851V10, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPJ MUTATED        2      2      0      3
  CENPJ WILD-TYPE     31     29     27     16
D1851V11, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPJ MUTATED        6      1      0      0
  CENPJ WILD-TYPE     48      9     24     22
D1851V12, multiclass
        clus
vv       CENPJ MUTATED CENPJ WILD-TYPE
  CLUS_1             6              48
  CLUS_2             1               9
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1852) Variable = DUSP16 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP16 MUTATED        2      1      0      3
  DUSP16 WILD-TYPE     44     57     64     40
D1852V1, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP16 MUTATED        4      1      1
  DUSP16 WILD-TYPE     47     82     76
D1852V2, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP16 MUTATED        8      2      1      0
  DUSP16 WILD-TYPE    170    181    100     20
D1852V3, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP16 MUTATED        0      1      5
  DUSP16 WILD-TYPE     87     79     95
D1852V4, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP16 MUTATED        0      7      1
  DUSP16 WILD-TYPE     89    153    137
D1852V5, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP16 MUTATED        2      5      1
  DUSP16 WILD-TYPE    180    128     71
D1852V6, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP16 MUTATED        2      4      0      5
  DUSP16 WILD-TYPE    110     92     92    181
D1852V7, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              0               92
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DUSP16 MUTATED        2      0      2      0      1      1      5
  DUSP16 WILD-TYPE     58     50     47     40     62    124     94
D1852V8, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP16 MUTATED        3      1      0      7
  DUSP16 WILD-TYPE    127     77     68    189
D1852V9, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DUSP16 MUTATED        0      1      1      1      6      1      0      0
  DUSP16 WILD-TYPE     40     61     27     79     63     47     43     28
                  vv
clus               CLUS_9
  DUSP16 MUTATED        1
  DUSP16 WILD-TYPE     73
D1852V10, multiclass
        clus
vv       DUSP16 MUTATED DUSP16 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP16 MUTATED        0      0      0      1
  DUSP16 WILD-TYPE     33     31     27     18
D1852V11, multiclass
[1] "Remove cluster labels:" "DUSP16 MUTATED"        
clus
  DUSP16 MUTATED DUSP16 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-G5-6641 
"DUSP16 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP16 MUTATED        0      0      1      0
  DUSP16 WILD-TYPE     54     10     23     22
D1852V12, multiclass
[1] "Remove cluster labels:" "DUSP16 MUTATED"        
clus
  DUSP16 MUTATED DUSP16 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" "DUSP16 WILD-TYPE" 
      TCGA-G5-6641 
"DUSP16 WILD-TYPE" 

Clustering(1853) Variable = ZHX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        2      0      1      3
  ZHX3 WILD-TYPE     44     58     63     40
D1853V1, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX3 MUTATED        4      1      1
  ZHX3 WILD-TYPE     47     82     76
D1853V2, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED       11      1      1      1
  ZHX3 WILD-TYPE    167    182    100     19
D1853V3, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1           11            167
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX3 MUTATED        3      1      3
  ZHX3 WILD-TYPE     84     79     97
D1853V4, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX3 MUTATED        2      5      4
  ZHX3 WILD-TYPE     87    155    134
D1853V5, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZHX3 MUTATED        4      6      1
  ZHX3 WILD-TYPE    178    127     71
D1853V6, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        1      3      3      7
  ZHX3 WILD-TYPE    111     93     89    179
D1853V7, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZHX3 MUTATED        2      1      3      0      1      1      6
  ZHX3 WILD-TYPE     58     49     46     40     62    124     93
D1853V8, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        5      1      0      8
  ZHX3 WILD-TYPE    125     77     68    188
D1853V9, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZHX3 MUTATED        0      2      2      0      6      0      0      2      2
  ZHX3 WILD-TYPE     40     60     26     80     63     48     43     26     72
D1853V10, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        1      0      0      2
  ZHX3 WILD-TYPE     32     31     27     17
D1853V11, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZHX3 MUTATED        2      0      1      0
  ZHX3 WILD-TYPE     52     10     23     22
D1853V12, multiclass
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1854) Variable = PDK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDK1 MUTATED        0      0      0      2
  PDK1 WILD-TYPE     46     58     64     41
D1854V1, multiclass
[1] "Remove cluster labels:" "PDK1 MUTATED"          
clus
  PDK1 MUTATED PDK1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AY-4071 
"PDK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDK1 MUTATED        0      0      2
  PDK1 WILD-TYPE     51     83     75
D1854V2, multiclass
[1] "Remove cluster labels:" "PDK1 MUTATED"          
clus
  PDK1 MUTATED PDK1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" "PDK1 WILD-TYPE" 
    TCGA-AY-4071 
"PDK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDK1 MUTATED        6      0      1      0
  PDK1 WILD-TYPE    172    183    100     20
D1854V3, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDK1 MUTATED        1      1      3
  PDK1 WILD-TYPE     86     79     97
D1854V4, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDK1 MUTATED        1      4      1
  PDK1 WILD-TYPE     88    156    137
D1854V5, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            4            156
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PDK1 MUTATED        1      4      1
  PDK1 WILD-TYPE    181    129     71
D1854V6, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDK1 MUTATED        1      3      1      2
  PDK1 WILD-TYPE    111     93     91    184
D1854V7, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDK1 MUTATED        2      2      1      1      0      0      1
  PDK1 WILD-TYPE     58     48     48     39     63    125     98
D1854V8, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDK1 MUTATED        2      1      0      4
  PDK1 WILD-TYPE    128     77     68    192
D1854V9, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PDK1 MUTATED        1      0      2      0      2      1      0      0      1
  PDK1 WILD-TYPE     39     62     26     80     67     47     43     28     73
D1854V10, multiclass
        clus
vv       PDK1 MUTATED PDK1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDK1 MUTATED        0      0      0      0
  PDK1 WILD-TYPE     33     31     27     19
D1854V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDK1 MUTATED        0      0      0      0
  PDK1 WILD-TYPE     54     10     24     22
D1854V12, multiclass

Clustering(1855) Variable = EPHA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED        4      3      1      5
  EPHA5 WILD-TYPE     42     55     63     38
D1855V1, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             3              55
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED        6      4      3
  EPHA5 WILD-TYPE     45     79     74
D1855V2, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             4              79
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED       22      9      8      0
  EPHA5 WILD-TYPE    156    174     93     20
D1855V3, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            22             156
  CLUS_2             9             174
  CLUS_3             8              93
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED       12      2     12
  EPHA5 WILD-TYPE     75     78     88
D1855V4, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            12              75
  CLUS_2             2              78
  CLUS_3            12              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED        5     13     17
  EPHA5 WILD-TYPE     84    147    121
D1855V5, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             5              84
  CLUS_2            13             147
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED       17     14      4
  EPHA5 WILD-TYPE    165    119     68
D1855V6, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            17             165
  CLUS_2            14             119
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED        7     10      9     13
  EPHA5 WILD-TYPE    105     86     83    173
D1855V7, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             7             105
  CLUS_2            10              86
  CLUS_3             9              83
  CLUS_4            13             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPHA5 MUTATED        7      4      7      1      6      3     11
  EPHA5 WILD-TYPE     53     46     42     39     57    122     88
D1855V8, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             7              53
  CLUS_2             4              46
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             6              57
  CLUS_6             3             122
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED       12      8      4     14
  EPHA5 WILD-TYPE    118     70     64    182
D1855V9, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             8              70
  CLUS_3             4              64
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EPHA5 MUTATED        3      6      1      5     12      3      3      1
  EPHA5 WILD-TYPE     37     56     27     75     57     45     40     27
                 vv
clus              CLUS_9
  EPHA5 MUTATED        4
  EPHA5 WILD-TYPE     70
D1855V10, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             5              75
  CLUS_5            12              57
  CLUS_6             3              45
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED        3      3      2      2
  EPHA5 WILD-TYPE     30     28     25     17
D1855V11, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              28
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED        5      0      3      2
  EPHA5 WILD-TYPE     49     10     21     20
D1855V12, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1856) Variable = SPAST MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAST MUTATED        3      0      0      2
  SPAST WILD-TYPE     43     58     64     41
D1856V1, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAST MUTATED        4      0      1
  SPAST WILD-TYPE     47     83     76
D1856V2, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAST MUTATED        9      1      0      0
  SPAST WILD-TYPE    169    182    101     20
D1856V3, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAST MUTATED        4      1      0
  SPAST WILD-TYPE     83     79    100
D1856V4, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAST MUTATED        2      3      4
  SPAST WILD-TYPE     87    157    134
D1856V5, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPAST MUTATED        2      3      4
  SPAST WILD-TYPE    180    130     68
D1856V6, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAST MUTATED        1      2      2      5
  SPAST WILD-TYPE    111     94     90    181
D1856V7, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPAST MUTATED        1      1      3      0      1      0      4
  SPAST WILD-TYPE     59     49     46     40     62    125     95
D1856V8, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAST MUTATED        1      3      0      6
  SPAST WILD-TYPE    129     75     68    190
D1856V9, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPAST MUTATED        0      3      0      0      6      0      0      0
  SPAST WILD-TYPE     40     59     28     80     63     48     43     28
                 vv
clus              CLUS_9
  SPAST MUTATED        1
  SPAST WILD-TYPE     73
D1856V10, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAST MUTATED        1      0      0      3
  SPAST WILD-TYPE     32     31     27     16
D1856V11, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAST MUTATED        3      0      1      0
  SPAST WILD-TYPE     51     10     23     22
D1856V12, multiclass
        clus
vv       SPAST MUTATED SPAST WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1857) Variable = SIN3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIN3A MUTATED        2      0      0      3
  SIN3A WILD-TYPE     44     58     64     40
D1857V1, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIN3A MUTATED        2      1      2
  SIN3A WILD-TYPE     49     82     75
D1857V2, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIN3A MUTATED       17      3      0      0
  SIN3A WILD-TYPE    161    180    101     20
D1857V3, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1            17             161
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIN3A MUTATED        6      3      6
  SIN3A WILD-TYPE     81     77     94
D1857V4, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             6              81
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIN3A MUTATED        2      9      8
  SIN3A WILD-TYPE     87    151    130
D1857V5, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIN3A MUTATED       11      5      3
  SIN3A WILD-TYPE    171    128     69
D1857V6, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1            11             171
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIN3A MUTATED        4      4      6      6
  SIN3A WILD-TYPE    108     92     86    180
D1857V7, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             6              86
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIN3A MUTATED        3      2      7      1      2      0      5
  SIN3A WILD-TYPE     57     48     42     39     61    125     94
D1857V8, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIN3A MUTATED        9      4      1      6
  SIN3A WILD-TYPE    121     74     67    190
D1857V9, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SIN3A MUTATED        1      4      3      0      7      2      2      0
  SIN3A WILD-TYPE     39     58     25     80     62     46     41     28
                 vv
clus              CLUS_9
  SIN3A MUTATED        1
  SIN3A WILD-TYPE     73
D1857V10, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             7              62
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIN3A MUTATED        2      1      1      3
  SIN3A WILD-TYPE     31     30     26     16
D1857V11, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIN3A MUTATED        4      0      2      1
  SIN3A WILD-TYPE     50     10     22     21
D1857V12, multiclass
        clus
vv       SIN3A MUTATED SIN3A WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1858) Variable = C1ORF88 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF88 MUTATED        0      0      0      2
  C1ORF88 WILD-TYPE     46     58     64     41
D1858V1, multiclass
[1] "Remove cluster labels:" "C1ORF88 MUTATED"       
clus
  C1ORF88 MUTATED C1ORF88 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AY-4071 
"C1ORF88 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF88 MUTATED        1      1      0
  C1ORF88 WILD-TYPE     50     82     77
D1858V2, multiclass
[1] "Remove cluster labels:" "C1ORF88 MUTATED"       
clus
  C1ORF88 MUTATED C1ORF88 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" "C1ORF88 WILD-TYPE" 
       TCGA-AY-4071 
"C1ORF88 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF88 MUTATED        5      1      0      0
  C1ORF88 WILD-TYPE    173    182    101     20
D1858V3, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF88 MUTATED        1      1      2
  C1ORF88 WILD-TYPE     86     79     98
D1858V4, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF88 MUTATED        1      3      1
  C1ORF88 WILD-TYPE     88    157    137
D1858V5, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF88 MUTATED        2      2      1
  C1ORF88 WILD-TYPE    180    131     71
D1858V6, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF88 MUTATED        2      1      1      2
  C1ORF88 WILD-TYPE    110     95     91    184
D1858V7, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C1ORF88 MUTATED        1      0      1      1      1      0      2
  C1ORF88 WILD-TYPE     59     50     48     39     62    125     97
D1858V8, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF88 MUTATED        3      1      0      2
  C1ORF88 WILD-TYPE    127     77     68    194
D1858V9, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C1ORF88 MUTATED        1      1      1      0      2      1      0      0
  C1ORF88 WILD-TYPE     39     61     27     80     67     47     43     28
                   vv
clus                CLUS_9
  C1ORF88 MUTATED        0
  C1ORF88 WILD-TYPE     74
D1858V10, multiclass
        clus
vv       C1ORF88 MUTATED C1ORF88 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF88 MUTATED        0      0      0      0
  C1ORF88 WILD-TYPE     33     31     27     19
D1858V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF88 MUTATED        0      0      0      0
  C1ORF88 WILD-TYPE     54     10     24     22
D1858V12, multiclass

Clustering(1859) Variable = GLB1L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLB1L2 MUTATED        4      0      0      1
  GLB1L2 WILD-TYPE     42     58     64     42
D1859V1, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLB1L2 MUTATED        4      1      0
  GLB1L2 WILD-TYPE     47     82     77
D1859V2, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLB1L2 MUTATED       12      1      1      0
  GLB1L2 WILD-TYPE    166    182    100     20
D1859V3, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLB1L2 MUTATED        2      0      7
  GLB1L2 WILD-TYPE     85     80     93
D1859V4, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLB1L2 MUTATED        2      5      5
  GLB1L2 WILD-TYPE     87    155    133
D1859V5, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              5              155
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLB1L2 MUTATED        5      5      2
  GLB1L2 WILD-TYPE    177    128     70
D1859V6, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              5              128
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLB1L2 MUTATED        0      2      7      5
  GLB1L2 WILD-TYPE    112     94     85    181
D1859V7, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              7               85
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLB1L2 MUTATED        0      0      8      0      1      0      5
  GLB1L2 WILD-TYPE     60     50     41     40     62    125     94
D1859V8, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLB1L2 MUTATED        5      2      0      7
  GLB1L2 WILD-TYPE    125     76     68    189
D1859V9, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GLB1L2 MUTATED        0      1      1      1      9      0      1      1
  GLB1L2 WILD-TYPE     40     61     27     79     60     48     42     27
                  vv
clus               CLUS_9
  GLB1L2 MUTATED        0
  GLB1L2 WILD-TYPE     74
D1859V10, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              9               60
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLB1L2 MUTATED        1      0      0      6
  GLB1L2 WILD-TYPE     32     31     27     13
D1859V11, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              6               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLB1L2 MUTATED        4      0      3      0
  GLB1L2 WILD-TYPE     50     10     21     22
D1859V12, multiclass
        clus
vv       GLB1L2 MUTATED GLB1L2 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1860) Variable = OSBPL1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        1      0      0      1
  OSBPL1A WILD-TYPE     45     58     64     42
D1860V1, multiclass
[1] "Remove cluster labels:" "OSBPL1A MUTATED"       
clus
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AY-4071 
"OSBPL1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL1A MUTATED        1      1      0
  OSBPL1A WILD-TYPE     50     82     77
D1860V2, multiclass
[1] "Remove cluster labels:" "OSBPL1A MUTATED"       
clus
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-AY-4071 
"OSBPL1A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        8      0      2      0
  OSBPL1A WILD-TYPE    170    183     99     20
D1860V3, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL1A MUTATED        4      1      4
  OSBPL1A WILD-TYPE     83     79     96
D1860V4, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               4                83
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL1A MUTATED        2      1      7
  OSBPL1A WILD-TYPE     87    159    131
D1860V5, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               2                87
  CLUS_2               1               159
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSBPL1A MUTATED        6      2      2
  OSBPL1A WILD-TYPE    176    131     70
D1860V6, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               6               176
  CLUS_2               2               131
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        1      5      3      2
  OSBPL1A WILD-TYPE    111     91     89    184
D1860V7, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OSBPL1A MUTATED        1      0      5      1      2      0      2
  OSBPL1A WILD-TYPE     59     50     44     39     61    125     97
D1860V8, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        4      2      1      4
  OSBPL1A WILD-TYPE    126     76     67    192
D1860V9, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OSBPL1A MUTATED        1      3      1      2      4      0      0      0
  OSBPL1A WILD-TYPE     39     59     27     78     65     48     43     28
                   vv
clus                CLUS_9
  OSBPL1A MUTATED        0
  OSBPL1A WILD-TYPE     74
D1860V10, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        0      1      2      2
  OSBPL1A WILD-TYPE     33     30     25     17
D1860V11, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               2                25
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL1A MUTATED        2      0      2      1
  OSBPL1A WILD-TYPE     52     10     22     21
D1860V12, multiclass
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1861) Variable = AFM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFM MUTATED        1      1      0      4
  AFM WILD-TYPE     45     57     64     39
D1861V1, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1            45
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFM MUTATED        3      2      1
  AFM WILD-TYPE     48     81     76
D1861V2, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           3            48
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFM MUTATED       10      3      4      0
  AFM WILD-TYPE    168    180     97     20
D1861V3, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1          10           168
  CLUS_2           3           180
  CLUS_3           4            97
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFM MUTATED        2      3      7
  AFM WILD-TYPE     85     77     93
D1861V4, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           2            85
  CLUS_2           3            77
  CLUS_3           7            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFM MUTATED        3     10      3
  AFM WILD-TYPE     86    150    135
D1861V5, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           3            86
  CLUS_2          10           150
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFM MUTATED        6      6      4
  AFM WILD-TYPE    176    127     68
D1861V6, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           6           176
  CLUS_2           6           127
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFM MUTATED        3      4      4      6
  AFM WILD-TYPE    109     92     88    180
D1861V7, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           3           109
  CLUS_2           4            92
  CLUS_3           4            88
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFM MUTATED        4      2      3      1      2      1      4
  AFM WILD-TYPE     56     48     46     39     61    124     95
D1861V8, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           4            56
  CLUS_2           2            48
  CLUS_3           3            46
  CLUS_4           1            39
  CLUS_5           2            61
  CLUS_6           1           124
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFM MUTATED        6      2      3      5
  AFM WILD-TYPE    124     76     65    191
D1861V9, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           6           124
  CLUS_2           2            76
  CLUS_3           3            65
  CLUS_4           5           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AFM MUTATED        2      3      3      6      2      0      0      0      0
  AFM WILD-TYPE     38     59     25     74     67     48     43     28     74
D1861V10, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           2            38
  CLUS_2           3            59
  CLUS_3           3            25
  CLUS_4           6            74
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFM MUTATED        0      0      2      3
  AFM WILD-TYPE     33     31     25     16
D1861V11, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            31
  CLUS_3           2            25
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFM MUTATED        1      0      4      0
  AFM WILD-TYPE     53     10     20     22
D1861V12, multiclass
        clus
vv       AFM MUTATED AFM WILD-TYPE
  CLUS_1           1            53
  CLUS_2           0            10
  CLUS_3           4            20
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1862) Variable = YIPF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        1      0      0      2
  YIPF1 WILD-TYPE     45     58     64     41
D1862V1, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        2      0      1
  YIPF1 WILD-TYPE     49     83     76
D1862V2, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        6      0      0      0
  YIPF1 WILD-TYPE    172    183    101     20
D1862V3, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        1      1      1
  YIPF1 WILD-TYPE     86     79     99
D1862V4, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        1      2      1
  YIPF1 WILD-TYPE     88    158    137
D1862V5, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF1 MUTATED        0      3      1
  YIPF1 WILD-TYPE    182    130     71
D1862V6, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             0             182
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        1      2      0      3
  YIPF1 WILD-TYPE    111     94     92    183
D1862V7, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YIPF1 MUTATED        1      3      0      0      0      0      2
  YIPF1 WILD-TYPE     59     47     49     40     63    125     97
D1862V8, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        2      0      0      4
  YIPF1 WILD-TYPE    128     78     68    192
D1862V9, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  YIPF1 MUTATED        1      0      0      1      3      0      0      0
  YIPF1 WILD-TYPE     39     62     28     79     66     48     43     28
                 vv
clus              CLUS_9
  YIPF1 MUTATED        1
  YIPF1 WILD-TYPE     73
D1862V10, multiclass
        clus
vv       YIPF1 MUTATED YIPF1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        0      0      0      0
  YIPF1 WILD-TYPE     33     31     27     19
D1862V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF1 MUTATED        0      0      0      0
  YIPF1 WILD-TYPE     54     10     24     22
D1862V12, multiclass

Clustering(1863) Variable = TSPAN7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN7 MUTATED        2      0      0      0
  TSPAN7 WILD-TYPE     44     58     64     43
D1863V1, multiclass
[1] "Remove cluster labels:" "TSPAN7 MUTATED"        
clus
  TSPAN7 MUTATED TSPAN7 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3968 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AY-4071 
"TSPAN7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPAN7 MUTATED        2      0      0
  TSPAN7 WILD-TYPE     49     83     77
D1863V2, multiclass
[1] "Remove cluster labels:" "TSPAN7 MUTATED"        
clus
  TSPAN7 MUTATED TSPAN7 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3968 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" "TSPAN7 WILD-TYPE" 
      TCGA-AY-4071 
"TSPAN7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN7 MUTATED        6      1      2      0
  TSPAN7 WILD-TYPE    172    182     99     20
D1863V3, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPAN7 MUTATED        3      0      4
  TSPAN7 WILD-TYPE     84     80     96
D1863V4, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPAN7 MUTATED        1      1      5
  TSPAN7 WILD-TYPE     88    159    133
D1863V5, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPAN7 MUTATED        5      1      1
  TSPAN7 WILD-TYPE    177    132     71
D1863V6, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN7 MUTATED        1      2      4      2
  TSPAN7 WILD-TYPE    111     94     88    184
D1863V7, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSPAN7 MUTATED        1      0      5      0      1      0      2
  TSPAN7 WILD-TYPE     59     50     44     40     62    125     97
D1863V8, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN7 MUTATED        4      2      0      3
  TSPAN7 WILD-TYPE    126     76     68    193
D1863V9, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TSPAN7 MUTATED        0      4      0      1      4      0      0      0
  TSPAN7 WILD-TYPE     40     58     28     79     65     48     43     28
                  vv
clus               CLUS_9
  TSPAN7 MUTATED        0
  TSPAN7 WILD-TYPE     74
D1863V10, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN7 MUTATED        1      1      0      1
  TSPAN7 WILD-TYPE     32     30     27     18
D1863V11, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN7 MUTATED        3      0      0      0
  TSPAN7 WILD-TYPE     51     10     24     22
D1863V12, multiclass
        clus
vv       TSPAN7 MUTATED TSPAN7 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1864) Variable = MLLT10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        2      2      0      1
  MLLT10 WILD-TYPE     44     56     64     42
D1864V1, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        2      3      0
  MLLT10 WILD-TYPE     49     80     77
D1864V2, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        8      2      0      1
  MLLT10 WILD-TYPE    170    181    101     19
D1864V3, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        3      1      1
  MLLT10 WILD-TYPE     84     79     99
D1864V4, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        1      1      7
  MLLT10 WILD-TYPE     88    159    131
D1864V5, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        4      3      2
  MLLT10 WILD-TYPE    178    130     70
D1864V6, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        2      1      3      4
  MLLT10 WILD-TYPE    110     95     89    182
D1864V7, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              3               89
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLLT10 MUTATED        0      1      1      0      3      2      3
  MLLT10 WILD-TYPE     60     49     48     40     60    123     96
D1864V8, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        0      4      0      7
  MLLT10 WILD-TYPE    130     74     68    189
D1864V9, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MLLT10 MUTATED        0      3      1      1      2      3      0      0
  MLLT10 WILD-TYPE     40     59     27     79     67     45     43     28
                  vv
clus               CLUS_9
  MLLT10 MUTATED        1
  MLLT10 WILD-TYPE     73
D1864V10, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              3               45
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      2      0      0
  MLLT10 WILD-TYPE     32     29     27     19
D1864V11, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      1      0      1
  MLLT10 WILD-TYPE     53      9     24     21
D1864V12, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1865) Variable = CCDC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC6 MUTATED        2      0      0      0
  CCDC6 WILD-TYPE     44     58     64     43
D1865V1, multiclass
[1] "Remove cluster labels:" "CCDC6 MUTATED"         
clus
  CCDC6 MUTATED CCDC6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3516      TCGA-AA-3517 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AY-4071 
"CCDC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC6 MUTATED        2      0      0
  CCDC6 WILD-TYPE     49     83     77
D1865V2, multiclass
[1] "Remove cluster labels:" "CCDC6 MUTATED"         
clus
  CCDC6 MUTATED CCDC6 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3516      TCGA-AA-3517 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AY-4071 
"CCDC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC6 MUTATED        9      2      0      0
  CCDC6 WILD-TYPE    169    181    101     20
D1865V3, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC6 MUTATED        5      0      4
  CCDC6 WILD-TYPE     82     80     96
D1865V4, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC6 MUTATED        2      3      6
  CCDC6 WILD-TYPE     87    157    132
D1865V5, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCDC6 MUTATED        8      2      1
  CCDC6 WILD-TYPE    174    131     71
D1865V6, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC6 MUTATED        1      4      3      3
  CCDC6 WILD-TYPE    111     92     89    183
D1865V7, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC6 MUTATED        1      2      3      0      2      1      2
  CCDC6 WILD-TYPE     59     48     46     40     61    124     97
D1865V8, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC6 MUTATED        5      4      0      2
  CCDC6 WILD-TYPE    125     74     68    194
D1865V9, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC6 MUTATED        1      3      1      1      2      1      1      0
  CCDC6 WILD-TYPE     39     59     27     79     67     47     42     28
                 vv
clus              CLUS_9
  CCDC6 MUTATED        1
  CCDC6 WILD-TYPE     73
D1865V10, multiclass
        clus
vv       CCDC6 MUTATED CCDC6 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC6 MUTATED        1      0      0      1
  CCDC6 WILD-TYPE     32     31     27     18
D1865V11, multiclass
[1] "Remove cluster labels:" "CCDC6 MUTATED"         
clus
  CCDC6 MUTATED CCDC6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6141      TCGA-A6-6142 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC6 MUTATED        2      0      0      0
  CCDC6 WILD-TYPE     52     10     24     22
D1865V12, multiclass
[1] "Remove cluster labels:" "CCDC6 MUTATED"         
clus
  CCDC6 MUTATED CCDC6 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6141      TCGA-A6-6142 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676      TCGA-CM-6677 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" "CCDC6 WILD-TYPE" 

Clustering(1866) Variable = SGOL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        1      0      0      3
  SGOL2 WILD-TYPE     45     58     64     40
D1866V1, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        1      1      2
  SGOL2 WILD-TYPE     50     82     75
D1866V2, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED       11      3      1      0
  SGOL2 WILD-TYPE    167    180    100     20
D1866V3, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        4      5      3
  SGOL2 WILD-TYPE     83     75     97
D1866V4, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             5              75
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        2      4      8
  SGOL2 WILD-TYPE     87    156    130
D1866V5, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        8      5      1
  SGOL2 WILD-TYPE    174    128     71
D1866V6, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        3      4      4      5
  SGOL2 WILD-TYPE    109     92     88    181
D1866V7, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SGOL2 MUTATED        3      2      4      0      3      1      3
  SGOL2 WILD-TYPE     57     48     45     40     60    124     96
D1866V8, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        7      3      0      6
  SGOL2 WILD-TYPE    123     75     68    190
D1866V9, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SGOL2 MUTATED        0      4      4      3      3      0      1      0
  SGOL2 WILD-TYPE     40     58     24     77     66     48     42     28
                 vv
clus              CLUS_9
  SGOL2 MUTATED        1
  SGOL2 WILD-TYPE     73
D1866V10, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             4              24
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        0      1      1      1
  SGOL2 WILD-TYPE     33     30     26     18
D1866V11, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        2      0      1      0
  SGOL2 WILD-TYPE     52     10     23     22
D1866V12, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1867) Variable = HECW1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW1 MUTATED        1      0      1      4
  HECW1 WILD-TYPE     45     58     63     39
D1867V1, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW1 MUTATED        2      1      3
  HECW1 WILD-TYPE     49     82     74
D1867V2, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW1 MUTATED       24      8      3      3
  HECW1 WILD-TYPE    154    175     98     17
D1867V3, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1            24             154
  CLUS_2             8             175
  CLUS_3             3              98
  CLUS_4             3              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW1 MUTATED       13      6     13
  HECW1 WILD-TYPE     74     74     87
D1867V4, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1            13              74
  CLUS_2             6              74
  CLUS_3            13              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW1 MUTATED        7     13     15
  HECW1 WILD-TYPE     82    147    123
D1867V5, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             7              82
  CLUS_2            13             147
  CLUS_3            15             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HECW1 MUTATED       19     12      4
  HECW1 WILD-TYPE    163    121     68
D1867V6, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1            19             163
  CLUS_2            12             121
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW1 MUTATED        9     14      8      8
  HECW1 WILD-TYPE    103     82     84    178
D1867V7, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             9             103
  CLUS_2            14              82
  CLUS_3             8              84
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HECW1 MUTATED        6      5     11      7      3      1      6
  HECW1 WILD-TYPE     54     45     38     33     60    124     93
D1867V8, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             6              54
  CLUS_2             5              45
  CLUS_3            11              38
  CLUS_4             7              33
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW1 MUTATED       17      6      5     10
  HECW1 WILD-TYPE    113     72     63    186
D1867V9, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1            17             113
  CLUS_2             6              72
  CLUS_3             5              63
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HECW1 MUTATED        4      6      4      5      9      3      6      0
  HECW1 WILD-TYPE     36     56     24     75     60     45     37     28
                 vv
clus              CLUS_9
  HECW1 MUTATED        1
  HECW1 WILD-TYPE     73
D1867V10, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             6              56
  CLUS_3             4              24
  CLUS_4             5              75
  CLUS_5             9              60
  CLUS_6             3              45
  CLUS_7             6              37
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW1 MUTATED       10      0      3      3
  HECW1 WILD-TYPE     23     31     24     16
D1867V11, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1            10              23
  CLUS_2             0              31
  CLUS_3             3              24
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECW1 MUTATED        8      0      5      3
  HECW1 WILD-TYPE     46     10     19     19
D1867V12, multiclass
        clus
vv       HECW1 MUTATED HECW1 WILD-TYPE
  CLUS_1             8              46
  CLUS_2             0              10
  CLUS_3             5              19
  CLUS_4             3              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1868) Variable = C14ORF180 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF180 MUTATED        0      0      0      0
  C14ORF180 WILD-TYPE     46     58     64     43
D1868V1, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF180 MUTATED        0      0      0
  C14ORF180 WILD-TYPE     51     83     77
D1868V2, multiclass
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF180 MUTATED        3      1      0      0
  C14ORF180 WILD-TYPE    175    182    101     20
D1868V3, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 3                 175
  CLUS_2                 1                 182
  CLUS_3                 0                 101
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF180 MUTATED        1      1      2
  C14ORF180 WILD-TYPE     86     79     98
D1868V4, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 1                  86
  CLUS_2                 1                  79
  CLUS_3                 2                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF180 MUTATED        0      2      2
  C14ORF180 WILD-TYPE     89    158    136
D1868V5, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 2                 158
  CLUS_3                 2                 136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF180 MUTATED        2      2      0
  C14ORF180 WILD-TYPE    180    131     72
D1868V6, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 2                 180
  CLUS_2                 2                 131
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF180 MUTATED        1      1      2      0
  C14ORF180 WILD-TYPE    111     95     90    186
D1868V7, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 1                  95
  CLUS_3                 2                  90
  CLUS_4                 0                 186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C14ORF180 MUTATED        0      1      3      0      0      0      0
  C14ORF180 WILD-TYPE     60     49     46     40     63    125     99
D1868V8, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 1                  49
  CLUS_3                 3                  46
  CLUS_4                 0                  40
  CLUS_5                 0                  63
  CLUS_6                 0                 125
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF180 MUTATED        3      0      1      0
  C14ORF180 WILD-TYPE    127     78     67    196
D1868V9, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 3                 127
  CLUS_2                 0                  78
  CLUS_3                 1                  67
  CLUS_4                 0                 196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C14ORF180 MUTATED        0      1      0      0      1      0      2      0
  C14ORF180 WILD-TYPE     40     61     28     80     68     48     41     28
                     vv
clus                  CLUS_9
  C14ORF180 MUTATED        0
  C14ORF180 WILD-TYPE     74
D1868V10, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 1                  61
  CLUS_3                 0                  28
  CLUS_4                 0                  80
  CLUS_5                 1                  68
  CLUS_6                 0                  48
  CLUS_7                 2                  41
  CLUS_8                 0                  28
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF180 MUTATED        1      0      0      2
  C14ORF180 WILD-TYPE     32     31     27     17
D1868V11, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 0                  31
  CLUS_3                 0                  27
  CLUS_4                 2                  17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF180 MUTATED        1      0      1      1
  C14ORF180 WILD-TYPE     53     10     23     21
D1868V12, multiclass
        clus
vv       C14ORF180 MUTATED C14ORF180 WILD-TYPE
  CLUS_1                 1                  53
  CLUS_2                 0                  10
  CLUS_3                 1                  23
  CLUS_4                 1                  21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1869) Variable = USP14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP14 MUTATED        0      0      0      0
  USP14 WILD-TYPE     46     58     64     43
D1869V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP14 MUTATED        0      0      0
  USP14 WILD-TYPE     51     83     77
D1869V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP14 MUTATED        6      0      0      1
  USP14 WILD-TYPE    172    183    101     19
D1869V3, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP14 MUTATED        4      0      2
  USP14 WILD-TYPE     83     80     98
D1869V4, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP14 MUTATED        0      3      3
  USP14 WILD-TYPE     89    157    135
D1869V5, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP14 MUTATED        3      3      0
  USP14 WILD-TYPE    179    130     72
D1869V6, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP14 MUTATED        0      2      3      2
  USP14 WILD-TYPE    112     94     89    184
D1869V7, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  USP14 MUTATED        0      1      3      0      1      0      2
  USP14 WILD-TYPE     60     49     46     40     62    125     97
D1869V8, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP14 MUTATED        3      2      0      2
  USP14 WILD-TYPE    127     76     68    194
D1869V9, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  USP14 MUTATED        1      2      0      1      2      0      0      0
  USP14 WILD-TYPE     39     60     28     79     67     48     43     28
                 vv
clus              CLUS_9
  USP14 MUTATED        1
  USP14 WILD-TYPE     73
D1869V10, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP14 MUTATED        1      1      0      1
  USP14 WILD-TYPE     32     30     27     18
D1869V11, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP14 MUTATED        2      0      0      1
  USP14 WILD-TYPE     52     10     24     21
D1869V12, multiclass
        clus
vv       USP14 MUTATED USP14 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1870) Variable = TMEM144 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM144 MUTATED        1      1      0      2
  TMEM144 WILD-TYPE     45     57     64     41
D1870V1, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM144 MUTATED        1      0      3
  TMEM144 WILD-TYPE     50     83     74
D1870V2, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               0                83
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM144 MUTATED        7      1      0      0
  TMEM144 WILD-TYPE    171    182    101     20
D1870V3, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM144 MUTATED        1      0      3
  TMEM144 WILD-TYPE     86     80     97
D1870V4, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM144 MUTATED        1      3      2
  TMEM144 WILD-TYPE     88    157    136
D1870V5, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM144 MUTATED        4      1      1
  TMEM144 WILD-TYPE    178    132     71
D1870V6, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM144 MUTATED        0      2      2      4
  TMEM144 WILD-TYPE    112     94     90    182
D1870V7, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM144 MUTATED        1      0      4      0      0      1      2
  TMEM144 WILD-TYPE     59     50     45     40     63    124     97
D1870V8, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM144 MUTATED        2      1      0      5
  TMEM144 WILD-TYPE    128     77     68    191
D1870V9, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM144 MUTATED        1      1      1      0      4      1      0      0
  TMEM144 WILD-TYPE     39     61     27     80     65     47     43     28
                   vv
clus                CLUS_9
  TMEM144 MUTATED        0
  TMEM144 WILD-TYPE     74
D1870V10, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM144 MUTATED        1      0      0      2
  TMEM144 WILD-TYPE     32     31     27     17
D1870V11, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM144 MUTATED        2      0      1      0
  TMEM144 WILD-TYPE     52     10     23     22
D1870V12, multiclass
        clus
vv       TMEM144 MUTATED TMEM144 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1871) Variable = PIAS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS2 MUTATED        1      0      0      2
  PIAS2 WILD-TYPE     45     58     64     41
D1871V1, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS2 MUTATED        1      1      1
  PIAS2 WILD-TYPE     50     82     76
D1871V2, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS2 MUTATED        4      1      0      0
  PIAS2 WILD-TYPE    174    182    101     20
D1871V3, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS2 MUTATED        1      0      1
  PIAS2 WILD-TYPE     86     80     99
D1871V4, multiclass
[1] "Remove cluster labels:" "PIAS2 MUTATED"         
clus
  PIAS2 MUTATED PIAS2 WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AA-3663      TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AD-6890      TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AF-2693      TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AF-6672      TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-4681      TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-4747      TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-5348      TCGA-CM-5349      TCGA-CM-5861      TCGA-CM-5862 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-5538 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929      TCGA-D5-6930 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000      TCGA-DC-5337 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28C 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DM-A28H 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G5-6641 
"PIAS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS2 MUTATED        0      2      2
  PIAS2 WILD-TYPE     89    158    136
D1871V5, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS2 MUTATED        3      1      0
  PIAS2 WILD-TYPE    179    132     72
D1871V6, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS2 MUTATED        0      0      2      3
  PIAS2 WILD-TYPE    112     96     90    183
D1871V7, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIAS2 MUTATED        1      1      1      0      0      1      1
  PIAS2 WILD-TYPE     59     49     48     40     63    124     98
D1871V8, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS2 MUTATED        1      1      0      3
  PIAS2 WILD-TYPE    129     77     68    193
D1871V9, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PIAS2 MUTATED        1      1      0      1      2      0      0      0
  PIAS2 WILD-TYPE     39     61     28     79     67     48     43     28
                 vv
clus              CLUS_9
  PIAS2 MUTATED        0
  PIAS2 WILD-TYPE     74
D1871V10, multiclass
        clus
vv       PIAS2 MUTATED PIAS2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS2 MUTATED        1      0      0      1
  PIAS2 WILD-TYPE     32     31     27     18
D1871V11, multiclass
[1] "Remove cluster labels:" "PIAS2 MUTATED"         
clus
  PIAS2 MUTATED PIAS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS2 MUTATED        2      0      0      0
  PIAS2 WILD-TYPE     52     10     24     22
D1871V12, multiclass
[1] "Remove cluster labels:" "PIAS2 MUTATED"         
clus
  PIAS2 MUTATED PIAS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" "PIAS2 WILD-TYPE" 

Clustering(1872) Variable = HIST4H4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST4H4 MUTATED        0      0      0      0
  HIST4H4 WILD-TYPE     46     58     64     43
D1872V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HIST4H4 MUTATED        0      0      0
  HIST4H4 WILD-TYPE     51     83     77
D1872V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST4H4 MUTATED        2      1      0      0
  HIST4H4 WILD-TYPE    176    182    101     20
D1872V3, multiclass
        clus
vv       HIST4H4 MUTATED HIST4H4 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HIST4H4 MUTATED        1      0      2
  HIST4H4 WILD-TYPE     86     80     98
D1872V4, multiclass
        clus
vv       HIST4H4 MUTATED HIST4H4 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HIST4H4 MUTATED        1      1      0
  HIST4H4 WILD-TYPE     88    159    138
D1872V5, multiclass
[1] "Remove cluster labels:" "HIST4H4 MUTATED"       
clus
  HIST4H4 MUTATED HIST4H4 WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3489        TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3510        TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3525        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3558 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3712        TCGA-AA-3715        TCGA-AA-3811 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848        TCGA-AA-3850 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856        TCGA-AA-3861 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3955 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AD-6889        TCGA-AD-6899        TCGA-AD-6965        TCGA-AF-2689 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-5654        TCGA-AF-6136 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3578 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3742 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3885 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4682 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6621 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918        TCGA-CM-4743 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-DC-5337 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D4 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G5-6641 
"HIST4H4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HIST4H4 MUTATED        0      1      1
  HIST4H4 WILD-TYPE    182    132     71
D1872V6, multiclass
[1] "Remove cluster labels:" "HIST4H4 MUTATED"       
clus
  HIST4H4 MUTATED HIST4H4 WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3489        TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3510        TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3525        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3558 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3712        TCGA-AA-3715        TCGA-AA-3811 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848        TCGA-AA-3850 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856        TCGA-AA-3861 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3955 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AD-6889        TCGA-AD-6899        TCGA-AD-6965        TCGA-AF-2689 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-5654        TCGA-AF-6136 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3578 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3742 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3885 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-6196        TCGA-AY-6197        TCGA-AY-6386 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4682 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6621 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918        TCGA-CM-4743 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-DC-5337 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D4 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" "HIST4H4 WILD-TYPE" 
       TCGA-G5-6641 
"HIST4H4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST4H4 MUTATED        0      3      0      0
  HIST4H4 WILD-TYPE    112     93     92    186
D1872V7, multiclass
        clus
vv       HIST4H4 MUTATED HIST4H4 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               0                92
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST4H4 MUTATED        0      1      0      2      0      0      0
  HIST4H4 WILD-TYPE     60     49     49     38     63    125     99
D1872V8, multiclass
        clus
vv       HIST4H4 MUTATED HIST4H4 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               0                49
  CLUS_4               2                38
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST4H4 MUTATED        3      0      0      0
  HIST4H4 WILD-TYPE    127     78     68    196
D1872V9, multiclass
        clus
vv       HIST4H4 MUTATED HIST4H4 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST4H4 MUTATED        2      0      0      0      0      0      1      0
  HIST4H4 WILD-TYPE     38     62     28     80     69     48     42     28
                   vv
clus                CLUS_9
  HIST4H4 MUTATED        0
  HIST4H4 WILD-TYPE     74
D1872V10, multiclass
        clus
vv       HIST4H4 MUTATED HIST4H4 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               0                69
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST4H4 MUTATED        0      0      0      0
  HIST4H4 WILD-TYPE     33     31     27     19
D1872V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST4H4 MUTATED        0      0      0      0
  HIST4H4 WILD-TYPE     54     10     24     22
D1872V12, multiclass

Clustering(1873) Variable = ASTE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASTE1 MUTATED        1      0      0      4
  ASTE1 WILD-TYPE     45     58     64     39
D1873V1, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASTE1 MUTATED        3      0      2
  ASTE1 WILD-TYPE     48     83     75
D1873V2, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASTE1 MUTATED        8      1      0      1
  ASTE1 WILD-TYPE    170    182    101     19
D1873V3, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASTE1 MUTATED        1      1      3
  ASTE1 WILD-TYPE     86     79     97
D1873V4, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASTE1 MUTATED        2      4      2
  ASTE1 WILD-TYPE     87    156    136
D1873V5, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASTE1 MUTATED        3      3      2
  ASTE1 WILD-TYPE    179    130     70
D1873V6, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASTE1 MUTATED        1      2      2      5
  ASTE1 WILD-TYPE    111     94     90    181
D1873V7, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ASTE1 MUTATED        1      1      3      1      0      0      4
  ASTE1 WILD-TYPE     59     49     46     39     63    125     95
D1873V8, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASTE1 MUTATED        4      1      0      5
  ASTE1 WILD-TYPE    126     77     68    191
D1873V9, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ASTE1 MUTATED        1      2      1      0      5      1      0      0
  ASTE1 WILD-TYPE     39     60     27     80     64     47     43     28
                 vv
clus              CLUS_9
  ASTE1 MUTATED        0
  ASTE1 WILD-TYPE     74
D1873V10, multiclass
        clus
vv       ASTE1 MUTATED ASTE1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASTE1 MUTATED        0      0      0      2
  ASTE1 WILD-TYPE     33     31     27     17
D1873V11, multiclass
[1] "Remove cluster labels:" "ASTE1 MUTATED"         
clus
  ASTE1 MUTATED ASTE1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASTE1 MUTATED        1      0      1      0
  ASTE1 WILD-TYPE     53     10     23     22
D1873V12, multiclass
[1] "Remove cluster labels:" "ASTE1 MUTATED"         
clus
  ASTE1 MUTATED ASTE1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" "ASTE1 WILD-TYPE" 

Clustering(1874) Variable = FBXO38 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO38 MUTATED        2      1      0      1
  FBXO38 WILD-TYPE     44     57     64     42
D1874V1, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO38 MUTATED        3      0      1
  FBXO38 WILD-TYPE     48     83     76
D1874V2, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO38 MUTATED       12      3      2      1
  FBXO38 WILD-TYPE    166    180     99     19
D1874V3, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              3              180
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO38 MUTATED        7      1      6
  FBXO38 WILD-TYPE     80     79     94
D1874V4, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO38 MUTATED        1      3      9
  FBXO38 WILD-TYPE     88    157    129
D1874V5, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO38 MUTATED        8      3      2
  FBXO38 WILD-TYPE    174    130     70
D1874V6, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO38 MUTATED        2      5      7      4
  FBXO38 WILD-TYPE    110     91     85    182
D1874V7, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              7               85
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXO38 MUTATED        1      2      8      1      2      0      4
  FBXO38 WILD-TYPE     59     48     41     39     61    125     95
D1874V8, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              8               41
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO38 MUTATED        7      5      0      5
  FBXO38 WILD-TYPE    123     73     68    191
D1874V9, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXO38 MUTATED        2      5      1      1      5      1      1      0
  FBXO38 WILD-TYPE     38     57     27     79     64     47     42     28
                  vv
clus               CLUS_9
  FBXO38 MUTATED        1
  FBXO38 WILD-TYPE     73
D1874V10, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO38 MUTATED        3      0      0      3
  FBXO38 WILD-TYPE     30     31     27     16
D1874V11, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO38 MUTATED        5      0      0      1
  FBXO38 WILD-TYPE     49     10     24     21
D1874V12, multiclass
        clus
vv       FBXO38 MUTATED FBXO38 WILD-TYPE
  CLUS_1              5               49
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1875) Variable = HAP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAP1 MUTATED        1      1      0      1
  HAP1 WILD-TYPE     45     57     64     42
D1875V1, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAP1 MUTATED        2      1      0
  HAP1 WILD-TYPE     49     82     77
D1875V2, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAP1 MUTATED        7      1      0      0
  HAP1 WILD-TYPE    171    182    101     20
D1875V3, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAP1 MUTATED        1      0      3
  HAP1 WILD-TYPE     86     80     97
D1875V4, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAP1 MUTATED        0      5      3
  HAP1 WILD-TYPE     89    155    135
D1875V5, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAP1 MUTATED        4      3      1
  HAP1 WILD-TYPE    178    130     71
D1875V6, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAP1 MUTATED        1      2      2      3
  HAP1 WILD-TYPE    111     94     90    183
D1875V7, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HAP1 MUTATED        1      1      2      1      0      1      2
  HAP1 WILD-TYPE     59     49     47     39     63    124     97
D1875V8, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAP1 MUTATED        4      1      0      2
  HAP1 WILD-TYPE    126     77     68    194
D1875V9, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HAP1 MUTATED        0      2      0      3      1      1      0      0      0
  HAP1 WILD-TYPE     40     60     28     77     68     47     43     28     74
D1875V10, multiclass
        clus
vv       HAP1 MUTATED HAP1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAP1 MUTATED        1      0      0      1
  HAP1 WILD-TYPE     32     31     27     18
D1875V11, multiclass
[1] "Remove cluster labels:" "HAP1 MUTATED"          
clus
  HAP1 MUTATED HAP1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAP1 MUTATED        2      0      0      0
  HAP1 WILD-TYPE     52     10     24     22
D1875V12, multiclass
[1] "Remove cluster labels:" "HAP1 MUTATED"          
clus
  HAP1 MUTATED HAP1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" "HAP1 WILD-TYPE" 

Clustering(1876) Variable = TRAF3IP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP1 MUTATED        0      0      1      1
  TRAF3IP1 WILD-TYPE     46     58     63     42
D1876V1, multiclass
[1] "Remove cluster labels:" "TRAF3IP1 MUTATED"      
clus
  TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A017         TCGA-AA-A01D 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3609         TCGA-AG-3611 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP1 MUTATED        0      2      0
  TRAF3IP1 WILD-TYPE     51     81     77
D1876V2, multiclass
[1] "Remove cluster labels:" "TRAF3IP1 MUTATED"      
clus
  TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A017         TCGA-AA-A01D 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3609         TCGA-AG-3611 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP1 MUTATED        5      2      0      0
  TRAF3IP1 WILD-TYPE    173    181    101     20
D1876V3, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                5                173
  CLUS_2                2                181
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP1 MUTATED        4      0      1
  TRAF3IP1 WILD-TYPE     83     80     99
D1876V4, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP1 MUTATED        0      1      4
  TRAF3IP1 WILD-TYPE     89    159    134
D1876V5, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                1                159
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TRAF3IP1 MUTATED        4      1      0
  TRAF3IP1 WILD-TYPE    178    132     72
D1876V6, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                1                132
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP1 MUTATED        0      2      3      2
  TRAF3IP1 WILD-TYPE    112     94     89    184
D1876V7, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                3                 89
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRAF3IP1 MUTATED        0      1      3      0      1      1      1
  TRAF3IP1 WILD-TYPE     60     49     46     40     62    124     98
D1876V8, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP1 MUTATED        1      4      0      2
  TRAF3IP1 WILD-TYPE    129     74     68    194
D1876V9, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                4                 74
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRAF3IP1 MUTATED        0      4      1      1      0      0      0      0
  TRAF3IP1 WILD-TYPE     40     58     27     79     69     48     43     28
                    vv
clus                 CLUS_9
  TRAF3IP1 MUTATED        1
  TRAF3IP1 WILD-TYPE     73
D1876V10, multiclass
        clus
vv       TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 58
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                0                 69
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP1 MUTATED        2      0      0      0
  TRAF3IP1 WILD-TYPE     31     31     27     19
D1876V11, multiclass
[1] "Remove cluster labels:" "TRAF3IP1 MUTATED"      
clus
  TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6965 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-4110         TCGA-AF-6655 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3731         TCGA-AG-3732 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AY-6196         TCGA-AZ-4323 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-5403         TCGA-AZ-6598 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3IP1 MUTATED        2      0      0      0
  TRAF3IP1 WILD-TYPE     52     10     24     22
D1876V12, multiclass
[1] "Remove cluster labels:" "TRAF3IP1 MUTATED"      
clus
  TRAF3IP1 MUTATED TRAF3IP1 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-A6-6782         TCGA-AA-3489         TCGA-AA-3511 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AD-5900         TCGA-AD-6548         TCGA-AD-6889 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6965 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-4110         TCGA-AF-6655 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3731         TCGA-AG-3732 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AY-6196         TCGA-AZ-4323 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-5403         TCGA-AZ-6598 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6607         TCGA-CA-6718 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6624         TCGA-CK-5916 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CL-5918         TCGA-CM-5860 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6674         TCGA-CM-6676 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" "TRAF3IP1 WILD-TYPE" 

Clustering(1877) Variable = ZNF318 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF318 MUTATED        4      0      1      6
  ZNF318 WILD-TYPE     42     58     63     37
D1877V1, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              6               37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF318 MUTATED        9      0      2
  ZNF318 WILD-TYPE     42     83     75
D1877V2, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              9               42
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF318 MUTATED       23      4      2      0
  ZNF318 WILD-TYPE    155    179     99     20
D1877V3, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1             23              155
  CLUS_2              4              179
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF318 MUTATED        9      3      6
  ZNF318 WILD-TYPE     78     77     94
D1877V4, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              9               78
  CLUS_2              3               77
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF318 MUTATED        4      6     15
  ZNF318 WILD-TYPE     85    154    123
D1877V5, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              6              154
  CLUS_3             15              123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF318 MUTATED       14      7      4
  ZNF318 WILD-TYPE    168    126     68
D1877V6, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1             14              168
  CLUS_2              7              126
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF318 MUTATED        3      8      8     11
  ZNF318 WILD-TYPE    109     88     84    175
D1877V7, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              8               88
  CLUS_3              8               84
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF318 MUTATED        2      3      7      0      6      0     12
  ZNF318 WILD-TYPE     58     47     42     40     57    125     87
D1877V8, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              6               57
  CLUS_6              0              125
  CLUS_7             12               87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF318 MUTATED        6      5      2     16
  ZNF318 WILD-TYPE    124     73     66    180
D1877V9, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4             16              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF318 MUTATED        1      5      1      3     14      1      2      0
  ZNF318 WILD-TYPE     39     57     27     77     55     47     41     28
                  vv
clus               CLUS_9
  ZNF318 MUTATED        2
  ZNF318 WILD-TYPE     72
D1877V10, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5             14               55
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF318 MUTATED        3      1      0      2
  ZNF318 WILD-TYPE     30     30     27     17
D1877V11, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF318 MUTATED        4      0      1      1
  ZNF318 WILD-TYPE     50     10     23     21
D1877V12, multiclass
        clus
vv       ZNF318 MUTATED ZNF318 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1878) Variable = NUP133 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP133 MUTATED        2      0      0      4
  NUP133 WILD-TYPE     44     58     64     39
D1878V1, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP133 MUTATED        2      1      3
  NUP133 WILD-TYPE     49     82     74
D1878V2, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP133 MUTATED       16      1      1      1
  NUP133 WILD-TYPE    162    182    100     19
D1878V3, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1             16              162
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP133 MUTATED        5      1      6
  NUP133 WILD-TYPE     82     79     94
D1878V4, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP133 MUTATED        2      8      6
  NUP133 WILD-TYPE     87    152    132
D1878V5, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              8              152
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP133 MUTATED        8      7      1
  NUP133 WILD-TYPE    174    126     71
D1878V6, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP133 MUTATED        1      6      4      8
  NUP133 WILD-TYPE    111     90     88    178
D1878V7, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              4               88
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP133 MUTATED        2      2      5      1      1      1      7
  NUP133 WILD-TYPE     58     48     44     39     62    124     92
D1878V8, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP133 MUTATED        4      3      2     10
  NUP133 WILD-TYPE    126     75     66    186
D1878V9, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP133 MUTATED        4      3      2      1      3      0      2      1
  NUP133 WILD-TYPE     36     59     26     79     66     48     41     27
                  vv
clus               CLUS_9
  NUP133 MUTATED        3
  NUP133 WILD-TYPE     71
D1878V10, multiclass
        clus
vv       NUP133 MUTATED NUP133 WILD-TYPE
  CLUS_1              4               36
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP133 MUTATED        2      0      0      0
  NUP133 WILD-TYPE     31     31     27     19
D1878V11, multiclass
[1] "Remove cluster labels:" "NUP133 MUTATED"        
clus
  NUP133 MUTATED NUP133 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP133 MUTATED        2      0      0      0
  NUP133 WILD-TYPE     52     10     24     22
D1878V12, multiclass
[1] "Remove cluster labels:" "NUP133 MUTATED"        
clus
  NUP133 MUTATED NUP133 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" "NUP133 WILD-TYPE" 

Clustering(1879) Variable = ARAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        1      0      0      2
  ARAF WILD-TYPE     45     58     64     41
D1879V1, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARAF MUTATED        3      0      0
  ARAF WILD-TYPE     48     83     77
D1879V2, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED       10      0      0      0
  ARAF WILD-TYPE    168    183    101     20
D1879V3, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1           10            168
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARAF MUTATED        4      0      3
  ARAF WILD-TYPE     83     80     97
D1879V4, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARAF MUTATED        3      0      5
  ARAF WILD-TYPE     86    160    133
D1879V5, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            3             86
  CLUS_2            0            160
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARAF MUTATED        5      0      3
  ARAF WILD-TYPE    177    133     69
D1879V6, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            5            177
  CLUS_2            0            133
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        1      2      4      3
  ARAF WILD-TYPE    111     94     88    183
D1879V7, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARAF MUTATED        1      0      5      0      1      0      3
  ARAF WILD-TYPE     59     50     44     40     62    125     96
D1879V8, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        2      3      1      4
  ARAF WILD-TYPE    128     75     67    192
D1879V9, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ARAF MUTATED        0      3      1      1      4      0      1      0      0
  ARAF WILD-TYPE     40     59     27     79     65     48     42     28     74
D1879V10, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        2      1      0      2
  ARAF WILD-TYPE     31     30     27     17
D1879V11, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        5      0      0      0
  ARAF WILD-TYPE     49     10     24     22
D1879V12, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            5             49
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1880) Variable = MXRA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MXRA5 MUTATED        3      2      0      6
  MXRA5 WILD-TYPE     43     56     64     37
D1880V1, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              56
  CLUS_3             0              64
  CLUS_4             6              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MXRA5 MUTATED        4      3      4
  MXRA5 WILD-TYPE     47     80     73
D1880V2, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             3              80
  CLUS_3             4              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MXRA5 MUTATED       32     10      4      0
  MXRA5 WILD-TYPE    146    173     97     20
D1880V3, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1            32             146
  CLUS_2            10             173
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MXRA5 MUTATED        7      8     18
  MXRA5 WILD-TYPE     80     72     82
D1880V4, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             8              72
  CLUS_3            18              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MXRA5 MUTATED        9     16     17
  MXRA5 WILD-TYPE     80    144    121
D1880V5, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             9              80
  CLUS_2            16             144
  CLUS_3            17             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MXRA5 MUTATED       23     16      3
  MXRA5 WILD-TYPE    159    117     69
D1880V6, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1            23             159
  CLUS_2            16             117
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MXRA5 MUTATED        6     18     11     11
  MXRA5 WILD-TYPE    106     78     81    175
D1880V7, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             6             106
  CLUS_2            18              78
  CLUS_3            11              81
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MXRA5 MUTATED        4      7     14      4      5      2     10
  MXRA5 WILD-TYPE     56     43     35     36     58    123     89
D1880V8, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             7              43
  CLUS_3            14              35
  CLUS_4             4              36
  CLUS_5             5              58
  CLUS_6             2             123
  CLUS_7            10              89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MXRA5 MUTATED       18      7      4     14
  MXRA5 WILD-TYPE    112     71     64    182
D1880V9, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1            18             112
  CLUS_2             7              71
  CLUS_3             4              64
  CLUS_4            14             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MXRA5 MUTATED        4      7      2      4     10      4      7      2
  MXRA5 WILD-TYPE     36     55     26     76     59     44     36     26
                 vv
clus              CLUS_9
  MXRA5 MUTATED        3
  MXRA5 WILD-TYPE     71
D1880V10, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             4              36
  CLUS_2             7              55
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5            10              59
  CLUS_6             4              44
  CLUS_7             7              36
  CLUS_8             2              26
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MXRA5 MUTATED        3      2      2      6
  MXRA5 WILD-TYPE     30     29     25     13
D1880V11, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              29
  CLUS_3             2              25
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MXRA5 MUTATED        7      2      2      2
  MXRA5 WILD-TYPE     47      8     22     20
D1880V12, multiclass
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  CLUS_1             7              47
  CLUS_2             2               8
  CLUS_3             2              22
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1881) Variable = PAX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        1      0      0      2
  PAX2 WILD-TYPE     45     58     64     41
D1881V1, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        1      0      2
  PAX2 WILD-TYPE     50     83     75
D1881V2, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        5      0      2      0
  PAX2 WILD-TYPE    173    183     99     20
D1881V3, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        0      0      4
  PAX2 WILD-TYPE     87     80     96
D1881V4, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        0      3      3
  PAX2 WILD-TYPE     89    157    135
D1881V5, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        2      4      0
  PAX2 WILD-TYPE    180    129     72
D1881V6, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        0      5      0      2
  PAX2 WILD-TYPE    112     91     92    184
D1881V7, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            5             91
  CLUS_3            0             92
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PAX2 MUTATED        1      0      4      1      0      0      1
  PAX2 WILD-TYPE     59     50     45     39     63    125     98
D1881V8, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        4      0      1      2
  PAX2 WILD-TYPE    126     78     67    194
D1881V9, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PAX2 MUTATED        1      1      0      0      5      0      0      0      0
  PAX2 WILD-TYPE     39     61     28     80     64     48     43     28     74
D1881V10, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        0      0      0      0
  PAX2 WILD-TYPE     33     31     27     19
D1881V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        0      0      0      0
  PAX2 WILD-TYPE     54     10     24     22
D1881V12, multiclass

Clustering(1882) Variable = FZD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        4      0      0      5
  FZD3 WILD-TYPE     42     58     64     38
D1882V1, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        6      2      1
  FZD3 WILD-TYPE     45     81     76
D1882V2, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED       13      0      1      0
  FZD3 WILD-TYPE    165    183    100     20
D1882V3, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        3      0      1
  FZD3 WILD-TYPE     84     80     99
D1882V4, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        2      5      4
  FZD3 WILD-TYPE     87    155    134
D1882V5, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        5      5      1
  FZD3 WILD-TYPE    177    128     71
D1882V6, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        0      1      3     10
  FZD3 WILD-TYPE    112     95     89    176
D1882V7, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FZD3 MUTATED        1      0      2      0      2      1      8
  FZD3 WILD-TYPE     59     50     47     40     61    124     91
D1882V8, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            8             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        2      2      0      7
  FZD3 WILD-TYPE    128     76     68    189
D1882V9, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  FZD3 MUTATED        1      2      1      1      6      0      0      0      0
  FZD3 WILD-TYPE     39     60     27     79     63     48     43     28     74
D1882V10, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        0      0      0      1
  FZD3 WILD-TYPE     33     31     27     18
D1882V11, multiclass
[1] "Remove cluster labels:" "FZD3 MUTATED"          
clus
  FZD3 MUTATED FZD3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-G5-6641 
"FZD3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        0      0      1      0
  FZD3 WILD-TYPE     54     10     23     22
D1882V12, multiclass
[1] "Remove cluster labels:" "FZD3 MUTATED"          
clus
  FZD3 MUTATED FZD3 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-G5-6641 
"FZD3 WILD-TYPE" 

Clustering(1883) Variable = LRRFIP2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        3      0      0      5
  LRRFIP2 WILD-TYPE     43     58     64     38
D1883V1, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRFIP2 MUTATED        4      1      3
  LRRFIP2 WILD-TYPE     47     82     74
D1883V2, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED       12      3      0      0
  LRRFIP2 WILD-TYPE    166    180    101     20
D1883V3, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1              12               166
  CLUS_2               3               180
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRFIP2 MUTATED        2      1      5
  LRRFIP2 WILD-TYPE     85     79     95
D1883V4, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRFIP2 MUTATED        3      5      6
  LRRFIP2 WILD-TYPE     86    155    132
D1883V5, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               5               155
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRFIP2 MUTATED        9      3      2
  LRRFIP2 WILD-TYPE    173    130     70
D1883V6, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        1      3      5      7
  LRRFIP2 WILD-TYPE    111     93     87    179
D1883V7, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               5                87
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRFIP2 MUTATED        2      1      5      0      1      0      7
  LRRFIP2 WILD-TYPE     58     49     44     40     62    125     92
D1883V8, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               7                92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        4      3      0      9
  LRRFIP2 WILD-TYPE    126     75     68    187
D1883V9, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRFIP2 MUTATED        1      3      4      0      8      0      0      0
  LRRFIP2 WILD-TYPE     39     59     24     80     61     48     43     28
                   vv
clus                CLUS_9
  LRRFIP2 MUTATED        0
  LRRFIP2 WILD-TYPE     74
D1883V10, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               4                24
  CLUS_4               0                80
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        0      0      1      3
  LRRFIP2 WILD-TYPE     33     31     26     16
D1883V11, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        3      0      1      0
  LRRFIP2 WILD-TYPE     51     10     23     22
D1883V12, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1884) Variable = SEZ6L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L MUTATED        4      1      1      3
  SEZ6L WILD-TYPE     42     57     63     40
D1884V1, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEZ6L MUTATED        4      2      3
  SEZ6L WILD-TYPE     47     81     74
D1884V2, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L MUTATED       14      4      1      1
  SEZ6L WILD-TYPE    164    179    100     19
D1884V3, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1            14             164
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEZ6L MUTATED        3      2      6
  SEZ6L WILD-TYPE     84     78     94
D1884V4, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEZ6L MUTATED        6      5      4
  SEZ6L WILD-TYPE     83    155    134
D1884V5, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             6              83
  CLUS_2             5             155
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEZ6L MUTATED        7      4      4
  SEZ6L WILD-TYPE    175    129     68
D1884V6, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L MUTATED        4      4      4      8
  SEZ6L WILD-TYPE    108     92     88    178
D1884V7, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEZ6L MUTATED        2      3      4      1      1      4      5
  SEZ6L WILD-TYPE     58     47     45     39     62    121     94
D1884V8, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             4             121
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L MUTATED        8      2      1      8
  SEZ6L WILD-TYPE    122     76     67    188
D1884V9, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             8             122
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SEZ6L MUTATED        3      3      2      2      6      1      0      0
  SEZ6L WILD-TYPE     37     59     26     78     63     47     43     28
                 vv
clus              CLUS_9
  SEZ6L MUTATED        2
  SEZ6L WILD-TYPE     72
D1884V10, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L MUTATED        2      0      0      2
  SEZ6L WILD-TYPE     31     31     27     17
D1884V11, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L MUTATED        3      0      1      0
  SEZ6L WILD-TYPE     51     10     23     22
D1884V12, multiclass
        clus
vv       SEZ6L MUTATED SEZ6L WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1885) Variable = ENTHD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTHD1 MUTATED        1      0      0      1
  ENTHD1 WILD-TYPE     45     58     64     42
D1885V1, multiclass
[1] "Remove cluster labels:" "ENTHD1 MUTATED"        
clus
  ENTHD1 MUTATED ENTHD1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AY-4071 
"ENTHD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTHD1 MUTATED        0      1      1
  ENTHD1 WILD-TYPE     51     82     76
D1885V2, multiclass
[1] "Remove cluster labels:" "ENTHD1 MUTATED"        
clus
  ENTHD1 MUTATED ENTHD1 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AY-4071 
"ENTHD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTHD1 MUTATED        9      1      1      0
  ENTHD1 WILD-TYPE    169    182    100     20
D1885V3, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTHD1 MUTATED        6      0      3
  ENTHD1 WILD-TYPE     81     80     97
D1885V4, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTHD1 MUTATED        2      3      5
  ENTHD1 WILD-TYPE     87    157    133
D1885V5, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTHD1 MUTATED        6      2      2
  ENTHD1 WILD-TYPE    176    131     70
D1885V6, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTHD1 MUTATED        1      4      4      2
  ENTHD1 WILD-TYPE    111     92     88    184
D1885V7, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ENTHD1 MUTATED        1      2      4      0      3      1      0
  ENTHD1 WILD-TYPE     59     48     45     40     60    124     99
D1885V8, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTHD1 MUTATED        4      2      1      4
  ENTHD1 WILD-TYPE    126     76     67    192
D1885V9, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ENTHD1 MUTATED        1      5      0      2      2      0      0      0
  ENTHD1 WILD-TYPE     39     57     28     78     67     48     43     28
                  vv
clus               CLUS_9
  ENTHD1 MUTATED        1
  ENTHD1 WILD-TYPE     73
D1885V10, multiclass
        clus
vv       ENTHD1 MUTATED ENTHD1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              5               57
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTHD1 MUTATED        0      0      0      1
  ENTHD1 WILD-TYPE     33     31     27     18
D1885V11, multiclass
[1] "Remove cluster labels:" "ENTHD1 MUTATED"        
clus
  ENTHD1 MUTATED ENTHD1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-G5-6641 
"ENTHD1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTHD1 MUTATED        1      0      0      0
  ENTHD1 WILD-TYPE     53     10     24     22
D1885V12, multiclass
[1] "Remove cluster labels:" "ENTHD1 MUTATED"        
clus
  ENTHD1 MUTATED ENTHD1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" "ENTHD1 WILD-TYPE" 
      TCGA-G5-6641 
"ENTHD1 WILD-TYPE" 

Clustering(1886) Variable = NEDD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD9 MUTATED        3      0      0      3
  NEDD9 WILD-TYPE     43     58     64     40
D1886V1, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NEDD9 MUTATED        4      1      1
  NEDD9 WILD-TYPE     47     82     76
D1886V2, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD9 MUTATED       12      0      1      0
  NEDD9 WILD-TYPE    166    183    100     20
D1886V3, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NEDD9 MUTATED        2      0      5
  NEDD9 WILD-TYPE     85     80     95
D1886V4, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NEDD9 MUTATED        1      4      5
  NEDD9 WILD-TYPE     88    156    133
D1886V5, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NEDD9 MUTATED        4      5      1
  NEDD9 WILD-TYPE    178    128     71
D1886V6, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD9 MUTATED        0      4      3      6
  NEDD9 WILD-TYPE    112     92     89    180
D1886V7, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NEDD9 MUTATED        1      1      5      0      1      0      5
  NEDD9 WILD-TYPE     59     49     44     40     62    125     94
D1886V8, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD9 MUTATED        3      1      0      9
  NEDD9 WILD-TYPE    127     77     68    187
D1886V9, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NEDD9 MUTATED        1      1      2      0      5      0      1      2
  NEDD9 WILD-TYPE     39     61     26     80     64     48     42     26
                 vv
clus              CLUS_9
  NEDD9 MUTATED        1
  NEDD9 WILD-TYPE     73
D1886V10, multiclass
        clus
vv       NEDD9 MUTATED NEDD9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD9 MUTATED        0      1      0      0
  NEDD9 WILD-TYPE     33     30     27     19
D1886V11, multiclass
[1] "Remove cluster labels:" "NEDD9 MUTATED"         
clus
  NEDD9 MUTATED NEDD9 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-G5-6641 
"NEDD9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD9 MUTATED        1      0      0      0
  NEDD9 WILD-TYPE     53     10     24     22
D1886V12, multiclass
[1] "Remove cluster labels:" "NEDD9 MUTATED"         
clus
  NEDD9 MUTATED NEDD9 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" "NEDD9 WILD-TYPE" 
     TCGA-G5-6641 
"NEDD9 WILD-TYPE" 

Clustering(1887) Variable = GDF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF6 MUTATED        3      0      0      0
  GDF6 WILD-TYPE     43     58     64     43
D1887V1, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDF6 MUTATED        1      2      0
  GDF6 WILD-TYPE     50     81     77
D1887V2, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF6 MUTATED        3      3      1      0
  GDF6 WILD-TYPE    175    180    100     20
D1887V3, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDF6 MUTATED        1      0      3
  GDF6 WILD-TYPE     86     80     97
D1887V4, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDF6 MUTATED        1      2      2
  GDF6 WILD-TYPE     88    158    136
D1887V5, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDF6 MUTATED        2      2      1
  GDF6 WILD-TYPE    180    131     71
D1887V6, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF6 MUTATED        1      3      0      3
  GDF6 WILD-TYPE    111     93     92    183
D1887V7, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            0             92
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GDF6 MUTATED        0      3      1      0      0      2      1
  GDF6 WILD-TYPE     60     47     48     40     63    123     98
D1887V8, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF6 MUTATED        3      0      0      4
  GDF6 WILD-TYPE    127     78     68    192
D1887V9, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GDF6 MUTATED        0      0      1      2      2      0      0      1      1
  GDF6 WILD-TYPE     40     62     27     78     67     48     43     27     73
D1887V10, multiclass
        clus
vv       GDF6 MUTATED GDF6 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF6 MUTATED        0      0      1      1
  GDF6 WILD-TYPE     33     31     26     18
D1887V11, multiclass
[1] "Remove cluster labels:" "GDF6 MUTATED"          
clus
  GDF6 MUTATED GDF6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DY-A1DC 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF6 MUTATED        0      0      2      0
  GDF6 WILD-TYPE     54     10     22     22
D1887V12, multiclass
[1] "Remove cluster labels:" "GDF6 MUTATED"          
clus
  GDF6 MUTATED GDF6 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DY-A1DC 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" "GDF6 WILD-TYPE" 

Clustering(1888) Variable = ZNF259 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF259 MUTATED        1      0      0      1
  ZNF259 WILD-TYPE     45     58     64     42
D1888V1, multiclass
[1] "Remove cluster labels:" "ZNF259 MUTATED"        
clus
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF259 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF259 MUTATED        0      1      1
  ZNF259 WILD-TYPE     51     82     76
D1888V2, multiclass
[1] "Remove cluster labels:" "ZNF259 MUTATED"        
clus
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF259 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF259 MUTATED        3      0      0      0
  ZNF259 WILD-TYPE    175    183    101     20
D1888V3, multiclass
        clus
vv       ZNF259 MUTATED ZNF259 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF259 MUTATED        0      0      1
  ZNF259 WILD-TYPE     87     80     99
D1888V4, multiclass
[1] "Remove cluster labels:" "ZNF259 MUTATED"        
clus
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               1              266 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510       TCGA-AA-3511 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662       TCGA-AA-3663 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713       TCGA-AD-5900 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889       TCGA-AD-6890 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901       TCGA-AD-6963 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742       TCGA-AG-A01W 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A28H       TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6317       TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6588       TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G5-6235       TCGA-G5-6641 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF259 MUTATED        1      1      0
  ZNF259 WILD-TYPE     88    159    138
D1888V5, multiclass
[1] "Remove cluster labels:" "ZNF259 MUTATED"        
clus
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655       TCGA-AA-3664 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681       TCGA-AA-3688 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697       TCGA-AA-3710 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715       TCGA-AA-3811 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848       TCGA-AA-3850 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856       TCGA-AA-3861 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869       TCGA-AA-3872 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3955 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900       TCGA-AD-6548 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965       TCGA-AF-2689 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654       TCGA-AF-6136 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574       TCGA-AG-3578 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731       TCGA-AG-3742 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3885 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-6004 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4682 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6621 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918       TCGA-CM-4743 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF259 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF259 MUTATED        0      1      1
  ZNF259 WILD-TYPE    182    132     71
D1888V6, multiclass
[1] "Remove cluster labels:" "ZNF259 MUTATED"        
clus
  ZNF259 MUTATED ZNF259 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6138       TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3489       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655       TCGA-AA-3664 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681       TCGA-AA-3688 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697       TCGA-AA-3710 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715       TCGA-AA-3811 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848       TCGA-AA-3850 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856       TCGA-AA-3861 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869       TCGA-AA-3872 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3955 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900       TCGA-AD-6548 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965       TCGA-AF-2689 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654       TCGA-AF-6136 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574       TCGA-AG-3578 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731       TCGA-AG-3742 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3885 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-6004 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4682 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6621 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746       TCGA-CK-6747 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918       TCGA-CM-4743 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674       TCGA-CM-6675 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" "ZNF259 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF259 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF259 MUTATED        0      1      0      2
  ZNF259 WILD-TYPE    112     95     92    184
D1888V7, multiclass
        clus
vv       ZNF259 MUTATED ZNF259 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF259 MUTATED        1      0      1      0      0      1      0
  ZNF259 WILD-TYPE     59     50     48     40     63    124     99
D1888V8, multiclass
        clus
vv       ZNF259 MUTATED ZNF259 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF259 MUTATED        0      0      0      3
  ZNF259 WILD-TYPE    130     78     68    193
D1888V9, multiclass
        clus
vv       ZNF259 MUTATED ZNF259 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF259 MUTATED        0      0      0      1      2      0      0      0
  ZNF259 WILD-TYPE     40     62     28     79     67     48     43     28
                  vv
clus               CLUS_9
  ZNF259 MUTATED        0
  ZNF259 WILD-TYPE     74
D1888V10, multiclass
        clus
vv       ZNF259 MUTATED ZNF259 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF259 MUTATED        0      0      0      0
  ZNF259 WILD-TYPE     33     31     27     19
D1888V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF259 MUTATED        0      0      0      0
  ZNF259 WILD-TYPE     54     10     24     22
D1888V12, multiclass

Clustering(1889) Variable = SRL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRL MUTATED        0      0      0      1
  SRL WILD-TYPE     46     58     64     42
D1889V1, multiclass
[1] "Remove cluster labels:" "SRL MUTATED"           
clus
  SRL MUTATED SRL WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SRL MUTATED        1      0      0
  SRL WILD-TYPE     50     83     77
D1889V2, multiclass
[1] "Remove cluster labels:" "SRL MUTATED"           
clus
  SRL MUTATED SRL WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" "SRL WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRL MUTATED        8      1      3      0
  SRL WILD-TYPE    170    182     98     20
D1889V3, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           8           170
  CLUS_2           1           182
  CLUS_3           3            98
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SRL MUTATED        3      2      6
  SRL WILD-TYPE     84     78     94
D1889V4, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           3            84
  CLUS_2           2            78
  CLUS_3           6            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SRL MUTATED        1      3      6
  SRL WILD-TYPE     88    157    132
D1889V5, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           1            88
  CLUS_2           3           157
  CLUS_3           6           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SRL MUTATED        6      3      1
  SRL WILD-TYPE    176    130     71
D1889V6, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           6           176
  CLUS_2           3           130
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRL MUTATED        2      5      3      2
  SRL WILD-TYPE    110     91     89    184
D1889V7, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           2           110
  CLUS_2           5            91
  CLUS_3           3            89
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRL MUTATED        1      2      4      0      3      1      1
  SRL WILD-TYPE     59     48     45     40     60    124     98
D1889V8, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           4            45
  CLUS_4           0            40
  CLUS_5           3            60
  CLUS_6           1           124
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRL MUTATED        5      2      2      2
  SRL WILD-TYPE    125     76     66    194
D1889V9, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           5           125
  CLUS_2           2            76
  CLUS_3           2            66
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SRL MUTATED        1      2      2      3      2      0      1      0      0
  SRL WILD-TYPE     39     60     26     77     67     48     42     28     74
D1889V10, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           2            26
  CLUS_4           3            77
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRL MUTATED        2      1      0      0
  SRL WILD-TYPE     31     30     27     19
D1889V11, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRL MUTATED        1      0      1      1
  SRL WILD-TYPE     53     10     23     21
D1889V12, multiclass
        clus
vv       SRL MUTATED SRL WILD-TYPE
  CLUS_1           1            53
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1890) Variable = G3BP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP1 MUTATED        3      0      0      3
  G3BP1 WILD-TYPE     43     58     64     40
D1890V1, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP1 MUTATED        5      0      1
  G3BP1 WILD-TYPE     46     83     76
D1890V2, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP1 MUTATED       12      0      0      0
  G3BP1 WILD-TYPE    166    183    101     20
D1890V3, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP1 MUTATED        3      0      3
  G3BP1 WILD-TYPE     84     80     97
D1890V4, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP1 MUTATED        1      3      6
  G3BP1 WILD-TYPE     88    157    132
D1890V5, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  G3BP1 MUTATED        4      3      3
  G3BP1 WILD-TYPE    178    130     69
D1890V6, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP1 MUTATED        0      3      3      6
  G3BP1 WILD-TYPE    112     93     89    180
D1890V7, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  G3BP1 MUTATED        1      1      4      0      1      0      5
  G3BP1 WILD-TYPE     59     49     45     40     62    125     94
D1890V8, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP1 MUTATED        3      2      0      6
  G3BP1 WILD-TYPE    127     76     68    190
D1890V9, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  G3BP1 MUTATED        0      2      0      0      8      0      0      0
  G3BP1 WILD-TYPE     40     60     28     80     61     48     43     28
                 vv
clus              CLUS_9
  G3BP1 MUTATED        1
  G3BP1 WILD-TYPE     73
D1890V10, multiclass
        clus
vv       G3BP1 MUTATED G3BP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP1 MUTATED        0      0      0      1
  G3BP1 WILD-TYPE     33     31     27     18
D1890V11, multiclass
[1] "Remove cluster labels:" "G3BP1 MUTATED"         
clus
  G3BP1 MUTATED G3BP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-G5-6641 
"G3BP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  G3BP1 MUTATED        0      0      1      0
  G3BP1 WILD-TYPE     54     10     23     22
D1890V12, multiclass
[1] "Remove cluster labels:" "G3BP1 MUTATED"         
clus
  G3BP1 MUTATED G3BP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" "G3BP1 WILD-TYPE" 
     TCGA-G5-6641 
"G3BP1 WILD-TYPE" 

Clustering(1891) Variable = CYP4F11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        0      1      0      1
  CYP4F11 WILD-TYPE     46     57     64     42
D1891V1, multiclass
[1] "Remove cluster labels:" "CYP4F11 MUTATED"       
clus
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AY-4071 
"CYP4F11 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        1      0      1
  CYP4F11 WILD-TYPE     50     83     76
D1891V2, multiclass
[1] "Remove cluster labels:" "CYP4F11 MUTATED"       
clus
  CYP4F11 MUTATED CYP4F11 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00O 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" "CYP4F11 WILD-TYPE" 
       TCGA-AY-4071 
"CYP4F11 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        6      0      0      1
  CYP4F11 WILD-TYPE    172    183    101     19
D1891V3, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        2      0      3
  CYP4F11 WILD-TYPE     85     80     97
D1891V4, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        2      0      4
  CYP4F11 WILD-TYPE     87    160    134
D1891V5, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               0               160
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4F11 MUTATED        4      1      1
  CYP4F11 WILD-TYPE    178    132     71
D1891V6, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        0      2      3      2
  CYP4F11 WILD-TYPE    112     94     89    184
D1891V7, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP4F11 MUTATED        0      0      4      1      0      1      1
  CYP4F11 WILD-TYPE     60     50     45     39     63    124     98
D1891V8, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        4      1      1      0
  CYP4F11 WILD-TYPE    126     77     67    196
D1891V9, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP4F11 MUTATED        2      2      0      0      1      1      0      0
  CYP4F11 WILD-TYPE     38     60     28     80     68     47     43     28
                   vv
clus                CLUS_9
  CYP4F11 MUTATED        0
  CYP4F11 WILD-TYPE     74
D1891V10, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        1      0      0      2
  CYP4F11 WILD-TYPE     32     31     27     17
D1891V11, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4F11 MUTATED        3      0      0      0
  CYP4F11 WILD-TYPE     51     10     24     22
D1891V12, multiclass
        clus
vv       CYP4F11 MUTATED CYP4F11 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1892) Variable = UBE3C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE3C MUTATED        2      0      1      4
  UBE3C WILD-TYPE     44     58     63     39
D1892V1, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBE3C MUTATED        3      1      3
  UBE3C WILD-TYPE     48     82     74
D1892V2, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE3C MUTATED       11      4      3      1
  UBE3C WILD-TYPE    167    179     98     19
D1892V3, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1            11             167
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBE3C MUTATED        6      2      4
  UBE3C WILD-TYPE     81     78     96
D1892V4, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             6              81
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBE3C MUTATED        3      5      9
  UBE3C WILD-TYPE     86    155    129
D1892V5, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBE3C MUTATED        9      6      2
  UBE3C WILD-TYPE    173    127     70
D1892V6, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             9             173
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE3C MUTATED        5      3      4      7
  UBE3C WILD-TYPE    107     93     88    179
D1892V7, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             5             107
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBE3C MUTATED        4      1      3      2      3      1      5
  UBE3C WILD-TYPE     56     49     46     38     60    124     94
D1892V8, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE3C MUTATED        6      4      1      6
  UBE3C WILD-TYPE    124     74     67    190
D1892V9, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UBE3C MUTATED        0      6      3      0      3      1      3      0
  UBE3C WILD-TYPE     40     56     25     80     66     47     40     28
                 vv
clus              CLUS_9
  UBE3C MUTATED        1
  UBE3C WILD-TYPE     73
D1892V10, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             0              40
  CLUS_2             6              56
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE3C MUTATED        1      3      1      1
  UBE3C WILD-TYPE     32     28     26     18
D1892V11, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              28
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE3C MUTATED        4      0      1      1
  UBE3C WILD-TYPE     50     10     23     21
D1892V12, multiclass
        clus
vv       UBE3C MUTATED UBE3C WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1893) Variable = LIPH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        1      0      0      2
  LIPH WILD-TYPE     45     58     64     41
D1893V1, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIPH MUTATED        1      1      1
  LIPH WILD-TYPE     50     82     76
D1893V2, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        8      2      0      0
  LIPH WILD-TYPE    170    181    101     20
D1893V3, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIPH MUTATED        2      2      3
  LIPH WILD-TYPE     85     78     97
D1893V4, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIPH MUTATED        1      3      5
  LIPH WILD-TYPE     88    157    133
D1893V5, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIPH MUTATED        2      5      2
  LIPH WILD-TYPE    180    128     70
D1893V6, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2            180
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        2      4      1      3
  LIPH WILD-TYPE    110     92     91    183
D1893V7, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LIPH MUTATED        2      2      2      1      1      0      2
  LIPH WILD-TYPE     58     48     47     39     62    125     97
D1893V8, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        3      2      1      4
  LIPH WILD-TYPE    127     76     67    192
D1893V9, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LIPH MUTATED        3      1      1      0      4      0      1      0      0
  LIPH WILD-TYPE     37     61     27     80     65     48     42     28     74
D1893V10, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            3             37
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        1      0      0      0
  LIPH WILD-TYPE     32     31     27     19
D1893V11, multiclass
[1] "Remove cluster labels:" "LIPH MUTATED"          
clus
  LIPH MUTATED LIPH WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6142 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-G5-6641 
"LIPH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        1      0      0      0
  LIPH WILD-TYPE     53     10     24     22
D1893V12, multiclass
[1] "Remove cluster labels:" "LIPH MUTATED"          
clus
  LIPH MUTATED LIPH WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6142 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653     TCGA-A6-6654 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" "LIPH WILD-TYPE" 
    TCGA-G5-6641 
"LIPH WILD-TYPE" 

Clustering(1894) Variable = GLT8D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        1      1      0      1
  GLT8D1 WILD-TYPE     45     57     64     42
D1894V1, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        0      3      0
  GLT8D1 WILD-TYPE     51     80     77
D1894V2, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        7      1      1      0
  GLT8D1 WILD-TYPE    171    182    100     20
D1894V3, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        2      0      4
  GLT8D1 WILD-TYPE     85     80     96
D1894V4, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        1      1      4
  GLT8D1 WILD-TYPE     88    159    134
D1894V5, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        2      3      1
  GLT8D1 WILD-TYPE    180    130     71
D1894V6, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        1      3      3      2
  GLT8D1 WILD-TYPE    111     93     89    184
D1894V7, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLT8D1 MUTATED        0      2      4      0      0      2      1
  GLT8D1 WILD-TYPE     60     48     45     40     63    123     98
D1894V8, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        2      2      0      5
  GLT8D1 WILD-TYPE    128     76     68    191
D1894V9, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GLT8D1 MUTATED        0      3      1      2      1      1      0      0
  GLT8D1 WILD-TYPE     40     59     27     78     68     47     43     28
                  vv
clus               CLUS_9
  GLT8D1 MUTATED        1
  GLT8D1 WILD-TYPE     73
D1894V10, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        0      0      0      1
  GLT8D1 WILD-TYPE     33     31     27     18
D1894V11, multiclass
[1] "Remove cluster labels:" "GLT8D1 MUTATED"        
clus
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-G5-6641 
"GLT8D1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        1      0      0      0
  GLT8D1 WILD-TYPE     53     10     24     22
D1894V12, multiclass
[1] "Remove cluster labels:" "GLT8D1 MUTATED"        
clus
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" "GLT8D1 WILD-TYPE" 
      TCGA-G5-6641 
"GLT8D1 WILD-TYPE" 

Clustering(1895) Variable = C20ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF43 MUTATED        0      0      0      1
  C20ORF43 WILD-TYPE     46     58     64     42
D1895V1, multiclass
[1] "Remove cluster labels:" "C20ORF43 MUTATED"      
clus
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01Q 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02W 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3608 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3611         TCGA-AG-3612 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3883 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3887         TCGA-AG-3890 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C20ORF43 MUTATED        0      0      1
  C20ORF43 WILD-TYPE     51     83     76
D1895V2, multiclass
[1] "Remove cluster labels:" "C20ORF43 MUTATED"      
clus
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01Q 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02W 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3608 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3611         TCGA-AG-3612 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3883 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3887         TCGA-AG-3890 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF43 MUTATED        3      0      0      1
  C20ORF43 WILD-TYPE    175    183    101     19
D1895V3, multiclass
        clus
vv       C20ORF43 MUTATED C20ORF43 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C20ORF43 MUTATED        2      0      1
  C20ORF43 WILD-TYPE     85     80     99
D1895V4, multiclass
        clus
vv       C20ORF43 MUTATED C20ORF43 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C20ORF43 MUTATED        1      1      0
  C20ORF43 WILD-TYPE     88    159    138
D1895V5, multiclass
[1] "Remove cluster labels:" "C20ORF43 MUTATED"      
clus
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 2                385 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AA-3514         TCGA-AA-3517 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3519         TCGA-AA-3520         TCGA-AA-3521 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3522         TCGA-AA-3525         TCGA-AA-3529 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3530         TCGA-AA-3531         TCGA-AA-3532 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3534         TCGA-AA-3548         TCGA-AA-3552 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3558         TCGA-AA-3560         TCGA-AA-3561 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3655         TCGA-AA-3664 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3678         TCGA-AA-3681 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3695         TCGA-AA-3696 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3697         TCGA-AA-3710         TCGA-AA-3712 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AA-3715         TCGA-AA-3811 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3831 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3844 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3848         TCGA-AA-3850 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3856 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3872         TCGA-AA-3930 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3950         TCGA-AA-3955 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3982 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-A004 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00Q         TCGA-AA-A00R 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01I         TCGA-AA-A01K 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01P         TCGA-AA-A01Q         TCGA-AA-A01R 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01S         TCGA-AA-A01T         TCGA-AA-A01V 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01X         TCGA-AA-A022         TCGA-AA-A024 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02K         TCGA-AA-A02O 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AD-5900         TCGA-AD-6548 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6899         TCGA-AD-6965 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-3400         TCGA-AF-3913 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-5654         TCGA-AF-6136         TCGA-AF-6655 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3574         TCGA-AG-3578 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3612         TCGA-AG-3727 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3742         TCGA-AG-3878 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3885 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01W         TCGA-AG-A01Y 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A026         TCGA-AG-A02G 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A036 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-6004 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AY-5543         TCGA-AY-6197         TCGA-AY-6386 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-4315         TCGA-AZ-4323         TCGA-AZ-4616 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-4682         TCGA-AZ-5407         TCGA-AZ-6598 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6599         TCGA-AZ-6600         TCGA-AZ-6601 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6606 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-AZ-6608         TCGA-CA-5254 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-5255         TCGA-CA-5796         TCGA-CA-5797 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-6715         TCGA-CA-6716         TCGA-CA-6717 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6621 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CK-5914         TCGA-CK-5916         TCGA-CK-6746 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CK-6747         TCGA-CK-6748         TCGA-CK-6751 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-4743         TCGA-CM-4744 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-4746         TCGA-CM-4747         TCGA-CM-4752 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5341         TCGA-CM-5344         TCGA-CM-5348 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5349         TCGA-CM-5860         TCGA-CM-5861 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5862         TCGA-CM-5863         TCGA-CM-5864 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5868         TCGA-CM-6161         TCGA-CM-6162 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6163         TCGA-CM-6164         TCGA-CM-6165 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6166         TCGA-CM-6167         TCGA-CM-6168 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6169         TCGA-CM-6170         TCGA-CM-6171 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6172         TCGA-CM-6674         TCGA-CM-6675 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5538 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6930         TCGA-D5-6931 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6932         TCGA-DC-5337         TCGA-DC-5869 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XF 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A28C 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A28E         TCGA-DM-A28F         TCGA-DM-A28G 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G5-6641 
"C20ORF43 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C20ORF43 MUTATED        1      1      0
  C20ORF43 WILD-TYPE    181    132     72
D1895V6, multiclass
[1] "Remove cluster labels:" "C20ORF43 MUTATED"      
clus
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 2                385 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AA-3514         TCGA-AA-3517 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3519         TCGA-AA-3520         TCGA-AA-3521 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3522         TCGA-AA-3525         TCGA-AA-3529 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3530         TCGA-AA-3531         TCGA-AA-3532 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3534         TCGA-AA-3548         TCGA-AA-3552 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3558         TCGA-AA-3560         TCGA-AA-3561 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3655         TCGA-AA-3664 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3678         TCGA-AA-3681 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3695         TCGA-AA-3696 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3697         TCGA-AA-3710         TCGA-AA-3712 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AA-3715         TCGA-AA-3811 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3831 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3844 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3848         TCGA-AA-3850 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3856 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3861         TCGA-AA-3864         TCGA-AA-3866 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3872         TCGA-AA-3930 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3950         TCGA-AA-3955 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3982 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-A004 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00Q         TCGA-AA-A00R 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01I         TCGA-AA-A01K 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01P         TCGA-AA-A01Q         TCGA-AA-A01R 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01S         TCGA-AA-A01T         TCGA-AA-A01V 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A01X         TCGA-AA-A022         TCGA-AA-A024 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02K         TCGA-AA-A02O 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AD-5900         TCGA-AD-6548 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6899         TCGA-AD-6965 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-3400         TCGA-AF-3913 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-5654         TCGA-AF-6136         TCGA-AF-6655 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-6672         TCGA-AG-3574         TCGA-AG-3578 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3609         TCGA-AG-3612         TCGA-AG-3727 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3742         TCGA-AG-3878 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3885 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01W         TCGA-AG-A01Y 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A026         TCGA-AG-A02G 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A036 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-6004 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AY-5543         TCGA-AY-6197         TCGA-AY-6386 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-4315         TCGA-AZ-4323         TCGA-AZ-4616 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-4682         TCGA-AZ-5407         TCGA-AZ-6598 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6599         TCGA-AZ-6600         TCGA-AZ-6601 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6606 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-AZ-6608         TCGA-CA-5254 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-5255         TCGA-CA-5796         TCGA-CA-5797 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-6715         TCGA-CA-6716         TCGA-CA-6717 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6621 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CK-5914         TCGA-CK-5916         TCGA-CK-6746 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CK-6747         TCGA-CK-6748         TCGA-CK-6751 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-4743         TCGA-CM-4744 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-4746         TCGA-CM-4747         TCGA-CM-4752 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5341         TCGA-CM-5344         TCGA-CM-5348 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5349         TCGA-CM-5860         TCGA-CM-5861 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5862         TCGA-CM-5863         TCGA-CM-5864 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5868         TCGA-CM-6161         TCGA-CM-6162 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6163         TCGA-CM-6164         TCGA-CM-6165 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6166         TCGA-CM-6167         TCGA-CM-6168 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6169         TCGA-CM-6170         TCGA-CM-6171 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6172         TCGA-CM-6674         TCGA-CM-6675 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5538 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6930         TCGA-D5-6931 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6932         TCGA-DC-5337         TCGA-DC-5869 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XF 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A28C 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A28E         TCGA-DM-A28F         TCGA-DM-A28G 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G5-6641 
"C20ORF43 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF43 MUTATED        0      1      1      2
  C20ORF43 WILD-TYPE    112     95     91    184
D1895V7, multiclass
        clus
vv       C20ORF43 MUTATED C20ORF43 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C20ORF43 MUTATED        0      0      1      1      0      0      2
  C20ORF43 WILD-TYPE     60     50     48     39     63    125     97
D1895V8, multiclass
        clus
vv       C20ORF43 MUTATED C20ORF43 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                1                 48
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                2                 97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF43 MUTATED        2      0      0      2
  C20ORF43 WILD-TYPE    128     78     68    194
D1895V9, multiclass
        clus
vv       C20ORF43 MUTATED C20ORF43 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C20ORF43 MUTATED        2      0      1      0      0      0      0      0
  C20ORF43 WILD-TYPE     38     62     27     80     69     48     43     28
                    vv
clus                 CLUS_9
  C20ORF43 MUTATED        1
  C20ORF43 WILD-TYPE     73
D1895V10, multiclass
        clus
vv       C20ORF43 MUTATED C20ORF43 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 62
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                0                 69
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF43 MUTATED        1      0      0      0
  C20ORF43 WILD-TYPE     32     31     27     19
D1895V11, multiclass
[1] "Remove cluster labels:" "C20ORF43 MUTATED"      
clus
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G5-6641 
"C20ORF43 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF43 MUTATED        1      0      0      0
  C20ORF43 WILD-TYPE     53     10     24     22
D1895V12, multiclass
[1] "Remove cluster labels:" "C20ORF43 MUTATED"      
clus
  C20ORF43 MUTATED C20ORF43 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" "C20ORF43 WILD-TYPE" 
        TCGA-G5-6641 
"C20ORF43 WILD-TYPE" 

Clustering(1896) Variable = GOLIM4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLIM4 MUTATED        3      0      0      4
  GOLIM4 WILD-TYPE     43     58     64     39
D1896V1, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLIM4 MUTATED        4      2      1
  GOLIM4 WILD-TYPE     47     81     76
D1896V2, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLIM4 MUTATED        9      2      0      0
  GOLIM4 WILD-TYPE    169    181    101     20
D1896V3, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLIM4 MUTATED        2      2      1
  GOLIM4 WILD-TYPE     85     78     99
D1896V4, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLIM4 MUTATED        2      3      5
  GOLIM4 WILD-TYPE     87    157    133
D1896V5, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLIM4 MUTATED        5      3      2
  GOLIM4 WILD-TYPE    177    130     70
D1896V6, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLIM4 MUTATED        1      1      2      7
  GOLIM4 WILD-TYPE    111     95     90    179
D1896V7, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GOLIM4 MUTATED        1      0      2      0      1      1      6
  GOLIM4 WILD-TYPE     59     50     47     40     62    124     93
D1896V8, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLIM4 MUTATED        1      1      1      7
  GOLIM4 WILD-TYPE    129     77     67    189
D1896V9, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GOLIM4 MUTATED        0      2      1      0      5      0      0      1
  GOLIM4 WILD-TYPE     40     60     27     80     64     48     43     27
                  vv
clus               CLUS_9
  GOLIM4 MUTATED        1
  GOLIM4 WILD-TYPE     73
D1896V10, multiclass
        clus
vv       GOLIM4 MUTATED GOLIM4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLIM4 MUTATED        0      0      1      1
  GOLIM4 WILD-TYPE     33     31     26     18
D1896V11, multiclass
[1] "Remove cluster labels:" "GOLIM4 MUTATED"        
clus
  GOLIM4 MUTATED GOLIM4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLIM4 MUTATED        1      1      0      0
  GOLIM4 WILD-TYPE     53      9     24     22
D1896V12, multiclass
[1] "Remove cluster labels:" "GOLIM4 MUTATED"        
clus
  GOLIM4 MUTATED GOLIM4 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" "GOLIM4 WILD-TYPE" 

Clustering(1897) Variable = MTMR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        2      0      1      2
  MTMR1 WILD-TYPE     44     58     63     41
D1897V1, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        3      0      2
  MTMR1 WILD-TYPE     48     83     75
D1897V2, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        9      1      2      1
  MTMR1 WILD-TYPE    169    182     99     19
D1897V3, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        4      1      3
  MTMR1 WILD-TYPE     83     79     97
D1897V4, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        3      2      5
  MTMR1 WILD-TYPE     86    158    133
D1897V5, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR1 MUTATED        6      2      2
  MTMR1 WILD-TYPE    176    131     70
D1897V6, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        1      2      4      6
  MTMR1 WILD-TYPE    111     94     88    180
D1897V7, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTMR1 MUTATED        1      0      4      0      2      2      4
  MTMR1 WILD-TYPE     59     50     45     40     61    123     95
D1897V8, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        4      2      0      6
  MTMR1 WILD-TYPE    126     76     68    190
D1897V9, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MTMR1 MUTATED        0      2      1      2      5      1      0      0
  MTMR1 WILD-TYPE     40     60     27     78     64     47     43     28
                 vv
clus              CLUS_9
  MTMR1 MUTATED        1
  MTMR1 WILD-TYPE     73
D1897V10, multiclass
        clus
vv       MTMR1 MUTATED MTMR1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        1      0      0      1
  MTMR1 WILD-TYPE     32     31     27     18
D1897V11, multiclass
[1] "Remove cluster labels:" "MTMR1 MUTATED"         
clus
  MTMR1 MUTATED MTMR1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR1 MUTATED        2      0      0      0
  MTMR1 WILD-TYPE     52     10     24     22
D1897V12, multiclass
[1] "Remove cluster labels:" "MTMR1 MUTATED"         
clus
  MTMR1 MUTATED MTMR1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" "MTMR1 WILD-TYPE" 

Clustering(1898) Variable = TRPM6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        3      1      1      5
  TRPM6 WILD-TYPE     43     57     63     38
D1898V1, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM6 MUTATED        6      2      2
  TRPM6 WILD-TYPE     45     81     75
D1898V2, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED       24      3      1      2
  TRPM6 WILD-TYPE    154    180    100     18
D1898V3, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1            24             154
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM6 MUTATED        7      2      9
  TRPM6 WILD-TYPE     80     78     91
D1898V4, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             2              78
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM6 MUTATED        3     11     12
  TRPM6 WILD-TYPE     86    149    126
D1898V5, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            11             149
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM6 MUTATED       13     12      1
  TRPM6 WILD-TYPE    169    121     71
D1898V6, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1            13             169
  CLUS_2            12             121
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        2     10      6     12
  TRPM6 WILD-TYPE    110     86     86    174
D1898V7, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             2             110
  CLUS_2            10              86
  CLUS_3             6              86
  CLUS_4            12             174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPM6 MUTATED        3      4      8      1      1      2     11
  TRPM6 WILD-TYPE     57     46     41     39     62    123     88
D1898V8, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7            11              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        8      4      1     15
  TRPM6 WILD-TYPE    122     74     67    181
D1898V9, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4            15             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRPM6 MUTATED        5      4      1      2     11      2      1      0
  TRPM6 WILD-TYPE     35     58     27     78     58     46     42     28
                 vv
clus              CLUS_9
  TRPM6 MUTATED        2
  TRPM6 WILD-TYPE     72
D1898V10, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5            11              58
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        2      0      1      3
  TRPM6 WILD-TYPE     31     31     26     16
D1898V11, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        4      0      2      0
  TRPM6 WILD-TYPE     50     10     22     22
D1898V12, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1899) Variable = GABRA4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA4 MUTATED        2      1      1      3
  GABRA4 WILD-TYPE     44     57     63     40
D1899V1, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA4 MUTATED        1      3      3
  GABRA4 WILD-TYPE     50     80     74
D1899V2, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              3               80
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA4 MUTATED        8      4      0      1
  GABRA4 WILD-TYPE    170    179    101     19
D1899V3, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              4              179
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA4 MUTATED        2      2      2
  GABRA4 WILD-TYPE     85     78     98
D1899V4, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA4 MUTATED        4      4      2
  GABRA4 WILD-TYPE     85    156    136
D1899V5, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              4              156
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRA4 MUTATED        3      3      4
  GABRA4 WILD-TYPE    179    130     68
D1899V6, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA4 MUTATED        2      0      4      7
  GABRA4 WILD-TYPE    110     96     88    179
D1899V7, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              0               96
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABRA4 MUTATED        1      1      3      0      2      4      2
  GABRA4 WILD-TYPE     59     49     46     40     61    121     97
D1899V8, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              4              121
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA4 MUTATED        2      3      1      7
  GABRA4 WILD-TYPE    128     75     67    189
D1899V9, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GABRA4 MUTATED        0      3      1      2      3      0      1      0
  GABRA4 WILD-TYPE     40     59     27     78     66     48     42     28
                  vv
clus               CLUS_9
  GABRA4 MUTATED        3
  GABRA4 WILD-TYPE     71
D1899V10, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA4 MUTATED        2      0      0      2
  GABRA4 WILD-TYPE     31     31     27     17
D1899V11, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRA4 MUTATED        3      0      0      1
  GABRA4 WILD-TYPE     51     10     24     21
D1899V12, multiclass
        clus
vv       GABRA4 MUTATED GABRA4 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1900) Variable = C17ORF71 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF71 MUTATED        2      0      0      4
  C17ORF71 WILD-TYPE     44     58     64     39
D1900V1, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                2                 44
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF71 MUTATED        3      1      2
  C17ORF71 WILD-TYPE     48     82     75
D1900V2, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF71 MUTATED        6      3      1      0
  C17ORF71 WILD-TYPE    172    180    100     20
D1900V3, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                3                180
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF71 MUTATED        2      1      2
  C17ORF71 WILD-TYPE     85     79     98
D1900V4, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF71 MUTATED        2      4      4
  C17ORF71 WILD-TYPE     87    156    134
D1900V5, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                4                156
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF71 MUTATED        4      4      2
  C17ORF71 WILD-TYPE    178    129     70
D1900V6, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                4                129
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF71 MUTATED        0      1      4      6
  C17ORF71 WILD-TYPE    112     95     88    180
D1900V7, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                4                 88
  CLUS_4                6                180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C17ORF71 MUTATED        1      1      0      1      3      0      5
  C17ORF71 WILD-TYPE     59     49     49     39     60    125     94
D1900V8, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                0                 49
  CLUS_4                1                 39
  CLUS_5                3                 60
  CLUS_6                0                125
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF71 MUTATED        3      2      0      5
  C17ORF71 WILD-TYPE    127     76     68    191
D1900V9, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C17ORF71 MUTATED        3      2      2      0      3      0      0      0
  C17ORF71 WILD-TYPE     37     60     26     80     66     48     43     28
                    vv
clus                 CLUS_9
  C17ORF71 MUTATED        0
  C17ORF71 WILD-TYPE     74
D1900V10, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                0                 80
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF71 MUTATED        2      1      0      0
  C17ORF71 WILD-TYPE     31     30     27     19
D1900V11, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                0                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF71 MUTATED        3      0      0      0
  C17ORF71 WILD-TYPE     51     10     24     22
D1900V12, multiclass
        clus
vv       C17ORF71 MUTATED C17ORF71 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1901) Variable = VCAN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCAN MUTATED        5      5      1      6
  VCAN WILD-TYPE     41     53     63     37
D1901V1, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            5             41
  CLUS_2            5             53
  CLUS_3            1             63
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCAN MUTATED        6      6      5
  VCAN WILD-TYPE     45     77     72
D1901V2, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            6             45
  CLUS_2            6             77
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCAN MUTATED       21     13      5      4
  VCAN WILD-TYPE    157    170     96     16
D1901V3, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1           21            157
  CLUS_2           13            170
  CLUS_3            5             96
  CLUS_4            4             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCAN MUTATED       10      6      9
  VCAN WILD-TYPE     77     74     91
D1901V4, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1           10             77
  CLUS_2            6             74
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCAN MUTATED        4     17     14
  VCAN WILD-TYPE     85    143    124
D1901V5, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            4             85
  CLUS_2           17            143
  CLUS_3           14            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VCAN MUTATED       17     15      3
  VCAN WILD-TYPE    165    118     69
D1901V6, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1           17            165
  CLUS_2           15            118
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCAN MUTATED        8      8      9     17
  VCAN WILD-TYPE    104     88     83    169
D1901V7, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            8            104
  CLUS_2            8             88
  CLUS_3            9             83
  CLUS_4           17            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VCAN MUTATED        6      5      8      3      3      7     10
  VCAN WILD-TYPE     54     45     41     37     60    118     89
D1901V8, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            6             54
  CLUS_2            5             45
  CLUS_3            8             41
  CLUS_4            3             37
  CLUS_5            3             60
  CLUS_6            7            118
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCAN MUTATED       12      4      4     21
  VCAN WILD-TYPE    118     74     64    175
D1901V9, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1           12            118
  CLUS_2            4             74
  CLUS_3            4             64
  CLUS_4           21            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  VCAN MUTATED        4      5      5      6      9      4      4      1      3
  VCAN WILD-TYPE     36     57     23     74     60     44     39     27     71
D1901V10, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            4             36
  CLUS_2            5             57
  CLUS_3            5             23
  CLUS_4            6             74
  CLUS_5            9             60
  CLUS_6            4             44
  CLUS_7            4             39
  CLUS_8            1             27
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCAN MUTATED        2      1      2      5
  VCAN WILD-TYPE     31     30     25     14
D1901V11, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            5             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VCAN MUTATED        5      1      3      1
  VCAN WILD-TYPE     49      9     21     21
D1901V12, multiclass
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  CLUS_1            5             49
  CLUS_2            1              9
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1902) Variable = CDH24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        3      0      0      2
  CDH24 WILD-TYPE     43     58     64     41
D1902V1, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH24 MUTATED        3      1      1
  CDH24 WILD-TYPE     48     82     76
D1902V2, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        9      1      2      0
  CDH24 WILD-TYPE    169    182     99     20
D1902V3, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH24 MUTATED        1      0      6
  CDH24 WILD-TYPE     86     80     94
D1902V4, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH24 MUTATED        3      4      3
  CDH24 WILD-TYPE     86    156    135
D1902V5, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH24 MUTATED        2      5      3
  CDH24 WILD-TYPE    180    128     69
D1902V6, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        0      6      1      5
  CDH24 WILD-TYPE    112     90     91    181
D1902V7, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH24 MUTATED        0      3      3      1      0      0      5
  CDH24 WILD-TYPE     60     47     46     39     63    125     94
D1902V8, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        5      1      0      6
  CDH24 WILD-TYPE    125     77     68    190
D1902V9, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDH24 MUTATED        5      1      1      0      3      1      0      1
  CDH24 WILD-TYPE     35     61     27     80     66     47     43     27
                 vv
clus              CLUS_9
  CDH24 MUTATED        0
  CDH24 WILD-TYPE     74
D1902V10, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        1      0      0      0
  CDH24 WILD-TYPE     32     31     27     19
D1902V11, multiclass
[1] "Remove cluster labels:" "CDH24 MUTATED"         
clus
  CDH24 MUTATED CDH24 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-G5-6641 
"CDH24 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        1      0      0      0
  CDH24 WILD-TYPE     53     10     24     22
D1902V12, multiclass
[1] "Remove cluster labels:" "CDH24 MUTATED"         
clus
  CDH24 MUTATED CDH24 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" "CDH24 WILD-TYPE" 
     TCGA-G5-6641 
"CDH24 WILD-TYPE" 

Clustering(1903) Variable = SMARCA1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA1 MUTATED        2      0      1      5
  SMARCA1 WILD-TYPE     44     58     63     38
D1903V1, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA1 MUTATED        3      0      5
  SMARCA1 WILD-TYPE     48     83     72
D1903V2, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               5                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA1 MUTATED       21      4      1      0
  SMARCA1 WILD-TYPE    157    179    100     20
D1903V3, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1              21               157
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA1 MUTATED        7      0      9
  SMARCA1 WILD-TYPE     80     80     91
D1903V4, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               7                80
  CLUS_2               0                80
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA1 MUTATED        4     11      6
  SMARCA1 WILD-TYPE     85    149    132
D1903V5, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               4                85
  CLUS_2              11               149
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCA1 MUTATED       11      8      2
  SMARCA1 WILD-TYPE    171    125     70
D1903V6, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               8               125
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA1 MUTATED        4      7      6      8
  SMARCA1 WILD-TYPE    108     89     86    178
D1903V7, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               7                89
  CLUS_3               6                86
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMARCA1 MUTATED        6      2      7      2      1      2      5
  SMARCA1 WILD-TYPE     54     48     42     38     62    123     94
D1903V8, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               6                54
  CLUS_2               2                48
  CLUS_3               7                42
  CLUS_4               2                38
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA1 MUTATED       10      4      2      9
  SMARCA1 WILD-TYPE    120     74     66    187
D1903V9, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1              10               120
  CLUS_2               4                74
  CLUS_3               2                66
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMARCA1 MUTATED        4      5      1      7      4      2      1      1
  SMARCA1 WILD-TYPE     36     57     27     73     65     46     42     27
                   vv
clus                CLUS_9
  SMARCA1 MUTATED        0
  SMARCA1 WILD-TYPE     74
D1903V10, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               4                36
  CLUS_2               5                57
  CLUS_3               1                27
  CLUS_4               7                73
  CLUS_5               4                65
  CLUS_6               2                46
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA1 MUTATED        2      0      3      1
  SMARCA1 WILD-TYPE     31     31     24     18
D1903V11, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               3                24
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCA1 MUTATED        3      1      1      1
  SMARCA1 WILD-TYPE     51      9     23     21
D1903V12, multiclass
        clus
vv       SMARCA1 MUTATED SMARCA1 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1904) Variable = MORC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        3      1      1      3
  MORC1 WILD-TYPE     43     57     63     40
D1904V1, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC1 MUTATED        2      4      2
  MORC1 WILD-TYPE     49     79     75
D1904V2, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             4              79
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED       11      4      3      0
  MORC1 WILD-TYPE    167    179     98     20
D1904V3, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC1 MUTATED        5      4      1
  MORC1 WILD-TYPE     82     76     99
D1904V4, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             4              76
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC1 MUTATED        1      4     10
  MORC1 WILD-TYPE     88    156    128
D1904V5, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC1 MUTATED       10      5      0
  MORC1 WILD-TYPE    172    128     72
D1904V6, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        5      2      3      8
  MORC1 WILD-TYPE    107     94     89    178
D1904V7, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MORC1 MUTATED        3      1      3      0      3      4      4
  MORC1 WILD-TYPE     57     49     46     40     60    121     95
D1904V8, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             4             121
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        3      3      0     11
  MORC1 WILD-TYPE    127     75     68    185
D1904V9, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            11             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MORC1 MUTATED        0      3      2      4      4      2      0      0
  MORC1 WILD-TYPE     40     59     26     76     65     46     43     28
                 vv
clus              CLUS_9
  MORC1 MUTATED        2
  MORC1 WILD-TYPE     72
D1904V10, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             4              65
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        1      0      0      3
  MORC1 WILD-TYPE     32     31     27     16
D1904V11, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        1      0      1      2
  MORC1 WILD-TYPE     53     10     23     20
D1904V12, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1905) Variable = ABL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        2      0      0      0
  ABL1 WILD-TYPE     44     58     64     43
D1905V1, multiclass
[1] "Remove cluster labels:" "ABL1 MUTATED"          
clus
  ABL1 MUTATED ABL1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AY-4071 
"ABL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED        2      0      0
  ABL1 WILD-TYPE     49     83     77
D1905V2, multiclass
[1] "Remove cluster labels:" "ABL1 MUTATED"          
clus
  ABL1 MUTATED ABL1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" "ABL1 WILD-TYPE" 
    TCGA-AY-4071 
"ABL1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED       17      7      2      3
  ABL1 WILD-TYPE    161    176     99     17
D1905V3, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            7            176
  CLUS_3            2             99
  CLUS_4            3             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED        6      4     16
  ABL1 WILD-TYPE     81     76     84
D1905V4, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            4             76
  CLUS_3           16             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED        7      8     10
  ABL1 WILD-TYPE     82    152    128
D1905V5, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            7             82
  CLUS_2            8            152
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED       13      8      4
  ABL1 WILD-TYPE    169    125     68
D1905V6, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1           13            169
  CLUS_2            8            125
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        8     12      7      3
  ABL1 WILD-TYPE    104     84     85    183
D1905V7, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            8            104
  CLUS_2           12             84
  CLUS_3            7             85
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABL1 MUTATED        6      2     12      4      3      0      3
  ABL1 WILD-TYPE     54     48     37     36     60    125     96
D1905V8, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            6             54
  CLUS_2            2             48
  CLUS_3           12             37
  CLUS_4            4             36
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED       17      6      1      6
  ABL1 WILD-TYPE    113     72     67    190
D1905V9, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1           17            113
  CLUS_2            6             72
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ABL1 MUTATED        6      4      1      2     12      2      3      0      0
  ABL1 WILD-TYPE     34     58     27     78     57     46     40     28     74
D1905V10, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            6             34
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5           12             57
  CLUS_6            2             46
  CLUS_7            3             40
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        2      0      0      4
  ABL1 WILD-TYPE     31     31     27     15
D1905V11, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        4      0      2      0
  ABL1 WILD-TYPE     50     10     22     22
D1905V12, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1906) Variable = TTC13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC13 MUTATED        1      0      0      3
  TTC13 WILD-TYPE     45     58     64     40
D1906V1, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC13 MUTATED        3      0      1
  TTC13 WILD-TYPE     48     83     76
D1906V2, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC13 MUTATED        8      0      0      2
  TTC13 WILD-TYPE    170    183    101     18
D1906V3, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC13 MUTATED        1      0      4
  TTC13 WILD-TYPE     86     80     96
D1906V4, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC13 MUTATED        0      6      3
  TTC13 WILD-TYPE     89    154    135
D1906V5, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             6             154
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC13 MUTATED        3      4      2
  TTC13 WILD-TYPE    179    129     70
D1906V6, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC13 MUTATED        0      4      1      5
  TTC13 WILD-TYPE    112     92     91    181
D1906V7, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTC13 MUTATED        1      1      4      0      0      0      4
  TTC13 WILD-TYPE     59     49     45     40     63    125     95
D1906V8, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC13 MUTATED        4      0      0      5
  TTC13 WILD-TYPE    126     78     68    191
D1906V9, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TTC13 MUTATED        0      1      0      1      6      0      1      0
  TTC13 WILD-TYPE     40     61     28     79     63     48     42     28
                 vv
clus              CLUS_9
  TTC13 MUTATED        0
  TTC13 WILD-TYPE     74
D1906V10, multiclass
        clus
vv       TTC13 MUTATED TTC13 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC13 MUTATED        0      0      0      1
  TTC13 WILD-TYPE     33     31     27     18
D1906V11, multiclass
[1] "Remove cluster labels:" "TTC13 MUTATED"         
clus
  TTC13 MUTATED TTC13 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-G5-6641 
"TTC13 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC13 MUTATED        1      0      0      0
  TTC13 WILD-TYPE     53     10     24     22
D1906V12, multiclass
[1] "Remove cluster labels:" "TTC13 MUTATED"         
clus
  TTC13 MUTATED TTC13 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-F5-6811      TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-G4-6306      TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235 
"TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" "TTC13 WILD-TYPE" 
     TCGA-G5-6641 
"TTC13 WILD-TYPE" 

Clustering(1907) Variable = PTPMT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPMT1 MUTATED        1      0      0      0
  PTPMT1 WILD-TYPE     45     58     64     43
D1907V1, multiclass
[1] "Remove cluster labels:" "PTPMT1 MUTATED"        
clus
  PTPMT1 MUTATED PTPMT1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPMT1 MUTATED        0      1      0
  PTPMT1 WILD-TYPE     51     82     77
D1907V2, multiclass
[1] "Remove cluster labels:" "PTPMT1 MUTATED"        
clus
  PTPMT1 MUTATED PTPMT1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3986 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"PTPMT1 WILD-TYPE" "PTPMT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPMT1 MUTATED        5      1      0      1
  PTPMT1 WILD-TYPE    173    182    101     19
D1907V3, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPMT1 MUTATED        3      0      2
  PTPMT1 WILD-TYPE     84     80     98
D1907V4, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPMT1 MUTATED        0      1      4
  PTPMT1 WILD-TYPE     89    159    134
D1907V5, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPMT1 MUTATED        4      1      0
  PTPMT1 WILD-TYPE    178    132     72
D1907V6, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPMT1 MUTATED        1      4      0      2
  PTPMT1 WILD-TYPE    111     92     92    184
D1907V7, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPMT1 MUTATED        0      0      2      2      1      1      1
  PTPMT1 WILD-TYPE     60     50     47     38     62    124     98
D1907V8, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPMT1 MUTATED        4      0      0      3
  PTPMT1 WILD-TYPE    126     78     68    193
D1907V9, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPMT1 MUTATED        0      0      0      3      3      1      0      0
  PTPMT1 WILD-TYPE     40     62     28     77     66     47     43     28
                  vv
clus               CLUS_9
  PTPMT1 MUTATED        0
  PTPMT1 WILD-TYPE     74
D1907V10, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPMT1 MUTATED        0      0      2      1
  PTPMT1 WILD-TYPE     33     31     25     18
D1907V11, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPMT1 MUTATED        0      0      2      1
  PTPMT1 WILD-TYPE     54     10     22     21
D1907V12, multiclass
        clus
vv       PTPMT1 MUTATED PTPMT1 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1908) Variable = HEXIM2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXIM2 MUTATED        1      0      0      0
  HEXIM2 WILD-TYPE     45     58     64     43
D1908V1, multiclass
[1] "Remove cluster labels:" "HEXIM2 MUTATED"        
clus
  HEXIM2 MUTATED HEXIM2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEXIM2 MUTATED        1      0      0
  HEXIM2 WILD-TYPE     50     83     77
D1908V2, multiclass
[1] "Remove cluster labels:" "HEXIM2 MUTATED"        
clus
  HEXIM2 MUTATED HEXIM2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXIM2 MUTATED        5      2      0      0
  HEXIM2 WILD-TYPE    173    181    101     20
D1908V3, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEXIM2 MUTATED        2      1      3
  HEXIM2 WILD-TYPE     85     79     97
D1908V4, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEXIM2 MUTATED        1      2      4
  HEXIM2 WILD-TYPE     88    158    134
D1908V5, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HEXIM2 MUTATED        4      3      0
  HEXIM2 WILD-TYPE    178    130     72
D1908V6, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXIM2 MUTATED        2      3      1      1
  HEXIM2 WILD-TYPE    110     93     91    185
D1908V7, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HEXIM2 MUTATED        1      1      2      0      1      0      2
  HEXIM2 WILD-TYPE     59     49     47     40     62    125     97
D1908V8, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXIM2 MUTATED        2      1      0      4
  HEXIM2 WILD-TYPE    128     77     68    192
D1908V9, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HEXIM2 MUTATED        0      0      1      0      4      0      1      0
  HEXIM2 WILD-TYPE     40     62     27     80     65     48     42     28
                  vv
clus               CLUS_9
  HEXIM2 MUTATED        1
  HEXIM2 WILD-TYPE     73
D1908V10, multiclass
        clus
vv       HEXIM2 MUTATED HEXIM2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXIM2 MUTATED        0      0      0      1
  HEXIM2 WILD-TYPE     33     31     27     18
D1908V11, multiclass
[1] "Remove cluster labels:" "HEXIM2 MUTATED"        
clus
  HEXIM2 MUTATED HEXIM2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-G5-6641 
"HEXIM2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXIM2 MUTATED        0      0      1      0
  HEXIM2 WILD-TYPE     54     10     23     22
D1908V12, multiclass
[1] "Remove cluster labels:" "HEXIM2 MUTATED"        
clus
  HEXIM2 MUTATED HEXIM2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-F4-6459       TCGA-F4-6460 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" "HEXIM2 WILD-TYPE" 
      TCGA-G5-6641 
"HEXIM2 WILD-TYPE" 

Clustering(1909) Variable = ST14 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST14 MUTATED        1      0      0      1
  ST14 WILD-TYPE     45     58     64     42
D1909V1, multiclass
[1] "Remove cluster labels:" "ST14 MUTATED"          
clus
  ST14 MUTATED ST14 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AY-4071 
"ST14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST14 MUTATED        1      0      1
  ST14 WILD-TYPE     50     83     76
D1909V2, multiclass
[1] "Remove cluster labels:" "ST14 MUTATED"          
clus
  ST14 MUTATED ST14 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" "ST14 WILD-TYPE" 
    TCGA-AY-4071 
"ST14 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST14 MUTATED        7      2      2      1
  ST14 WILD-TYPE    171    181     99     19
D1909V3, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST14 MUTATED        4      2      3
  ST14 WILD-TYPE     83     78     97
D1909V4, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST14 MUTATED        1      5      3
  ST14 WILD-TYPE     88    155    135
D1909V5, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ST14 MUTATED        3      5      1
  ST14 WILD-TYPE    179    128     71
D1909V6, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST14 MUTATED        3      5      1      3
  ST14 WILD-TYPE    109     91     91    183
D1909V7, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ST14 MUTATED        1      1      5      2      1      0      2
  ST14 WILD-TYPE     59     49     44     38     62    125     97
D1909V8, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST14 MUTATED        6      2      1      3
  ST14 WILD-TYPE    124     76     67    193
D1909V9, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ST14 MUTATED        2      3      0      1      4      0      1      1      0
  ST14 WILD-TYPE     38     59     28     79     65     48     42     27     74
D1909V10, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST14 MUTATED        2      1      0      0
  ST14 WILD-TYPE     31     30     27     19
D1909V11, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST14 MUTATED        2      0      0      1
  ST14 WILD-TYPE     52     10     24     21
D1909V12, multiclass
        clus
vv       ST14 MUTATED ST14 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1910) Variable = DPPA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPPA2 MUTATED        0      0      0      2
  DPPA2 WILD-TYPE     46     58     64     41
D1910V1, multiclass
[1] "Remove cluster labels:" "DPPA2 MUTATED"         
clus
  DPPA2 MUTATED DPPA2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AY-4071 
"DPPA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPPA2 MUTATED        1      0      1
  DPPA2 WILD-TYPE     50     83     76
D1910V2, multiclass
[1] "Remove cluster labels:" "DPPA2 MUTATED"         
clus
  DPPA2 MUTATED DPPA2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3893 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AY-4071 
"DPPA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPPA2 MUTATED        6      2      0      0
  DPPA2 WILD-TYPE    172    181    101     20
D1910V3, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPPA2 MUTATED        2      1      3
  DPPA2 WILD-TYPE     85     79     97
D1910V4, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPPA2 MUTATED        1      0      4
  DPPA2 WILD-TYPE     88    160    134
D1910V5, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DPPA2 MUTATED        5      0      0
  DPPA2 WILD-TYPE    177    133     72
D1910V6, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPPA2 MUTATED        1      2      3      2
  DPPA2 WILD-TYPE    111     94     89    184
D1910V7, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DPPA2 MUTATED        0      1      3      0      2      0      2
  DPPA2 WILD-TYPE     60     49     46     40     61    125     97
D1910V8, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPPA2 MUTATED        4      2      0      2
  DPPA2 WILD-TYPE    126     76     68    194
D1910V9, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DPPA2 MUTATED        2      3      1      0      2      0      0      0
  DPPA2 WILD-TYPE     38     59     27     80     67     48     43     28
                 vv
clus              CLUS_9
  DPPA2 MUTATED        0
  DPPA2 WILD-TYPE     74
D1910V10, multiclass
        clus
vv       DPPA2 MUTATED DPPA2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPPA2 MUTATED        0      0      0      2
  DPPA2 WILD-TYPE     33     31     27     17
D1910V11, multiclass
[1] "Remove cluster labels:" "DPPA2 MUTATED"         
clus
  DPPA2 MUTATED DPPA2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPPA2 MUTATED        2      0      0      0
  DPPA2 WILD-TYPE     52     10     24     22
D1910V12, multiclass
[1] "Remove cluster labels:" "DPPA2 MUTATED"         
clus
  DPPA2 MUTATED DPPA2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" "DPPA2 WILD-TYPE" 

Clustering(1911) Variable = MUC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        3      0      0      0
  MUC2 WILD-TYPE     43     58     64     43
D1911V1, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        3      0      0
  MUC2 WILD-TYPE     48     83     77
D1911V2, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            0             83
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED       18      4      2      1
  MUC2 WILD-TYPE    160    179     99     19
D1911V3, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1           18            160
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        5      3     13
  MUC2 WILD-TYPE     82     77     87
D1911V4, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            3             77
  CLUS_3           13             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        5     10      7
  MUC2 WILD-TYPE     84    150    131
D1911V5, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            5             84
  CLUS_2           10            150
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        9     10      3
  MUC2 WILD-TYPE    173    123     69
D1911V6, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            9            173
  CLUS_2           10            123
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        4     10      7      4
  MUC2 WILD-TYPE    108     86     85    182
D1911V7, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2           10             86
  CLUS_3            7             85
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC2 MUTATED        2      5      9      3      2      0      4
  MUC2 WILD-TYPE     58     45     40     37     61    125     95
D1911V8, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            5             45
  CLUS_3            9             40
  CLUS_4            3             37
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED       15      3      2      5
  MUC2 WILD-TYPE    115     75     66    191
D1911V9, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1           15            115
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MUC2 MUTATED        4      4      2      2      6      2      2      1      2
  MUC2 WILD-TYPE     36     58     26     78     63     46     41     27     72
D1911V10, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            6             63
  CLUS_6            2             46
  CLUS_7            2             41
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        1      1      0      4
  MUC2 WILD-TYPE     32     30     27     15
D1911V11, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        4      1      0      1
  MUC2 WILD-TYPE     50      9     24     21
D1911V12, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            1              9
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1912) Variable = CTTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTTN MUTATED        0      0      0      1
  CTTN WILD-TYPE     46     58     64     42
D1912V1, multiclass
[1] "Remove cluster labels:" "CTTN MUTATED"          
clus
  CTTN MUTATED CTTN WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTTN MUTATED        0      0      1
  CTTN WILD-TYPE     51     83     76
D1912V2, multiclass
[1] "Remove cluster labels:" "CTTN MUTATED"          
clus
  CTTN MUTATED CTTN WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" "CTTN WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CTTN WILD-TYPE" "CTTN WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTTN MUTATED        4      0      1      0
  CTTN WILD-TYPE    174    183    100     20
D1912V3, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTTN MUTATED        2      0      2
  CTTN WILD-TYPE     85     80     98
D1912V4, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTTN MUTATED        0      1      2
  CTTN WILD-TYPE     89    159    136
D1912V5, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTTN MUTATED        1      2      0
  CTTN WILD-TYPE    181    131     72
D1912V6, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTTN MUTATED        0      3      1      1
  CTTN WILD-TYPE    112     93     91    185
D1912V7, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTTN MUTATED        1      1      2      1      0      0      0
  CTTN WILD-TYPE     59     49     47     39     63    125     99
D1912V8, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTTN MUTATED        3      0      0      2
  CTTN WILD-TYPE    127     78     68    194
D1912V9, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CTTN MUTATED        1      1      0      0      2      0      0      0      1
  CTTN WILD-TYPE     39     61     28     80     67     48     43     28     73
D1912V10, multiclass
        clus
vv       CTTN MUTATED CTTN WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTTN MUTATED        0      0      0      0
  CTTN WILD-TYPE     33     31     27     19
D1912V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTTN MUTATED        0      0      0      0
  CTTN WILD-TYPE     54     10     24     22
D1912V12, multiclass

Clustering(1913) Variable = NFIB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIB MUTATED        2      1      0      2
  NFIB WILD-TYPE     44     57     64     41
D1913V1, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NFIB MUTATED        2      2      1
  NFIB WILD-TYPE     49     81     76
D1913V2, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIB MUTATED       12      2      0      0
  NFIB WILD-TYPE    166    181    101     20
D1913V3, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NFIB MUTATED        4      0      4
  NFIB WILD-TYPE     83     80     96
D1913V4, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NFIB MUTATED        1      6      5
  NFIB WILD-TYPE     88    154    133
D1913V5, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NFIB MUTATED        4      7      1
  NFIB WILD-TYPE    178    126     71
D1913V6, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            4            178
  CLUS_2            7            126
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIB MUTATED        1      2      4      7
  NFIB WILD-TYPE    111     94     88    179
D1913V7, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            4             88
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NFIB MUTATED        1      2      4      0      0      2      5
  NFIB WILD-TYPE     59     48     45     40     63    123     94
D1913V8, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIB MUTATED        2      2      1      8
  NFIB WILD-TYPE    128     76     67    188
D1913V9, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NFIB MUTATED        0      1      0      4      6      0      0      0      2
  NFIB WILD-TYPE     40     61     28     76     63     48     43     28     72
D1913V10, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            4             76
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIB MUTATED        1      0      1      1
  NFIB WILD-TYPE     32     31     26     18
D1913V11, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFIB MUTATED        2      0      1      0
  NFIB WILD-TYPE     52     10     23     22
D1913V12, multiclass
        clus
vv       NFIB MUTATED NFIB WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1914) Variable = IFNA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA1 MUTATED        0      0      0      1
  IFNA1 WILD-TYPE     46     58     64     42
D1914V1, multiclass
[1] "Remove cluster labels:" "IFNA1 MUTATED"         
clus
  IFNA1 MUTATED IFNA1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA1 MUTATED        1      0      0
  IFNA1 WILD-TYPE     50     83     77
D1914V2, multiclass
[1] "Remove cluster labels:" "IFNA1 MUTATED"         
clus
  IFNA1 MUTATED IFNA1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA1 MUTATED        3      1      2      1
  IFNA1 WILD-TYPE    175    182     99     19
D1914V3, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA1 MUTATED        2      1      3
  IFNA1 WILD-TYPE     85     79     97
D1914V4, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA1 MUTATED        2      1      3
  IFNA1 WILD-TYPE     87    159    135
D1914V5, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFNA1 MUTATED        6      0      0
  IFNA1 WILD-TYPE    176    133     72
D1914V6, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA1 MUTATED        1      2      3      1
  IFNA1 WILD-TYPE    111     94     89    185
D1914V7, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFNA1 MUTATED        0      3      2      0      1      0      1
  IFNA1 WILD-TYPE     60     47     47     40     62    125     98
D1914V8, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA1 MUTATED        4      1      0      1
  IFNA1 WILD-TYPE    126     77     68    195
D1914V9, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFNA1 MUTATED        2      1      1      1      1      0      0      0
  IFNA1 WILD-TYPE     38     61     27     79     68     48     43     28
                 vv
clus              CLUS_9
  IFNA1 MUTATED        0
  IFNA1 WILD-TYPE     74
D1914V10, multiclass
        clus
vv       IFNA1 MUTATED IFNA1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA1 MUTATED        1      0      0      1
  IFNA1 WILD-TYPE     32     31     27     18
D1914V11, multiclass
[1] "Remove cluster labels:" "IFNA1 MUTATED"         
clus
  IFNA1 MUTATED IFNA1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AZ-4323      TCGA-AZ-4616 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA1 MUTATED        1      0      1      0
  IFNA1 WILD-TYPE     53     10     23     22
D1914V12, multiclass
[1] "Remove cluster labels:" "IFNA1 MUTATED"         
clus
  IFNA1 MUTATED IFNA1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AZ-4323      TCGA-AZ-4616 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" "IFNA1 WILD-TYPE" 

Clustering(1915) Variable = RGS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        3      0      0      4
  RGS3 WILD-TYPE     43     58     64     39
D1915V1, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        5      0      2
  RGS3 WILD-TYPE     46     83     75
D1915V2, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            5             46
  CLUS_2            0             83
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED       15      2      0      1
  RGS3 WILD-TYPE    163    181    101     19
D1915V3, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        4      3      4
  RGS3 WILD-TYPE     83     77     96
D1915V4, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        3      6      7
  RGS3 WILD-TYPE     86    154    131
D1915V5, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            6            154
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS3 MUTATED        5      7      4
  RGS3 WILD-TYPE    177    126     68
D1915V6, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            7            126
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        3      4      3      8
  RGS3 WILD-TYPE    109     92     89    178
D1915V7, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RGS3 MUTATED        3      3      4      1      0      0      7
  RGS3 WILD-TYPE     57     47     45     39     63    125     92
D1915V8, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        5      2      2      8
  RGS3 WILD-TYPE    125     76     66    188
D1915V9, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RGS3 MUTATED        3      3      2      0      6      0      2      0      1
  RGS3 WILD-TYPE     37     59     26     80     63     48     41     28     73
D1915V10, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        4      0      0      1
  RGS3 WILD-TYPE     29     31     27     18
D1915V11, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS3 MUTATED        4      0      0      1
  RGS3 WILD-TYPE     50     10     24     21
D1915V12, multiclass
        clus
vv       RGS3 MUTATED RGS3 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1916) Variable = CCDC89 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC89 MUTATED        0      0      0      0
  CCDC89 WILD-TYPE     46     58     64     43
D1916V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC89 MUTATED        0      0      0
  CCDC89 WILD-TYPE     51     83     77
D1916V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC89 MUTATED        4      0      0      0
  CCDC89 WILD-TYPE    174    183    101     20
D1916V3, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC89 MUTATED        2      0      2
  CCDC89 WILD-TYPE     85     80     98
D1916V4, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC89 MUTATED        1      1      1
  CCDC89 WILD-TYPE     88    159    137
D1916V5, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC89 MUTATED        0      1      2
  CCDC89 WILD-TYPE    182    132     70
D1916V6, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              0              182
  CLUS_2              1              132
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC89 MUTATED        0      3      1      0
  CCDC89 WILD-TYPE    112     93     91    186
D1916V7, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC89 MUTATED        0      1      3      0      0      0      0
  CCDC89 WILD-TYPE     60     49     46     40     63    125     99
D1916V8, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC89 MUTATED        1      1      0      2
  CCDC89 WILD-TYPE    129     77     68    194
D1916V9, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC89 MUTATED        0      1      0      0      2      0      0      0
  CCDC89 WILD-TYPE     40     61     28     80     67     48     43     28
                  vv
clus               CLUS_9
  CCDC89 MUTATED        1
  CCDC89 WILD-TYPE     73
D1916V10, multiclass
        clus
vv       CCDC89 MUTATED CCDC89 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC89 MUTATED        0      0      0      1
  CCDC89 WILD-TYPE     33     31     27     18
D1916V11, multiclass
[1] "Remove cluster labels:" "CCDC89 MUTATED"        
clus
  CCDC89 MUTATED CCDC89 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-G5-6641 
"CCDC89 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC89 MUTATED        0      0      1      0
  CCDC89 WILD-TYPE     54     10     23     22
D1916V12, multiclass
[1] "Remove cluster labels:" "CCDC89 MUTATED"        
clus
  CCDC89 MUTATED CCDC89 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" "CCDC89 WILD-TYPE" 
      TCGA-G5-6641 
"CCDC89 WILD-TYPE" 

Clustering(1917) Variable = MIA2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        0      0      1      2
  MIA2 WILD-TYPE     46     58     63     41
D1917V1, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA2 MUTATED        0      2      1
  MIA2 WILD-TYPE     51     81     76
D1917V2, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        6      4      1      1
  MIA2 WILD-TYPE    172    179    100     19
D1917V3, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            4            179
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA2 MUTATED        5      2      2
  MIA2 WILD-TYPE     82     78     98
D1917V4, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA2 MUTATED        1      6      4
  MIA2 WILD-TYPE     88    154    134
D1917V5, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            6            154
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA2 MUTATED        5      5      1
  MIA2 WILD-TYPE    177    128     71
D1917V6, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        4      0      4      4
  MIA2 WILD-TYPE    108     96     88    182
D1917V7, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            0             96
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIA2 MUTATED        4      0      3      0      2      1      2
  MIA2 WILD-TYPE     56     50     46     40     61    124     97
D1917V8, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        4      3      1      4
  MIA2 WILD-TYPE    126     75     67    192
D1917V9, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MIA2 MUTATED        1      3      4      2      1      0      0      0      1
  MIA2 WILD-TYPE     39     59     24     78     68     48     43     28     73
D1917V10, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            4             24
  CLUS_4            2             78
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        1      0      2      1
  MIA2 WILD-TYPE     32     31     25     18
D1917V11, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        2      1      1      0
  MIA2 WILD-TYPE     52      9     23     22
D1917V12, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1918) Variable = DDR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDR2 MUTATED        1      0      2      3
  DDR2 WILD-TYPE     45     58     62     40
D1918V1, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDR2 MUTATED        2      2      2
  DDR2 WILD-TYPE     49     81     75
D1918V2, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDR2 MUTATED        8      4      3      0
  DDR2 WILD-TYPE    170    179     98     20
D1918V3, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            4            179
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDR2 MUTATED        2      3      4
  DDR2 WILD-TYPE     85     77     96
D1918V4, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            3             77
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDR2 MUTATED        4      4      3
  DDR2 WILD-TYPE     85    156    135
D1918V5, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            4            156
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DDR2 MUTATED        6      4      1
  DDR2 WILD-TYPE    176    129     71
D1918V6, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            4            129
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDR2 MUTATED        2      4      3      6
  DDR2 WILD-TYPE    110     92     89    180
D1918V7, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDR2 MUTATED        1      2      3      1      2      2      4
  DDR2 WILD-TYPE     59     48     46     39     61    123     95
D1918V8, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            2            123
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDR2 MUTATED        5      3      2      4
  DDR2 WILD-TYPE    125     75     66    192
D1918V9, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DDR2 MUTATED        1      3      3      1      2      1      2      0      1
  DDR2 WILD-TYPE     39     59     25     79     67     47     41     28     73
D1918V10, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDR2 MUTATED        2      1      1      2
  DDR2 WILD-TYPE     31     30     26     17
D1918V11, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDR2 MUTATED        4      0      2      0
  DDR2 WILD-TYPE     50     10     22     22
D1918V12, multiclass
        clus
vv       DDR2 MUTATED DDR2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1919) Variable = IL3 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL3 MUTATED        2      0      1      0
  IL3 WILD-TYPE     44     58     63     43
D1919V1, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           2            44
  CLUS_2           0            58
  CLUS_3           1            63
  CLUS_4           0            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL3 MUTATED        2      0      1
  IL3 WILD-TYPE     49     83     76
D1919V2, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           2            49
  CLUS_2           0            83
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL3 MUTATED        3      2      1      0
  IL3 WILD-TYPE    175    181    100     20
D1919V3, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           3           175
  CLUS_2           2           181
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL3 MUTATED        1      2      0
  IL3 WILD-TYPE     86     78    100
D1919V4, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           1            86
  CLUS_2           2            78
  CLUS_3           0           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL3 MUTATED        0      0      5
  IL3 WILD-TYPE     89    160    133
D1919V5, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           0            89
  CLUS_2           0           160
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL3 MUTATED        4      1      0
  IL3 WILD-TYPE    178    132     72
D1919V6, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           4           178
  CLUS_2           1           132
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL3 MUTATED        2      0      1      3
  IL3 WILD-TYPE    110     96     91    183
D1919V7, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           2           110
  CLUS_2           0            96
  CLUS_3           1            91
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL3 MUTATED        1      0      0      0      2      1      2
  IL3 WILD-TYPE     59     50     49     40     61    124     97
D1919V8, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           0            49
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           1           124
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL3 MUTATED        1      1      1      2
  IL3 WILD-TYPE    129     77     67    194
D1919V9, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           1           129
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IL3 MUTATED        1      1      0      0      0      0      1      2      0
  IL3 WILD-TYPE     39     61     28     80     69     48     42     26     74
D1919V10, multiclass
        clus
vv       IL3 MUTATED IL3 WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           0            69
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           2            26
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL3 MUTATED        0      1      0      0
  IL3 WILD-TYPE     33     30     27     19
D1919V11, multiclass
[1] "Remove cluster labels:" "IL3 MUTATED"           
clus
  IL3 MUTATED IL3 WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL3 MUTATED        1      0      0      0
  IL3 WILD-TYPE     53     10     24     22
D1919V12, multiclass
[1] "Remove cluster labels:" "IL3 MUTATED"           
clus
  IL3 MUTATED IL3 WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" "IL3 WILD-TYPE" 

Clustering(1920) Variable = NCF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCF2 MUTATED        0      1      0      1
  NCF2 WILD-TYPE     46     57     64     42
D1920V1, multiclass
[1] "Remove cluster labels:" "NCF2 MUTATED"          
clus
  NCF2 MUTATED NCF2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AY-4071 
"NCF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCF2 MUTATED        1      1      0
  NCF2 WILD-TYPE     50     82     77
D1920V2, multiclass
[1] "Remove cluster labels:" "NCF2 MUTATED"          
clus
  NCF2 MUTATED NCF2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3866 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" "NCF2 WILD-TYPE" 
    TCGA-AY-4071 
"NCF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCF2 MUTATED        5      3      2      0
  NCF2 WILD-TYPE    173    180     99     20
D1920V3, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCF2 MUTATED        5      1      2
  NCF2 WILD-TYPE     82     79     98
D1920V4, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCF2 MUTATED        2      2      5
  NCF2 WILD-TYPE     87    158    133
D1920V5, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCF2 MUTATED        6      1      2
  NCF2 WILD-TYPE    176    132     70
D1920V6, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCF2 MUTATED        2      3      3      2
  NCF2 WILD-TYPE    110     93     89    184
D1920V7, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NCF2 MUTATED        0      1      3      1      3      1      1
  NCF2 WILD-TYPE     60     49     46     39     60    124     98
D1920V8, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCF2 MUTATED        4      3      0      3
  NCF2 WILD-TYPE    126     75     68    193
D1920V9, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NCF2 MUTATED        2      2      1      1      3      0      0      1      0
  NCF2 WILD-TYPE     38     60     27     79     66     48     43     27     74
D1920V10, multiclass
        clus
vv       NCF2 MUTATED NCF2 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCF2 MUTATED        0      0      0      0
  NCF2 WILD-TYPE     33     31     27     19
D1920V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCF2 MUTATED        0      0      0      0
  NCF2 WILD-TYPE     54     10     24     22
D1920V12, multiclass

Clustering(1921) Variable = DCLRE1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1A MUTATED        2      1      0      3
  DCLRE1A WILD-TYPE     44     57     64     40
D1921V1, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1A MUTATED        3      0      3
  DCLRE1A WILD-TYPE     48     83     74
D1921V2, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1A MUTATED       10      1      2      0
  DCLRE1A WILD-TYPE    168    182     99     20
D1921V3, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1              10               168
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1A MUTATED        1      2      2
  DCLRE1A WILD-TYPE     86     78     98
D1921V4, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1A MUTATED        3      4      3
  DCLRE1A WILD-TYPE     86    156    135
D1921V5, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               3                86
  CLUS_2               4               156
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1A MUTATED        2      6      2
  DCLRE1A WILD-TYPE    180    127     70
D1921V6, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               2               180
  CLUS_2               6               127
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1A MUTATED        2      2      2      7
  DCLRE1A WILD-TYPE    110     94     90    179
D1921V7, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCLRE1A MUTATED        2      1      3      0      1      1      5
  DCLRE1A WILD-TYPE     58     49     46     40     62    124     94
D1921V8, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1A MUTATED        3      0      2      7
  DCLRE1A WILD-TYPE    127     78     66    189
D1921V9, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               2                66
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCLRE1A MUTATED        0      1      2      0      5      0      3      1
  DCLRE1A WILD-TYPE     40     61     26     80     64     48     40     27
                   vv
clus                CLUS_9
  DCLRE1A MUTATED        0
  DCLRE1A WILD-TYPE     74
D1921V10, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               3                40
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1A MUTATED        2      0      0      1
  DCLRE1A WILD-TYPE     31     31     27     18
D1921V11, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1A MUTATED        1      0      1      1
  DCLRE1A WILD-TYPE     53     10     23     21
D1921V12, multiclass
        clus
vv       DCLRE1A MUTATED DCLRE1A WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1922) Variable = ORC4L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC4L MUTATED        0      0      0      3
  ORC4L WILD-TYPE     46     58     64     40
D1922V1, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC4L MUTATED        2      1      0
  ORC4L WILD-TYPE     49     82     77
D1922V2, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC4L MUTATED        6      0      0      1
  ORC4L WILD-TYPE    172    183    101     19
D1922V3, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC4L MUTATED        1      0      3
  ORC4L WILD-TYPE     86     80     97
D1922V4, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC4L MUTATED        1      2      3
  ORC4L WILD-TYPE     88    158    135
D1922V5, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC4L MUTATED        3      3      0
  ORC4L WILD-TYPE    179    130     72
D1922V6, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC4L MUTATED        0      3      1      3
  ORC4L WILD-TYPE    112     93     91    183
D1922V7, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ORC4L MUTATED        0      2      1      1      0      0      3
  ORC4L WILD-TYPE     60     48     48     39     63    125     96
D1922V8, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC4L MUTATED        4      0      0      2
  ORC4L WILD-TYPE    126     78     68    194
D1922V9, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ORC4L MUTATED        1      0      2      1      1      0      1      0
  ORC4L WILD-TYPE     39     62     26     79     68     48     42     28
                 vv
clus              CLUS_9
  ORC4L MUTATED        0
  ORC4L WILD-TYPE     74
D1922V10, multiclass
        clus
vv       ORC4L MUTATED ORC4L WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC4L MUTATED        0      0      1      1
  ORC4L WILD-TYPE     33     31     26     18
D1922V11, multiclass
[1] "Remove cluster labels:" "ORC4L MUTATED"         
clus
  ORC4L MUTATED ORC4L WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6620      TCGA-CI-6621 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC4L MUTATED        1      0      0      1
  ORC4L WILD-TYPE     53     10     24     21
D1922V12, multiclass
[1] "Remove cluster labels:" "ORC4L MUTATED"         
clus
  ORC4L MUTATED ORC4L WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6620      TCGA-CI-6621 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" "ORC4L WILD-TYPE" 

Clustering(1923) Variable = LRRN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN1 MUTATED        2      0      0      4
  LRRN1 WILD-TYPE     44     58     64     39
D1923V1, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN1 MUTATED        4      0      2
  LRRN1 WILD-TYPE     47     83     75
D1923V2, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN1 MUTATED       18      0      1      0
  LRRN1 WILD-TYPE    160    183    100     20
D1923V3, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN1 MUTATED        4      0      9
  LRRN1 WILD-TYPE     83     80     91
D1923V4, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN1 MUTATED        4      3      7
  LRRN1 WILD-TYPE     85    157    131
D1923V5, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN1 MUTATED        9      2      3
  LRRN1 WILD-TYPE    173    131     69
D1923V6, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             9             173
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN1 MUTATED        1      6      7      5
  LRRN1 WILD-TYPE    111     90     85    181
D1923V7, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             7              85
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRN1 MUTATED        1      2     10      1      1      0      4
  LRRN1 WILD-TYPE     59     48     39     39     62    125     95
D1923V8, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3            10              39
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN1 MUTATED        7      4      0      7
  LRRN1 WILD-TYPE    123     74     68    189
D1923V9, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRN1 MUTATED        2      6      1      0      9      0      0      0
  LRRN1 WILD-TYPE     38     56     27     80     60     48     43     28
                 vv
clus              CLUS_9
  LRRN1 MUTATED        0
  LRRN1 WILD-TYPE     74
D1923V10, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             6              56
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             9              60
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN1 MUTATED        1      0      0      6
  LRRN1 WILD-TYPE     32     31     27     13
D1923V11, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             6              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN1 MUTATED        6      0      1      0
  LRRN1 WILD-TYPE     48     10     23     22
D1923V12, multiclass
        clus
vv       LRRN1 MUTATED LRRN1 WILD-TYPE
  CLUS_1             6              48
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1924) Variable = KIAA1267 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        4      0      2      1
  KIAA1267 WILD-TYPE     42     58     62     42
D1924V1, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                4                 42
  CLUS_2                0                 58
  CLUS_3                2                 62
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        4      1      2
  KIAA1267 WILD-TYPE     47     82     75
D1924V2, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                1                 82
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED       15      1      3      0
  KIAA1267 WILD-TYPE    163    182     98     20
D1924V3, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1               15                163
  CLUS_2                1                182
  CLUS_3                3                 98
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        7      0      4
  KIAA1267 WILD-TYPE     80     80     96
D1924V4, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                0                 80
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        3      6      6
  KIAA1267 WILD-TYPE     86    154    132
D1924V5, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                6                154
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        5      7      3
  KIAA1267 WILD-TYPE    177    126     69
D1924V6, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                7                126
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        1      7      4      7
  KIAA1267 WILD-TYPE    111     89     88    179
D1924V7, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                7                 89
  CLUS_3                4                 88
  CLUS_4                7                179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1267 MUTATED        1      1      8      1      1      2      5
  KIAA1267 WILD-TYPE     59     49     41     39     62    123     94
D1924V8, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                8                 41
  CLUS_4                1                 39
  CLUS_5                1                 62
  CLUS_6                2                123
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        6      4      0      9
  KIAA1267 WILD-TYPE    124     74     68    187
D1924V9, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                6                124
  CLUS_2                4                 74
  CLUS_3                0                 68
  CLUS_4                9                187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1267 MUTATED        1      6      0      0      9      0      0      1
  KIAA1267 WILD-TYPE     39     56     28     80     60     48     43     27
                    vv
clus                 CLUS_9
  KIAA1267 MUTATED        2
  KIAA1267 WILD-TYPE     72
D1924V10, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                6                 56
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                9                 60
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        1      1      0      3
  KIAA1267 WILD-TYPE     32     30     27     16
D1924V11, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        3      0      2      0
  KIAA1267 WILD-TYPE     51     10     22     22
D1924V12, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1925) Variable = RPS6KA6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA6 MUTATED        2      1      1      2
  RPS6KA6 WILD-TYPE     44     57     63     41
D1925V1, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA6 MUTATED        2      3      1
  RPS6KA6 WILD-TYPE     49     80     76
D1925V2, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA6 MUTATED       11      5      2      0
  RPS6KA6 WILD-TYPE    167    178     99     20
D1925V3, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               5               178
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA6 MUTATED        3      3      5
  RPS6KA6 WILD-TYPE     84     77     95
D1925V4, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA6 MUTATED        5      6      4
  RPS6KA6 WILD-TYPE     84    154    134
D1925V5, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               5                84
  CLUS_2               6               154
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RPS6KA6 MUTATED        9      5      1
  RPS6KA6 WILD-TYPE    173    128     71
D1925V6, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA6 MUTATED        2      4      4      8
  RPS6KA6 WILD-TYPE    110     92     88    178
D1925V7, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               4                92
  CLUS_3               4                88
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPS6KA6 MUTATED        3      1      5      1      0      3      5
  RPS6KA6 WILD-TYPE     57     49     44     39     63    122     94
D1925V8, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               3               122
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA6 MUTATED        8      2      0      8
  RPS6KA6 WILD-TYPE    122     76     68    188
D1925V9, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RPS6KA6 MUTATED        3      3      2      3      4      0      0      2
  RPS6KA6 WILD-TYPE     37     59     26     77     65     48     43     26
                   vv
clus                CLUS_9
  RPS6KA6 MUTATED        1
  RPS6KA6 WILD-TYPE     73
D1925V10, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               3                77
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               2                26
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA6 MUTATED        0      1      0      4
  RPS6KA6 WILD-TYPE     33     30     27     15
D1925V11, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS6KA6 MUTATED        4      0      1      0
  RPS6KA6 WILD-TYPE     50     10     23     22
D1925V12, multiclass
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1926) Variable = GPRIN3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN3 MUTATED        2      0      0      2
  GPRIN3 WILD-TYPE     44     58     64     41
D1926V1, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN3 MUTATED        3      0      1
  GPRIN3 WILD-TYPE     48     83     76
D1926V2, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN3 MUTATED        6      2      2      0
  GPRIN3 WILD-TYPE    172    181     99     20
D1926V3, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN3 MUTATED        3      2      1
  GPRIN3 WILD-TYPE     84     78     99
D1926V4, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN3 MUTATED        1      0      7
  GPRIN3 WILD-TYPE     88    160    131
D1926V5, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN3 MUTATED        4      2      2
  GPRIN3 WILD-TYPE    178    131     70
D1926V6, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN3 MUTATED        2      0      4      4
  GPRIN3 WILD-TYPE    110     96     88    182
D1926V7, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              0               96
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPRIN3 MUTATED        0      1      2      2      1      0      4
  GPRIN3 WILD-TYPE     60     49     47     38     62    125     95
D1926V8, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN3 MUTATED        2      2      2      3
  GPRIN3 WILD-TYPE    128     76     66    193
D1926V9, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPRIN3 MUTATED        1      1      0      1      2      0      2      1
  GPRIN3 WILD-TYPE     39     61     28     79     67     48     41     27
                  vv
clus               CLUS_9
  GPRIN3 MUTATED        1
  GPRIN3 WILD-TYPE     73
D1926V10, multiclass
        clus
vv       GPRIN3 MUTATED GPRIN3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN3 MUTATED        0      1      0      0
  GPRIN3 WILD-TYPE     33     30     27     19
D1926V11, multiclass
[1] "Remove cluster labels:" "GPRIN3 MUTATED"        
clus
  GPRIN3 MUTATED GPRIN3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-G5-6641 
"GPRIN3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN3 MUTATED        0      0      0      1
  GPRIN3 WILD-TYPE     54     10     24     21
D1926V12, multiclass
[1] "Remove cluster labels:" "GPRIN3 MUTATED"        
clus
  GPRIN3 MUTATED GPRIN3 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" "GPRIN3 WILD-TYPE" 
      TCGA-G5-6641 
"GPRIN3 WILD-TYPE" 

Clustering(1927) Variable = DHDDS MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHDDS MUTATED        0      0      0      1
  DHDDS WILD-TYPE     46     58     64     42
D1927V1, multiclass
[1] "Remove cluster labels:" "DHDDS MUTATED"         
clus
  DHDDS MUTATED DHDDS WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHDDS MUTATED        0      0      1
  DHDDS WILD-TYPE     51     83     76
D1927V2, multiclass
[1] "Remove cluster labels:" "DHDDS MUTATED"         
clus
  DHDDS MUTATED DHDDS WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHDDS MUTATED        5      1      0      0
  DHDDS WILD-TYPE    173    182    101     20
D1927V3, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHDDS MUTATED        1      1      3
  DHDDS WILD-TYPE     86     79     97
D1927V4, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHDDS MUTATED        2      1      1
  DHDDS WILD-TYPE     87    159    137
D1927V5, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             159
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHDDS MUTATED        1      1      2
  DHDDS WILD-TYPE    181    132     70
D1927V6, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             1             181
  CLUS_2             1             132
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHDDS MUTATED        2      3      0      1
  DHDDS WILD-TYPE    110     93     92    185
D1927V7, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DHDDS MUTATED        1      1      2      1      0      0      1
  DHDDS WILD-TYPE     59     49     47     39     63    125     98
D1927V8, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHDDS MUTATED        2      0      2      2
  DHDDS WILD-TYPE    128     78     66    194
D1927V9, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DHDDS MUTATED        1      0      1      0      2      2      0      0
  DHDDS WILD-TYPE     39     62     27     80     67     46     43     28
                 vv
clus              CLUS_9
  DHDDS MUTATED        0
  DHDDS WILD-TYPE     74
D1927V10, multiclass
        clus
vv       DHDDS MUTATED DHDDS WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHDDS MUTATED        1      0      1      0
  DHDDS WILD-TYPE     32     31     26     19
D1927V11, multiclass
[1] "Remove cluster labels:" "DHDDS MUTATED"         
clus
  DHDDS MUTATED DHDDS WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHDDS MUTATED        0      0      0      2
  DHDDS WILD-TYPE     54     10     24     20
D1927V12, multiclass
[1] "Remove cluster labels:" "DHDDS MUTATED"         
clus
  DHDDS MUTATED DHDDS WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" "DHDDS WILD-TYPE" 

Clustering(1928) Variable = ARL11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARL11 MUTATED        1      0      0      1
  ARL11 WILD-TYPE     45     58     64     42
D1928V1, multiclass
[1] "Remove cluster labels:" "ARL11 MUTATED"         
clus
  ARL11 MUTATED ARL11 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846      TCGA-AA-3848 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AY-4071 
"ARL11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARL11 MUTATED        2      0      0
  ARL11 WILD-TYPE     49     83     77
D1928V2, multiclass
[1] "Remove cluster labels:" "ARL11 MUTATED"         
clus
  ARL11 MUTATED ARL11 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846      TCGA-AA-3848 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" "ARL11 WILD-TYPE" 
     TCGA-AY-4071 
"ARL11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARL11 MUTATED        5      0      2      0
  ARL11 WILD-TYPE    173    183     99     20
D1928V3, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARL11 MUTATED        2      1      2
  ARL11 WILD-TYPE     85     79     98
D1928V4, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARL11 MUTATED        1      1      4
  ARL11 WILD-TYPE     88    159    134
D1928V5, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARL11 MUTATED        5      1      0
  ARL11 WILD-TYPE    177    132     72
D1928V6, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARL11 MUTATED        1      2      2      2
  ARL11 WILD-TYPE    111     94     90    184
D1928V7, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARL11 MUTATED        1      2      2      0      0      0      2
  ARL11 WILD-TYPE     59     48     47     40     63    125     97
D1928V8, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARL11 MUTATED        4      0      0      3
  ARL11 WILD-TYPE    126     78     68    193
D1928V9, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARL11 MUTATED        1      2      1      1      2      0      0      0
  ARL11 WILD-TYPE     39     60     27     79     67     48     43     28
                 vv
clus              CLUS_9
  ARL11 MUTATED        0
  ARL11 WILD-TYPE     74
D1928V10, multiclass
        clus
vv       ARL11 MUTATED ARL11 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARL11 MUTATED        0      0      0      0
  ARL11 WILD-TYPE     33     31     27     19
D1928V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARL11 MUTATED        0      0      0      0
  ARL11 WILD-TYPE     54     10     24     22
D1928V12, multiclass

Clustering(1929) Variable = ATP2A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A2 MUTATED        3      0      0      3
  ATP2A2 WILD-TYPE     43     58     64     40
D1929V1, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A2 MUTATED        5      0      1
  ATP2A2 WILD-TYPE     46     83     76
D1929V2, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              0               83
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A2 MUTATED       13      2      0      0
  ATP2A2 WILD-TYPE    165    181    101     20
D1929V3, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A2 MUTATED        2      1      7
  ATP2A2 WILD-TYPE     85     79     93
D1929V4, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A2 MUTATED        0      6      8
  ATP2A2 WILD-TYPE     89    154    130
D1929V5, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A2 MUTATED        7      7      0
  ATP2A2 WILD-TYPE    175    126     72
D1929V6, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              7              126
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A2 MUTATED        2      5      3      6
  ATP2A2 WILD-TYPE    110     91     89    180
D1929V7, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              5               91
  CLUS_3              3               89
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2A2 MUTATED        2      2      5      0      0      0      7
  ATP2A2 WILD-TYPE     58     48     44     40     63    125     92
D1929V8, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A2 MUTATED        6      0      1      7
  ATP2A2 WILD-TYPE    124     78     67    189
D1929V9, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP2A2 MUTATED        0      1      3      1      7      0      1      0
  ATP2A2 WILD-TYPE     40     61     25     79     62     48     42     28
                  vv
clus               CLUS_9
  ATP2A2 MUTATED        1
  ATP2A2 WILD-TYPE     73
D1929V10, multiclass
        clus
vv       ATP2A2 MUTATED ATP2A2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A2 MUTATED        0      0      0      2
  ATP2A2 WILD-TYPE     33     31     27     17
D1929V11, multiclass
[1] "Remove cluster labels:" "ATP2A2 MUTATED"        
clus
  ATP2A2 MUTATED ATP2A2 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A2 MUTATED        1      0      1      0
  ATP2A2 WILD-TYPE     53     10     23     22
D1929V12, multiclass
[1] "Remove cluster labels:" "ATP2A2 MUTATED"        
clus
  ATP2A2 MUTATED ATP2A2 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" "ATP2A2 WILD-TYPE" 

Clustering(1930) Variable = HSF5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF5 MUTATED        2      0      0      1
  HSF5 WILD-TYPE     44     58     64     42
D1930V1, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF5 MUTATED        2      1      0
  HSF5 WILD-TYPE     49     82     77
D1930V2, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF5 MUTATED        4      3      0      1
  HSF5 WILD-TYPE    174    180    101     19
D1930V3, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF5 MUTATED        2      2      1
  HSF5 WILD-TYPE     85     78     99
D1930V4, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            1             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF5 MUTATED        0      5      2
  HSF5 WILD-TYPE     89    155    136
D1930V5, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF5 MUTATED        1      4      2
  HSF5 WILD-TYPE    181    129     70
D1930V6, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            1            181
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF5 MUTATED        2      2      1      3
  HSF5 WILD-TYPE    110     94     91    183
D1930V7, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSF5 MUTATED        0      3      1      0      1      0      3
  HSF5 WILD-TYPE     60     47     48     40     62    125     96
D1930V8, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF5 MUTATED        3      0      1      4
  HSF5 WILD-TYPE    127     78     67    192
D1930V9, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HSF5 MUTATED        1      0      1      1      3      1      0      0      1
  HSF5 WILD-TYPE     39     62     27     79     66     47     43     28     73
D1930V10, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF5 MUTATED        1      0      1      1
  HSF5 WILD-TYPE     32     31     26     18
D1930V11, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF5 MUTATED        1      1      1      0
  HSF5 WILD-TYPE     53      9     23     22
D1930V12, multiclass
        clus
vv       HSF5 MUTATED HSF5 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1931) Variable = ACCN5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN5 MUTATED        1      0      0      4
  ACCN5 WILD-TYPE     45     58     64     39
D1931V1, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACCN5 MUTATED        1      2      2
  ACCN5 WILD-TYPE     50     81     75
D1931V2, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN5 MUTATED        9      3      2      0
  ACCN5 WILD-TYPE    169    180     99     20
D1931V3, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACCN5 MUTATED        4      2      3
  ACCN5 WILD-TYPE     83     78     97
D1931V4, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACCN5 MUTATED        0      4      6
  ACCN5 WILD-TYPE     89    156    132
D1931V5, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACCN5 MUTATED        5      5      0
  ACCN5 WILD-TYPE    177    128     72
D1931V6, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN5 MUTATED        4      3      2      5
  ACCN5 WILD-TYPE    108     93     90    181
D1931V7, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ACCN5 MUTATED        5      3      1      0      0      1      4
  ACCN5 WILD-TYPE     55     47     48     40     63    124     95
D1931V8, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             3              47
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN5 MUTATED        6      0      2      5
  ACCN5 WILD-TYPE    124     78     66    191
D1931V9, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ACCN5 MUTATED        2      2      1      2      3      0      2      0
  ACCN5 WILD-TYPE     38     60     27     78     66     48     41     28
                 vv
clus              CLUS_9
  ACCN5 MUTATED        1
  ACCN5 WILD-TYPE     73
D1931V10, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN5 MUTATED        1      0      1      1
  ACCN5 WILD-TYPE     32     31     26     18
D1931V11, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACCN5 MUTATED        2      0      1      0
  ACCN5 WILD-TYPE     52     10     23     22
D1931V12, multiclass
        clus
vv       ACCN5 MUTATED ACCN5 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1932) Variable = LRRTM2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRTM2 MUTATED        1      0      1      3
  LRRTM2 WILD-TYPE     45     58     63     40
D1932V1, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRTM2 MUTATED        1      0      4
  LRRTM2 WILD-TYPE     50     83     73
D1932V2, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              0               83
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRTM2 MUTATED        7      2      0      0
  LRRTM2 WILD-TYPE    171    181    101     20
D1932V3, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRTM2 MUTATED        4      0      0
  LRRTM2 WILD-TYPE     83     80    100
D1932V4, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRTM2 MUTATED        0      1      5
  LRRTM2 WILD-TYPE     89    159    133
D1932V5, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRTM2 MUTATED        5      1      0
  LRRTM2 WILD-TYPE    177    132     72
D1932V6, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRTM2 MUTATED        2      2      1      4
  LRRTM2 WILD-TYPE    110     94     91    182
D1932V7, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRRTM2 MUTATED        2      2      1      0      0      2      2
  LRRTM2 WILD-TYPE     58     48     48     40     63    123     97
D1932V8, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRTM2 MUTATED        4      0      0      4
  LRRTM2 WILD-TYPE    126     78     68    192
D1932V9, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRRTM2 MUTATED        2      1      2      1      1      0      0      1
  LRRTM2 WILD-TYPE     38     61     26     79     68     48     43     27
                  vv
clus               CLUS_9
  LRRTM2 MUTATED        0
  LRRTM2 WILD-TYPE     74
D1932V10, multiclass
        clus
vv       LRRTM2 MUTATED LRRTM2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRTM2 MUTATED        0      0      0      0
  LRRTM2 WILD-TYPE     33     31     27     19
D1932V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRTM2 MUTATED        0      0      0      0
  LRRTM2 WILD-TYPE     54     10     24     22
D1932V12, multiclass

Clustering(1933) Variable = ATR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATR MUTATED        5      1      0      5
  ATR WILD-TYPE     41     57     64     38
D1933V1, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           5            41
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           5            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATR MUTATED        5      3      3
  ATR WILD-TYPE     46     80     74
D1933V2, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           5            46
  CLUS_2           3            80
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATR MUTATED       22      7      3      1
  ATR WILD-TYPE    156    176     98     19
D1933V3, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1          22           156
  CLUS_2           7           176
  CLUS_3           3            98
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATR MUTATED        6      6     10
  ATR WILD-TYPE     81     74     90
D1933V4, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           6            81
  CLUS_2           6            74
  CLUS_3          10            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATR MUTATED        3     13     11
  ATR WILD-TYPE     86    147    127
D1933V5, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           3            86
  CLUS_2          13           147
  CLUS_3          11           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATR MUTATED       11     11      5
  ATR WILD-TYPE    171    122     67
D1933V6, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1          11           171
  CLUS_2          11           122
  CLUS_3           5            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATR MUTATED        7      9      6     11
  ATR WILD-TYPE    105     87     86    175
D1933V7, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           7           105
  CLUS_2           9            87
  CLUS_3           6            86
  CLUS_4          11           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATR MUTATED        7      5      5      4      2      2      8
  ATR WILD-TYPE     53     45     44     36     61    123     91
D1933V8, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           7            53
  CLUS_2           5            45
  CLUS_3           5            44
  CLUS_4           4            36
  CLUS_5           2            61
  CLUS_6           2           123
  CLUS_7           8            91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATR MUTATED       17      3      1     12
  ATR WILD-TYPE    113     75     67    184
D1933V9, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1          17           113
  CLUS_2           3            75
  CLUS_3           1            67
  CLUS_4          12           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ATR MUTATED        5      4      5      4      8      3      4      0      0
  ATR WILD-TYPE     35     58     23     76     61     45     39     28     74
D1933V10, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           5            35
  CLUS_2           4            58
  CLUS_3           5            23
  CLUS_4           4            76
  CLUS_5           8            61
  CLUS_6           3            45
  CLUS_7           4            39
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATR MUTATED        2      0      0      2
  ATR WILD-TYPE     31     31     27     17
D1933V11, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATR MUTATED        2      0      1      1
  ATR WILD-TYPE     52     10     23     21
D1933V12, multiclass
        clus
vv       ATR MUTATED ATR WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           1            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1934) Variable = FBLIM1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLIM1 MUTATED        0      1      0      0
  FBLIM1 WILD-TYPE     46     57     64     43
D1934V1, multiclass
[1] "Remove cluster labels:" "FBLIM1 MUTATED"        
clus
  FBLIM1 MUTATED FBLIM1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBLIM1 MUTATED        0      0      1
  FBLIM1 WILD-TYPE     51     83     76
D1934V2, multiclass
[1] "Remove cluster labels:" "FBLIM1 MUTATED"        
clus
  FBLIM1 MUTATED FBLIM1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLIM1 MUTATED        5      0      1      0
  FBLIM1 WILD-TYPE    173    183    100     20
D1934V3, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBLIM1 MUTATED        1      0      4
  FBLIM1 WILD-TYPE     86     80     96
D1934V4, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBLIM1 MUTATED        1      2      2
  FBLIM1 WILD-TYPE     88    158    136
D1934V5, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBLIM1 MUTATED        2      2      1
  FBLIM1 WILD-TYPE    180    131     71
D1934V6, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLIM1 MUTATED        0      5      0      1
  FBLIM1 WILD-TYPE    112     91     92    185
D1934V7, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              0               92
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBLIM1 MUTATED        0      0      3      2      0      1      0
  FBLIM1 WILD-TYPE     60     50     46     38     63    124     99
D1934V8, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLIM1 MUTATED        5      0      0      1
  FBLIM1 WILD-TYPE    125     78     68    195
D1934V9, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBLIM1 MUTATED        2      1      0      1      2      0      0      0
  FBLIM1 WILD-TYPE     38     61     28     79     67     48     43     28
                  vv
clus               CLUS_9
  FBLIM1 MUTATED        0
  FBLIM1 WILD-TYPE     74
D1934V10, multiclass
        clus
vv       FBLIM1 MUTATED FBLIM1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLIM1 MUTATED        0      0      0      2
  FBLIM1 WILD-TYPE     33     31     27     17
D1934V11, multiclass
[1] "Remove cluster labels:" "FBLIM1 MUTATED"        
clus
  FBLIM1 MUTATED FBLIM1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBLIM1 MUTATED        1      0      1      0
  FBLIM1 WILD-TYPE     53     10     23     22
D1934V12, multiclass
[1] "Remove cluster labels:" "FBLIM1 MUTATED"        
clus
  FBLIM1 MUTATED FBLIM1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" "FBLIM1 WILD-TYPE" 

Clustering(1935) Variable = CCDC14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC14 MUTATED        2      0      0      1
  CCDC14 WILD-TYPE     44     58     64     42
D1935V1, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC14 MUTATED        3      0      0
  CCDC14 WILD-TYPE     48     83     77
D1935V2, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC14 MUTATED       10      1      0      0
  CCDC14 WILD-TYPE    168    182    101     20
D1935V3, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC14 MUTATED        5      0      3
  CCDC14 WILD-TYPE     82     80     97
D1935V4, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC14 MUTATED        3      1      5
  CCDC14 WILD-TYPE     86    159    133
D1935V5, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              1              159
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC14 MUTATED        6      2      1
  CCDC14 WILD-TYPE    176    131     71
D1935V6, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC14 MUTATED        1      2      4      4
  CCDC14 WILD-TYPE    111     94     88    182
D1935V7, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC14 MUTATED        0      1      3      1      2      0      4
  CCDC14 WILD-TYPE     60     49     46     39     61    125     95
D1935V8, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC14 MUTATED        3      3      0      4
  CCDC14 WILD-TYPE    127     75     68    192
D1935V9, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC14 MUTATED        1      2      1      1      3      0      0      0
  CCDC14 WILD-TYPE     39     60     27     79     66     48     43     28
                  vv
clus               CLUS_9
  CCDC14 MUTATED        2
  CCDC14 WILD-TYPE     72
D1935V10, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC14 MUTATED        1      0      0      2
  CCDC14 WILD-TYPE     32     31     27     17
D1935V11, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC14 MUTATED        3      0      0      0
  CCDC14 WILD-TYPE     51     10     24     22
D1935V12, multiclass
        clus
vv       CCDC14 MUTATED CCDC14 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1936) Variable = SKAP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKAP2 MUTATED        1      1      0      1
  SKAP2 WILD-TYPE     45     57     64     42
D1936V1, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SKAP2 MUTATED        2      1      0
  SKAP2 WILD-TYPE     49     82     77
D1936V2, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKAP2 MUTATED        4      1      0      0
  SKAP2 WILD-TYPE    174    182    101     20
D1936V3, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SKAP2 MUTATED        2      1      0
  SKAP2 WILD-TYPE     85     79    100
D1936V4, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SKAP2 MUTATED        0      1      3
  SKAP2 WILD-TYPE     89    159    135
D1936V5, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SKAP2 MUTATED        2      2      0
  SKAP2 WILD-TYPE    180    131     72
D1936V6, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKAP2 MUTATED        1      1      1      2
  SKAP2 WILD-TYPE    111     95     91    184
D1936V7, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SKAP2 MUTATED        0      1      1      0      0      1      2
  SKAP2 WILD-TYPE     60     49     48     40     63    124     97
D1936V8, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKAP2 MUTATED        0      1      1      2
  SKAP2 WILD-TYPE    130     77     67    194
D1936V9, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             0             130
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SKAP2 MUTATED        0      1      0      0      1      0      0      0
  SKAP2 WILD-TYPE     40     61     28     80     68     48     43     28
                 vv
clus              CLUS_9
  SKAP2 MUTATED        2
  SKAP2 WILD-TYPE     72
D1936V10, multiclass
        clus
vv       SKAP2 MUTATED SKAP2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKAP2 MUTATED        0      0      0      1
  SKAP2 WILD-TYPE     33     31     27     18
D1936V11, multiclass
[1] "Remove cluster labels:" "SKAP2 MUTATED"         
clus
  SKAP2 MUTATED SKAP2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-G5-6641 
"SKAP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKAP2 MUTATED        1      0      0      0
  SKAP2 WILD-TYPE     53     10     24     22
D1936V12, multiclass
[1] "Remove cluster labels:" "SKAP2 MUTATED"         
clus
  SKAP2 MUTATED SKAP2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" "SKAP2 WILD-TYPE" 
     TCGA-G5-6641 
"SKAP2 WILD-TYPE" 

Clustering(1937) Variable = MYO1D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO1D MUTATED        1      0      0      4
  MYO1D WILD-TYPE     45     58     64     39
D1937V1, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO1D MUTATED        3      0      2
  MYO1D WILD-TYPE     48     83     75
D1937V2, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO1D MUTATED        8      1      1      1
  MYO1D WILD-TYPE    170    182    100     19
D1937V3, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO1D MUTATED        3      2      1
  MYO1D WILD-TYPE     84     78     99
D1937V4, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO1D MUTATED        1      4      4
  MYO1D WILD-TYPE     88    156    134
D1937V5, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO1D MUTATED        4      2      3
  MYO1D WILD-TYPE    178    131     69
D1937V6, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO1D MUTATED        2      1      2      6
  MYO1D WILD-TYPE    110     95     90    180
D1937V7, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYO1D MUTATED        2      0      1      2      1      0      5
  MYO1D WILD-TYPE     58     50     48     38     62    125     94
D1937V8, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO1D MUTATED        3      2      0      5
  MYO1D WILD-TYPE    127     76     68    191
D1937V9, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYO1D MUTATED        2      2      1      1      3      0      0      0
  MYO1D WILD-TYPE     38     60     27     79     66     48     43     28
                 vv
clus              CLUS_9
  MYO1D MUTATED        1
  MYO1D WILD-TYPE     73
D1937V10, multiclass
        clus
vv       MYO1D MUTATED MYO1D WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO1D MUTATED        1      0      0      0
  MYO1D WILD-TYPE     32     31     27     19
D1937V11, multiclass
[1] "Remove cluster labels:" "MYO1D MUTATED"         
clus
  MYO1D MUTATED MYO1D WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-G5-6641 
"MYO1D WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO1D MUTATED        1      0      0      0
  MYO1D WILD-TYPE     53     10     24     22
D1937V12, multiclass
[1] "Remove cluster labels:" "MYO1D MUTATED"         
clus
  MYO1D MUTATED MYO1D WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" "MYO1D WILD-TYPE" 
     TCGA-G5-6641 
"MYO1D WILD-TYPE" 

Clustering(1938) Variable = ZNF608 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        1      0      1      2
  ZNF608 WILD-TYPE     45     58     63     41
D1938V1, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        0      2      2
  ZNF608 WILD-TYPE     51     81     75
D1938V2, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED       10      1      2      0
  ZNF608 WILD-TYPE    168    182     99     20
D1938V3, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        4      0      5
  ZNF608 WILD-TYPE     83     80     95
D1938V4, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        2      3      4
  ZNF608 WILD-TYPE     87    157    134
D1938V5, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        6      2      1
  ZNF608 WILD-TYPE    176    131     71
D1938V6, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        1      3      4      5
  ZNF608 WILD-TYPE    111     93     88    181
D1938V7, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF608 MUTATED        1      1      4      1      2      1      3
  ZNF608 WILD-TYPE     59     49     45     39     61    124     96
D1938V8, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        5      2      2      4
  ZNF608 WILD-TYPE    125     76     66    192
D1938V9, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF608 MUTATED        1      2      2      1      2      1      2      0
  ZNF608 WILD-TYPE     39     60     26     79     67     47     41     28
                  vv
clus               CLUS_9
  ZNF608 MUTATED        2
  ZNF608 WILD-TYPE     72
D1938V10, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        2      0      1      1
  ZNF608 WILD-TYPE     31     31     26     18
D1938V11, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        2      0      1      1
  ZNF608 WILD-TYPE     52     10     23     21
D1938V12, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1939) Variable = IDE MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        1      0      2      3
  IDE WILD-TYPE     45     58     62     40
D1939V1, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           2            62
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        0      3      3
  IDE WILD-TYPE     51     80     74
D1939V2, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           0            51
  CLUS_2           3            80
  CLUS_3           3            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        7      5      1      0
  IDE WILD-TYPE    171    178    100     20
D1939V3, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           7           171
  CLUS_2           5           178
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        0      3      4
  IDE WILD-TYPE     87     77     96
D1939V4, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           0            87
  CLUS_2           3            77
  CLUS_3           4            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        2      8      0
  IDE WILD-TYPE     87    152    138
D1939V5, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           2            87
  CLUS_2           8           152
  CLUS_3           0           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        4      3      3
  IDE WILD-TYPE    178    130     69
D1939V6, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           4           178
  CLUS_2           3           130
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        2      2      3      6
  IDE WILD-TYPE    110     94     89    180
D1939V7, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           2           110
  CLUS_2           2            94
  CLUS_3           3            89
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IDE MUTATED        2      2      2      1      1      3      2
  IDE WILD-TYPE     58     48     47     39     62    122     97
D1939V8, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           2            58
  CLUS_2           2            48
  CLUS_3           2            47
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           3           122
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        4      1      1      7
  IDE WILD-TYPE    126     77     67    189
D1939V9, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           4           126
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           7           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IDE MUTATED        2      2      2      2      2      0      0      1      2
  IDE WILD-TYPE     38     60     26     78     67     48     43     27     72
D1939V10, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           2            38
  CLUS_2           2            60
  CLUS_3           2            26
  CLUS_4           2            78
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           1            27
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        0      0      0      0
  IDE WILD-TYPE     33     31     27     19
D1939V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        0      0      0      0
  IDE WILD-TYPE     54     10     24     22
D1939V12, multiclass

Clustering(1940) Variable = BEX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEX5 MUTATED        1      0      0      1
  BEX5 WILD-TYPE     45     58     64     42
D1940V1, multiclass
[1] "Remove cluster labels:" "BEX5 MUTATED"          
clus
  BEX5 MUTATED BEX5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3968 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AY-4071 
"BEX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BEX5 MUTATED        2      0      0
  BEX5 WILD-TYPE     49     83     77
D1940V2, multiclass
[1] "Remove cluster labels:" "BEX5 MUTATED"          
clus
  BEX5 MUTATED BEX5 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3968 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AY-4071 
"BEX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEX5 MUTATED        2      1      4      0
  BEX5 WILD-TYPE    176    182     97     20
D1940V3, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            2            176
  CLUS_2            1            182
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BEX5 MUTATED        2      1      2
  BEX5 WILD-TYPE     85     79     98
D1940V4, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BEX5 MUTATED        1      1      3
  BEX5 WILD-TYPE     88    159    135
D1940V5, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BEX5 MUTATED        4      1      0
  BEX5 WILD-TYPE    178    132     72
D1940V6, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEX5 MUTATED        1      2      3      1
  BEX5 WILD-TYPE    111     94     89    185
D1940V7, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BEX5 MUTATED        0      2      1      0      2      0      2
  BEX5 WILD-TYPE     60     48     48     40     61    125     97
D1940V8, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEX5 MUTATED        3      2      0      2
  BEX5 WILD-TYPE    127     76     68    194
D1940V9, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BEX5 MUTATED        2      1      1      1      2      0      0      0      0
  BEX5 WILD-TYPE     38     61     27     79     67     48     43     28     74
D1940V10, multiclass
        clus
vv       BEX5 MUTATED BEX5 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEX5 MUTATED        1      1      0      0
  BEX5 WILD-TYPE     32     30     27     19
D1940V11, multiclass
[1] "Remove cluster labels:" "BEX5 MUTATED"          
clus
  BEX5 MUTATED BEX5 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306     TCGA-G4-6309 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEX5 MUTATED        1      1      0      0
  BEX5 WILD-TYPE     53      9     24     22
D1940V12, multiclass
[1] "Remove cluster labels:" "BEX5 MUTATED"          
clus
  BEX5 MUTATED BEX5 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6965     TCGA-AF-2687 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6306     TCGA-G4-6309 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" "BEX5 WILD-TYPE" 

Clustering(1941) Variable = AGBL5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        0      0      0      3
  AGBL5 WILD-TYPE     46     58     64     40
D1941V1, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        2      0      1
  AGBL5 WILD-TYPE     49     83     76
D1941V2, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED       12      1      0      0
  AGBL5 WILD-TYPE    166    182    101     20
D1941V3, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        2      1      7
  AGBL5 WILD-TYPE     85     79     93
D1941V4, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        1      4      6
  AGBL5 WILD-TYPE     88    156    132
D1941V5, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        8      2      1
  AGBL5 WILD-TYPE    174    131     71
D1941V6, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        1      6      3      3
  AGBL5 WILD-TYPE    111     90     89    183
D1941V7, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AGBL5 MUTATED        1      0      8      0      0      0      4
  AGBL5 WILD-TYPE     59     50     41     40     63    125     95
D1941V8, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        5      2      1      4
  AGBL5 WILD-TYPE    125     76     67    192
D1941V9, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AGBL5 MUTATED        1      3      1      0      6      0      1      0
  AGBL5 WILD-TYPE     39     59     27     80     63     48     42     28
                 vv
clus              CLUS_9
  AGBL5 MUTATED        0
  AGBL5 WILD-TYPE     74
D1941V10, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        1      0      0      3
  AGBL5 WILD-TYPE     32     31     27     16
D1941V11, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        2      0      2      0
  AGBL5 WILD-TYPE     52     10     22     22
D1941V12, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1942) Variable = LDLR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLR MUTATED        1      0      0      4
  LDLR WILD-TYPE     45     58     64     39
D1942V1, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDLR MUTATED        4      0      1
  LDLR WILD-TYPE     47     83     76
D1942V2, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            4             47
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLR MUTATED        9      3      0      0
  LDLR WILD-TYPE    169    180    101     20
D1942V3, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            9            169
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDLR MUTATED        1      2      4
  LDLR WILD-TYPE     86     78     96
D1942V4, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDLR MUTATED        2      5      3
  LDLR WILD-TYPE     87    155    135
D1942V5, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LDLR MUTATED        2      6      2
  LDLR WILD-TYPE    180    127     70
D1942V6, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            2            180
  CLUS_2            6            127
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLR MUTATED        3      3      1      5
  LDLR WILD-TYPE    109     93     91    181
D1942V7, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LDLR MUTATED        3      1      2      0      2      0      4
  LDLR WILD-TYPE     57     49     47     40     61    125     95
D1942V8, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLR MUTATED        4      2      0      5
  LDLR WILD-TYPE    126     76     68    191
D1942V9, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LDLR MUTATED        2      2      0      1      5      1      0      0      0
  LDLR WILD-TYPE     38     60     28     79     64     47     43     28     74
D1942V10, multiclass
        clus
vv       LDLR MUTATED LDLR WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLR MUTATED        0      0      0      1
  LDLR WILD-TYPE     33     31     27     18
D1942V11, multiclass
[1] "Remove cluster labels:" "LDLR MUTATED"          
clus
  LDLR MUTATED LDLR WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-G5-6641 
"LDLR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LDLR MUTATED        0      0      1      0
  LDLR WILD-TYPE     54     10     23     22
D1942V12, multiclass
[1] "Remove cluster labels:" "LDLR MUTATED"          
clus
  LDLR MUTATED LDLR WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" "LDLR WILD-TYPE" 
    TCGA-G5-6641 
"LDLR WILD-TYPE" 

Clustering(1943) Variable = NUF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUF2 MUTATED        0      0      0      4
  NUF2 WILD-TYPE     46     58     64     39
D1943V1, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NUF2 MUTATED        2      1      1
  NUF2 WILD-TYPE     49     82     76
D1943V2, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUF2 MUTATED       14      1      0      1
  NUF2 WILD-TYPE    164    182    101     19
D1943V3, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1           14            164
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NUF2 MUTATED        5      1      6
  NUF2 WILD-TYPE     82     79     94
D1943V4, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NUF2 MUTATED        2      5      7
  NUF2 WILD-TYPE     87    155    131
D1943V5, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NUF2 MUTATED        9      3      2
  NUF2 WILD-TYPE    173    130     70
D1943V6, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            3            130
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUF2 MUTATED        1      7      4      4
  NUF2 WILD-TYPE    111     89     88    182
D1943V7, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            7             89
  CLUS_3            4             88
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUF2 MUTATED        2      2      6      2      1      0      3
  NUF2 WILD-TYPE     58     48     43     38     62    125     96
D1943V8, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            6             43
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUF2 MUTATED        8      2      1      4
  NUF2 WILD-TYPE    122     76     67    192
D1943V9, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NUF2 MUTATED        3      4      1      0      5      0      2      0      0
  NUF2 WILD-TYPE     37     58     27     80     64     48     41     28     74
D1943V10, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            4             58
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUF2 MUTATED        0      1      0      3
  NUF2 WILD-TYPE     33     30     27     16
D1943V11, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUF2 MUTATED        2      0      2      0
  NUF2 WILD-TYPE     52     10     22     22
D1943V12, multiclass
        clus
vv       NUF2 MUTATED NUF2 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1944) Variable = ZNF521 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF521 MUTATED        5      2      1      4
  ZNF521 WILD-TYPE     41     56     63     39
D1944V1, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              2               56
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF521 MUTATED        5      4      3
  ZNF521 WILD-TYPE     46     79     74
D1944V2, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              4               79
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF521 MUTATED       22      7      5      0
  ZNF521 WILD-TYPE    156    176     96     20
D1944V3, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1             22              156
  CLUS_2              7              176
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF521 MUTATED       13      5      4
  ZNF521 WILD-TYPE     74     75     96
D1944V4, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1             13               74
  CLUS_2              5               75
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF521 MUTATED        4     10     13
  ZNF521 WILD-TYPE     85    150    125
D1944V5, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              4               85
  CLUS_2             10              150
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF521 MUTATED       16      8      3
  ZNF521 WILD-TYPE    166    125     69
D1944V6, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1             16              166
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF521 MUTATED        5      7     12     10
  ZNF521 WILD-TYPE    107     89     80    176
D1944V7, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              7               89
  CLUS_3             12               80
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF521 MUTATED        5      1      9      1      6      5      7
  ZNF521 WILD-TYPE     55     49     40     39     57    120     92
D1944V8, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              1               49
  CLUS_3              9               40
  CLUS_4              1               39
  CLUS_5              6               57
  CLUS_6              5              120
  CLUS_7              7               92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF521 MUTATED        6     12      3     13
  ZNF521 WILD-TYPE    124     66     65    183
D1944V9, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              6              124
  CLUS_2             12               66
  CLUS_3              3               65
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF521 MUTATED        1     11      2      3      9      3      1      1
  ZNF521 WILD-TYPE     39     51     26     77     60     45     42     27
                  vv
clus               CLUS_9
  ZNF521 MUTATED        3
  ZNF521 WILD-TYPE     71
D1944V10, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              1               39
  CLUS_2             11               51
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              9               60
  CLUS_6              3               45
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF521 MUTATED        2      4      2      3
  ZNF521 WILD-TYPE     31     27     25     16
D1944V11, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              4               27
  CLUS_3              2               25
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF521 MUTATED        8      1      2      0
  ZNF521 WILD-TYPE     46      9     22     22
D1944V12, multiclass
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  CLUS_1              8               46
  CLUS_2              1                9
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1945) Variable = OR4N2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N2 MUTATED        1      0      1      0
  OR4N2 WILD-TYPE     45     58     63     43
D1945V1, multiclass
[1] "Remove cluster labels:" "OR4N2 MUTATED"         
clus
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3860 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AY-4071 
"OR4N2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N2 MUTATED        1      1      0
  OR4N2 WILD-TYPE     50     82     77
D1945V2, multiclass
[1] "Remove cluster labels:" "OR4N2 MUTATED"         
clus
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3860 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AY-4071 
"OR4N2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N2 MUTATED        7      1      2      0
  OR4N2 WILD-TYPE    171    182     99     20
D1945V3, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N2 MUTATED        2      1      5
  OR4N2 WILD-TYPE     85     79     95
D1945V4, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N2 MUTATED        2      4      2
  OR4N2 WILD-TYPE     87    156    136
D1945V5, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N2 MUTATED        2      4      2
  OR4N2 WILD-TYPE    180    129     70
D1945V6, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N2 MUTATED        1      6      1      2
  OR4N2 WILD-TYPE    111     90     91    184
D1945V7, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             6              90
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4N2 MUTATED        1      2      4      1      0      1      1
  OR4N2 WILD-TYPE     59     48     45     39     63    124     98
D1945V8, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N2 MUTATED        5      0      1      4
  OR4N2 WILD-TYPE    125     78     67    192
D1945V9, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4N2 MUTATED        1      0      0      0      5      0      2      0
  OR4N2 WILD-TYPE     39     62     28     80     64     48     41     28
                 vv
clus              CLUS_9
  OR4N2 MUTATED        2
  OR4N2 WILD-TYPE     72
D1945V10, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N2 MUTATED        0      0      0      2
  OR4N2 WILD-TYPE     33     31     27     17
D1945V11, multiclass
[1] "Remove cluster labels:" "OR4N2 MUTATED"         
clus
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N2 MUTATED        1      0      1      0
  OR4N2 WILD-TYPE     53     10     23     22
D1945V12, multiclass
[1] "Remove cluster labels:" "OR4N2 MUTATED"         
clus
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 

Clustering(1946) Variable = CELSR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED        2      1      1      1
  CELSR1 WILD-TYPE     44     57     63     42
D1946V1, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED        3      0      2
  CELSR1 WILD-TYPE     48     83     75
D1946V2, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              0               83
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED       17      3      3      0
  CELSR1 WILD-TYPE    161    180     98     20
D1946V3, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             17              161
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED        4      2     11
  CELSR1 WILD-TYPE     83     78     89
D1946V4, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              2               78
  CLUS_3             11               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED        3      6     10
  CELSR1 WILD-TYPE     86    154    128
D1946V5, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              6              154
  CLUS_3             10              128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED       11      5      3
  CELSR1 WILD-TYPE    171    128     69
D1946V6, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             11              171
  CLUS_2              5              128
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED        2      9      5      7
  CELSR1 WILD-TYPE    110     87     87    179
D1946V7, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              9               87
  CLUS_3              5               87
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CELSR1 MUTATED        2      1     12      1      0      3      4
  CELSR1 WILD-TYPE     58     49     37     39     63    122     95
D1946V8, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3             12               37
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED       10      2      3      7
  CELSR1 WILD-TYPE    120     76     65    189
D1946V9, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              2               76
  CLUS_3              3               65
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CELSR1 MUTATED        1      6      0      0      6      2      4      1
  CELSR1 WILD-TYPE     39     56     28     80     63     46     39     27
                  vv
clus               CLUS_9
  CELSR1 MUTATED        2
  CELSR1 WILD-TYPE     72
D1946V10, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              6               56
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              2               46
  CLUS_7              4               39
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED        1      0      2      5
  CELSR1 WILD-TYPE     32     31     25     14
D1946V11, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED        3      0      4      1
  CELSR1 WILD-TYPE     51     10     20     21
D1946V12, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1947) Variable = SDAD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        0      0      0      1
  SDAD1 WILD-TYPE     46     58     64     42
D1947V1, multiclass
[1] "Remove cluster labels:" "SDAD1 MUTATED"         
clus
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        1      0      0
  SDAD1 WILD-TYPE     50     83     77
D1947V2, multiclass
[1] "Remove cluster labels:" "SDAD1 MUTATED"         
clus
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00O 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"SDAD1 WILD-TYPE" "SDAD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        7      1      0      0
  SDAD1 WILD-TYPE    171    182    101     20
D1947V3, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        5      0      2
  SDAD1 WILD-TYPE     82     80     98
D1947V4, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        1      2      4
  SDAD1 WILD-TYPE     88    158    134
D1947V5, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        3      2      2
  SDAD1 WILD-TYPE    179    131     70
D1947V6, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        1      4      2      1
  SDAD1 WILD-TYPE    111     92     90    185
D1947V7, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SDAD1 MUTATED        0      2      3      0      2      0      1
  SDAD1 WILD-TYPE     60     48     46     40     61    125     98
D1947V8, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        2      4      0      1
  SDAD1 WILD-TYPE    128     74     68    195
D1947V9, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SDAD1 MUTATED        2      2      0      0      1      1      0      0
  SDAD1 WILD-TYPE     38     60     28     80     68     47     43     28
                 vv
clus              CLUS_9
  SDAD1 MUTATED        1
  SDAD1 WILD-TYPE     73
D1947V10, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        1      1      0      1
  SDAD1 WILD-TYPE     32     30     27     18
D1947V11, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        2      0      0      1
  SDAD1 WILD-TYPE     52     10     24     21
D1947V12, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1948) Variable = GTDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTDC1 MUTATED        1      1      0      2
  GTDC1 WILD-TYPE     45     57     64     41
D1948V1, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTDC1 MUTATED        3      1      0
  GTDC1 WILD-TYPE     48     82     77
D1948V2, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTDC1 MUTATED        8      2      0      0
  GTDC1 WILD-TYPE    170    181    101     20
D1948V3, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTDC1 MUTATED        3      1      2
  GTDC1 WILD-TYPE     84     79     98
D1948V4, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTDC1 MUTATED        1      2      6
  GTDC1 WILD-TYPE     88    158    132
D1948V5, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GTDC1 MUTATED        7      2      0
  GTDC1 WILD-TYPE    175    131     72
D1948V6, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTDC1 MUTATED        1      1      4      4
  GTDC1 WILD-TYPE    111     95     88    182
D1948V7, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GTDC1 MUTATED        1      0      4      0      1      1      3
  GTDC1 WILD-TYPE     59     50     45     40     62    124     96
D1948V8, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTDC1 MUTATED        2      2      1      4
  GTDC1 WILD-TYPE    128     76     67    192
D1948V9, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GTDC1 MUTATED        0      3      0      0      4      1      0      0
  GTDC1 WILD-TYPE     40     59     28     80     65     47     43     28
                 vv
clus              CLUS_9
  GTDC1 MUTATED        1
  GTDC1 WILD-TYPE     73
D1948V10, multiclass
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTDC1 MUTATED        0      0      0      2
  GTDC1 WILD-TYPE     33     31     27     17
D1948V11, multiclass
[1] "Remove cluster labels:" "GTDC1 MUTATED"         
clus
  GTDC1 MUTATED GTDC1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTDC1 MUTATED        0      0      1      1
  GTDC1 WILD-TYPE     54     10     23     21
D1948V12, multiclass
[1] "Remove cluster labels:" "GTDC1 MUTATED"         
clus
  GTDC1 MUTATED GTDC1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6600      TCGA-AZ-6601 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 

Clustering(1949) Variable = PLCG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        0      1      0      2
  PLCG1 WILD-TYPE     46     57     64     41
D1949V1, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        2      0      1
  PLCG1 WILD-TYPE     49     83     76
D1949V2, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED       11      4      4      0
  PLCG1 WILD-TYPE    167    179     97     20
D1949V3, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             4             179
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        5      5      5
  PLCG1 WILD-TYPE     82     75     95
D1949V4, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             5              75
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED        4      3     10
  PLCG1 WILD-TYPE     85    157    128
D1949V5, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCG1 MUTATED       10      4      3
  PLCG1 WILD-TYPE    172    129     69
D1949V6, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        4      7      4      4
  PLCG1 WILD-TYPE    108     89     88    182
D1949V7, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PLCG1 MUTATED        2      1      8      1      3      1      3
  PLCG1 WILD-TYPE     58     49     41     39     60    124     96
D1949V8, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             8              41
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        6      6      1      5
  PLCG1 WILD-TYPE    124     72     67    191
D1949V9, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PLCG1 MUTATED        1      6      0      0      7      2      0      0
  PLCG1 WILD-TYPE     39     56     28     80     62     46     43     28
                 vv
clus              CLUS_9
  PLCG1 MUTATED        2
  PLCG1 WILD-TYPE     72
D1949V10, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             7              62
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        1      2      1      1
  PLCG1 WILD-TYPE     32     29     26     18
D1949V11, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCG1 MUTATED        2      1      1      1
  PLCG1 WILD-TYPE     52      9     23     21
D1949V12, multiclass
        clus
vv       PLCG1 MUTATED PLCG1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1950) Variable = SMC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC4 MUTATED        5      1      1      4
  SMC4 WILD-TYPE     41     57     63     39
D1950V1, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC4 MUTATED        6      3      2
  SMC4 WILD-TYPE     45     80     75
D1950V2, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC4 MUTATED       17      2      0      0
  SMC4 WILD-TYPE    161    181    101     20
D1950V3, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC4 MUTATED        3      1      4
  SMC4 WILD-TYPE     84     79     96
D1950V4, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC4 MUTATED        2      4      7
  SMC4 WILD-TYPE     87    156    131
D1950V5, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC4 MUTATED        6      6      1
  SMC4 WILD-TYPE    176    127     71
D1950V6, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC4 MUTATED        1      5      1     13
  SMC4 WILD-TYPE    111     91     91    173
D1950V7, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4           13            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMC4 MUTATED        2      2      4      0      0      3      9
  SMC4 WILD-TYPE     58     48     45     40     63    122     90
D1950V8, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            3            122
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC4 MUTATED        4      2      2     10
  SMC4 WILD-TYPE    126     76     66    186
D1950V9, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SMC4 MUTATED        0      1      1      2      7      2      0      2      3
  SMC4 WILD-TYPE     40     61     27     78     62     46     43     26     71
D1950V10, multiclass
        clus
vv       SMC4 MUTATED SMC4 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            7             62
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            3             71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC4 MUTATED        1      0      0      1
  SMC4 WILD-TYPE     32     31     27     18
D1950V11, multiclass
[1] "Remove cluster labels:" "SMC4 MUTATED"          
clus
  SMC4 MUTATED SMC4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC4 MUTATED        1      0      0      1
  SMC4 WILD-TYPE     53     10     24     21
D1950V12, multiclass
[1] "Remove cluster labels:" "SMC4 MUTATED"          
clus
  SMC4 MUTATED SMC4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" "SMC4 WILD-TYPE" 

Clustering(1951) Variable = NDUFV2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        0      0      0      0
  NDUFV2 WILD-TYPE     46     58     64     43
D1951V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        0      0      0
  NDUFV2 WILD-TYPE     51     83     77
D1951V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        2      0      0      1
  NDUFV2 WILD-TYPE    176    183    101     19
D1951V3, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        1      1      1
  NDUFV2 WILD-TYPE     86     79     99
D1951V4, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        0      1      1
  NDUFV2 WILD-TYPE     89    159    137
D1951V5, multiclass
[1] "Remove cluster labels:" "NDUFV2 MUTATED"        
clus
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655       TCGA-AA-3664 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681       TCGA-AA-3688 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697       TCGA-AA-3710 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715       TCGA-AA-3811 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848       TCGA-AA-3850 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856       TCGA-AA-3861 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869       TCGA-AA-3872 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3955 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900       TCGA-AD-6548 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965       TCGA-AF-2689 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654       TCGA-AF-6136 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574       TCGA-AG-3578 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731       TCGA-AG-3742 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3885 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036       TCGA-AH-6544 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6928 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G5-6641 
"NDUFV2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NDUFV2 MUTATED        1      1      0
  NDUFV2 WILD-TYPE    181    132     72
D1951V6, multiclass
[1] "Remove cluster labels:" "NDUFV2 MUTATED"        
clus
  NDUFV2 MUTATED NDUFV2 WILD-TYPE 
               2              385 
      TCGA-A6-2671       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-A6-5656       TCGA-A6-5657 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-5659       TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-5664       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3514       TCGA-AA-3517       TCGA-AA-3519 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3520       TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3525 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531       TCGA-AA-3532 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3534       TCGA-AA-3548       TCGA-AA-3552       TCGA-AA-3553 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3554       TCGA-AA-3555       TCGA-AA-3558       TCGA-AA-3560 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3655       TCGA-AA-3664 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3678       TCGA-AA-3681       TCGA-AA-3688 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3697       TCGA-AA-3710 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3712       TCGA-AA-3713       TCGA-AA-3715       TCGA-AA-3811 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3848       TCGA-AA-3850 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3856       TCGA-AA-3861 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3869       TCGA-AA-3872 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3955 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3982       TCGA-AA-3986       TCGA-AA-3989 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00E       TCGA-AA-A00F 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A022       TCGA-AA-A024 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A02K       TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AD-5900       TCGA-AD-6548 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AD-6889       TCGA-AD-6899       TCGA-AD-6965       TCGA-AF-2689 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AF-5654       TCGA-AF-6136 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3574       TCGA-AG-3578 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3609 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3727       TCGA-AG-3731       TCGA-AG-3742 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3885 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01W 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02G 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A036       TCGA-AH-6544 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5407       TCGA-AZ-6598       TCGA-AZ-6599 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608       TCGA-CA-5254 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797       TCGA-CA-6715 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718       TCGA-CA-6719 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CK-5914       TCGA-CK-5916       TCGA-CK-6746 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5918 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746       TCGA-CM-4747 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344       TCGA-CM-5348 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861       TCGA-CM-5862 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868       TCGA-CM-6161 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164       TCGA-CM-6165 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168       TCGA-CM-6169 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172       TCGA-CM-6674 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5538       TCGA-D5-5539 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-5540       TCGA-D5-5541       TCGA-D5-6529       TCGA-D5-6532 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6535       TCGA-D5-6536 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6537       TCGA-D5-6538       TCGA-D5-6539       TCGA-D5-6540 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920       TCGA-D5-6922 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926       TCGA-D5-6928 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-DC-5337 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D4 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA       TCGA-DM-A1HB 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DM-A28G       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" "NDUFV2 WILD-TYPE" 
      TCGA-G5-6641 
"NDUFV2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        1      1      1      0
  NDUFV2 WILD-TYPE    111     95     91    186
D1951V7, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NDUFV2 MUTATED        1      0      2      0      0      0      0
  NDUFV2 WILD-TYPE     59     50     47     40     63    125     99
D1951V8, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        2      0      0      1
  NDUFV2 WILD-TYPE    128     78     68    195
D1951V9, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NDUFV2 MUTATED        1      1      0      0      0      1      0      0
  NDUFV2 WILD-TYPE     39     61     28     80     69     47     43     28
                  vv
clus               CLUS_9
  NDUFV2 MUTATED        0
  NDUFV2 WILD-TYPE     74
D1951V10, multiclass
        clus
vv       NDUFV2 MUTATED NDUFV2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        0      0      0      0
  NDUFV2 WILD-TYPE     33     31     27     19
D1951V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDUFV2 MUTATED        0      0      0      0
  NDUFV2 WILD-TYPE     54     10     24     22
D1951V12, multiclass

Clustering(1952) Variable = SYT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        0      0      0      3
  SYT2 WILD-TYPE     46     58     64     40
D1952V1, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        1      1      1
  SYT2 WILD-TYPE     50     82     76
D1952V2, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        6      2      1      0
  SYT2 WILD-TYPE    172    181    100     20
D1952V3, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        1      0      5
  SYT2 WILD-TYPE     86     80     95
D1952V4, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        0      5      3
  SYT2 WILD-TYPE     89    155    135
D1952V5, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        4      4      0
  SYT2 WILD-TYPE    178    129     72
D1952V6, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        0      3      2      4
  SYT2 WILD-TYPE    112     93     90    182
D1952V7, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYT2 MUTATED        1      2      3      0      0      1      2
  SYT2 WILD-TYPE     59     48     46     40     63    124     97
D1952V8, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        5      0      0      3
  SYT2 WILD-TYPE    125     78     68    193
D1952V9, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SYT2 MUTATED        0      0      3      2      3      0      0      0      0
  SYT2 WILD-TYPE     40     62     25     78     66     48     43     28     74
D1952V10, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        0      0      0      1
  SYT2 WILD-TYPE     33     31     27     18
D1952V11, multiclass
[1] "Remove cluster labels:" "SYT2 MUTATED"          
clus
  SYT2 MUTATED SYT2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-G5-6641 
"SYT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        0      0      1      0
  SYT2 WILD-TYPE     54     10     23     22
D1952V12, multiclass
[1] "Remove cluster labels:" "SYT2 MUTATED"          
clus
  SYT2 MUTATED SYT2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-G5-6641 
"SYT2 WILD-TYPE" 

Clustering(1953) Variable = KIT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED        2      1      0      4
  KIT WILD-TYPE     44     57     64     39
D1953V1, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1           2            44
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           4            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED        2      3      2
  KIT WILD-TYPE     49     80     75
D1953V2, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1           2            49
  CLUS_2           3            80
  CLUS_3           2            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       50     38     20      4
  KIT WILD-TYPE    128    145     81     16
D1953V3, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          50           128
  CLUS_2          38           145
  CLUS_3          20            81
  CLUS_4           4            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       33     34     39
  KIT WILD-TYPE     54     46     61
D1953V4, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          33            54
  CLUS_2          34            46
  CLUS_3          39            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       14     40     44
  KIT WILD-TYPE     75    120     94
D1953V5, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          14            75
  CLUS_2          40           120
  CLUS_3          44            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       53     30     15
  KIT WILD-TYPE    129    103     57
D1953V6, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          53           129
  CLUS_2          30           103
  CLUS_3          15            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       46     32     28      6
  KIT WILD-TYPE     66     64     64    180
D1953V7, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          46            66
  CLUS_2          32            64
  CLUS_3          28            64
  CLUS_4           6           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIT MUTATED       28     20     25     12     20      3      4
  KIT WILD-TYPE     32     30     24     28     43    122     95
D1953V8, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          28            32
  CLUS_2          20            30
  CLUS_3          25            24
  CLUS_4          12            28
  CLUS_5          20            43
  CLUS_6           3           122
  CLUS_7           4            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       65     23     12     11
  KIT WILD-TYPE     65     55     56    185
D1953V9, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          65            65
  CLUS_2          23            55
  CLUS_3          12            56
  CLUS_4          11           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KIT MUTATED       20     22      9     21     13     10     14      0      2
  KIT WILD-TYPE     20     40     19     59     56     38     29     28     72
D1953V10, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          20            20
  CLUS_2          22            40
  CLUS_3           9            19
  CLUS_4          21            59
  CLUS_5          13            56
  CLUS_6          10            38
  CLUS_7          14            29
  CLUS_8           0            28
  CLUS_9           2            72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED        9      9      8      9
  KIT WILD-TYPE     24     22     19     10
D1953V11, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1           9            24
  CLUS_2           9            22
  CLUS_3           8            19
  CLUS_4           9            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       16      2      9      8
  KIT WILD-TYPE     38      8     15     14
D1953V12, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          16            38
  CLUS_2           2             8
  CLUS_3           9            15
  CLUS_4           8            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1954) Variable = ERMP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERMP1 MUTATED        3      0      1      2
  ERMP1 WILD-TYPE     43     58     63     41
D1954V1, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERMP1 MUTATED        1      3      2
  ERMP1 WILD-TYPE     50     80     75
D1954V2, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERMP1 MUTATED        9      2      0      0
  ERMP1 WILD-TYPE    169    181    101     20
D1954V3, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERMP1 MUTATED        4      0      1
  ERMP1 WILD-TYPE     83     80     99
D1954V4, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERMP1 MUTATED        1      3      5
  ERMP1 WILD-TYPE     88    157    133
D1954V5, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERMP1 MUTATED        4      3      2
  ERMP1 WILD-TYPE    178    130     70
D1954V6, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERMP1 MUTATED        1      2      3      5
  ERMP1 WILD-TYPE    111     94     89    181
D1954V7, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERMP1 MUTATED        1      1      3      0      1      2      3
  ERMP1 WILD-TYPE     59     49     46     40     62    123     96
D1954V8, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERMP1 MUTATED        3      1      0      7
  ERMP1 WILD-TYPE    127     77     68    189
D1954V9, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ERMP1 MUTATED        0      3      1      2      3      0      0      0
  ERMP1 WILD-TYPE     40     59     27     78     66     48     43     28
                 vv
clus              CLUS_9
  ERMP1 MUTATED        2
  ERMP1 WILD-TYPE     72
D1954V10, multiclass
        clus
vv       ERMP1 MUTATED ERMP1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERMP1 MUTATED        0      0      1      0
  ERMP1 WILD-TYPE     33     31     26     19
D1954V11, multiclass
[1] "Remove cluster labels:" "ERMP1 MUTATED"         
clus
  ERMP1 MUTATED ERMP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-G5-6641 
"ERMP1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERMP1 MUTATED        0      0      1      0
  ERMP1 WILD-TYPE     54     10     23     22
D1954V12, multiclass
[1] "Remove cluster labels:" "ERMP1 MUTATED"         
clus
  ERMP1 MUTATED ERMP1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" "ERMP1 WILD-TYPE" 
     TCGA-G5-6641 
"ERMP1 WILD-TYPE" 

Clustering(1955) Variable = NOV MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOV MUTATED        0      0      0      2
  NOV WILD-TYPE     46     58     64     41
D1955V1, multiclass
[1] "Remove cluster labels:" "NOV MUTATED"           
clus
  NOV MUTATED NOV WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NOV MUTATED        0      1      1
  NOV WILD-TYPE     51     82     76
D1955V2, multiclass
[1] "Remove cluster labels:" "NOV MUTATED"           
clus
  NOV MUTATED NOV WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOV MUTATED        4      4      2      0
  NOV WILD-TYPE    174    179     99     20
D1955V3, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           4           174
  CLUS_2           4           179
  CLUS_3           2            99
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NOV MUTATED        1      5      2
  NOV WILD-TYPE     86     75     98
D1955V4, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           1            86
  CLUS_2           5            75
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NOV MUTATED        0      6      3
  NOV WILD-TYPE     89    154    135
D1955V5, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           0            89
  CLUS_2           6           154
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NOV MUTATED        3      6      0
  NOV WILD-TYPE    179    127     72
D1955V6, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           3           179
  CLUS_2           6           127
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOV MUTATED        6      1      1      2
  NOV WILD-TYPE    106     95     91    184
D1955V7, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           6           106
  CLUS_2           1            95
  CLUS_3           1            91
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOV MUTATED        4      2      1      0      2      0      1
  NOV WILD-TYPE     56     48     48     40     61    125     98
D1955V8, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           4            56
  CLUS_2           2            48
  CLUS_3           1            48
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOV MUTATED        4      2      2      2
  NOV WILD-TYPE    126     76     66    194
D1955V9, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           4           126
  CLUS_2           2            76
  CLUS_3           2            66
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NOV MUTATED        1      1      2      1      1      1      3      0      0
  NOV WILD-TYPE     39     61     26     79     68     47     40     28     74
D1955V10, multiclass
        clus
vv       NOV MUTATED NOV WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           2            26
  CLUS_4           1            79
  CLUS_5           1            68
  CLUS_6           1            47
  CLUS_7           3            40
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOV MUTATED        0      0      0      1
  NOV WILD-TYPE     33     31     27     18
D1955V11, multiclass
[1] "Remove cluster labels:" "NOV MUTATED"           
clus
  NOV MUTATED NOV WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DM-A0XD    TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-EI-6506    TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-F4-6570    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-F4-6809    TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-F5-6811    TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-G4-6309    TCGA-G4-6625    TCGA-G5-6235    TCGA-G5-6641 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOV MUTATED        1      0      0      0
  NOV WILD-TYPE     53     10     24     22
D1955V12, multiclass
[1] "Remove cluster labels:" "NOV MUTATED"           
clus
  NOV MUTATED NOV WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DM-A0XD    TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-EI-6506    TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-F4-6570    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-F4-6809    TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-F5-6811    TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 
   TCGA-G4-6309    TCGA-G4-6625    TCGA-G5-6235    TCGA-G5-6641 
"NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" "NOV WILD-TYPE" 

Clustering(1956) Variable = MYOG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOG MUTATED        0      0      0      1
  MYOG WILD-TYPE     46     58     64     42
D1956V1, multiclass
[1] "Remove cluster labels:" "MYOG MUTATED"          
clus
  MYOG MUTATED MYOG WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOG MUTATED        0      0      1
  MYOG WILD-TYPE     51     83     76
D1956V2, multiclass
[1] "Remove cluster labels:" "MYOG MUTATED"          
clus
  MYOG MUTATED MYOG WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOG MUTATED        5      0      1      0
  MYOG WILD-TYPE    173    183    100     20
D1956V3, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            5            173
  CLUS_2            0            183
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOG MUTATED        2      0      3
  MYOG WILD-TYPE     85     80     97
D1956V4, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOG MUTATED        2      2      1
  MYOG WILD-TYPE     87    158    137
D1956V5, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOG MUTATED        1      3      1
  MYOG WILD-TYPE    181    130     71
D1956V6, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOG MUTATED        0      1      3      2
  MYOG WILD-TYPE    112     95     89    184
D1956V7, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYOG MUTATED        1      0      2      1      1      0      1
  MYOG WILD-TYPE     59     50     47     39     62    125     98
D1956V8, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOG MUTATED        3      1      0      2
  MYOG WILD-TYPE    127     77     68    194
D1956V9, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MYOG MUTATED        1      1      0      1      1      0      1      0      1
  MYOG WILD-TYPE     39     61     28     79     68     48     42     28     73
D1956V10, multiclass
        clus
vv       MYOG MUTATED MYOG WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOG MUTATED        0      0      0      1
  MYOG WILD-TYPE     33     31     27     18
D1956V11, multiclass
[1] "Remove cluster labels:" "MYOG MUTATED"          
clus
  MYOG MUTATED MYOG WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-G5-6641 
"MYOG WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOG MUTATED        1      0      0      0
  MYOG WILD-TYPE     53     10     24     22
D1956V12, multiclass
[1] "Remove cluster labels:" "MYOG MUTATED"          
clus
  MYOG MUTATED MYOG WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" "MYOG WILD-TYPE" 
    TCGA-G5-6641 
"MYOG WILD-TYPE" 

Clustering(1957) Variable = NTN4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTN4 MUTATED        0      1      1      2
  NTN4 WILD-TYPE     46     57     63     41
D1957V1, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NTN4 MUTATED        0      2      2
  NTN4 WILD-TYPE     51     81     75
D1957V2, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTN4 MUTATED        7      0      2      0
  NTN4 WILD-TYPE    171    183     99     20
D1957V3, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            0            183
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NTN4 MUTATED        0      0      4
  NTN4 WILD-TYPE     87     80     96
D1957V4, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NTN4 MUTATED        1      7      1
  NTN4 WILD-TYPE     88    153    137
D1957V5, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            7            153
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NTN4 MUTATED        2      7      0
  NTN4 WILD-TYPE    180    126     72
D1957V6, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            7            126
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTN4 MUTATED        1      3      1      4
  NTN4 WILD-TYPE    111     93     91    182
D1957V7, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NTN4 MUTATED        1      1      2      0      0      2      3
  NTN4 WILD-TYPE     59     49     47     40     63    123     96
D1957V8, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTN4 MUTATED        3      0      0      5
  NTN4 WILD-TYPE    127     78     68    191
D1957V9, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NTN4 MUTATED        2      0      1      0      4      1      0      0      0
  NTN4 WILD-TYPE     38     62     27     80     65     47     43     28     74
D1957V10, multiclass
        clus
vv       NTN4 MUTATED NTN4 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTN4 MUTATED        0      0      0      1
  NTN4 WILD-TYPE     33     31     27     18
D1957V11, multiclass
[1] "Remove cluster labels:" "NTN4 MUTATED"          
clus
  NTN4 MUTATED NTN4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-G5-6641 
"NTN4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTN4 MUTATED        0      0      1      0
  NTN4 WILD-TYPE     54     10     23     22
D1957V12, multiclass
[1] "Remove cluster labels:" "NTN4 MUTATED"          
clus
  NTN4 MUTATED NTN4 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" "NTN4 WILD-TYPE" 
    TCGA-G5-6641 
"NTN4 WILD-TYPE" 

Clustering(1958) Variable = XRN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        4      1      1      3
  XRN1 WILD-TYPE     42     57     63     40
D1958V1, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XRN1 MUTATED        4      3      2
  XRN1 WILD-TYPE     47     80     75
D1958V2, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            3             80
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED       15      4      5      0
  XRN1 WILD-TYPE    163    179     96     20
D1958V3, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            4            179
  CLUS_3            5             96
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XRN1 MUTATED        5      3      8
  XRN1 WILD-TYPE     82     77     92
D1958V4, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            3             77
  CLUS_3            8             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XRN1 MUTATED        1      9      7
  XRN1 WILD-TYPE     88    151    131
D1958V5, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            9            151
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XRN1 MUTATED        9      7      1
  XRN1 WILD-TYPE    173    126     71
D1958V6, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            9            173
  CLUS_2            7            126
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        4      8      4      8
  XRN1 WILD-TYPE    108     88     88    178
D1958V7, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            8             88
  CLUS_3            4             88
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XRN1 MUTATED        4      3      5      1      2      3      6
  XRN1 WILD-TYPE     56     47     44     39     61    122     93
D1958V8, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            3             47
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            3            122
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        9      2      2     10
  XRN1 WILD-TYPE    121     76     66    186
D1958V9, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            9            121
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  XRN1 MUTATED        4      2      2      7      5      0      2      0      1
  XRN1 WILD-TYPE     36     60     26     73     64     48     41     28     73
D1958V10, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            4             36
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            7             73
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        0      1      2      3
  XRN1 WILD-TYPE     33     30     25     16
D1958V11, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            2             25
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        2      0      3      1
  XRN1 WILD-TYPE     52     10     21     21
D1958V12, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            3             21
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1959) Variable = FAM175A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM175A MUTATED        0      0      0      3
  FAM175A WILD-TYPE     46     58     64     40
D1959V1, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               0                46
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM175A MUTATED        2      1      0
  FAM175A WILD-TYPE     49     82     77
D1959V2, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM175A MUTATED        7      1      0      0
  FAM175A WILD-TYPE    171    182    101     20
D1959V3, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM175A MUTATED        2      1      2
  FAM175A WILD-TYPE     85     79     98
D1959V4, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM175A MUTATED        0      5      3
  FAM175A WILD-TYPE     89    155    135
D1959V5, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM175A MUTATED        3      4      1
  FAM175A WILD-TYPE    179    129     71
D1959V6, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               3               179
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM175A MUTATED        1      3      1      3
  FAM175A WILD-TYPE    111     93     91    183
D1959V7, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               1               111
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM175A MUTATED        2      1      2      0      0      0      3
  FAM175A WILD-TYPE     58     49     47     40     63    125     96
D1959V8, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM175A MUTATED        4      0      1      1
  FAM175A WILD-TYPE    126     78     67    195
D1959V9, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM175A MUTATED        0      0      1      1      1      1      2      0
  FAM175A WILD-TYPE     40     62     27     79     68     47     41     28
                   vv
clus                CLUS_9
  FAM175A MUTATED        0
  FAM175A WILD-TYPE     74
D1959V10, multiclass
        clus
vv       FAM175A MUTATED FAM175A WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM175A MUTATED        0      0      0      1
  FAM175A WILD-TYPE     33     31     27     18
D1959V11, multiclass
[1] "Remove cluster labels:" "FAM175A MUTATED"       
clus
  FAM175A MUTATED FAM175A WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-G5-6641 
"FAM175A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM175A MUTATED        0      0      1      0
  FAM175A WILD-TYPE     54     10     23     22
D1959V12, multiclass
[1] "Remove cluster labels:" "FAM175A MUTATED"       
clus
  FAM175A MUTATED FAM175A WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" "FAM175A WILD-TYPE" 
       TCGA-G5-6641 
"FAM175A WILD-TYPE" 

Clustering(1960) Variable = CSF3R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        1      0      1      4
  CSF3R WILD-TYPE     45     58     63     39
D1960V1, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        4      2      0
  CSF3R WILD-TYPE     47     81     77
D1960V2, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED       13      1      1      0
  CSF3R WILD-TYPE    165    182    100     20
D1960V3, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1            13             165
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        1      0      7
  CSF3R WILD-TYPE     86     80     93
D1960V4, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        5      4      4
  CSF3R WILD-TYPE     84    156    134
D1960V5, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             5              84
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        8      4      1
  CSF3R WILD-TYPE    174    129     71
D1960V6, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             8             174
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        0      5      4      6
  CSF3R WILD-TYPE    112     91     88    180
D1960V7, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0             112
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSF3R MUTATED        0      0      8      0      0      0      7
  CSF3R WILD-TYPE     60     50     41     40     63    125     92
D1960V8, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             8              41
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        7      0      0      7
  CSF3R WILD-TYPE    123     78     68    189
D1960V9, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSF3R MUTATED        0      2      1      0     10      0      0      1
  CSF3R WILD-TYPE     40     60     27     80     59     48     43     27
                 vv
clus              CLUS_9
  CSF3R MUTATED        0
  CSF3R WILD-TYPE     74
D1960V10, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        0      0      0      3
  CSF3R WILD-TYPE     33     31     27     16
D1960V11, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        2      0      1      0
  CSF3R WILD-TYPE     52     10     23     22
D1960V12, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1961) Variable = RAB22A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB22A MUTATED        1      0      0      1
  RAB22A WILD-TYPE     45     58     64     42
D1961V1, multiclass
[1] "Remove cluster labels:" "RAB22A MUTATED"        
clus
  RAB22A MUTATED RAB22A WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AY-4071 
"RAB22A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB22A MUTATED        1      1      0
  RAB22A WILD-TYPE     50     82     77
D1961V2, multiclass
[1] "Remove cluster labels:" "RAB22A MUTATED"        
clus
  RAB22A MUTATED RAB22A WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AY-4071 
"RAB22A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB22A MUTATED        3      0      0      0
  RAB22A WILD-TYPE    175    183    101     20
D1961V3, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              3              175
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB22A MUTATED        1      0      0
  RAB22A WILD-TYPE     86     80    100
D1961V4, multiclass
[1] "Remove cluster labels:" "RAB22A MUTATED"        
clus
  RAB22A MUTATED RAB22A WILD-TYPE 
               1              266 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3492 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510       TCGA-AA-3511 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662       TCGA-AA-3663 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713       TCGA-AD-5900 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889       TCGA-AD-6890 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901       TCGA-AD-6963 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742       TCGA-AG-A01W 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A28H       TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G4-6317       TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G4-6588       TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G5-6235       TCGA-G5-6641 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB22A MUTATED        0      1      2
  RAB22A WILD-TYPE     89    159    136
D1961V5, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB22A MUTATED        2      1      0
  RAB22A WILD-TYPE    180    132     72
D1961V6, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB22A MUTATED        0      0      1      2
  RAB22A WILD-TYPE    112     96     91    184
D1961V7, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAB22A MUTATED        0      0      1      0      0      0      2
  RAB22A WILD-TYPE     60     50     48     40     63    125     97
D1961V8, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB22A MUTATED        0      1      0      2
  RAB22A WILD-TYPE    130     77     68    194
D1961V9, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAB22A MUTATED        0      1      1      0      1      0      0      0
  RAB22A WILD-TYPE     40     61     27     80     68     48     43     28
                  vv
clus               CLUS_9
  RAB22A MUTATED        0
  RAB22A WILD-TYPE     74
D1961V10, multiclass
        clus
vv       RAB22A MUTATED RAB22A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB22A MUTATED        1      0      0      0
  RAB22A WILD-TYPE     32     31     27     19
D1961V11, multiclass
[1] "Remove cluster labels:" "RAB22A MUTATED"        
clus
  RAB22A MUTATED RAB22A WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G5-6641 
"RAB22A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB22A MUTATED        1      0      0      0
  RAB22A WILD-TYPE     53     10     24     22
D1961V12, multiclass
[1] "Remove cluster labels:" "RAB22A MUTATED"        
clus
  RAB22A MUTATED RAB22A WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" "RAB22A WILD-TYPE" 
      TCGA-G5-6641 
"RAB22A WILD-TYPE" 

Clustering(1962) Variable = SAMD4A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD4A MUTATED        0      0      2      2
  SAMD4A WILD-TYPE     46     58     62     41
D1962V1, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD4A MUTATED        1      1      2
  SAMD4A WILD-TYPE     50     82     75
D1962V2, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD4A MUTATED        9      1      1      0
  SAMD4A WILD-TYPE    169    182    100     20
D1962V3, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD4A MUTATED        3      0      2
  SAMD4A WILD-TYPE     84     80     98
D1962V4, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD4A MUTATED        3      2      3
  SAMD4A WILD-TYPE     86    158    135
D1962V5, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              3               86
  CLUS_2              2              158
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD4A MUTATED        5      3      0
  SAMD4A WILD-TYPE    177    130     72
D1962V6, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              5              177
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD4A MUTATED        0      2      4      5
  SAMD4A WILD-TYPE    112     94     88    181
D1962V7, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAMD4A MUTATED        1      1      4      0      1      2      2
  SAMD4A WILD-TYPE     59     49     45     40     62    123     97
D1962V8, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD4A MUTATED        3      2      0      6
  SAMD4A WILD-TYPE    127     76     68    190
D1962V9, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SAMD4A MUTATED        0      3      0      1      5      0      0      1
  SAMD4A WILD-TYPE     40     59     28     79     64     48     43     27
                  vv
clus               CLUS_9
  SAMD4A MUTATED        1
  SAMD4A WILD-TYPE     73
D1962V10, multiclass
        clus
vv       SAMD4A MUTATED SAMD4A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD4A MUTATED        0      0      0      0
  SAMD4A WILD-TYPE     33     31     27     19
D1962V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD4A MUTATED        0      0      0      0
  SAMD4A WILD-TYPE     54     10     24     22
D1962V12, multiclass

Clustering(1963) Variable = CCDC11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC11 MUTATED        1      0      0      2
  CCDC11 WILD-TYPE     45     58     64     41
D1963V1, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC11 MUTATED        2      1      0
  CCDC11 WILD-TYPE     49     82     77
D1963V2, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC11 MUTATED        6      3      1      0
  CCDC11 WILD-TYPE    172    180    100     20
D1963V3, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC11 MUTATED        1      2      3
  CCDC11 WILD-TYPE     86     78     97
D1963V4, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC11 MUTATED        0      5      3
  CCDC11 WILD-TYPE     89    155    135
D1963V5, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC11 MUTATED        3      4      1
  CCDC11 WILD-TYPE    179    129     71
D1963V6, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC11 MUTATED        3      2      1      4
  CCDC11 WILD-TYPE    109     94     91    182
D1963V7, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC11 MUTATED        0      1      1      3      0      0      5
  CCDC11 WILD-TYPE     60     49     48     37     63    125     94
D1963V8, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              3               37
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC11 MUTATED        5      0      0      4
  CCDC11 WILD-TYPE    125     78     68    192
D1963V9, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC11 MUTATED        2      1      1      1      2      1      0      0
  CCDC11 WILD-TYPE     38     61     27     79     67     47     43     28
                  vv
clus               CLUS_9
  CCDC11 MUTATED        1
  CCDC11 WILD-TYPE     73
D1963V10, multiclass
        clus
vv       CCDC11 MUTATED CCDC11 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC11 MUTATED        0      0      1      1
  CCDC11 WILD-TYPE     33     31     26     18
D1963V11, multiclass
[1] "Remove cluster labels:" "CCDC11 MUTATED"        
clus
  CCDC11 MUTATED CCDC11 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DY-A1DC 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC11 MUTATED        1      0      1      0
  CCDC11 WILD-TYPE     53     10     23     22
D1963V12, multiclass
[1] "Remove cluster labels:" "CCDC11 MUTATED"        
clus
  CCDC11 MUTATED CCDC11 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DY-A1DC 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" "CCDC11 WILD-TYPE" 

Clustering(1964) Variable = TRPM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM2 MUTATED        3      1      0      5
  TRPM2 WILD-TYPE     43     57     64     38
D1964V1, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM2 MUTATED        6      2      1
  TRPM2 WILD-TYPE     45     81     76
D1964V2, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM2 MUTATED       23      1      2      0
  TRPM2 WILD-TYPE    155    182     99     20
D1964V3, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1            23             155
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM2 MUTATED        7      0      9
  TRPM2 WILD-TYPE     80     80     91
D1964V4, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM2 MUTATED        3      8     10
  TRPM2 WILD-TYPE     86    152    128
D1964V5, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             8             152
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM2 MUTATED       11      9      1
  TRPM2 WILD-TYPE    171    124     71
D1964V6, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             9             124
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM2 MUTATED        0      8      8     10
  TRPM2 WILD-TYPE    112     88     84    176
D1964V7, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             8              88
  CLUS_3             8              84
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPM2 MUTATED        1      3     11      1      1      1      8
  TRPM2 WILD-TYPE     59     47     38     39     62    124     91
D1964V8, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3            11              38
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM2 MUTATED        8      4      1     12
  TRPM2 WILD-TYPE    122     74     67    184
D1964V9, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4            12             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRPM2 MUTATED        2      5      2      1     12      0      0      1
  TRPM2 WILD-TYPE     38     57     26     79     57     48     43     27
                 vv
clus              CLUS_9
  TRPM2 MUTATED        2
  TRPM2 WILD-TYPE     72
D1964V10, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5            12              57
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM2 MUTATED        1      0      0      4
  TRPM2 WILD-TYPE     32     31     27     15
D1964V11, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM2 MUTATED        3      0      2      0
  TRPM2 WILD-TYPE     51     10     22     22
D1964V12, multiclass
        clus
vv       TRPM2 MUTATED TRPM2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1965) Variable = TRIP12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP12 MUTATED        7      0      0      4
  TRIP12 WILD-TYPE     39     58     64     39
D1965V1, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              7               39
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP12 MUTATED        7      2      2
  TRIP12 WILD-TYPE     44     81     75
D1965V2, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              7               44
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP12 MUTATED       23      5      2      0
  TRIP12 WILD-TYPE    155    178     99     20
D1965V3, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1             23              155
  CLUS_2              5              178
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP12 MUTATED        8      0     11
  TRIP12 WILD-TYPE     79     80     89
D1965V4, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              0               80
  CLUS_3             11               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP12 MUTATED        3      7     12
  TRIP12 WILD-TYPE     86    153    126
D1965V5, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              7              153
  CLUS_3             12              126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP12 MUTATED       13      7      2
  TRIP12 WILD-TYPE    169    126     70
D1965V6, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP12 MUTATED        3      9      8     11
  TRIP12 WILD-TYPE    109     87     84    175
D1965V7, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              9               87
  CLUS_3              8               84
  CLUS_4             11              175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIP12 MUTATED        4      2     12      1      1      1     10
  TRIP12 WILD-TYPE     56     48     37     39     62    124     89
D1965V8, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3             12               37
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP12 MUTATED        9      5      2     14
  TRIP12 WILD-TYPE    121     73     66    182
D1965V9, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              5               73
  CLUS_3              2               66
  CLUS_4             14              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIP12 MUTATED        2      5      3      1     12      1      3      2
  TRIP12 WILD-TYPE     38     57     25     79     57     47     40     26
                  vv
clus               CLUS_9
  TRIP12 MUTATED        1
  TRIP12 WILD-TYPE     73
D1965V10, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              5               57
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5             12               57
  CLUS_6              1               47
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP12 MUTATED        5      1      0      1
  TRIP12 WILD-TYPE     28     30     27     18
D1965V11, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP12 MUTATED        3      0      2      2
  TRIP12 WILD-TYPE     51     10     22     20
D1965V12, multiclass
        clus
vv       TRIP12 MUTATED TRIP12 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1966) Variable = BBS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS2 MUTATED        2      0      0      4
  BBS2 WILD-TYPE     44     58     64     39
D1966V1, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BBS2 MUTATED        2      2      2
  BBS2 WILD-TYPE     49     81     75
D1966V2, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS2 MUTATED       10      2      1      0
  BBS2 WILD-TYPE    168    181    100     20
D1966V3, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BBS2 MUTATED        4      2      2
  BBS2 WILD-TYPE     83     78     98
D1966V4, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BBS2 MUTATED        0      4      9
  BBS2 WILD-TYPE     89    156    129
D1966V5, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            9            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BBS2 MUTATED        7      6      0
  BBS2 WILD-TYPE    175    127     72
D1966V6, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            7            175
  CLUS_2            6            127
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS2 MUTATED        2      3      3      6
  BBS2 WILD-TYPE    110     93     89    180
D1966V7, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            6            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BBS2 MUTATED        2      2      2      1      2      1      4
  BBS2 WILD-TYPE     58     48     47     39     61    124     95
D1966V8, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS2 MUTATED        3      3      1      6
  BBS2 WILD-TYPE    127     75     67    190
D1966V9, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BBS2 MUTATED        1      2      1      3      3      0      1      0      2
  BBS2 WILD-TYPE     39     60     27     77     66     48     42     28     72
D1966V10, multiclass
        clus
vv       BBS2 MUTATED BBS2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            3             77
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS2 MUTATED        0      1      0      1
  BBS2 WILD-TYPE     33     30     27     18
D1966V11, multiclass
[1] "Remove cluster labels:" "BBS2 MUTATED"          
clus
  BBS2 MUTATED BBS2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6653     TCGA-A6-6654 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS2 MUTATED        2      0      0      0
  BBS2 WILD-TYPE     52     10     24     22
D1966V12, multiclass
[1] "Remove cluster labels:" "BBS2 MUTATED"          
clus
  BBS2 MUTATED BBS2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6653     TCGA-A6-6654 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901     TCGA-AD-6963 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-4110 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" "BBS2 WILD-TYPE" 

Clustering(1967) Variable = PDGFC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFC MUTATED        1      0      0      2
  PDGFC WILD-TYPE     45     58     64     41
D1967V1, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDGFC MUTATED        1      1      1
  PDGFC WILD-TYPE     50     82     76
D1967V2, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFC MUTATED        7      1      1      0
  PDGFC WILD-TYPE    171    182    100     20
D1967V3, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDGFC MUTATED        4      0      2
  PDGFC WILD-TYPE     83     80     98
D1967V4, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDGFC MUTATED        1      3      5
  PDGFC WILD-TYPE     88    157    133
D1967V5, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDGFC MUTATED        5      3      1
  PDGFC WILD-TYPE    177    130     71
D1967V6, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFC MUTATED        2      2      3      3
  PDGFC WILD-TYPE    110     94     89    183
D1967V7, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PDGFC MUTATED        2      2      2      0      2      0      2
  PDGFC WILD-TYPE     58     48     47     40     61    125     97
D1967V8, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFC MUTATED        2      3      1      4
  PDGFC WILD-TYPE    128     75     67    192
D1967V9, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PDGFC MUTATED        1      2      1      2      2      0      2      0
  PDGFC WILD-TYPE     39     60     27     78     67     48     41     28
                 vv
clus              CLUS_9
  PDGFC MUTATED        0
  PDGFC WILD-TYPE     74
D1967V10, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFC MUTATED        2      1      1      0
  PDGFC WILD-TYPE     31     30     26     19
D1967V11, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDGFC MUTATED        3      0      1      0
  PDGFC WILD-TYPE     51     10     23     22
D1967V12, multiclass
        clus
vv       PDGFC MUTATED PDGFC WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1968) Variable = KIF13A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        2      0      1      4
  KIF13A WILD-TYPE     44     58     63     39
D1968V1, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED        2      3      2
  KIF13A WILD-TYPE     49     80     75
D1968V2, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              2               49
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED       16      3      3      0
  KIF13A WILD-TYPE    162    180     98     20
D1968V3, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1             16              162
  CLUS_2              3              180
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED        3      2      9
  KIF13A WILD-TYPE     84     78     91
D1968V4, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3               84
  CLUS_2              2               78
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED        1      8      9
  KIF13A WILD-TYPE     88    152    129
D1968V5, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              1               88
  CLUS_2              8              152
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED       12      4      2
  KIF13A WILD-TYPE    170    129     70
D1968V6, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1             12              170
  CLUS_2              4              129
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        0      8      7      7
  KIF13A WILD-TYPE    112     88     85    179
D1968V7, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              8               88
  CLUS_3              7               85
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF13A MUTATED        2      1      9      1      2      2      5
  KIF13A WILD-TYPE     58     49     40     39     61    123     94
D1968V8, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              9               40
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        8      6      0      7
  KIF13A WILD-TYPE    122     72     68    189
D1968V9, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              8              122
  CLUS_2              6               72
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF13A MUTATED        3      8      1      2      4      0      0      1
  KIF13A WILD-TYPE     37     54     27     78     65     48     43     27
                  vv
clus               CLUS_9
  KIF13A MUTATED        2
  KIF13A WILD-TYPE     72
D1968V10, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3               37
  CLUS_2              8               54
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        1      1      0      2
  KIF13A WILD-TYPE     32     30     27     17
D1968V11, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        3      1      0      0
  KIF13A WILD-TYPE     51      9     24     22
D1968V12, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1969) Variable = KNTC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        3      0      0      4
  KNTC1 WILD-TYPE     43     58     64     39
D1969V1, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNTC1 MUTATED        3      2      2
  KNTC1 WILD-TYPE     48     81     75
D1969V2, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED       20      4      1      0
  KNTC1 WILD-TYPE    158    179    100     20
D1969V3, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1            20             158
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNTC1 MUTATED        9      1      9
  KNTC1 WILD-TYPE     78     79     91
D1969V4, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             1              79
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNTC1 MUTATED        2      9     12
  KNTC1 WILD-TYPE     87    151    126
D1969V5, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             9             151
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNTC1 MUTATED       16      6      1
  KNTC1 WILD-TYPE    166    127     71
D1969V6, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1            16             166
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        1      5     12      7
  KNTC1 WILD-TYPE    111     91     80    179
D1969V7, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3            12              80
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KNTC1 MUTATED        4      1     11      0      3      1      5
  KNTC1 WILD-TYPE     56     49     38     40     60    124     94
D1969V8, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3            11              38
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        9      8      0      7
  KNTC1 WILD-TYPE    121     70     68    189
D1969V9, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             8              70
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KNTC1 MUTATED        2      9      2      4      3      0      2      1
  KNTC1 WILD-TYPE     38     53     26     76     66     48     41     27
                 vv
clus              CLUS_9
  KNTC1 MUTATED        1
  KNTC1 WILD-TYPE     73
D1969V10, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             9              53
  CLUS_3             2              26
  CLUS_4             4              76
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        2      3      0      5
  KNTC1 WILD-TYPE     31     28     27     14
D1969V11, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             5              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        8      0      2      0
  KNTC1 WILD-TYPE     46     10     22     22
D1969V12, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             8              46
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1970) Variable = TRIM45 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM45 MUTATED        2      0      0      3
  TRIM45 WILD-TYPE     44     58     64     40
D1970V1, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM45 MUTATED        5      0      0
  TRIM45 WILD-TYPE     46     83     77
D1970V2, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              0               83
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM45 MUTATED       11      0      2      1
  TRIM45 WILD-TYPE    167    183     99     19
D1970V3, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM45 MUTATED        3      0      6
  TRIM45 WILD-TYPE     84     80     94
D1970V4, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM45 MUTATED        3      3      5
  TRIM45 WILD-TYPE     86    157    133
D1970V5, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM45 MUTATED        7      1      3
  TRIM45 WILD-TYPE    175    132     69
D1970V6, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              1              132
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM45 MUTATED        0      5      4      5
  TRIM45 WILD-TYPE    112     91     88    181
D1970V7, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              4               88
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIM45 MUTATED        0      1      6      0      2      0      5
  TRIM45 WILD-TYPE     60     49     43     40     61    125     94
D1970V8, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              6               43
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM45 MUTATED        5      2      0      7
  TRIM45 WILD-TYPE    125     76     68    189
D1970V9, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRIM45 MUTATED        1      3      2      1      7      0      0      0
  TRIM45 WILD-TYPE     39     59     26     79     62     48     43     28
                  vv
clus               CLUS_9
  TRIM45 MUTATED        0
  TRIM45 WILD-TYPE     74
D1970V10, multiclass
        clus
vv       TRIM45 MUTATED TRIM45 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              7               62
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM45 MUTATED        0      0      0      1
  TRIM45 WILD-TYPE     33     31     27     18
D1970V11, multiclass
[1] "Remove cluster labels:" "TRIM45 MUTATED"        
clus
  TRIM45 MUTATED TRIM45 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-G5-6641 
"TRIM45 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM45 MUTATED        1      0      0      0
  TRIM45 WILD-TYPE     53     10     24     22
D1970V12, multiclass
[1] "Remove cluster labels:" "TRIM45 MUTATED"        
clus
  TRIM45 MUTATED TRIM45 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6704       TCGA-F4-6805 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" "TRIM45 WILD-TYPE" 
      TCGA-G5-6641 
"TRIM45 WILD-TYPE" 

Clustering(1971) Variable = UEVLD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UEVLD MUTATED        0      0      0      1
  UEVLD WILD-TYPE     46     58     64     42
D1971V1, multiclass
[1] "Remove cluster labels:" "UEVLD MUTATED"         
clus
  UEVLD MUTATED UEVLD WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UEVLD MUTATED        0      0      1
  UEVLD WILD-TYPE     51     83     76
D1971V2, multiclass
[1] "Remove cluster labels:" "UEVLD MUTATED"         
clus
  UEVLD MUTATED UEVLD WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UEVLD MUTATED        3      0      1      0
  UEVLD WILD-TYPE    175    183    100     20
D1971V3, multiclass
        clus
vv       UEVLD MUTATED UEVLD WILD-TYPE
  CLUS_1             3             175
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UEVLD MUTATED        2      0      1
  UEVLD WILD-TYPE     85     80     99
D1971V4, multiclass
        clus
vv       UEVLD MUTATED UEVLD WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UEVLD MUTATED        0      1      1
  UEVLD WILD-TYPE     89    159    137
D1971V5, multiclass
[1] "Remove cluster labels:" "UEVLD MUTATED"         
clus
  UEVLD MUTATED UEVLD WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4682 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6621 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918      TCGA-CM-4743 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G5-6641 
"UEVLD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UEVLD MUTATED        0      2      0
  UEVLD WILD-TYPE    182    131     72
D1971V6, multiclass
[1] "Remove cluster labels:" "UEVLD MUTATED"         
clus
  UEVLD MUTATED UEVLD WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4682 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599      TCGA-AZ-6600 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6606 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254      TCGA-CA-5255 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715      TCGA-CA-6716 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6621 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918      TCGA-CM-4743 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G5-6641 
"UEVLD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UEVLD MUTATED        0      2      1      1
  UEVLD WILD-TYPE    112     94     91    185
D1971V7, multiclass
        clus
vv       UEVLD MUTATED UEVLD WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UEVLD MUTATED        1      1      2      0      0      0      0
  UEVLD WILD-TYPE     59     49     47     40     63    125     99
D1971V8, multiclass
        clus
vv       UEVLD MUTATED UEVLD WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UEVLD MUTATED        1      1      0      2
  UEVLD WILD-TYPE    129     77     68    194
D1971V9, multiclass
        clus
vv       UEVLD MUTATED UEVLD WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  UEVLD MUTATED        0      0      1      1      1      0      0      0
  UEVLD WILD-TYPE     40     62     27     79     68     48     43     28
                 vv
clus              CLUS_9
  UEVLD MUTATED        1
  UEVLD WILD-TYPE     73
D1971V10, multiclass
        clus
vv       UEVLD MUTATED UEVLD WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UEVLD MUTATED        1      0      0      0
  UEVLD WILD-TYPE     32     31     27     19
D1971V11, multiclass
[1] "Remove cluster labels:" "UEVLD MUTATED"         
clus
  UEVLD MUTATED UEVLD WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G5-6641 
"UEVLD WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UEVLD MUTATED        1      0      0      0
  UEVLD WILD-TYPE     53     10     24     22
D1971V12, multiclass
[1] "Remove cluster labels:" "UEVLD MUTATED"         
clus
  UEVLD MUTATED UEVLD WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" "UEVLD WILD-TYPE" 
     TCGA-G5-6641 
"UEVLD WILD-TYPE" 

Clustering(1972) Variable = PEX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEX2 MUTATED        1      0      0      0
  PEX2 WILD-TYPE     45     58     64     43
D1972V1, multiclass
[1] "Remove cluster labels:" "PEX2 MUTATED"          
clus
  PEX2 MUTATED PEX2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PEX2 MUTATED        1      0      0
  PEX2 WILD-TYPE     50     83     77
D1972V2, multiclass
[1] "Remove cluster labels:" "PEX2 MUTATED"          
clus
  PEX2 MUTATED PEX2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEX2 MUTATED       10      0      0      0
  PEX2 WILD-TYPE    168    183    101     20
D1972V3, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PEX2 MUTATED        2      0      7
  PEX2 WILD-TYPE     85     80     93
D1972V4, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PEX2 MUTATED        0      3      6
  PEX2 WILD-TYPE     89    157    132
D1972V5, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PEX2 MUTATED        6      3      0
  PEX2 WILD-TYPE    176    130     72
D1972V6, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEX2 MUTATED        0      6      3      1
  PEX2 WILD-TYPE    112     90     89    185
D1972V7, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PEX2 MUTATED        0      2      5      0      2      0      1
  PEX2 WILD-TYPE     60     48     44     40     61    125     98
D1972V8, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEX2 MUTATED        7      2      0      0
  PEX2 WILD-TYPE    123     76     68    196
D1972V9, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PEX2 MUTATED        1      2      1      1      4      0      0      0      0
  PEX2 WILD-TYPE     39     60     27     79     65     48     43     28     74
D1972V10, multiclass
        clus
vv       PEX2 MUTATED PEX2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEX2 MUTATED        0      0      1      1
  PEX2 WILD-TYPE     33     31     26     18
D1972V11, multiclass
[1] "Remove cluster labels:" "PEX2 MUTATED"          
clus
  PEX2 MUTATED PEX2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6621     TCGA-CI-6624 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PEX2 MUTATED        0      0      1      1
  PEX2 WILD-TYPE     54     10     23     21
D1972V12, multiclass
[1] "Remove cluster labels:" "PEX2 MUTATED"          
clus
  PEX2 MUTATED PEX2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6621     TCGA-CI-6624 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" "PEX2 WILD-TYPE" 

Clustering(1973) Variable = C16ORF71 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF71 MUTATED        3      0      0      1
  C16ORF71 WILD-TYPE     43     58     64     42
D1973V1, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                1                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF71 MUTATED        3      1      0
  C16ORF71 WILD-TYPE     48     82     77
D1973V2, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                1                 82
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF71 MUTATED        7      0      0      0
  C16ORF71 WILD-TYPE    171    183    101     20
D1973V3, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                7                171
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF71 MUTATED        2      0      0
  C16ORF71 WILD-TYPE     85     80    100
D1973V4, multiclass
[1] "Remove cluster labels:" "C16ORF71 MUTATED"      
clus
  C16ORF71 MUTATED C16ORF71 WILD-TYPE 
                 2                265 
        TCGA-A6-2671         TCGA-A6-2677         TCGA-A6-3809 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-4105         TCGA-A6-5656 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-5657         TCGA-A6-5659         TCGA-A6-5660 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-5661         TCGA-A6-5662         TCGA-A6-5664 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-5665         TCGA-A6-5666         TCGA-A6-6137 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-6138         TCGA-A6-6141         TCGA-A6-6142 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-6648         TCGA-A6-6649         TCGA-A6-6651 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-6652         TCGA-A6-6653         TCGA-A6-6654 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-A6-6780         TCGA-A6-6781         TCGA-A6-6782 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3492         TCGA-AA-3496 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AA-3502         TCGA-AA-3510         TCGA-AA-3511 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AA-3655         TCGA-AA-3660         TCGA-AA-3662 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AA-3663         TCGA-AA-3697         TCGA-AA-3712 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AD-5900         TCGA-AD-6548 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AD-6888         TCGA-AD-6889         TCGA-AD-6890 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AD-6895         TCGA-AD-6899         TCGA-AD-6901 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-2693         TCGA-AF-4110 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02N         TCGA-AG-A036 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-3779 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4323 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AZ-4616         TCGA-AZ-4681         TCGA-AZ-4682 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-5407         TCGA-AZ-6598 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AZ-6599         TCGA-AZ-6600         TCGA-AZ-6601 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6606 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-AZ-6608         TCGA-CA-5254 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CA-5255         TCGA-CA-5796         TCGA-CA-5797 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CA-6715         TCGA-CA-6716         TCGA-CA-6718 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6619         TCGA-CI-6620 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6622         TCGA-CI-6624 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CK-4947         TCGA-CK-4948         TCGA-CK-4950 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CK-4952         TCGA-CK-5912         TCGA-CK-5913 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CK-5914         TCGA-CK-5915         TCGA-CK-5916 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CK-6746         TCGA-CK-6747         TCGA-CK-6748 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CK-6751         TCGA-CL-5917         TCGA-CL-5918 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-4743         TCGA-CM-4744         TCGA-CM-4746 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-4747         TCGA-CM-4752         TCGA-CM-5341 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-5344         TCGA-CM-5348         TCGA-CM-5349 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-5861         TCGA-CM-5862 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-5863         TCGA-CM-5864         TCGA-CM-5868 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6161         TCGA-CM-6162         TCGA-CM-6163 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6164         TCGA-CM-6165         TCGA-CM-6166 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6168         TCGA-CM-6169 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6170         TCGA-CM-6171         TCGA-CM-6172 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6675         TCGA-CM-6676 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-5538 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6929         TCGA-D5-6930 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-D5-6931         TCGA-D5-6932         TCGA-D5-7000 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A0X9         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A285 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A28C         TCGA-DM-A28E         TCGA-DM-A28F 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DM-A28G         TCGA-DM-A28H         TCGA-DM-A28K 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" "C16ORF71 WILD-TYPE" 
        TCGA-G5-6641 
"C16ORF71 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF71 MUTATED        1      1      3
  C16ORF71 WILD-TYPE     88    159    135
D1973V5, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                1                159
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF71 MUTATED        3      2      0
  C16ORF71 WILD-TYPE    179    131     72
D1973V6, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF71 MUTATED        1      1      1      4
  C16ORF71 WILD-TYPE    111     95     91    182
D1973V7, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C16ORF71 MUTATED        1      1      0      0      1      1      3
  C16ORF71 WILD-TYPE     59     49     49     40     62    124     96
D1973V8, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                0                 49
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF71 MUTATED        1      1      0      5
  C16ORF71 WILD-TYPE    129     77     68    191
D1973V9, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C16ORF71 MUTATED        0      1      0      2      3      0      0      0
  C16ORF71 WILD-TYPE     40     61     28     78     66     48     43     28
                    vv
clus                 CLUS_9
  C16ORF71 MUTATED        1
  C16ORF71 WILD-TYPE     73
D1973V10, multiclass
        clus
vv       C16ORF71 MUTATED C16ORF71 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                3                 66
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF71 MUTATED        0      0      0      0
  C16ORF71 WILD-TYPE     33     31     27     19
D1973V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF71 MUTATED        0      0      0      0
  C16ORF71 WILD-TYPE     54     10     24     22
D1973V12, multiclass

Clustering(1974) Variable = SLC6A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        1      0      0      0
  SLC6A3 WILD-TYPE     45     58     64     43
D1974V1, multiclass
[1] "Remove cluster labels:" "SLC6A3 MUTATED"        
clus
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3872 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        1      0      0
  SLC6A3 WILD-TYPE     50     83     77
D1974V2, multiclass
[1] "Remove cluster labels:" "SLC6A3 MUTATED"        
clus
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3872 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        6      1      1      0
  SLC6A3 WILD-TYPE    172    182    100     20
D1974V3, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      1      6
  SLC6A3 WILD-TYPE     87     79     94
D1974V4, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        0      3      3
  SLC6A3 WILD-TYPE     89    157    135
D1974V5, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC6A3 MUTATED        3      3      0
  SLC6A3 WILD-TYPE    179    130     72
D1974V6, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        1      4      3      0
  SLC6A3 WILD-TYPE    111     92     89    186
D1974V7, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC6A3 MUTATED        1      0      5      0      0      0      2
  SLC6A3 WILD-TYPE     59     50     44     40     63    125     97
D1974V8, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        4      1      1      2
  SLC6A3 WILD-TYPE    126     77     67    194
D1974V9, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC6A3 MUTATED        1      1      0      1      4      0      0      1
  SLC6A3 WILD-TYPE     39     61     28     79     65     48     43     27
                  vv
clus               CLUS_9
  SLC6A3 MUTATED        0
  SLC6A3 WILD-TYPE     74
D1974V10, multiclass
        clus
vv       SLC6A3 MUTATED SLC6A3 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      0      1      1
  SLC6A3 WILD-TYPE     33     31     26     18
D1974V11, multiclass
[1] "Remove cluster labels:" "SLC6A3 MUTATED"        
clus
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D7 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A3 MUTATED        0      0      2      0
  SLC6A3 WILD-TYPE     54     10     22     22
D1974V12, multiclass
[1] "Remove cluster labels:" "SLC6A3 MUTATED"        
clus
  SLC6A3 MUTATED SLC6A3 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D7 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" "SLC6A3 WILD-TYPE" 

Clustering(1975) Variable = MLNR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLNR MUTATED        2      0      0      0
  MLNR WILD-TYPE     44     58     64     43
D1975V1, multiclass
[1] "Remove cluster labels:" "MLNR MUTATED"          
clus
  MLNR MUTATED MLNR WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AY-4071 
"MLNR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLNR MUTATED        2      0      0
  MLNR WILD-TYPE     49     83     77
D1975V2, multiclass
[1] "Remove cluster labels:" "MLNR MUTATED"          
clus
  MLNR MUTATED MLNR WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AY-4071 
"MLNR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLNR MUTATED        3      0      0      0
  MLNR WILD-TYPE    175    183    101     20
D1975V3, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLNR MUTATED        0      0      1
  MLNR WILD-TYPE     87     80     99
D1975V4, multiclass
[1] "Remove cluster labels:" "MLNR MUTATED"          
clus
  MLNR MUTATED MLNR WILD-TYPE 
             1            266 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AD-6890     TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AF-2693     TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6674     TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A28H     TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G4-6588     TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G5-6235     TCGA-G5-6641 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLNR MUTATED        2      0      1
  MLNR WILD-TYPE     87    160    137
D1975V5, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            2             87
  CLUS_2            0            160
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLNR MUTATED        1      2      0
  MLNR WILD-TYPE    181    131     72
D1975V6, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            1            181
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLNR MUTATED        1      0      1      2
  MLNR WILD-TYPE    111     96     91    184
D1975V7, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             96
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLNR MUTATED        1      0      1      0      0      0      2
  MLNR WILD-TYPE     59     50     48     40     63    125     97
D1975V8, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLNR MUTATED        1      0      0      3
  MLNR WILD-TYPE    129     78     68    193
D1975V9, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MLNR MUTATED        0      0      0      1      2      0      0      1      0
  MLNR WILD-TYPE     40     62     28     79     67     48     43     27     74
D1975V10, multiclass
        clus
vv       MLNR MUTATED MLNR WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLNR MUTATED        0      0      1      0
  MLNR WILD-TYPE     33     31     26     19
D1975V11, multiclass
[1] "Remove cluster labels:" "MLNR MUTATED"          
clus
  MLNR MUTATED MLNR WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G5-6641 
"MLNR WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLNR MUTATED        0      0      0      1
  MLNR WILD-TYPE     54     10     24     21
D1975V12, multiclass
[1] "Remove cluster labels:" "MLNR MUTATED"          
clus
  MLNR MUTATED MLNR WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" "MLNR WILD-TYPE" 
    TCGA-G5-6641 
"MLNR WILD-TYPE" 

Clustering(1976) Variable = GSK3B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSK3B MUTATED        3      0      1      2
  GSK3B WILD-TYPE     43     58     63     41
D1976V1, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSK3B MUTATED        3      3      0
  GSK3B WILD-TYPE     48     80     77
D1976V2, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSK3B MUTATED       10      3      1      0
  GSK3B WILD-TYPE    168    180    100     20
D1976V3, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1            10             168
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSK3B MUTATED        4      1      4
  GSK3B WILD-TYPE     83     79     96
D1976V4, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSK3B MUTATED        2      4      5
  GSK3B WILD-TYPE     87    156    133
D1976V5, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSK3B MUTATED        5      5      1
  GSK3B WILD-TYPE    177    128     71
D1976V6, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSK3B MUTATED        2      6      2      5
  GSK3B WILD-TYPE    110     90     90    181
D1976V7, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSK3B MUTATED        1      3      2      1      2      2      4
  GSK3B WILD-TYPE     59     47     47     39     61    123     95
D1976V8, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSK3B MUTATED        5      2      0      8
  GSK3B WILD-TYPE    125     76     68    188
D1976V9, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GSK3B MUTATED        1      2      2      2      3      0      2      1
  GSK3B WILD-TYPE     39     60     26     78     66     48     41     27
                 vv
clus              CLUS_9
  GSK3B MUTATED        2
  GSK3B WILD-TYPE     72
D1976V10, multiclass
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSK3B MUTATED        1      0      0      0
  GSK3B WILD-TYPE     32     31     27     19
D1976V11, multiclass
[1] "Remove cluster labels:" "GSK3B MUTATED"         
clus
  GSK3B MUTATED GSK3B WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A28F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-G5-6641 
"GSK3B WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSK3B MUTATED        1      0      0      0
  GSK3B WILD-TYPE     53     10     24     22
D1976V12, multiclass
[1] "Remove cluster labels:" "GSK3B MUTATED"         
clus
  GSK3B MUTATED GSK3B WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A28F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-G5-6641 
"GSK3B WILD-TYPE" 

Clustering(1977) Variable = ZNF462 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF462 MUTATED        5      1      0      2
  ZNF462 WILD-TYPE     41     57     64     41
D1977V1, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF462 MUTATED        4      3      1
  ZNF462 WILD-TYPE     47     80     76
D1977V2, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF462 MUTATED       22      3      0      3
  ZNF462 WILD-TYPE    156    180    101     17
D1977V3, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1             22              156
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              3               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF462 MUTATED        7      2      9
  ZNF462 WILD-TYPE     80     78     91
D1977V4, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF462 MUTATED        2      7     13
  ZNF462 WILD-TYPE     87    153    125
D1977V5, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              7              153
  CLUS_3             13              125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF462 MUTATED       11     10      1
  ZNF462 WILD-TYPE    171    123     71
D1977V6, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1             11              171
  CLUS_2             10              123
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF462 MUTATED        4      8      8      8
  ZNF462 WILD-TYPE    108     88     84    178
D1977V7, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              8               88
  CLUS_3              8               84
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF462 MUTATED        1      5     11      0      3      2      6
  ZNF462 WILD-TYPE     59     45     38     40     60    123     93
D1977V8, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              5               45
  CLUS_3             11               38
  CLUS_4              0               40
  CLUS_5              3               60
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF462 MUTATED        9      4      1     13
  ZNF462 WILD-TYPE    121     74     67    183
D1977V9, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              4               74
  CLUS_3              1               67
  CLUS_4             13              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF462 MUTATED        3      7      1      3     10      0      0      2
  ZNF462 WILD-TYPE     37     55     27     77     59     48     43     26
                  vv
clus               CLUS_9
  ZNF462 MUTATED        1
  ZNF462 WILD-TYPE     73
D1977V10, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              7               55
  CLUS_3              1               27
  CLUS_4              3               77
  CLUS_5             10               59
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF462 MUTATED        1      1      1      4
  ZNF462 WILD-TYPE     32     30     26     15
D1977V11, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF462 MUTATED        3      0      4      0
  ZNF462 WILD-TYPE     51     10     20     22
D1977V12, multiclass
        clus
vv       ZNF462 MUTATED ZNF462 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1978) Variable = HOXD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD9 MUTATED        0      1      0      1
  HOXD9 WILD-TYPE     46     57     64     42
D1978V1, multiclass
[1] "Remove cluster labels:" "HOXD9 MUTATED"         
clus
  HOXD9 MUTATED HOXD9 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4008 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AY-4071 
"HOXD9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD9 MUTATED        0      1      1
  HOXD9 WILD-TYPE     51     82     76
D1978V2, multiclass
[1] "Remove cluster labels:" "HOXD9 MUTATED"         
clus
  HOXD9 MUTATED HOXD9 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4008 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AY-4071 
"HOXD9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD9 MUTATED        4      1      0      0
  HOXD9 WILD-TYPE    174    182    101     20
D1978V3, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD9 MUTATED        1      0      2
  HOXD9 WILD-TYPE     86     80     98
D1978V4, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD9 MUTATED        1      3      1
  HOXD9 WILD-TYPE     88    157    137
D1978V5, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD9 MUTATED        3      1      1
  HOXD9 WILD-TYPE    179    132     71
D1978V6, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD9 MUTATED        0      2      1      2
  HOXD9 WILD-TYPE    112     94     91    184
D1978V7, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HOXD9 MUTATED        1      0      3      0      0      1      0
  HOXD9 WILD-TYPE     59     50     46     40     63    124     99
D1978V8, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD9 MUTATED        2      0      0      3
  HOXD9 WILD-TYPE    128     78     68    193
D1978V9, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HOXD9 MUTATED        1      1      0      0      2      0      0      0
  HOXD9 WILD-TYPE     39     61     28     80     67     48     43     28
                 vv
clus              CLUS_9
  HOXD9 MUTATED        1
  HOXD9 WILD-TYPE     73
D1978V10, multiclass
        clus
vv       HOXD9 MUTATED HOXD9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD9 MUTATED        0      0      0      1
  HOXD9 WILD-TYPE     33     31     27     18
D1978V11, multiclass
[1] "Remove cluster labels:" "HOXD9 MUTATED"         
clus
  HOXD9 MUTATED HOXD9 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-G5-6641 
"HOXD9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD9 MUTATED        0      0      1      0
  HOXD9 WILD-TYPE     54     10     23     22
D1978V12, multiclass
[1] "Remove cluster labels:" "HOXD9 MUTATED"         
clus
  HOXD9 MUTATED HOXD9 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" "HOXD9 WILD-TYPE" 
     TCGA-G5-6641 
"HOXD9 WILD-TYPE" 

Clustering(1979) Variable = MGEA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGEA5 MUTATED        2      0      0      0
  MGEA5 WILD-TYPE     44     58     64     43
D1979V1, multiclass
[1] "Remove cluster labels:" "MGEA5 MUTATED"         
clus
  MGEA5 MUTATED MGEA5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3685 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AY-4071 
"MGEA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGEA5 MUTATED        2      0      0
  MGEA5 WILD-TYPE     49     83     77
D1979V2, multiclass
[1] "Remove cluster labels:" "MGEA5 MUTATED"         
clus
  MGEA5 MUTATED MGEA5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3685 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AY-4071 
"MGEA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGEA5 MUTATED        6      0      1      1
  MGEA5 WILD-TYPE    172    183    100     19
D1979V3, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGEA5 MUTATED        3      2      1
  MGEA5 WILD-TYPE     84     78     99
D1979V4, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGEA5 MUTATED        1      1      5
  MGEA5 WILD-TYPE     88    159    133
D1979V5, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGEA5 MUTATED        4      2      1
  MGEA5 WILD-TYPE    178    131     71
D1979V6, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGEA5 MUTATED        1      3      2      2
  MGEA5 WILD-TYPE    111     93     90    184
D1979V7, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MGEA5 MUTATED        1      1      1      1      2      1      1
  MGEA5 WILD-TYPE     59     49     48     39     61    124     98
D1979V8, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGEA5 MUTATED        3      1      1      3
  MGEA5 WILD-TYPE    127     77     67    193
D1979V9, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MGEA5 MUTATED        1      1      1      0      2      0      1      1
  MGEA5 WILD-TYPE     39     61     27     80     67     48     42     27
                 vv
clus              CLUS_9
  MGEA5 MUTATED        1
  MGEA5 WILD-TYPE     73
D1979V10, multiclass
        clus
vv       MGEA5 MUTATED MGEA5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGEA5 MUTATED        0      1      0      0
  MGEA5 WILD-TYPE     33     30     27     19
D1979V11, multiclass
[1] "Remove cluster labels:" "MGEA5 MUTATED"         
clus
  MGEA5 MUTATED MGEA5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-G5-6641 
"MGEA5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGEA5 MUTATED        1      0      0      0
  MGEA5 WILD-TYPE     53     10     24     22
D1979V12, multiclass
[1] "Remove cluster labels:" "MGEA5 MUTATED"         
clus
  MGEA5 MUTATED MGEA5 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6601 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" "MGEA5 WILD-TYPE" 
     TCGA-G5-6641 
"MGEA5 WILD-TYPE" 

Clustering(1980) Variable = C7ORF33 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF33 MUTATED        2      1      0      2
  C7ORF33 WILD-TYPE     44     57     64     41
D1980V1, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF33 MUTATED        2      0      3
  C7ORF33 WILD-TYPE     49     83     74
D1980V2, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF33 MUTATED        6      0      0      0
  C7ORF33 WILD-TYPE    172    183    101     20
D1980V3, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF33 MUTATED        1      0      0
  C7ORF33 WILD-TYPE     86     80    100
D1980V4, multiclass
[1] "Remove cluster labels:" "C7ORF33 MUTATED"       
clus
  C7ORF33 MUTATED C7ORF33 WILD-TYPE 
                1               266 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AF-2693        TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-4681        TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF33 MUTATED        0      1      4
  C7ORF33 WILD-TYPE     89    159    134
D1980V5, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF33 MUTATED        3      1      1
  C7ORF33 WILD-TYPE    179    132     71
D1980V6, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF33 MUTATED        0      0      1      5
  C7ORF33 WILD-TYPE    112     96     91    181
D1980V7, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               0                96
  CLUS_3               1                91
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C7ORF33 MUTATED        1      0      1      0      0      1      3
  C7ORF33 WILD-TYPE     59     50     48     40     63    124     96
D1980V8, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF33 MUTATED        0      1      0      5
  C7ORF33 WILD-TYPE    130     77     68    191
D1980V9, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               0               130
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C7ORF33 MUTATED        0      1      1      1      3      0      0      0
  C7ORF33 WILD-TYPE     40     61     27     79     66     48     43     28
                   vv
clus                CLUS_9
  C7ORF33 MUTATED        0
  C7ORF33 WILD-TYPE     74
D1980V10, multiclass
        clus
vv       C7ORF33 MUTATED C7ORF33 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF33 MUTATED        0      0      0      1
  C7ORF33 WILD-TYPE     33     31     27     18
D1980V11, multiclass
[1] "Remove cluster labels:" "C7ORF33 MUTATED"       
clus
  C7ORF33 MUTATED C7ORF33 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G5-6641 
"C7ORF33 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF33 MUTATED        1      0      0      0
  C7ORF33 WILD-TYPE     53     10     24     22
D1980V12, multiclass
[1] "Remove cluster labels:" "C7ORF33 MUTATED"       
clus
  C7ORF33 MUTATED C7ORF33 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" "C7ORF33 WILD-TYPE" 
       TCGA-G5-6641 
"C7ORF33 WILD-TYPE" 

Clustering(1981) Variable = ATP2C2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        0      0      1      1
  ATP2C2 WILD-TYPE     46     58     63     42
D1981V1, multiclass
[1] "Remove cluster labels:" "ATP2C2 MUTATED"        
clus
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3999       TCGA-AG-4001 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AY-4071 
"ATP2C2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        0      1      1
  ATP2C2 WILD-TYPE     51     82     76
D1981V2, multiclass
[1] "Remove cluster labels:" "ATP2C2 MUTATED"        
clus
  ATP2C2 MUTATED ATP2C2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AF-3913       TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3580       TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3584       TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3594       TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3601       TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3609       TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3883       TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3999       TCGA-AG-4001 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" "ATP2C2 WILD-TYPE" 
      TCGA-AY-4071 
"ATP2C2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED       10      1      0      0
  ATP2C2 WILD-TYPE    168    182    101     20
D1981V3, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        3      0      6
  ATP2C2 WILD-TYPE     84     80     94
D1981V4, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        0      4      4
  ATP2C2 WILD-TYPE     89    156    134
D1981V5, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C2 MUTATED        4      3      1
  ATP2C2 WILD-TYPE    178    130     71
D1981V6, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        0      6      3      2
  ATP2C2 WILD-TYPE    112     90     89    184
D1981V7, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATP2C2 MUTATED        0      0      8      0      1      1      1
  ATP2C2 WILD-TYPE     60     50     41     40     62    124     98
D1981V8, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        5      3      1      2
  ATP2C2 WILD-TYPE    125     75     67    194
D1981V9, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATP2C2 MUTATED        1      3      1      0      5      0      0      0
  ATP2C2 WILD-TYPE     39     59     27     80     64     48     43     28
                  vv
clus               CLUS_9
  ATP2C2 MUTATED        1
  ATP2C2 WILD-TYPE     73
D1981V10, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        0      0      0      4
  ATP2C2 WILD-TYPE     33     31     27     15
D1981V11, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C2 MUTATED        0      0      4      0
  ATP2C2 WILD-TYPE     54     10     20     22
D1981V12, multiclass
        clus
vv       ATP2C2 MUTATED ATP2C2 WILD-TYPE
  CLUS_1              0               54
  CLUS_2              0               10
  CLUS_3              4               20
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1982) Variable = DCAF8L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF8L1 MUTATED        2      0      0      5
  DCAF8L1 WILD-TYPE     44     58     64     38
D1982V1, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCAF8L1 MUTATED        3      1      3
  DCAF8L1 WILD-TYPE     48     82     74
D1982V2, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF8L1 MUTATED       13      2      3      0
  DCAF8L1 WILD-TYPE    165    181     98     20
D1982V3, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               2               181
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCAF8L1 MUTATED        4      2      5
  DCAF8L1 WILD-TYPE     83     78     95
D1982V4, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCAF8L1 MUTATED        2      8      5
  DCAF8L1 WILD-TYPE     87    152    133
D1982V5, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               8               152
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCAF8L1 MUTATED        8      6      1
  DCAF8L1 WILD-TYPE    174    127     71
D1982V6, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               6               127
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF8L1 MUTATED        3      5      4      5
  DCAF8L1 WILD-TYPE    109     91     88    181
D1982V7, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCAF8L1 MUTATED        2      5      3      0      2      2      3
  DCAF8L1 WILD-TYPE     58     45     46     40     61    123     96
D1982V8, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               5                45
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF8L1 MUTATED        5      3      1      8
  DCAF8L1 WILD-TYPE    125     75     67    188
D1982V9, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCAF8L1 MUTATED        2      3      2      1      4      0      2      1
  DCAF8L1 WILD-TYPE     38     59     26     79     65     48     41     27
                   vv
clus                CLUS_9
  DCAF8L1 MUTATED        2
  DCAF8L1 WILD-TYPE     72
D1982V10, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               3                59
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF8L1 MUTATED        1      0      0      2
  DCAF8L1 WILD-TYPE     32     31     27     17
D1982V11, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF8L1 MUTATED        2      0      1      0
  DCAF8L1 WILD-TYPE     52     10     23     22
D1982V12, multiclass
        clus
vv       DCAF8L1 MUTATED DCAF8L1 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1983) Variable = CENPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPA MUTATED        2      0      0      2
  CENPA WILD-TYPE     44     58     64     41
D1983V1, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPA MUTATED        3      1      0
  CENPA WILD-TYPE     48     82     77
D1983V2, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPA MUTATED        5      0      0      0
  CENPA WILD-TYPE    173    183    101     20
D1983V3, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPA MUTATED        1      0      1
  CENPA WILD-TYPE     86     80     99
D1983V4, multiclass
[1] "Remove cluster labels:" "CENPA MUTATED"         
clus
  CENPA MUTATED CENPA WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3810      TCGA-A6-4105 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659      TCGA-A6-5660 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664      TCGA-A6-5665 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649      TCGA-A6-6651 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654      TCGA-A6-6780 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3492 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510      TCGA-AA-3511 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662      TCGA-AA-3663 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713      TCGA-AD-5900 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889      TCGA-AD-6890 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901      TCGA-AD-6963 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2693 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742      TCGA-AG-A01W 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02N 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4681      TCGA-AZ-4682 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6622 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948      TCGA-CK-4950 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913      TCGA-CK-5914 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746      TCGA-CK-6747 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917      TCGA-CL-5918 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-4743      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-5538 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929      TCGA-D5-6930 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000      TCGA-DC-5337 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28C 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DM-A28H 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" "CENPA WILD-TYPE" 
     TCGA-G5-6641 
"CENPA WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPA MUTATED        1      2      2
  CENPA WILD-TYPE     88    158    136
D1983V5, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CENPA MUTATED        1      2      2
  CENPA WILD-TYPE    181    131     70
D1983V6, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             1             181
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPA MUTATED        0      1      0      4
  CENPA WILD-TYPE    112     95     92    182
D1983V7, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CENPA MUTATED        0      1      0      0      0      0      4
  CENPA WILD-TYPE     60     49     49     40     63    125     95
D1983V8, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPA MUTATED        0      0      0      4
  CENPA WILD-TYPE    130     78     68    192
D1983V9, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             0             130
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CENPA MUTATED        0      0      1      1      1      0      0      0
  CENPA WILD-TYPE     40     62     27     79     68     48     43     28
                 vv
clus              CLUS_9
  CENPA MUTATED        1
  CENPA WILD-TYPE     73
D1983V10, multiclass
        clus
vv       CENPA MUTATED CENPA WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPA MUTATED        0      0      0      0
  CENPA WILD-TYPE     33     31     27     19
D1983V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CENPA MUTATED        0      0      0      0
  CENPA WILD-TYPE     54     10     24     22
D1983V12, multiclass

Clustering(1984) Variable = MST1R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1R MUTATED        1      0      0      0
  MST1R WILD-TYPE     45     58     64     43
D1984V1, multiclass
[1] "Remove cluster labels:" "MST1R MUTATED"         
clus
  MST1R MUTATED MST1R WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MST1R MUTATED        1      0      0
  MST1R WILD-TYPE     50     83     77
D1984V2, multiclass
[1] "Remove cluster labels:" "MST1R MUTATED"         
clus
  MST1R MUTATED MST1R WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" "MST1R WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MST1R WILD-TYPE" "MST1R WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1R MUTATED        9      2      1      2
  MST1R WILD-TYPE    169    181    100     18
D1984V3, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MST1R MUTATED        5      1      7
  MST1R WILD-TYPE     82     79     93
D1984V4, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MST1R MUTATED        1      4      7
  MST1R WILD-TYPE     88    156    131
D1984V5, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MST1R MUTATED        9      3      0
  MST1R WILD-TYPE    173    130     72
D1984V6, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             9             173
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1R MUTATED        1      5      7      1
  MST1R WILD-TYPE    111     91     85    185
D1984V7, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             7              85
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MST1R MUTATED        0      1      9      1      2      0      1
  MST1R WILD-TYPE     60     49     40     39     61    125     98
D1984V8, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             9              40
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1R MUTATED        9      4      0      1
  MST1R WILD-TYPE    121     74     68    195
D1984V9, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MST1R MUTATED        2      7      1      0      3      1      0      0
  MST1R WILD-TYPE     38     55     27     80     66     47     43     28
                 vv
clus              CLUS_9
  MST1R MUTATED        0
  MST1R WILD-TYPE     74
D1984V10, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             2              38
  CLUS_2             7              55
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1R MUTATED        3      1      0      2
  MST1R WILD-TYPE     30     30     27     17
D1984V11, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MST1R MUTATED        5      0      1      0
  MST1R WILD-TYPE     49     10     23     22
D1984V12, multiclass
        clus
vv       MST1R MUTATED MST1R WILD-TYPE
  CLUS_1             5              49
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1985) Variable = NONO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NONO MUTATED        0      0      1      1
  NONO WILD-TYPE     46     58     63     42
D1985V1, multiclass
[1] "Remove cluster labels:" "NONO MUTATED"          
clus
  NONO MUTATED NONO WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3594     TCGA-AG-3598 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AY-4071 
"NONO WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NONO MUTATED        0      1      1
  NONO WILD-TYPE     51     82     76
D1985V2, multiclass
[1] "Remove cluster labels:" "NONO MUTATED"          
clus
  NONO MUTATED NONO WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3594     TCGA-AG-3598 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" "NONO WILD-TYPE" 
    TCGA-AY-4071 
"NONO WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NONO MUTATED        6      3      2      1
  NONO WILD-TYPE    172    180     99     19
D1985V3, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            6            172
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NONO MUTATED        5      1      4
  NONO WILD-TYPE     82     79     96
D1985V4, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NONO MUTATED        1      3      6
  NONO WILD-TYPE     88    157    132
D1985V5, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NONO MUTATED        4      4      2
  NONO WILD-TYPE    178    129     70
D1985V6, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            4            178
  CLUS_2            4            129
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NONO MUTATED        2      6      3      1
  NONO WILD-TYPE    110     90     89    185
D1985V7, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            2            110
  CLUS_2            6             90
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NONO MUTATED        3      4      2      1      0      1      1
  NONO WILD-TYPE     57     46     47     39     63    124     98
D1985V8, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            3             57
  CLUS_2            4             46
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NONO MUTATED        6      2      1      3
  NONO WILD-TYPE    124     76     67    193
D1985V9, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            6            124
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NONO MUTATED        3      1      2      1      1      1      2      0      1
  NONO WILD-TYPE     37     61     26     79     68     47     41     28     73
D1985V10, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            3             37
  CLUS_2            1             61
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NONO MUTATED        2      0      1      1
  NONO WILD-TYPE     31     31     26     18
D1985V11, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NONO MUTATED        2      0      2      0
  NONO WILD-TYPE     52     10     22     22
D1985V12, multiclass
        clus
vv       NONO MUTATED NONO WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1986) Variable = CYP2C9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C9 MUTATED        2      1      0      2
  CYP2C9 WILD-TYPE     44     57     64     41
D1986V1, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2C9 MUTATED        2      2      1
  CYP2C9 WILD-TYPE     49     81     76
D1986V2, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C9 MUTATED        5      3      1      0
  CYP2C9 WILD-TYPE    173    180    100     20
D1986V3, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2C9 MUTATED        0      2      2
  CYP2C9 WILD-TYPE     87     78     98
D1986V4, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2C9 MUTATED        0      4      4
  CYP2C9 WILD-TYPE     89    156    134
D1986V5, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP2C9 MUTATED        3      2      3
  CYP2C9 WILD-TYPE    179    131     69
D1986V6, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C9 MUTATED        2      2      0      5
  CYP2C9 WILD-TYPE    110     94     92    181
D1986V7, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP2C9 MUTATED        2      1      1      1      0      2      2
  CYP2C9 WILD-TYPE     58     49     48     39     63    123     97
D1986V8, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C9 MUTATED        2      0      1      5
  CYP2C9 WILD-TYPE    128     78     67    191
D1986V9, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP2C9 MUTATED        2      0      0      1      3      0      1      1
  CYP2C9 WILD-TYPE     38     62     28     79     66     48     42     27
                  vv
clus               CLUS_9
  CYP2C9 MUTATED        0
  CYP2C9 WILD-TYPE     74
D1986V10, multiclass
        clus
vv       CYP2C9 MUTATED CYP2C9 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C9 MUTATED        0      0      1      0
  CYP2C9 WILD-TYPE     33     31     26     19
D1986V11, multiclass
[1] "Remove cluster labels:" "CYP2C9 MUTATED"        
clus
  CYP2C9 MUTATED CYP2C9 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-G5-6641 
"CYP2C9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP2C9 MUTATED        0      0      1      0
  CYP2C9 WILD-TYPE     54     10     23     22
D1986V12, multiclass
[1] "Remove cluster labels:" "CYP2C9 MUTATED"        
clus
  CYP2C9 MUTATED CYP2C9 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" "CYP2C9 WILD-TYPE" 
      TCGA-G5-6641 
"CYP2C9 WILD-TYPE" 

Clustering(1987) Variable = ADAM33 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM33 MUTATED        1      0      1      1
  ADAM33 WILD-TYPE     45     58     63     42
D1987V1, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM33 MUTATED        1      1      1
  ADAM33 WILD-TYPE     50     82     76
D1987V2, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM33 MUTATED        5      1      1      0
  ADAM33 WILD-TYPE    173    182    100     20
D1987V3, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM33 MUTATED        1      1      2
  ADAM33 WILD-TYPE     86     79     98
D1987V4, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM33 MUTATED        1      1      4
  ADAM33 WILD-TYPE     88    159    134
D1987V5, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM33 MUTATED        2      2      2
  ADAM33 WILD-TYPE    180    131     70
D1987V6, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM33 MUTATED        1      2      2      2
  ADAM33 WILD-TYPE    111     94     90    184
D1987V7, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM33 MUTATED        0      0      2      0      2      1      2
  ADAM33 WILD-TYPE     60     50     47     40     61    124     97
D1987V8, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM33 MUTATED        2      2      0      3
  ADAM33 WILD-TYPE    128     76     68    193
D1987V9, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM33 MUTATED        0      2      0      1      3      0      0      0
  ADAM33 WILD-TYPE     40     60     28     79     66     48     43     28
                  vv
clus               CLUS_9
  ADAM33 MUTATED        1
  ADAM33 WILD-TYPE     73
D1987V10, multiclass
        clus
vv       ADAM33 MUTATED ADAM33 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM33 MUTATED        0      0      0      1
  ADAM33 WILD-TYPE     33     31     27     18
D1987V11, multiclass
[1] "Remove cluster labels:" "ADAM33 MUTATED"        
clus
  ADAM33 MUTATED ADAM33 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-G5-6641 
"ADAM33 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM33 MUTATED        0      0      1      0
  ADAM33 WILD-TYPE     54     10     23     22
D1987V12, multiclass
[1] "Remove cluster labels:" "ADAM33 MUTATED"        
clus
  ADAM33 MUTATED ADAM33 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" "ADAM33 WILD-TYPE" 
      TCGA-G5-6641 
"ADAM33 WILD-TYPE" 

Clustering(1988) Variable = DYRK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        1      0      1      2
  DYRK4 WILD-TYPE     45     58     63     41
D1988V1, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        1      0      3
  DYRK4 WILD-TYPE     50     83     74
D1988V2, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        8      2      2      2
  DYRK4 WILD-TYPE    170    181     99     18
D1988V3, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             2              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        3      1      6
  DYRK4 WILD-TYPE     84     79     94
D1988V4, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        1      7      2
  DYRK4 WILD-TYPE     88    153    136
D1988V5, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        5      3      2
  DYRK4 WILD-TYPE    177    130     70
D1988V6, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        1      5      4      4
  DYRK4 WILD-TYPE    111     91     88    182
D1988V7, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             4              88
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DYRK4 MUTATED        2      2      5      0      2      0      3
  DYRK4 WILD-TYPE     58     48     44     40     61    125     96
D1988V8, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        4      6      1      3
  DYRK4 WILD-TYPE    126     72     67    193
D1988V9, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             6              72
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DYRK4 MUTATED        3      3      0      2      3      1      0      1
  DYRK4 WILD-TYPE     37     59     28     78     66     47     43     27
                 vv
clus              CLUS_9
  DYRK4 MUTATED        1
  DYRK4 WILD-TYPE     73
D1988V10, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        2      0      1      0
  DYRK4 WILD-TYPE     31     31     26     19
D1988V11, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        2      0      1      0
  DYRK4 WILD-TYPE     52     10     23     22
D1988V12, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1989) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      0      0      1
  ZMIZ1 WILD-TYPE     44     58     64     42
D1989V1, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        2      0      1
  ZMIZ1 WILD-TYPE     49     83     76
D1989V2, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        8      1      2      0
  ZMIZ1 WILD-TYPE    170    182     99     20
D1989V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        2      2      4
  ZMIZ1 WILD-TYPE     85     78     96
D1989V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      2      6
  ZMIZ1 WILD-TYPE     88    158    132
D1989V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        7      2      0
  ZMIZ1 WILD-TYPE    175    131     72
D1989V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        2      5      1      3
  ZMIZ1 WILD-TYPE    110     91     91    183
D1989V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZMIZ1 MUTATED        3      1      4      1      0      0      2
  ZMIZ1 WILD-TYPE     57     49     45     39     63    125     97
D1989V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        5      1      2      3
  ZMIZ1 WILD-TYPE    125     77     66    193
D1989V9, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             2              66
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZMIZ1 MUTATED        1      1      0      0      5      1      3      0
  ZMIZ1 WILD-TYPE     39     61     28     80     64     47     40     28
                 vv
clus              CLUS_9
  ZMIZ1 MUTATED        0
  ZMIZ1 WILD-TYPE     74
D1989V10, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      0      1      1
  ZMIZ1 WILD-TYPE     33     31     26     18
D1989V11, multiclass
[1] "Remove cluster labels:" "ZMIZ1 MUTATED"         
clus
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6641 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      0      1      1
  ZMIZ1 WILD-TYPE     54     10     23     21
D1989V12, multiclass
[1] "Remove cluster labels:" "ZMIZ1 MUTATED"         
clus
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6534      TCGA-D5-6536 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6641 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 

Clustering(1990) Variable = NLRP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP8 MUTATED        4      1      2      4
  NLRP8 WILD-TYPE     42     57     62     39
D1990V1, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP8 MUTATED        6      2      3
  NLRP8 WILD-TYPE     45     81     74
D1990V2, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP8 MUTATED       16      8      4      0
  NLRP8 WILD-TYPE    162    175     97     20
D1990V3, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             8             175
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP8 MUTATED        7      4      6
  NLRP8 WILD-TYPE     80     76     94
D1990V4, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             7              80
  CLUS_2             4              76
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP8 MUTATED        4      6     12
  NLRP8 WILD-TYPE     85    154    126
D1990V5, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             6             154
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP8 MUTATED       14      4      4
  NLRP8 WILD-TYPE    168    129     68
D1990V6, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1            14             168
  CLUS_2             4             129
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP8 MUTATED        8      6      4     10
  NLRP8 WILD-TYPE    104     90     88    176
D1990V7, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4            10             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP8 MUTATED        3      0      4      4      5      4      8
  NLRP8 WILD-TYPE     57     50     45     36     58    121     91
D1990V8, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             4              36
  CLUS_5             5              58
  CLUS_6             4             121
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP8 MUTATED       10      4      3     10
  NLRP8 WILD-TYPE    120     74     65    186
D1990V9, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1            10             120
  CLUS_2             4              74
  CLUS_3             3              65
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NLRP8 MUTATED        5      4      2      5      4      0      3      1
  NLRP8 WILD-TYPE     35     58     26     75     65     48     40     27
                 vv
clus              CLUS_9
  NLRP8 MUTATED        3
  NLRP8 WILD-TYPE     71
D1990V10, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             5              75
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP8 MUTATED        1      2      0      0
  NLRP8 WILD-TYPE     32     29     27     19
D1990V11, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP8 MUTATED        1      1      1      0
  NLRP8 WILD-TYPE     53      9     23     22
D1990V12, multiclass
        clus
vv       NLRP8 MUTATED NLRP8 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1991) Variable = RALGAPB MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        4      0      0      2
  RALGAPB WILD-TYPE     42     58     64     41
D1991V1, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED        4      1      1
  RALGAPB WILD-TYPE     47     82     76
D1991V2, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED       14      1      0      0
  RALGAPB WILD-TYPE    164    182    101     20
D1991V3, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1              14               164
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED        3      1      5
  RALGAPB WILD-TYPE     84     79     95
D1991V4, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED        0      3      9
  RALGAPB WILD-TYPE     89    157    129
D1991V5, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               0                89
  CLUS_2               3               157
  CLUS_3               9               129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED        8      3      1
  RALGAPB WILD-TYPE    174    130     71
D1991V6, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               8               174
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        1      4      4      6
  RALGAPB WILD-TYPE    111     92     88    180
D1991V7, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               4                88
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RALGAPB MUTATED        1      0      8      1      0      0      5
  RALGAPB WILD-TYPE     59     50     41     39     63    125     94
D1991V8, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               8                41
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        4      2      1      8
  RALGAPB WILD-TYPE    126     76     67    188
D1991V9, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RALGAPB MUTATED        0      2      1      0      8      0      2      2
  RALGAPB WILD-TYPE     40     60     27     80     61     48     41     26
                   vv
clus                CLUS_9
  RALGAPB MUTATED        0
  RALGAPB WILD-TYPE     74
D1991V10, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               2                26
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        2      0      0      2
  RALGAPB WILD-TYPE     31     31     27     17
D1991V11, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        2      0      1      1
  RALGAPB WILD-TYPE     52     10     23     21
D1991V12, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1992) Variable = DCLRE1C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1C MUTATED        1      0      0      1
  DCLRE1C WILD-TYPE     45     58     64     42
D1992V1, multiclass
[1] "Remove cluster labels:" "DCLRE1C MUTATED"       
clus
  DCLRE1C MUTATED DCLRE1C WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3949        TCGA-AA-3950 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3893 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AY-4071 
"DCLRE1C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1C MUTATED        1      0      1
  DCLRE1C WILD-TYPE     50     83     76
D1992V2, multiclass
[1] "Remove cluster labels:" "DCLRE1C MUTATED"       
clus
  DCLRE1C MUTATED DCLRE1C WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3949        TCGA-AA-3950 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3893 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AY-4071 
"DCLRE1C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1C MUTATED       10      2      0      0
  DCLRE1C WILD-TYPE    168    181    101     20
D1992V3, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1              10               168
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1C MUTATED        2      2      5
  DCLRE1C WILD-TYPE     85     78     95
D1992V4, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1C MUTATED        2      6      3
  DCLRE1C WILD-TYPE     87    154    135
D1992V5, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               2                87
  CLUS_2               6               154
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DCLRE1C MUTATED        2      7      2
  DCLRE1C WILD-TYPE    180    126     70
D1992V6, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               2               180
  CLUS_2               7               126
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1C MUTATED        2      5      2      3
  DCLRE1C WILD-TYPE    110     91     90    183
D1992V7, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               2               110
  CLUS_2               5                91
  CLUS_3               2                90
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCLRE1C MUTATED        2      1      4      0      1      0      4
  DCLRE1C WILD-TYPE     58     49     45     40     62    125     95
D1992V8, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1C MUTATED        4      2      1      5
  DCLRE1C WILD-TYPE    126     76     67    191
D1992V9, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCLRE1C MUTATED        2      2      1      1      5      0      1      0
  DCLRE1C WILD-TYPE     38     60     27     79     64     48     42     28
                   vv
clus                CLUS_9
  DCLRE1C MUTATED        0
  DCLRE1C WILD-TYPE     74
D1992V10, multiclass
        clus
vv       DCLRE1C MUTATED DCLRE1C WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1C MUTATED        1      0      0      1
  DCLRE1C WILD-TYPE     32     31     27     18
D1992V11, multiclass
[1] "Remove cluster labels:" "DCLRE1C MUTATED"       
clus
  DCLRE1C MUTATED DCLRE1C WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCLRE1C MUTATED        1      0      1      0
  DCLRE1C WILD-TYPE     53     10     23     22
D1992V12, multiclass
[1] "Remove cluster labels:" "DCLRE1C MUTATED"       
clus
  DCLRE1C MUTATED DCLRE1C WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718        TCGA-CA-6719 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6624 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" "DCLRE1C WILD-TYPE" 

Clustering(1993) Variable = SLC9A9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A9 MUTATED        5      0      1      5
  SLC9A9 WILD-TYPE     41     58     63     38
D1993V1, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A9 MUTATED        7      2      2
  SLC9A9 WILD-TYPE     44     81     75
D1993V2, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              7               44
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A9 MUTATED       15      6      1      1
  SLC9A9 WILD-TYPE    163    177    100     19
D1993V3, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1             15              163
  CLUS_2              6              177
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A9 MUTATED        4      3      4
  SLC9A9 WILD-TYPE     83     77     96
D1993V4, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              3               77
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A9 MUTATED        2      8      7
  SLC9A9 WILD-TYPE     87    152    131
D1993V5, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              8              152
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A9 MUTATED        8      9      0
  SLC9A9 WILD-TYPE    174    124     72
D1993V6, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              9              124
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A9 MUTATED        4      3      4     12
  SLC9A9 WILD-TYPE    108     93     88    174
D1993V7, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              3               93
  CLUS_3              4               88
  CLUS_4             12              174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC9A9 MUTATED        3      2      2      1      4      1     10
  SLC9A9 WILD-TYPE     57     48     47     39     59    124     89
D1993V8, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              1              124
  CLUS_7             10               89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A9 MUTATED        7      4      0     10
  SLC9A9 WILD-TYPE    123     74     68    186
D1993V9, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC9A9 MUTATED        2      4      2      3      7      1      0      1
  SLC9A9 WILD-TYPE     38     58     26     77     62     47     43     27
                  vv
clus               CLUS_9
  SLC9A9 MUTATED        1
  SLC9A9 WILD-TYPE     73
D1993V10, multiclass
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A9 MUTATED        0      1      0      1
  SLC9A9 WILD-TYPE     33     30     27     18
D1993V11, multiclass
[1] "Remove cluster labels:" "SLC9A9 MUTATED"        
clus
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A9 MUTATED        2      0      0      0
  SLC9A9 WILD-TYPE     52     10     24     22
D1993V12, multiclass
[1] "Remove cluster labels:" "SLC9A9 MUTATED"        
clus
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 

Clustering(1994) Variable = C17ORF58 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF58 MUTATED        0      0      0      0
  C17ORF58 WILD-TYPE     46     58     64     43
D1994V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF58 MUTATED        0      0      0
  C17ORF58 WILD-TYPE     51     83     77
D1994V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF58 MUTATED        3      0      0      0
  C17ORF58 WILD-TYPE    175    183    101     20
D1994V3, multiclass
        clus
vv       C17ORF58 MUTATED C17ORF58 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF58 MUTATED        1      0      2
  C17ORF58 WILD-TYPE     86     80     98
D1994V4, multiclass
        clus
vv       C17ORF58 MUTATED C17ORF58 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                0                 80
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF58 MUTATED        0      0      1
  C17ORF58 WILD-TYPE     89    160    137
D1994V5, multiclass
[1] "Remove cluster labels:" "C17ORF58 MUTATED"      
clus
  C17ORF58 MUTATED C17ORF58 WILD-TYPE 
                 1                386 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3510         TCGA-AA-3511         TCGA-AA-3514 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3655 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3672         TCGA-AA-3678 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3688         TCGA-AA-3695 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3697         TCGA-AA-3710 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3712         TCGA-AA-3713         TCGA-AA-3715 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3812         TCGA-AA-3814 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3815         TCGA-AA-3818         TCGA-AA-3819 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3848 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3852         TCGA-AA-3854 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3861         TCGA-AA-3864 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3869         TCGA-AA-3872 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3947         TCGA-AA-3950 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3968         TCGA-AA-3971 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3986         TCGA-AA-3989 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00E 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00Q 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01I 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A022 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02K 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AD-5900 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6548         TCGA-AD-6889         TCGA-AD-6899 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2689         TCGA-AF-3400 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AF-5654         TCGA-AF-6136 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3609         TCGA-AG-3612 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3731         TCGA-AG-3742 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3893         TCGA-AG-3896 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A002 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01W 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A026 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A036         TCGA-AH-6544         TCGA-AH-6547 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AH-6644 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4682 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-5407         TCGA-AZ-6598         TCGA-AZ-6599 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6606         TCGA-AZ-6607 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6608         TCGA-CA-5254         TCGA-CA-5255 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-5796         TCGA-CA-5797         TCGA-CA-6715 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-6716         TCGA-CA-6717         TCGA-CA-6718 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6621         TCGA-CK-5914 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6746         TCGA-CK-6747 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CK-6751         TCGA-CL-5918 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-4743         TCGA-CM-4744         TCGA-CM-4746 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-4747         TCGA-CM-4752         TCGA-CM-5341 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5344         TCGA-CM-5348         TCGA-CM-5349 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-5861         TCGA-CM-5862 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5863         TCGA-CM-5864         TCGA-CM-5868 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6161         TCGA-CM-6162         TCGA-CM-6163 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6164         TCGA-CM-6165         TCGA-CM-6166 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6168         TCGA-CM-6169 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6170         TCGA-CM-6171         TCGA-CM-6172 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6675         TCGA-CM-6676 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5538         TCGA-D5-5539 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-5540         TCGA-D5-5541         TCGA-D5-6529 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6532         TCGA-D5-6533         TCGA-D5-6534 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6535         TCGA-D5-6536         TCGA-D5-6537 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6538         TCGA-D5-6539         TCGA-D5-6540 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6541         TCGA-D5-6898         TCGA-D5-6920 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6923         TCGA-D5-6924 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6926         TCGA-D5-6927         TCGA-D5-6928 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6930         TCGA-D5-6931         TCGA-D5-6932 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A0X9         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1D4         TCGA-DM-A1D6         TCGA-DM-A1D7 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1DB         TCGA-DM-A1HA         TCGA-DM-A1HB 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A28C         TCGA-DM-A28E 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DM-A28G         TCGA-DT-5265 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DY-A0XA         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DY-A1DF         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-EF-5830         TCGA-EI-6506         TCGA-EI-6507 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-EI-6508         TCGA-EI-6510         TCGA-F4-6459 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6703         TCGA-F4-6704         TCGA-F4-6805 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6806         TCGA-F4-6807         TCGA-F4-6808 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F4-6854         TCGA-F4-6855 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6856         TCGA-F5-6464         TCGA-F5-6465 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6812         TCGA-F5-6813         TCGA-G4-6293 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6299         TCGA-G4-6303         TCGA-G4-6304 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6307         TCGA-G4-6309 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6310         TCGA-G4-6315         TCGA-G4-6317 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6321         TCGA-G4-6323         TCGA-G4-6586 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6626         TCGA-G4-6628 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G5-6235         TCGA-G5-6641 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF58 MUTATED        1      0      0
  C17ORF58 WILD-TYPE    181    133     72
D1994V6, multiclass
[1] "Remove cluster labels:" "C17ORF58 MUTATED"      
clus
  C17ORF58 MUTATED C17ORF58 WILD-TYPE 
                 1                386 
        TCGA-A6-2671         TCGA-A6-2672         TCGA-A6-2676 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-5656         TCGA-A6-5657 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-5659         TCGA-A6-5660         TCGA-A6-5661 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-5662         TCGA-A6-5664         TCGA-A6-5665 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-5666         TCGA-A6-6137         TCGA-A6-6138 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6648 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6649         TCGA-A6-6651         TCGA-A6-6652 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6653         TCGA-A6-6654         TCGA-A6-6780 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3492         TCGA-AA-3496         TCGA-AA-3502 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3510         TCGA-AA-3511         TCGA-AA-3514 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3519         TCGA-AA-3520 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3525 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3548 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3558         TCGA-AA-3560 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3655 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3672         TCGA-AA-3678 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3688         TCGA-AA-3695 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3697         TCGA-AA-3710 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3712         TCGA-AA-3713         TCGA-AA-3715 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3812         TCGA-AA-3814 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3815         TCGA-AA-3818         TCGA-AA-3819 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3848 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3852         TCGA-AA-3854 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3861         TCGA-AA-3864 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3869         TCGA-AA-3872 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3947         TCGA-AA-3950 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3968         TCGA-AA-3971 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3986         TCGA-AA-3989 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00E 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00Q 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01I 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A022 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02K 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AD-5900 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6548         TCGA-AD-6889         TCGA-AD-6899 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2689         TCGA-AF-3400 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AF-5654         TCGA-AF-6136 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3609         TCGA-AG-3612 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3731         TCGA-AG-3742 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3893         TCGA-AG-3896 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A002 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01W 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A026 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-A036         TCGA-AH-6544         TCGA-AH-6547 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AH-6644 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4682 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-5407         TCGA-AZ-6598         TCGA-AZ-6599 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6600         TCGA-AZ-6601         TCGA-AZ-6603 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6605         TCGA-AZ-6606         TCGA-AZ-6607 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6608         TCGA-CA-5254         TCGA-CA-5255 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-5796         TCGA-CA-5797         TCGA-CA-6715 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-6716         TCGA-CA-6717         TCGA-CA-6718 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-6719         TCGA-CI-6621         TCGA-CK-5914 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6746         TCGA-CK-6747 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CK-6751         TCGA-CL-5918 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-4743         TCGA-CM-4744         TCGA-CM-4746 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-4747         TCGA-CM-4752         TCGA-CM-5341 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5344         TCGA-CM-5348         TCGA-CM-5349 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-5861         TCGA-CM-5862 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5863         TCGA-CM-5864         TCGA-CM-5868 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6161         TCGA-CM-6162         TCGA-CM-6163 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6164         TCGA-CM-6165         TCGA-CM-6166 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6167         TCGA-CM-6168         TCGA-CM-6169 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6170         TCGA-CM-6171         TCGA-CM-6172 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6675         TCGA-CM-6676 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5538         TCGA-D5-5539 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-5540         TCGA-D5-5541         TCGA-D5-6529 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6532         TCGA-D5-6533         TCGA-D5-6534 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6535         TCGA-D5-6536         TCGA-D5-6537 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6538         TCGA-D5-6539         TCGA-D5-6540 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6541         TCGA-D5-6898         TCGA-D5-6920 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6923         TCGA-D5-6924 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6926         TCGA-D5-6927         TCGA-D5-6928 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6930         TCGA-D5-6931         TCGA-D5-6932 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A0X9         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1D4         TCGA-DM-A1D6         TCGA-DM-A1D7 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1DB         TCGA-DM-A1HA         TCGA-DM-A1HB 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A28C         TCGA-DM-A28E 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DM-A28G         TCGA-DT-5265 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DY-A0XA         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DY-A1DF         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-EF-5830         TCGA-EI-6506         TCGA-EI-6507 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-EI-6508         TCGA-EI-6510         TCGA-F4-6459 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6703         TCGA-F4-6704         TCGA-F4-6805 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6806         TCGA-F4-6807         TCGA-F4-6808 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F4-6854         TCGA-F4-6855 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6856         TCGA-F5-6464         TCGA-F5-6465 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6812         TCGA-F5-6813         TCGA-G4-6293 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6299         TCGA-G4-6303         TCGA-G4-6304 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6307         TCGA-G4-6309 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6310         TCGA-G4-6315         TCGA-G4-6317 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6321         TCGA-G4-6323         TCGA-G4-6586 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6626         TCGA-G4-6628 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G5-6235         TCGA-G5-6641 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF58 MUTATED        0      2      1      0
  C17ORF58 WILD-TYPE    112     94     91    186
D1994V7, multiclass
        clus
vv       C17ORF58 MUTATED C17ORF58 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                2                 94
  CLUS_3                1                 91
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C17ORF58 MUTATED        0      0      3      0      0      0      0
  C17ORF58 WILD-TYPE     60     50     46     40     63    125     99
D1994V8, multiclass
        clus
vv       C17ORF58 MUTATED C17ORF58 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF58 MUTATED        1      1      0      1
  C17ORF58 WILD-TYPE    129     77     68    195
D1994V9, multiclass
        clus
vv       C17ORF58 MUTATED C17ORF58 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C17ORF58 MUTATED        0      0      0      1      2      0      0      0
  C17ORF58 WILD-TYPE     40     62     28     79     67     48     43     28
                    vv
clus                 CLUS_9
  C17ORF58 MUTATED        0
  C17ORF58 WILD-TYPE     74
D1994V10, multiclass
        clus
vv       C17ORF58 MUTATED C17ORF58 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                0                 62
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF58 MUTATED        1      0      0      0
  C17ORF58 WILD-TYPE     32     31     27     19
D1994V11, multiclass
[1] "Remove cluster labels:" "C17ORF58 MUTATED"      
clus
  C17ORF58 MUTATED C17ORF58 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G5-6641 
"C17ORF58 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF58 MUTATED        1      0      0      0
  C17ORF58 WILD-TYPE     53     10     24     22
D1994V12, multiclass
[1] "Remove cluster labels:" "C17ORF58 MUTATED"      
clus
  C17ORF58 MUTATED C17ORF58 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" "C17ORF58 WILD-TYPE" 
        TCGA-G5-6641 
"C17ORF58 WILD-TYPE" 

Clustering(1995) Variable = GORASP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GORASP1 MUTATED        1      0      0      2
  GORASP1 WILD-TYPE     45     58     64     41
D1995V1, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GORASP1 MUTATED        2      0      1
  GORASP1 WILD-TYPE     49     83     76
D1995V2, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GORASP1 MUTATED        9      1      1      0
  GORASP1 WILD-TYPE    169    182    100     20
D1995V3, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GORASP1 MUTATED        3      1      4
  GORASP1 WILD-TYPE     84     79     96
D1995V4, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GORASP1 MUTATED        0      4      6
  GORASP1 WILD-TYPE     89    156    132
D1995V5, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GORASP1 MUTATED        7      2      1
  GORASP1 WILD-TYPE    175    131     71
D1995V6, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               2               131
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GORASP1 MUTATED        2      2      4      2
  GORASP1 WILD-TYPE    110     94     88    184
D1995V7, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GORASP1 MUTATED        3      0      4      0      1      0      2
  GORASP1 WILD-TYPE     57     50     45     40     62    125     97
D1995V8, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GORASP1 MUTATED        4      1      1      4
  GORASP1 WILD-TYPE    126     77     67    192
D1995V9, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GORASP1 MUTATED        1      2      0      1      4      0      1      0
  GORASP1 WILD-TYPE     39     60     28     79     65     48     42     28
                   vv
clus                CLUS_9
  GORASP1 MUTATED        1
  GORASP1 WILD-TYPE     73
D1995V10, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GORASP1 MUTATED        1      0      0      2
  GORASP1 WILD-TYPE     32     31     27     17
D1995V11, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GORASP1 MUTATED        2      0      1      0
  GORASP1 WILD-TYPE     52     10     23     22
D1995V12, multiclass
        clus
vv       GORASP1 MUTATED GORASP1 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1996) Variable = RAD18 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD18 MUTATED        1      1      0      1
  RAD18 WILD-TYPE     45     57     64     42
D1996V1, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD18 MUTATED        0      2      1
  RAD18 WILD-TYPE     51     81     76
D1996V2, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD18 MUTATED       11      2      2      0
  RAD18 WILD-TYPE    167    181     99     20
D1996V3, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD18 MUTATED        4      3      6
  RAD18 WILD-TYPE     83     77     94
D1996V4, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD18 MUTATED        2      4      7
  RAD18 WILD-TYPE     87    156    131
D1996V5, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD18 MUTATED        7      4      2
  RAD18 WILD-TYPE    175    129     70
D1996V6, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD18 MUTATED        3      7      3      2
  RAD18 WILD-TYPE    109     89     89    184
D1996V7, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             7              89
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAD18 MUTATED        1      3      6      1      2      2      0
  RAD18 WILD-TYPE     59     47     43     39     61    123     99
D1996V8, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD18 MUTATED        7      2      1      5
  RAD18 WILD-TYPE    123     76     67    191
D1996V9, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RAD18 MUTATED        3      4      0      3      4      0      0      0
  RAD18 WILD-TYPE     37     58     28     77     65     48     43     28
                 vv
clus              CLUS_9
  RAD18 MUTATED        1
  RAD18 WILD-TYPE     73
D1996V10, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD18 MUTATED        1      0      1      2
  RAD18 WILD-TYPE     32     31     26     17
D1996V11, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD18 MUTATED        2      0      2      0
  RAD18 WILD-TYPE     52     10     22     22
D1996V12, multiclass
        clus
vv       RAD18 MUTATED RAD18 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1997) Variable = ZCWPW2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCWPW2 MUTATED        1      2      1      2
  ZCWPW2 WILD-TYPE     45     56     63     41
D1997V1, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2               56
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCWPW2 MUTATED        1      3      2
  ZCWPW2 WILD-TYPE     50     80     75
D1997V2, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCWPW2 MUTATED        9      4      1      0
  ZCWPW2 WILD-TYPE    169    179    100     20
D1997V3, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCWPW2 MUTATED        4      0      4
  ZCWPW2 WILD-TYPE     83     80     96
D1997V4, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCWPW2 MUTATED        4      6      3
  ZCWPW2 WILD-TYPE     85    154    135
D1997V5, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              6              154
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCWPW2 MUTATED        4      5      4
  ZCWPW2 WILD-TYPE    178    128     68
D1997V6, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              5              128
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCWPW2 MUTATED        1      6      1      6
  ZCWPW2 WILD-TYPE    111     90     91    180
D1997V7, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              1               91
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZCWPW2 MUTATED        2      4      3      0      0      3      2
  ZCWPW2 WILD-TYPE     58     46     46     40     63    122     97
D1997V8, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              4               46
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCWPW2 MUTATED        5      1      2      6
  ZCWPW2 WILD-TYPE    125     77     66    190
D1997V9, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZCWPW2 MUTATED        2      1      2      3      4      0      1      0
  ZCWPW2 WILD-TYPE     38     61     26     77     65     48     42     28
                  vv
clus               CLUS_9
  ZCWPW2 MUTATED        1
  ZCWPW2 WILD-TYPE     73
D1997V10, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              3               77
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCWPW2 MUTATED        2      0      0      1
  ZCWPW2 WILD-TYPE     31     31     27     18
D1997V11, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCWPW2 MUTATED        2      0      1      0
  ZCWPW2 WILD-TYPE     52     10     23     22
D1997V12, multiclass
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1998) Variable = OR5H1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        2      0      0      1
  OR5H1 WILD-TYPE     44     58     64     42
D1998V1, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5H1 MUTATED        2      1      0
  OR5H1 WILD-TYPE     49     82     77
D1998V2, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        6      2      1      1
  OR5H1 WILD-TYPE    172    181    100     19
D1998V3, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5H1 MUTATED        1      1      5
  OR5H1 WILD-TYPE     86     79     95
D1998V4, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5H1 MUTATED        1      3      4
  OR5H1 WILD-TYPE     88    157    134
D1998V5, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5H1 MUTATED        5      3      0
  OR5H1 WILD-TYPE    177    130     72
D1998V6, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        2      4      1      3
  OR5H1 WILD-TYPE    110     92     91    183
D1998V7, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              92
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5H1 MUTATED        1      1      3      1      1      1      2
  OR5H1 WILD-TYPE     59     49     46     39     62    124     97
D1998V8, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        7      0      0      2
  OR5H1 WILD-TYPE    123     78     68    194
D1998V9, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5H1 MUTATED        1      0      1      2      3      0      1      1
  OR5H1 WILD-TYPE     39     62     27     78     66     48     42     27
                 vv
clus              CLUS_9
  OR5H1 MUTATED        0
  OR5H1 WILD-TYPE     74
D1998V10, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        0      1      0      2
  OR5H1 WILD-TYPE     33     30     27     17
D1998V11, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5H1 MUTATED        1      0      2      0
  OR5H1 WILD-TYPE     53     10     22     22
D1998V12, multiclass
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1999) Variable = MDM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        0      0      0      2
  MDM2 WILD-TYPE     46     58     64     41
D1999V1, multiclass
[1] "Remove cluster labels:" "MDM2 MUTATED"          
clus
  MDM2 MUTATED MDM2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AY-4071 
"MDM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        1      1      0
  MDM2 WILD-TYPE     50     82     77
D1999V2, multiclass
[1] "Remove cluster labels:" "MDM2 MUTATED"          
clus
  MDM2 MUTATED MDM2 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AY-4071 
"MDM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        6      1      1      1
  MDM2 WILD-TYPE    172    182    100     19
D1999V3, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            6            172
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        2      2      3
  MDM2 WILD-TYPE     85     78     97
D1999V4, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        0      5      4
  MDM2 WILD-TYPE     89    155    134
D1999V5, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        5      4      0
  MDM2 WILD-TYPE    177    129     72
D1999V6, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        2      4      1      2
  MDM2 WILD-TYPE    110     92     91    184
D1999V7, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MDM2 MUTATED        2      1      2      1      1      0      2
  MDM2 WILD-TYPE     58     49     47     39     62    125     97
D1999V8, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        3      1      2      2
  MDM2 WILD-TYPE    127     77     66    194
D1999V9, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MDM2 MUTATED        0      2      2      1      1      0      2      0      0
  MDM2 WILD-TYPE     40     60     26     79     68     48     41     28     74
D1999V10, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        0      1      0      1
  MDM2 WILD-TYPE     33     30     27     18
D1999V11, multiclass
[1] "Remove cluster labels:" "MDM2 MUTATED"          
clus
  MDM2 MUTATED MDM2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6601     TCGA-AZ-6603 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        1      0      1      0
  MDM2 WILD-TYPE     53     10     23     22
D1999V12, multiclass
[1] "Remove cluster labels:" "MDM2 MUTATED"          
clus
  MDM2 MUTATED MDM2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6654 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6601     TCGA-AZ-6603 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 

Clustering(2000) Variable = ROR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROR1 MUTATED        3      1      0      4
  ROR1 WILD-TYPE     43     57     64     39
D2000V1, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROR1 MUTATED        2      1      5
  ROR1 WILD-TYPE     49     82     72
D2000V2, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROR1 MUTATED       15      4      4      0
  ROR1 WILD-TYPE    163    179     97     20
D2000V3, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            4            179
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROR1 MUTATED        6      3      5
  ROR1 WILD-TYPE     81     77     95
D2000V4, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            6             81
  CLUS_2            3             77
  CLUS_3            5             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROR1 MUTATED        1      5     11
  ROR1 WILD-TYPE     88    155    127
D2000V5, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3           11            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ROR1 MUTATED       10      5      2
  ROR1 WILD-TYPE    172    128     70
D2000V6, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1           10            172
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROR1 MUTATED        4      7      4      8
  ROR1 WILD-TYPE    108     89     88    178
D2000V7, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            7             89
  CLUS_3            4             88
  CLUS_4            8            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ROR1 MUTATED        2      5      5      3      1      3      4
  ROR1 WILD-TYPE     58     45     44     37     62    122     95
D2000V8, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            5             45
  CLUS_3            5             44
  CLUS_4            3             37
  CLUS_5            1             62
  CLUS_6            3            122
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROR1 MUTATED        8      3      1     10
  ROR1 WILD-TYPE    122     75     67    186
D2000V9, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ROR1 MUTATED        2      4      3      2      8      0      1      0      2
  ROR1 WILD-TYPE     38     58     25     78     61     48     42     28     72
D2000V10, multiclass
        clus
vv       ROR1 MUTATED ROR1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            4             58
  CLUS_3            3             25
  CLUS_4            2             78
  CLUS_5            8             61
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROR1 MUTATED        2      0      0      0
  ROR1 WILD-TYPE     31     31     27     19
D2000V11, multiclass
[1] "Remove cluster labels:" "ROR1 MUTATED"          
clus
  ROR1 MUTATED ROR1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676     TCGA-CM-6677 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROR1 MUTATED        2      0      0      0
  ROR1 WILD-TYPE     52     10     24     22
D2000V12, multiclass
[1] "Remove cluster labels:" "ROR1 MUTATED"          
clus
  ROR1 MUTATED ROR1 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6676     TCGA-CM-6677 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" "ROR1 WILD-TYPE" 

Clustering(2001) Variable = BATF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF MUTATED        0      0      0      1
  BATF WILD-TYPE     46     58     64     42
D2001V1, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"BATF WILD-TYPE" "BATF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BATF MUTATED        0      0      1
  BATF WILD-TYPE     51     83     76
D2001V2, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3883     TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008     TCGA-AG-A00C 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"BATF WILD-TYPE" "BATF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF MUTATED        2      1      0      0
  BATF WILD-TYPE    176    182    101     20
D2001V3, multiclass
        clus
vv       BATF MUTATED BATF WILD-TYPE
  CLUS_1            2            176
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BATF MUTATED        1      1      0
  BATF WILD-TYPE     86     79    100
D2001V4, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6890 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6603     TCGA-AZ-6605 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6622 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948     TCGA-CK-4950 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913     TCGA-CK-5914 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917     TCGA-CL-5918 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G5-6641 
"BATF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BATF MUTATED        0      1      1
  BATF WILD-TYPE     89    159    137
D2001V5, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6621 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918     TCGA-CM-4743 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G5-6641 
"BATF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BATF MUTATED        1      1      0
  BATF WILD-TYPE    181    132     72
D2001V6, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3609     TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3742     TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A008 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6621 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918     TCGA-CM-4743 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G5-6641 
"BATF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF MUTATED        1      0      1      1
  BATF WILD-TYPE    111     96     91    185
D2001V7, multiclass
        clus
vv       BATF MUTATED BATF WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             96
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BATF MUTATED        1      1      1      0      0      0      0
  BATF WILD-TYPE     59     49     48     40     63    125     99
D2001V8, multiclass
        clus
vv       BATF MUTATED BATF WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF MUTATED        0      1      1      1
  BATF WILD-TYPE    130     77     67    195
D2001V9, multiclass
        clus
vv       BATF MUTATED BATF WILD-TYPE
  CLUS_1            0            130
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  BATF MUTATED        0      1      0      0      1      0      1      0      0
  BATF WILD-TYPE     40     61     28     80     68     48     42     28     74
D2001V10, multiclass
        clus
vv       BATF MUTATED BATF WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF MUTATED        0      0      0      1
  BATF WILD-TYPE     33     31     27     18
D2001V11, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G5-6641 
"BATF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF MUTATED        1      0      0      0
  BATF WILD-TYPE     53     10     24     22
D2001V12, multiclass
[1] "Remove cluster labels:" "BATF MUTATED"          
clus
  BATF MUTATED BATF WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" "BATF WILD-TYPE" 
    TCGA-G5-6641 
"BATF WILD-TYPE" 

Clustering(2002) Variable = RNASE2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASE2 MUTATED        0      0      0      2
  RNASE2 WILD-TYPE     46     58     64     41
D2002V1, multiclass
[1] "Remove cluster labels:" "RNASE2 MUTATED"        
clus
  RNASE2 MUTATED RNASE2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AY-4071 
"RNASE2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASE2 MUTATED        1      0      1
  RNASE2 WILD-TYPE     50     83     76
D2002V2, multiclass
[1] "Remove cluster labels:" "RNASE2 MUTATED"        
clus
  RNASE2 MUTATED RNASE2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AY-4071 
"RNASE2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASE2 MUTATED        5      0      0      0
  RNASE2 WILD-TYPE    173    183    101     20
D2002V3, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASE2 MUTATED        2      0      1
  RNASE2 WILD-TYPE     85     80     99
D2002V4, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASE2 MUTATED        0      2      2
  RNASE2 WILD-TYPE     89    158    136
D2002V5, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASE2 MUTATED        2      2      0
  RNASE2 WILD-TYPE    180    131     72
D2002V6, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASE2 MUTATED        0      1      1      3
  RNASE2 WILD-TYPE    112     95     91    183
D2002V7, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNASE2 MUTATED        1      0      1      1      0      0      2
  RNASE2 WILD-TYPE     59     50     48     39     63    125     97
D2002V8, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASE2 MUTATED        1      1      0      2
  RNASE2 WILD-TYPE    129     77     68    194
D2002V9, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNASE2 MUTATED        0      1      0      0      1      1      0      0
  RNASE2 WILD-TYPE     40     61     28     80     68     47     43     28
                  vv
clus               CLUS_9
  RNASE2 MUTATED        1
  RNASE2 WILD-TYPE     73
D2002V10, multiclass
        clus
vv       RNASE2 MUTATED RNASE2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASE2 MUTATED        0      0      1      0
  RNASE2 WILD-TYPE     33     31     26     19
D2002V11, multiclass
[1] "Remove cluster labels:" "RNASE2 MUTATED"        
clus
  RNASE2 MUTATED RNASE2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-G5-6641 
"RNASE2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASE2 MUTATED        0      0      1      0
  RNASE2 WILD-TYPE     54     10     23     22
D2002V12, multiclass
[1] "Remove cluster labels:" "RNASE2 MUTATED"        
clus
  RNASE2 MUTATED RNASE2 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" "RNASE2 WILD-TYPE" 
      TCGA-G5-6641 
"RNASE2 WILD-TYPE" 

Clustering(2003) Variable = TRIO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIO MUTATED        2      0      2      6
  TRIO WILD-TYPE     44     58     62     37
D2003V1, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            6             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TRIO MUTATED        5      2      3
  TRIO WILD-TYPE     46     81     74
D2003V2, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            5             46
  CLUS_2            2             81
  CLUS_3            3             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIO MUTATED       23      5      4      0
  TRIO WILD-TYPE    155    178     97     20
D2003V3, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1           23            155
  CLUS_2            5            178
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TRIO MUTATED       10      2      9
  TRIO WILD-TYPE     77     78     91
D2003V4, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1           10             77
  CLUS_2            2             78
  CLUS_3            9             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TRIO MUTATED        4     11     15
  TRIO WILD-TYPE     85    149    123
D2003V5, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            4             85
  CLUS_2           11            149
  CLUS_3           15            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TRIO MUTATED       11     14      5
  TRIO WILD-TYPE    171    119     67
D2003V6, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1           11            171
  CLUS_2           14            119
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIO MUTATED        4     11      8      9
  TRIO WILD-TYPE    108     85     84    177
D2003V7, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            4            108
  CLUS_2           11             85
  CLUS_3            8             84
  CLUS_4            9            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRIO MUTATED        2      5      9      1      4      2      9
  TRIO WILD-TYPE     58     45     40     39     59    123     90
D2003V8, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            2             58
  CLUS_2            5             45
  CLUS_3            9             40
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            2            123
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIO MUTATED       11      4      4     12
  TRIO WILD-TYPE    119     74     64    184
D2003V9, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1           11            119
  CLUS_2            4             74
  CLUS_3            4             64
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TRIO MUTATED        1      4      2      1     13      1      3      2      4
  TRIO WILD-TYPE     39     58     26     79     56     47     40     26     70
D2003V10, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            1             39
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5           13             56
  CLUS_6            1             47
  CLUS_7            3             40
  CLUS_8            2             26
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIO MUTATED        2      2      1      4
  TRIO WILD-TYPE     31     29     26     15
D2003V11, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             29
  CLUS_3            1             26
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIO MUTATED        4      0      2      3
  TRIO WILD-TYPE     50     10     22     19
D2003V12, multiclass
        clus
vv       TRIO MUTATED TRIO WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2004) Variable = CTSL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSL1 MUTATED        1      0      0      2
  CTSL1 WILD-TYPE     45     58     64     41
D2004V1, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTSL1 MUTATED        2      0      1
  CTSL1 WILD-TYPE     49     83     76
D2004V2, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSL1 MUTATED        6      1      1      0
  CTSL1 WILD-TYPE    172    182    100     20
D2004V3, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTSL1 MUTATED        2      1      2
  CTSL1 WILD-TYPE     85     79     98
D2004V4, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTSL1 MUTATED        1      2      3
  CTSL1 WILD-TYPE     88    158    135
D2004V5, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTSL1 MUTATED        3      2      1
  CTSL1 WILD-TYPE    179    131     71
D2004V6, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSL1 MUTATED        1      2      2      3
  CTSL1 WILD-TYPE    111     94     90    183
D2004V7, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTSL1 MUTATED        3      0      2      1      0      0      2
  CTSL1 WILD-TYPE     57     50     47     39     63    125     97
D2004V8, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSL1 MUTATED        2      1      1      3
  CTSL1 WILD-TYPE    128     77     67    193
D2004V9, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CTSL1 MUTATED        0      0      1      1      3      0      2      0
  CTSL1 WILD-TYPE     40     62     27     79     66     48     41     28
                 vv
clus              CLUS_9
  CTSL1 MUTATED        0
  CTSL1 WILD-TYPE     74
D2004V10, multiclass
        clus
vv       CTSL1 MUTATED CTSL1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSL1 MUTATED        2      0      0      0
  CTSL1 WILD-TYPE     31     31     27     19
D2004V11, multiclass
[1] "Remove cluster labels:" "CTSL1 MUTATED"         
clus
  CTSL1 MUTATED CTSL1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6549 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSL1 MUTATED        1      0      1      0
  CTSL1 WILD-TYPE     53     10     23     22
D2004V12, multiclass
[1] "Remove cluster labels:" "CTSL1 MUTATED"         
clus
  CTSL1 MUTATED CTSL1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6549 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" "CTSL1 WILD-TYPE" 

Clustering(2005) Variable = KIF5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF5B MUTATED        1      0      1      3
  KIF5B WILD-TYPE     45     58     63     40
D2005V1, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF5B MUTATED        3      0      2
  KIF5B WILD-TYPE     48     83     75
D2005V2, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             3              48
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF5B MUTATED       15      1      1      0
  KIF5B WILD-TYPE    163    182    100     20
D2005V3, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1            15             163
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF5B MUTATED        3      4      4
  KIF5B WILD-TYPE     84     76     96
D2005V4, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             3              84
  CLUS_2             4              76
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF5B MUTATED        3      5      6
  KIF5B WILD-TYPE     86    155    132
D2005V5, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF5B MUTATED        6      5      3
  KIF5B WILD-TYPE    176    128     69
D2005V6, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF5B MUTATED        4      4      3      6
  KIF5B WILD-TYPE    108     92     89    180
D2005V7, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF5B MUTATED        4      1      6      0      1      1      4
  KIF5B WILD-TYPE     56     49     43     40     62    124     95
D2005V8, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF5B MUTATED        6      4      1      5
  KIF5B WILD-TYPE    124     74     67    191
D2005V9, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             6             124
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF5B MUTATED        1      4      0      1      7      1      2      0
  KIF5B WILD-TYPE     39     58     28     79     62     47     41     28
                 vv
clus              CLUS_9
  KIF5B MUTATED        0
  KIF5B WILD-TYPE     74
D2005V10, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF5B MUTATED        2      0      0      2
  KIF5B WILD-TYPE     31     31     27     17
D2005V11, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF5B MUTATED        3      0      1      0
  KIF5B WILD-TYPE     51     10     23     22
D2005V12, multiclass
        clus
vv       KIF5B MUTATED KIF5B WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2006) Variable = TMEM41B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        1      0      0      1
  TMEM41B WILD-TYPE     45     58     64     42
D2006V1, multiclass
[1] "Remove cluster labels:" "TMEM41B MUTATED"       
clus
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AY-4071 
"TMEM41B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        1      0      1
  TMEM41B WILD-TYPE     50     83     76
D2006V2, multiclass
[1] "Remove cluster labels:" "TMEM41B MUTATED"       
clus
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-AY-4071 
"TMEM41B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        4      1      0      0
  TMEM41B WILD-TYPE    174    182    101     20
D2006V3, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               4               174
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        2      0      1
  TMEM41B WILD-TYPE     85     80     99
D2006V4, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        0      2      2
  TMEM41B WILD-TYPE     89    158    136
D2006V5, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        3      1      0
  TMEM41B WILD-TYPE    179    132     72
D2006V6, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        1      1      1      2
  TMEM41B WILD-TYPE    111     95     91    184
D2006V7, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM41B MUTATED        1      1      1      0      1      0      1
  TMEM41B WILD-TYPE     59     49     48     40     62    125     98
D2006V8, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        3      0      0      2
  TMEM41B WILD-TYPE    127     78     68    194
D2006V9, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMEM41B MUTATED        1      1      0      1      2      0      0      0
  TMEM41B WILD-TYPE     39     61     28     79     67     48     43     28
                   vv
clus                CLUS_9
  TMEM41B MUTATED        0
  TMEM41B WILD-TYPE     74
D2006V10, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        0      0      0      0
  TMEM41B WILD-TYPE     33     31     27     19
D2006V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        0      0      0      0
  TMEM41B WILD-TYPE     54     10     24     22
D2006V12, multiclass

Clustering(2007) Variable = NUDT16L1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT16L1 MUTATED        0      0      0      0
  NUDT16L1 WILD-TYPE     46     58     64     43
D2007V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NUDT16L1 MUTATED        0      0      0
  NUDT16L1 WILD-TYPE     51     83     77
D2007V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT16L1 MUTATED        3      0      0      0
  NUDT16L1 WILD-TYPE    175    183    101     20
D2007V3, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NUDT16L1 MUTATED        1      0      1
  NUDT16L1 WILD-TYPE     86     80     99
D2007V4, multiclass
[1] "Remove cluster labels:" "NUDT16L1 MUTATED"      
clus
  NUDT16L1 MUTATED NUDT16L1 WILD-TYPE 
                 2                265 
        TCGA-A6-2671         TCGA-A6-2677         TCGA-A6-3809 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-4105         TCGA-A6-5656 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-5657         TCGA-A6-5659         TCGA-A6-5660 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-5661         TCGA-A6-5662         TCGA-A6-5664 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-5665         TCGA-A6-5666         TCGA-A6-6137 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6138         TCGA-A6-6141         TCGA-A6-6142 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6648         TCGA-A6-6649         TCGA-A6-6651 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6652         TCGA-A6-6653         TCGA-A6-6654 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6780         TCGA-A6-6781         TCGA-A6-6782 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3492         TCGA-AA-3496 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3502         TCGA-AA-3510         TCGA-AA-3511 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3655         TCGA-AA-3660         TCGA-AA-3662 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3663         TCGA-AA-3697         TCGA-AA-3712 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AD-5900         TCGA-AD-6548 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6888         TCGA-AD-6889         TCGA-AD-6890 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6895         TCGA-AD-6899         TCGA-AD-6901 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-2693         TCGA-AF-4110 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02N         TCGA-AG-A036 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-3779 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4681 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-4682         TCGA-AZ-5403         TCGA-AZ-5407 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6599         TCGA-AZ-6600 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6606         TCGA-AZ-6607         TCGA-AZ-6608 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CA-5254         TCGA-CA-5255         TCGA-CA-5796 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CA-5797         TCGA-CA-6715         TCGA-CA-6716 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CA-6717         TCGA-CA-6718         TCGA-CA-6719 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6624         TCGA-CK-4947 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CK-4948         TCGA-CK-4950         TCGA-CK-4952 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CK-5912         TCGA-CK-5913         TCGA-CK-5914 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CK-5915         TCGA-CK-5916         TCGA-CK-6746 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CK-6748         TCGA-CK-6751         TCGA-CL-5917 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-4743         TCGA-CM-4744 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-4746         TCGA-CM-4747         TCGA-CM-4752 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-5341         TCGA-CM-5344         TCGA-CM-5348 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-5349         TCGA-CM-5860         TCGA-CM-5861 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-5862         TCGA-CM-5863         TCGA-CM-5864 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-5868         TCGA-CM-6161         TCGA-CM-6162 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6163         TCGA-CM-6164         TCGA-CM-6165 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6166         TCGA-CM-6167         TCGA-CM-6168 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6169         TCGA-CM-6170         TCGA-CM-6171 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6172         TCGA-CM-6675         TCGA-CM-6676 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-5538 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-5539         TCGA-D5-5540         TCGA-D5-5541 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6529         TCGA-D5-6532         TCGA-D5-6533 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6535         TCGA-D5-6536 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6537         TCGA-D5-6538         TCGA-D5-6539 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6540         TCGA-D5-6541         TCGA-D5-6898 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6920         TCGA-D5-6922         TCGA-D5-6923 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6924         TCGA-D5-6926         TCGA-D5-6927 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6928         TCGA-D5-6929         TCGA-D5-6930 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6931         TCGA-D5-6932         TCGA-D5-7000 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A0X9         TCGA-DM-A0XD         TCGA-DM-A0XF 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D4         TCGA-DM-A1D6 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1DB         TCGA-DM-A1HA 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1HB         TCGA-DM-A282         TCGA-DM-A285 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A28C         TCGA-DM-A28E         TCGA-DM-A28F 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A28G         TCGA-DM-A28H         TCGA-DM-A28K 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DF         TCGA-DY-A1DG 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EI-6506 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6510 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6703         TCGA-F4-6704 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6806         TCGA-F4-6807 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F4-6854 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G5-6641 
"NUDT16L1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NUDT16L1 MUTATED        0      2      1
  NUDT16L1 WILD-TYPE     89    158    137
D2007V5, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                1                137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  NUDT16L1 MUTATED        1      2      0
  NUDT16L1 WILD-TYPE    181    131     72
D2007V6, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                1                181
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT16L1 MUTATED        0      1      1      1
  NUDT16L1 WILD-TYPE    112     95     91    185
D2007V7, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT16L1 MUTATED        0      1      1      0      0      0      1
  NUDT16L1 WILD-TYPE     60     49     48     40     63    125     98
D2007V8, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                1                 49
  CLUS_3                1                 48
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT16L1 MUTATED        1      1      0      1
  NUDT16L1 WILD-TYPE    129     77     68    195
D2007V9, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                1                195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUDT16L1 MUTATED        1      1      0      0      1      0      0      0
  NUDT16L1 WILD-TYPE     39     61     28     80     68     48     43     28
                    vv
clus                 CLUS_9
  NUDT16L1 MUTATED        0
  NUDT16L1 WILD-TYPE     74
D2007V10, multiclass
        clus
vv       NUDT16L1 MUTATED NUDT16L1 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 61
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT16L1 MUTATED        1      0      0      0
  NUDT16L1 WILD-TYPE     32     31     27     19
D2007V11, multiclass
[1] "Remove cluster labels:" "NUDT16L1 MUTATED"      
clus
  NUDT16L1 MUTATED NUDT16L1 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G5-6641 
"NUDT16L1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT16L1 MUTATED        1      0      0      0
  NUDT16L1 WILD-TYPE     53     10     24     22
D2007V12, multiclass
[1] "Remove cluster labels:" "NUDT16L1 MUTATED"      
clus
  NUDT16L1 MUTATED NUDT16L1 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" "NUDT16L1 WILD-TYPE" 
        TCGA-G5-6641 
"NUDT16L1 WILD-TYPE" 

Clustering(2008) Variable = SEMA3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA3A MUTATED        1      1      0      4
  SEMA3A WILD-TYPE     45     57     64     39
D2008V1, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEMA3A MUTATED        3      2      1
  SEMA3A WILD-TYPE     48     81     76
D2008V2, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA3A MUTATED       12      4      0      0
  SEMA3A WILD-TYPE    166    179    101     20
D2008V3, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1             12              166
  CLUS_2              4              179
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEMA3A MUTATED        5      2      3
  SEMA3A WILD-TYPE     82     78     97
D2008V4, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              5               82
  CLUS_2              2               78
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEMA3A MUTATED        1      6      8
  SEMA3A WILD-TYPE     88    154    130
D2008V5, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEMA3A MUTATED        8      7      0
  SEMA3A WILD-TYPE    174    126     72
D2008V6, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              8              174
  CLUS_2              7              126
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA3A MUTATED        3      1      6      6
  SEMA3A WILD-TYPE    109     95     86    180
D2008V7, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              3              109
  CLUS_2              1               95
  CLUS_3              6               86
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEMA3A MUTATED        3      0      5      0      2      1      5
  SEMA3A WILD-TYPE     57     50     44     40     61    124     94
D2008V8, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              3               57
  CLUS_2              0               50
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA3A MUTATED        4      3      2      6
  SEMA3A WILD-TYPE    126     75     66    190
D2008V9, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              4              126
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SEMA3A MUTATED        0      5      1      1      6      1      0      0
  SEMA3A WILD-TYPE     40     57     27     79     63     47     43     28
                  vv
clus               CLUS_9
  SEMA3A MUTATED        1
  SEMA3A WILD-TYPE     73
D2008V10, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              5               57
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA3A MUTATED        2      1      0      2
  SEMA3A WILD-TYPE     31     30     27     17
D2008V11, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA3A MUTATED        3      0      1      1
  SEMA3A WILD-TYPE     51     10     23     21
D2008V12, multiclass
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2009) Variable = PCDHGA4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA4 MUTATED        2      0      0      2
  PCDHGA4 WILD-TYPE     44     58     64     41
D2009V1, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA4 MUTATED        4      0      0
  PCDHGA4 WILD-TYPE     47     83     77
D2009V2, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA4 MUTATED       15      2      2      0
  PCDHGA4 WILD-TYPE    163    181     99     20
D2009V3, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1              15               163
  CLUS_2               2               181
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA4 MUTATED        6      2      6
  PCDHGA4 WILD-TYPE     81     78     94
D2009V4, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               2                78
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA4 MUTATED        7      2     10
  PCDHGA4 WILD-TYPE     82    158    128
D2009V5, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               7                82
  CLUS_2               2               158
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGA4 MUTATED        7      4      8
  PCDHGA4 WILD-TYPE    175    129     64
D2009V6, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               4               129
  CLUS_3               8                64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA4 MUTATED        2      7      5      5
  PCDHGA4 WILD-TYPE    110     89     87    181
D2009V7, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               7                89
  CLUS_3               5                87
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDHGA4 MUTATED        0      2      6      2      4      0      5
  PCDHGA4 WILD-TYPE     60     48     43     38     59    125     94
D2009V8, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               6                43
  CLUS_4               2                38
  CLUS_5               4                59
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA4 MUTATED        5      5      1      7
  PCDHGA4 WILD-TYPE    125     73     67    189
D2009V9, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               5                73
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDHGA4 MUTATED        3      4      1      0      8      0      1      0
  PCDHGA4 WILD-TYPE     37     58     27     80     61     48     42     28
                   vv
clus                CLUS_9
  PCDHGA4 MUTATED        1
  PCDHGA4 WILD-TYPE     73
D2009V10, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               3                37
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               8                61
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA4 MUTATED        3      0      0      3
  PCDHGA4 WILD-TYPE     30     31     27     16
D2009V11, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGA4 MUTATED        4      0      1      1
  PCDHGA4 WILD-TYPE     50     10     23     21
D2009V12, multiclass
        clus
vv       PCDHGA4 MUTATED PCDHGA4 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2010) Variable = SNX33 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX33 MUTATED        0      1      1      1
  SNX33 WILD-TYPE     46     57     63     42
D2010V1, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX33 MUTATED        0      3      0
  SNX33 WILD-TYPE     51     80     77
D2010V2, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             3              80
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX33 MUTATED        7      3      0      1
  SNX33 WILD-TYPE    171    180    101     19
D2010V3, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX33 MUTATED        3      0      4
  SNX33 WILD-TYPE     84     80     96
D2010V4, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX33 MUTATED        4      4      1
  SNX33 WILD-TYPE     85    156    137
D2010V5, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNX33 MUTATED        3      4      2
  SNX33 WILD-TYPE    179    129     70
D2010V6, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX33 MUTATED        0      2      4      5
  SNX33 WILD-TYPE    112     94     88    181
D2010V7, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SNX33 MUTATED        0      0      4      1      1      2      3
  SNX33 WILD-TYPE     60     50     45     39     62    123     96
D2010V8, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX33 MUTATED        4      1      1      5
  SNX33 WILD-TYPE    126     77     67    191
D2010V9, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SNX33 MUTATED        0      1      1      2      4      0      1      0
  SNX33 WILD-TYPE     40     61     27     78     65     48     42     28
                 vv
clus              CLUS_9
  SNX33 MUTATED        2
  SNX33 WILD-TYPE     72
D2010V10, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX33 MUTATED        1      1      0      3
  SNX33 WILD-TYPE     32     30     27     16
D2010V11, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNX33 MUTATED        3      0      1      1
  SNX33 WILD-TYPE     51     10     23     21
D2010V12, multiclass
        clus
vv       SNX33 MUTATED SNX33 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2011) Variable = BATF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF3 MUTATED        0      0      0      1
  BATF3 WILD-TYPE     46     58     64     42
D2011V1, multiclass
[1] "Remove cluster labels:" "BATF3 MUTATED"         
clus
  BATF3 MUTATED BATF3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3819 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BATF3 MUTATED        0      0      1
  BATF3 WILD-TYPE     51     83     76
D2011V2, multiclass
[1] "Remove cluster labels:" "BATF3 MUTATED"         
clus
  BATF3 MUTATED BATF3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3819 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BATF3 WILD-TYPE" "BATF3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF3 MUTATED        4      0      0      0
  BATF3 WILD-TYPE    174    183    101     20
D2011V3, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BATF3 MUTATED        2      0      1
  BATF3 WILD-TYPE     85     80     99
D2011V4, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BATF3 MUTATED        1      1      2
  BATF3 WILD-TYPE     88    159    136
D2011V5, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BATF3 MUTATED        2      2      0
  BATF3 WILD-TYPE    180    131     72
D2011V6, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF3 MUTATED        0      2      1      1
  BATF3 WILD-TYPE    112     94     91    185
D2011V7, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BATF3 MUTATED        0      1      2      0      0      0      1
  BATF3 WILD-TYPE     60     49     47     40     63    125     98
D2011V8, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF3 MUTATED        1      1      0      2
  BATF3 WILD-TYPE    129     77     68    194
D2011V9, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BATF3 MUTATED        0      0      0      0      2      0      0      1
  BATF3 WILD-TYPE     40     62     28     80     67     48     43     27
                 vv
clus              CLUS_9
  BATF3 MUTATED        1
  BATF3 WILD-TYPE     73
D2011V10, multiclass
        clus
vv       BATF3 MUTATED BATF3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF3 MUTATED        0      0      0      0
  BATF3 WILD-TYPE     33     31     27     19
D2011V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BATF3 MUTATED        0      0      0      0
  BATF3 WILD-TYPE     54     10     24     22
D2011V12, multiclass

Clustering(2012) Variable = KBTBD8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD8 MUTATED        1      0      0      2
  KBTBD8 WILD-TYPE     45     58     64     41
D2012V1, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD8 MUTATED        1      1      1
  KBTBD8 WILD-TYPE     50     82     76
D2012V2, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD8 MUTATED        6      1      0      1
  KBTBD8 WILD-TYPE    172    182    101     19
D2012V3, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD8 MUTATED        3      0      2
  KBTBD8 WILD-TYPE     84     80     98
D2012V4, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD8 MUTATED        1      3      2
  KBTBD8 WILD-TYPE     88    157    136
D2012V5, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD8 MUTATED        4      2      0
  KBTBD8 WILD-TYPE    178    131     72
D2012V6, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD8 MUTATED        1      2      1      4
  KBTBD8 WILD-TYPE    111     94     91    182
D2012V7, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KBTBD8 MUTATED        1      0      3      1      0      1      2
  KBTBD8 WILD-TYPE     59     50     46     39     63    124     97
D2012V8, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD8 MUTATED        3      1      0      3
  KBTBD8 WILD-TYPE    127     77     68    193
D2012V9, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KBTBD8 MUTATED        3      0      0      1      2      0      0      0
  KBTBD8 WILD-TYPE     37     62     28     79     67     48     43     28
                  vv
clus               CLUS_9
  KBTBD8 MUTATED        1
  KBTBD8 WILD-TYPE     73
D2012V10, multiclass
        clus
vv       KBTBD8 MUTATED KBTBD8 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD8 MUTATED        1      0      0      0
  KBTBD8 WILD-TYPE     32     31     27     19
D2012V11, multiclass
[1] "Remove cluster labels:" "KBTBD8 MUTATED"        
clus
  KBTBD8 MUTATED KBTBD8 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-G5-6641 
"KBTBD8 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD8 MUTATED        1      0      0      0
  KBTBD8 WILD-TYPE     53     10     24     22
D2012V12, multiclass
[1] "Remove cluster labels:" "KBTBD8 MUTATED"        
clus
  KBTBD8 MUTATED KBTBD8 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" "KBTBD8 WILD-TYPE" 
      TCGA-G5-6641 
"KBTBD8 WILD-TYPE" 

Clustering(2013) Variable = RHBDD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHBDD1 MUTATED        1      2      0      1
  RHBDD1 WILD-TYPE     45     56     64     42
D2013V1, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RHBDD1 MUTATED        1      1      2
  RHBDD1 WILD-TYPE     50     82     75
D2013V2, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHBDD1 MUTATED        5      2      0      1
  RHBDD1 WILD-TYPE    173    181    101     19
D2013V3, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RHBDD1 MUTATED        3      1      1
  RHBDD1 WILD-TYPE     84     79     99
D2013V4, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RHBDD1 MUTATED        4      2      1
  RHBDD1 WILD-TYPE     85    158    137
D2013V5, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              2              158
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RHBDD1 MUTATED        4      2      1
  RHBDD1 WILD-TYPE    178    131     71
D2013V6, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHBDD1 MUTATED        4      1      1      2
  RHBDD1 WILD-TYPE    108     95     91    184
D2013V7, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHBDD1 MUTATED        1      0      1      2      1      2      1
  RHBDD1 WILD-TYPE     59     50     48     38     62    123     98
D2013V8, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              2               38
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHBDD1 MUTATED        2      1      2      3
  RHBDD1 WILD-TYPE    128     77     66    193
D2013V9, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RHBDD1 MUTATED        2      1      0      1      2      1      0      0
  RHBDD1 WILD-TYPE     38     61     28     79     67     47     43     28
                  vv
clus               CLUS_9
  RHBDD1 MUTATED        1
  RHBDD1 WILD-TYPE     73
D2013V10, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHBDD1 MUTATED        1      1      1      0
  RHBDD1 WILD-TYPE     32     30     26     19
D2013V11, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHBDD1 MUTATED        1      1      0      1
  RHBDD1 WILD-TYPE     53      9     24     21
D2013V12, multiclass
        clus
vv       RHBDD1 MUTATED RHBDD1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2014) Variable = CPEB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPEB1 MUTATED        2      0      0      1
  CPEB1 WILD-TYPE     44     58     64     42
D2014V1, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPEB1 MUTATED        1      1      1
  CPEB1 WILD-TYPE     50     82     76
D2014V2, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPEB1 MUTATED        7      0      0      0
  CPEB1 WILD-TYPE    171    183    101     20
D2014V3, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPEB1 MUTATED        3      0      1
  CPEB1 WILD-TYPE     84     80     99
D2014V4, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPEB1 MUTATED        0      2      3
  CPEB1 WILD-TYPE     89    158    135
D2014V5, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPEB1 MUTATED        2      3      0
  CPEB1 WILD-TYPE    180    130     72
D2014V6, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPEB1 MUTATED        0      1      2      4
  CPEB1 WILD-TYPE    112     95     90    182
D2014V7, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPEB1 MUTATED        1      1      1      0      1      1      2
  CPEB1 WILD-TYPE     59     49     48     40     62    124     97
D2014V8, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPEB1 MUTATED        1      1      0      5
  CPEB1 WILD-TYPE    129     77     68    191
D2014V9, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CPEB1 MUTATED        0      1      0      1      3      0      0      0
  CPEB1 WILD-TYPE     40     61     28     79     66     48     43     28
                 vv
clus              CLUS_9
  CPEB1 MUTATED        2
  CPEB1 WILD-TYPE     72
D2014V10, multiclass
        clus
vv       CPEB1 MUTATED CPEB1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPEB1 MUTATED        0      1      0      0
  CPEB1 WILD-TYPE     33     30     27     19
D2014V11, multiclass
[1] "Remove cluster labels:" "CPEB1 MUTATED"         
clus
  CPEB1 MUTATED CPEB1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6674      TCGA-CM-6676 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-G5-6641 
"CPEB1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPEB1 MUTATED        1      0      0      0
  CPEB1 WILD-TYPE     53     10     24     22
D2014V12, multiclass
[1] "Remove cluster labels:" "CPEB1 MUTATED"         
clus
  CPEB1 MUTATED CPEB1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6674      TCGA-CM-6676 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" "CPEB1 WILD-TYPE" 
     TCGA-G5-6641 
"CPEB1 WILD-TYPE" 

Clustering(2015) Variable = SKIV2L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L2 MUTATED        0      0      0      3
  SKIV2L2 WILD-TYPE     46     58     64     40
D2015V1, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SKIV2L2 MUTATED        2      0      1
  SKIV2L2 WILD-TYPE     49     83     76
D2015V2, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L2 MUTATED        8      4      1      0
  SKIV2L2 WILD-TYPE    170    179    100     20
D2015V3, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               4               179
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SKIV2L2 MUTATED        2      3      5
  SKIV2L2 WILD-TYPE     85     77     95
D2015V4, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               3                77
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SKIV2L2 MUTATED        4      4      4
  SKIV2L2 WILD-TYPE     85    156    134
D2015V5, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               4               156
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SKIV2L2 MUTATED        7      3      2
  SKIV2L2 WILD-TYPE    175    130     70
D2015V6, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L2 MUTATED        4      1      5      3
  SKIV2L2 WILD-TYPE    108     95     87    183
D2015V7, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               1                95
  CLUS_3               5                87
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SKIV2L2 MUTATED        3      1      5      0      2      0      2
  SKIV2L2 WILD-TYPE     57     49     44     40     61    125     97
D2015V8, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L2 MUTATED        8      1      0      3
  SKIV2L2 WILD-TYPE    122     77     68    193
D2015V9, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SKIV2L2 MUTATED        1      2      1      3      4      1      0      0
  SKIV2L2 WILD-TYPE     39     60     27     77     65     47     43     28
                   vv
clus                CLUS_9
  SKIV2L2 MUTATED        0
  SKIV2L2 WILD-TYPE     74
D2015V10, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               4                65
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L2 MUTATED        1      2      1      2
  SKIV2L2 WILD-TYPE     32     29     26     17
D2015V11, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L2 MUTATED        3      0      2      1
  SKIV2L2 WILD-TYPE     51     10     22     21
D2015V12, multiclass
        clus
vv       SKIV2L2 MUTATED SKIV2L2 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2016) Variable = AMPD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        4      0      0      4
  AMPD1 WILD-TYPE     42     58     64     39
D2016V1, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        5      1      2
  AMPD1 WILD-TYPE     46     82     75
D2016V2, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED       15      1      1      1
  AMPD1 WILD-TYPE    163    182    100     19
D2016V3, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        8      0      2
  AMPD1 WILD-TYPE     79     80     98
D2016V4, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        3      7      5
  AMPD1 WILD-TYPE     86    153    133
D2016V5, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD1 MUTATED        7      7      1
  AMPD1 WILD-TYPE    175    126     71
D2016V6, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        0      6      4      8
  AMPD1 WILD-TYPE    112     90     88    178
D2016V7, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             4              88
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMPD1 MUTATED        1      3      5      0      1      2      6
  AMPD1 WILD-TYPE     59     47     44     40     62    123     93
D2016V8, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        5      4      1      7
  AMPD1 WILD-TYPE    125     74     67    189
D2016V9, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AMPD1 MUTATED        2      2      1      2      5      0      3      1
  AMPD1 WILD-TYPE     38     60     27     78     64     48     40     27
                 vv
clus              CLUS_9
  AMPD1 MUTATED        1
  AMPD1 WILD-TYPE     73
D2016V10, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        3      0      1      2
  AMPD1 WILD-TYPE     30     31     26     17
D2016V11, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD1 MUTATED        4      0      2      0
  AMPD1 WILD-TYPE     50     10     22     22
D2016V12, multiclass
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2017) Variable = MIPEP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        0      0      0      3
  MIPEP WILD-TYPE     46     58     64     40
D2017V1, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        2      0      1
  MIPEP WILD-TYPE     49     83     76
D2017V2, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        8      0      1      0
  MIPEP WILD-TYPE    170    183    100     20
D2017V3, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        2      0      3
  MIPEP WILD-TYPE     85     80     97
D2017V4, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        2      4      3
  MIPEP WILD-TYPE     87    156    135
D2017V5, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MIPEP MUTATED        3      5      1
  MIPEP WILD-TYPE    179    128     71
D2017V6, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        0      2      2      5
  MIPEP WILD-TYPE    112     94     90    181
D2017V7, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MIPEP MUTATED        2      2      0      0      1      0      4
  MIPEP WILD-TYPE     58     48     49     40     62    125     95
D2017V8, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        4      0      0      5
  MIPEP WILD-TYPE    126     78     68    191
D2017V9, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MIPEP MUTATED        1      1      1      0      4      0      1      0
  MIPEP WILD-TYPE     39     61     27     80     65     48     42     28
                 vv
clus              CLUS_9
  MIPEP MUTATED        1
  MIPEP WILD-TYPE     73
D2017V10, multiclass
        clus
vv       MIPEP MUTATED MIPEP WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        1      0      0      1
  MIPEP WILD-TYPE     32     31     27     18
D2017V11, multiclass
[1] "Remove cluster labels:" "MIPEP MUTATED"         
clus
  MIPEP MUTATED MIPEP WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6922 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIPEP MUTATED        2      0      0      0
  MIPEP WILD-TYPE     52     10     24     22
D2017V12, multiclass
[1] "Remove cluster labels:" "MIPEP MUTATED"         
clus
  MIPEP MUTATED MIPEP WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6922 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" "MIPEP WILD-TYPE" 

Clustering(2018) Variable = KRT39 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT39 MUTATED        1      0      0      1
  KRT39 WILD-TYPE     45     58     64     42
D2018V1, multiclass
[1] "Remove cluster labels:" "KRT39 MUTATED"         
clus
  KRT39 MUTATED KRT39 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3864      TCGA-AA-3866 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AY-4071 
"KRT39 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT39 MUTATED        1      0      1
  KRT39 WILD-TYPE     50     83     76
D2018V2, multiclass
[1] "Remove cluster labels:" "KRT39 MUTATED"         
clus
  KRT39 MUTATED KRT39 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3864      TCGA-AA-3866 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AY-4071 
"KRT39 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT39 MUTATED        3      3      0      0
  KRT39 WILD-TYPE    175    180    101     20
D2018V3, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT39 MUTATED        2      1      2
  KRT39 WILD-TYPE     85     79     98
D2018V4, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT39 MUTATED        1      3      3
  KRT39 WILD-TYPE     88    157    135
D2018V5, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT39 MUTATED        4      2      1
  KRT39 WILD-TYPE    178    131     71
D2018V6, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT39 MUTATED        2      2      2      1
  KRT39 WILD-TYPE    110     94     90    185
D2018V7, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT39 MUTATED        3      1      0      0      1      0      2
  KRT39 WILD-TYPE     57     49     49     40     62    125     97
D2018V8, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT39 MUTATED        3      0      1      3
  KRT39 WILD-TYPE    127     78     67    193
D2018V9, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KRT39 MUTATED        0      1      2      1      1      0      1      0
  KRT39 WILD-TYPE     40     61     26     79     68     48     42     28
                 vv
clus              CLUS_9
  KRT39 MUTATED        1
  KRT39 WILD-TYPE     73
D2018V10, multiclass
        clus
vv       KRT39 MUTATED KRT39 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT39 MUTATED        0      0      0      2
  KRT39 WILD-TYPE     33     31     27     17
D2018V11, multiclass
[1] "Remove cluster labels:" "KRT39 MUTATED"         
clus
  KRT39 MUTATED KRT39 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT39 MUTATED        1      0      1      0
  KRT39 WILD-TYPE     53     10     23     22
D2018V12, multiclass
[1] "Remove cluster labels:" "KRT39 MUTATED"         
clus
  KRT39 MUTATED KRT39 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" "KRT39 WILD-TYPE" 

Clustering(2019) Variable = DDX11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        1      0      0      0
  DDX11 WILD-TYPE     45     58     64     43
D2019V1, multiclass
[1] "Remove cluster labels:" "DDX11 MUTATED"         
clus
  DDX11 MUTATED DDX11 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        1      0      0
  DDX11 WILD-TYPE     50     83     77
D2019V2, multiclass
[1] "Remove cluster labels:" "DDX11 MUTATED"         
clus
  DDX11 MUTATED DDX11 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        8      0      0      0
  DDX11 WILD-TYPE    170    183    101     20
D2019V3, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        1      0      6
  DDX11 WILD-TYPE     86     80     94
D2019V4, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        2      3      3
  DDX11 WILD-TYPE     87    157    135
D2019V5, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      3      2
  DDX11 WILD-TYPE    179    130     70
D2019V6, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        0      6      1      1
  DDX11 WILD-TYPE    112     90     91    185
D2019V7, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             6              90
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX11 MUTATED        0      2      4      0      0      0      2
  DDX11 WILD-TYPE     60     48     45     40     63    125     97
D2019V8, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        4      1      0      3
  DDX11 WILD-TYPE    126     77     68    193
D2019V9, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DDX11 MUTATED        2      1      0      1      3      0      1      0
  DDX11 WILD-TYPE     38     61     28     79     66     48     42     28
                 vv
clus              CLUS_9
  DDX11 MUTATED        0
  DDX11 WILD-TYPE     74
D2019V10, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        1      0      0      0
  DDX11 WILD-TYPE     32     31     27     19
D2019V11, multiclass
[1] "Remove cluster labels:" "DDX11 MUTATED"         
clus
  DDX11 MUTATED DDX11 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-G5-6641 
"DDX11 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        1      0      0      0
  DDX11 WILD-TYPE     53     10     24     22
D2019V12, multiclass
[1] "Remove cluster labels:" "DDX11 MUTATED"         
clus
  DDX11 MUTATED DDX11 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" "DDX11 WILD-TYPE" 
     TCGA-G5-6641 
"DDX11 WILD-TYPE" 

Clustering(2020) Variable = VEPH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEPH1 MUTATED        5      0      1      2
  VEPH1 WILD-TYPE     41     58     63     41
D2020V1, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEPH1 MUTATED        6      1      1
  VEPH1 WILD-TYPE     45     82     76
D2020V2, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             6              45
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEPH1 MUTATED       15      2      1      1
  VEPH1 WILD-TYPE    163    181    100     19
D2020V3, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEPH1 MUTATED        6      4      2
  VEPH1 WILD-TYPE     81     76     98
D2020V4, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEPH1 MUTATED        1      6     11
  VEPH1 WILD-TYPE     88    154    127
D2020V5, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3            11             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEPH1 MUTATED       11      4      3
  VEPH1 WILD-TYPE    171    129     69
D2020V6, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1            11             171
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEPH1 MUTATED        4      4      4      8
  VEPH1 WILD-TYPE    108     92     88    178
D2020V7, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             4              92
  CLUS_3             4              88
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VEPH1 MUTATED        3      1      6      0      2      1      7
  VEPH1 WILD-TYPE     57     49     43     40     61    124     92
D2020V8, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEPH1 MUTATED        4      4      2     10
  VEPH1 WILD-TYPE    126     74     66    186
D2020V9, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VEPH1 MUTATED        0      4      1      3      8      2      1      0
  VEPH1 WILD-TYPE     40     58     27     77     61     46     42     28
                 vv
clus              CLUS_9
  VEPH1 MUTATED        1
  VEPH1 WILD-TYPE     73
D2020V10, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             8              61
  CLUS_6             2              46
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEPH1 MUTATED        1      0      1      4
  VEPH1 WILD-TYPE     32     31     26     15
D2020V11, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEPH1 MUTATED        2      1      2      1
  VEPH1 WILD-TYPE     52      9     22     21
D2020V12, multiclass
        clus
vv       VEPH1 MUTATED VEPH1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2021) Variable = OR2M5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        2      0      1      2
  OR2M5 WILD-TYPE     44     58     63     41
D2021V1, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M5 MUTATED        2      2      1
  OR2M5 WILD-TYPE     49     81     76
D2021V2, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        6      3      3      0
  OR2M5 WILD-TYPE    172    180     98     20
D2021V3, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M5 MUTATED        5      1      1
  OR2M5 WILD-TYPE     82     79     99
D2021V4, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M5 MUTATED        1      3      6
  OR2M5 WILD-TYPE     88    157    132
D2021V5, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M5 MUTATED        5      5      0
  OR2M5 WILD-TYPE    177    128     72
D2021V6, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        3      1      3      5
  OR2M5 WILD-TYPE    109     95     89    181
D2021V7, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2M5 MUTATED        2      3      1      0      2      1      3
  OR2M5 WILD-TYPE     58     47     48     40     61    124     96
D2021V8, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        3      2      2      5
  OR2M5 WILD-TYPE    127     76     66    191
D2021V9, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             2              66
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2M5 MUTATED        1      2      1      0      1      1      3      2
  OR2M5 WILD-TYPE     39     60     27     80     68     47     40     26
                 vv
clus              CLUS_9
  OR2M5 MUTATED        1
  OR2M5 WILD-TYPE     73
D2021V10, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             2              26
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        2      0      2      2
  OR2M5 WILD-TYPE     31     31     25     17
D2021V11, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        3      0      1      2
  OR2M5 WILD-TYPE     51     10     23     20
D2021V12, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2022) Variable = RBP3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBP3 MUTATED        1      1      0      2
  RBP3 WILD-TYPE     45     57     64     41
D2022V1, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBP3 MUTATED        1      1      2
  RBP3 WILD-TYPE     50     82     75
D2022V2, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBP3 MUTATED       12      2      0      0
  RBP3 WILD-TYPE    166    181    101     20
D2022V3, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBP3 MUTATED        5      1      4
  RBP3 WILD-TYPE     82     79     96
D2022V4, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            1             79
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBP3 MUTATED        0      5      7
  RBP3 WILD-TYPE     89    155    131
D2022V5, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBP3 MUTATED        6      5      1
  RBP3 WILD-TYPE    176    128     71
D2022V6, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBP3 MUTATED        1      5      3      5
  RBP3 WILD-TYPE    111     91     89    181
D2022V7, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            5             91
  CLUS_3            3             89
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBP3 MUTATED        1      1      6      0      2      0      4
  RBP3 WILD-TYPE     59     49     43     40     61    125     95
D2022V8, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBP3 MUTATED        7      2      0      5
  RBP3 WILD-TYPE    123     76     68    191
D2022V9, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RBP3 MUTATED        0      2      2      1      8      0      0      0      1
  RBP3 WILD-TYPE     40     60     26     79     61     48     43     28     73
D2022V10, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            8             61
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBP3 MUTATED        1      1      0      1
  RBP3 WILD-TYPE     32     30     27     18
D2022V11, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBP3 MUTATED        2      0      1      0
  RBP3 WILD-TYPE     52     10     23     22
D2022V12, multiclass
        clus
vv       RBP3 MUTATED RBP3 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2023) Variable = SGCE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGCE MUTATED        2      0      2      1
  SGCE WILD-TYPE     44     58     62     42
D2023V1, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            2             62
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGCE MUTATED        2      2      1
  SGCE WILD-TYPE     49     81     76
D2023V2, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGCE MUTATED        5      1      1      1
  SGCE WILD-TYPE    173    182    100     19
D2023V3, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGCE MUTATED        3      0      0
  SGCE WILD-TYPE     84     80    100
D2023V4, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGCE MUTATED        1      1      2
  SGCE WILD-TYPE     88    159    136
D2023V5, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGCE MUTATED        3      1      0
  SGCE WILD-TYPE    179    132     72
D2023V6, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            3            179
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGCE MUTATED        0      2      2      4
  SGCE WILD-TYPE    112     94     90    182
D2023V7, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SGCE MUTATED        0      0      1      2      0      1      4
  SGCE WILD-TYPE     60     50     48     38     63    124     95
D2023V8, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            2             38
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGCE MUTATED        1      1      2      4
  SGCE WILD-TYPE    129     77     66    192
D2023V9, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SGCE MUTATED        0      0      1      1      1      1      1      1      2
  SGCE WILD-TYPE     40     62     27     79     68     47     42     27     72
D2023V10, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGCE MUTATED        1      0      2      0
  SGCE WILD-TYPE     32     31     25     19
D2023V11, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            2             25
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGCE MUTATED        1      0      2      0
  SGCE WILD-TYPE     53     10     22     22
D2023V12, multiclass
        clus
vv       SGCE MUTATED SGCE WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2024) Variable = ZNF622 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF622 MUTATED        1      0      0      1
  ZNF622 WILD-TYPE     45     58     64     42
D2024V1, multiclass
[1] "Remove cluster labels:" "ZNF622 MUTATED"        
clus
  ZNF622 MUTATED ZNF622 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF622 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF622 MUTATED        1      0      1
  ZNF622 WILD-TYPE     50     83     76
D2024V2, multiclass
[1] "Remove cluster labels:" "ZNF622 MUTATED"        
clus
  ZNF622 MUTATED ZNF622 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3812 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" "ZNF622 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF622 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF622 MUTATED        5      1      3      0
  ZNF622 WILD-TYPE    173    182     98     20
D2024V3, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              1              182
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF622 MUTATED        1      2      4
  ZNF622 WILD-TYPE     86     78     96
D2024V4, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF622 MUTATED        1      3      2
  ZNF622 WILD-TYPE     88    157    136
D2024V5, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF622 MUTATED        2      3      1
  ZNF622 WILD-TYPE    180    130     71
D2024V6, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF622 MUTATED        0      2      4      3
  ZNF622 WILD-TYPE    112     94     88    183
D2024V7, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF622 MUTATED        1      0      4      0      2      1      1
  ZNF622 WILD-TYPE     59     50     45     40     61    124     98
D2024V8, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF622 MUTATED        5      1      0      3
  ZNF622 WILD-TYPE    125     77     68    193
D2024V9, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF622 MUTATED        1      2      1      1      4      0      0      0
  ZNF622 WILD-TYPE     39     60     27     79     65     48     43     28
                  vv
clus               CLUS_9
  ZNF622 MUTATED        0
  ZNF622 WILD-TYPE     74
D2024V10, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF622 MUTATED        2      0      0      1
  ZNF622 WILD-TYPE     31     31     27     18
D2024V11, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF622 MUTATED        2      0      1      0
  ZNF622 WILD-TYPE     52     10     23     22
D2024V12, multiclass
        clus
vv       ZNF622 MUTATED ZNF622 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2025) Variable = FAM160B1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B1 MUTATED        1      0      0      2
  FAM160B1 WILD-TYPE     45     58     64     41
D2025V1, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B1 MUTATED        0      2      1
  FAM160B1 WILD-TYPE     51     81     76
D2025V2, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                0                 51
  CLUS_2                2                 81
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B1 MUTATED        9      0      0      0
  FAM160B1 WILD-TYPE    169    183    101     20
D2025V3, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B1 MUTATED        0      1      4
  FAM160B1 WILD-TYPE     87     79     96
D2025V4, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                1                 79
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B1 MUTATED        2      4      1
  FAM160B1 WILD-TYPE     87    156    137
D2025V5, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                4                156
  CLUS_3                1                137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FAM160B1 MUTATED        0      5      2
  FAM160B1 WILD-TYPE    182    128     70
D2025V6, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                0                182
  CLUS_2                5                128
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B1 MUTATED        1      4      0      4
  FAM160B1 WILD-TYPE    111     92     92    182
D2025V7, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                4                 92
  CLUS_3                0                 92
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM160B1 MUTATED        2      1      0      2      0      1      3
  FAM160B1 WILD-TYPE     58     49     49     38     63    124     96
D2025V8, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                1                 49
  CLUS_3                0                 49
  CLUS_4                2                 38
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B1 MUTATED        3      0      0      6
  FAM160B1 WILD-TYPE    127     78     68    190
D2025V9, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                6                190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM160B1 MUTATED        2      0      1      2      3      1      0      0
  FAM160B1 WILD-TYPE     38     62     27     78     66     47     43     28
                    vv
clus                 CLUS_9
  FAM160B1 MUTATED        0
  FAM160B1 WILD-TYPE     74
D2025V10, multiclass
        clus
vv       FAM160B1 MUTATED FAM160B1 WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 62
  CLUS_3                1                 27
  CLUS_4                2                 78
  CLUS_5                3                 66
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B1 MUTATED        0      0      0      0
  FAM160B1 WILD-TYPE     33     31     27     19
D2025V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM160B1 MUTATED        0      0      0      0
  FAM160B1 WILD-TYPE     54     10     24     22
D2025V12, multiclass

Clustering(2026) Variable = UBD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBD MUTATED        0      0      0      0
  UBD WILD-TYPE     46     58     64     43
D2026V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBD MUTATED        0      0      0
  UBD WILD-TYPE     51     83     77
D2026V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBD MUTATED        4      0      0      0
  UBD WILD-TYPE    174    183    101     20
D2026V3, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           4           174
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBD MUTATED        1      0      2
  UBD WILD-TYPE     86     80     98
D2026V4, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           1            86
  CLUS_2           0            80
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBD MUTATED        1      1      1
  UBD WILD-TYPE     88    159    137
D2026V5, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           1            88
  CLUS_2           1           159
  CLUS_3           1           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBD MUTATED        1      1      1
  UBD WILD-TYPE    181    132     71
D2026V6, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           1           181
  CLUS_2           1           132
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBD MUTATED        1      2      1      0
  UBD WILD-TYPE    111     94     91    186
D2026V7, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           1           111
  CLUS_2           2            94
  CLUS_3           1            91
  CLUS_4           0           186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBD MUTATED        1      1      2      0      0      0      0
  UBD WILD-TYPE     59     49     47     40     63    125     99
D2026V8, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           1            59
  CLUS_2           1            49
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBD MUTATED        3      1      0      0
  UBD WILD-TYPE    127     77     68    196
D2026V9, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           3           127
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           0           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UBD MUTATED        1      1      0      1      1      0      0      0      0
  UBD WILD-TYPE     39     61     28     79     68     48     43     28     74
D2026V10, multiclass
        clus
vv       UBD MUTATED UBD WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           1            79
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBD MUTATED        1      0      0      1
  UBD WILD-TYPE     32     31     27     18
D2026V11, multiclass
[1] "Remove cluster labels:" "UBD MUTATED"           
clus
  UBD MUTATED UBD WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6142    TCGA-A6-6649 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781    TCGA-A6-6782 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-6548    TCGA-AD-6889    TCGA-AD-6901 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687    TCGA-AF-4110 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732    TCGA-AH-6544 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196    TCGA-AZ-4323 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600    TCGA-AZ-6601 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718    TCGA-CA-6719 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624    TCGA-CK-5916 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167    TCGA-CM-6674 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBD MUTATED        2      0      0      0
  UBD WILD-TYPE     52     10     24     22
D2026V12, multiclass
[1] "Remove cluster labels:" "UBD MUTATED"           
clus
  UBD MUTATED UBD WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6142    TCGA-A6-6649 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781    TCGA-A6-6782 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-6548    TCGA-AD-6889    TCGA-AD-6901 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687    TCGA-AF-4110 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732    TCGA-AH-6544 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196    TCGA-AZ-4323 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600    TCGA-AZ-6601 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718    TCGA-CA-6719 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624    TCGA-CK-5916 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167    TCGA-CM-6674 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536    TCGA-D5-6922 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157    TCGA-DC-6158 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD    TCGA-DM-A0XF 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F    TCGA-DY-A1DC 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506    TCGA-EI-6507 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6704 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809    TCGA-F5-6464 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309    TCGA-G4-6625 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 
   TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"UBD WILD-TYPE" "UBD WILD-TYPE" "UBD WILD-TYPE" 

Clustering(2027) Variable = OR8K1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K1 MUTATED        1      1      1      2
  OR8K1 WILD-TYPE     45     57     63     41
D2027V1, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K1 MUTATED        1      2      2
  OR8K1 WILD-TYPE     50     81     75
D2027V2, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K1 MUTATED       10      2      1      0
  OR8K1 WILD-TYPE    168    181    100     20
D2027V3, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K1 MUTATED        2      3      3
  OR8K1 WILD-TYPE     85     77     97
D2027V4, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K1 MUTATED        2      5      3
  OR8K1 WILD-TYPE     87    155    135
D2027V5, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR8K1 MUTATED        5      4      1
  OR8K1 WILD-TYPE    177    129     71
D2027V6, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K1 MUTATED        4      2      2      5
  OR8K1 WILD-TYPE    108     94     90    181
D2027V7, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR8K1 MUTATED        0      2      3      1      1      1      5
  OR8K1 WILD-TYPE     60     48     46     39     62    124     94
D2027V8, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K1 MUTATED        6      1      1      5
  OR8K1 WILD-TYPE    124     77     67    191
D2027V9, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR8K1 MUTATED        0      3      4      1      2      1      1      0
  OR8K1 WILD-TYPE     40     59     24     79     67     47     42     28
                 vv
clus              CLUS_9
  OR8K1 MUTATED        1
  OR8K1 WILD-TYPE     73
D2027V10, multiclass
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             4              24
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K1 MUTATED        0      0      0      0
  OR8K1 WILD-TYPE     33     31     27     19
D2027V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR8K1 MUTATED        0      0      0      0
  OR8K1 WILD-TYPE     54     10     24     22
D2027V12, multiclass

Clustering(2028) Variable = TAB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB1 MUTATED        1      0      0      0
  TAB1 WILD-TYPE     45     58     64     43
D2028V1, multiclass
[1] "Remove cluster labels:" "TAB1 MUTATED"          
clus
  TAB1 MUTATED TAB1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB1 MUTATED        1      0      0
  TAB1 WILD-TYPE     50     83     77
D2028V2, multiclass
[1] "Remove cluster labels:" "TAB1 MUTATED"          
clus
  TAB1 MUTATED TAB1 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB1 MUTATED        3      0      0      0
  TAB1 WILD-TYPE    175    183    101     20
D2028V3, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB1 MUTATED        0      0      2
  TAB1 WILD-TYPE     87     80     98
D2028V4, multiclass
[1] "Remove cluster labels:" "TAB1 MUTATED"          
clus
  TAB1 MUTATED TAB1 WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6890 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CI-6622     TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CK-4950     TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-4747     TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-5348     TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-5862     TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6161     TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6165     TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6169     TCGA-CM-6170     TCGA-CM-6172     TCGA-CM-6674 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G5-6641 
"TAB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB1 MUTATED        0      1      2
  TAB1 WILD-TYPE     89    159    136
D2028V5, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAB1 MUTATED        0      3      0
  TAB1 WILD-TYPE    182    130     72
D2028V6, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            0            182
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB1 MUTATED        0      2      0      1
  TAB1 WILD-TYPE    112     94     92    185
D2028V7, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            0             92
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAB1 MUTATED        0      0      2      0      0      0      1
  TAB1 WILD-TYPE     60     50     47     40     63    125     98
D2028V8, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB1 MUTATED        2      0      0      1
  TAB1 WILD-TYPE    128     78     68    195
D2028V9, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TAB1 MUTATED        0      0      0      0      2      0      0      1      0
  TAB1 WILD-TYPE     40     62     28     80     67     48     43     27     74
D2028V10, multiclass
        clus
vv       TAB1 MUTATED TAB1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB1 MUTATED        0      0      0      1
  TAB1 WILD-TYPE     33     31     27     18
D2028V11, multiclass
[1] "Remove cluster labels:" "TAB1 MUTATED"          
clus
  TAB1 MUTATED TAB1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G5-6641 
"TAB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAB1 MUTATED        0      0      1      0
  TAB1 WILD-TYPE     54     10     23     22
D2028V12, multiclass
[1] "Remove cluster labels:" "TAB1 MUTATED"          
clus
  TAB1 MUTATED TAB1 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" "TAB1 WILD-TYPE" 
    TCGA-G5-6641 
"TAB1 WILD-TYPE" 

Clustering(2029) Variable = SLC30A8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A8 MUTATED        5      0      0      1
  SLC30A8 WILD-TYPE     41     58     64     42
D2029V1, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               5                41
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC30A8 MUTATED        4      0      2
  SLC30A8 WILD-TYPE     47     83     75
D2029V2, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               0                83
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A8 MUTATED        9      4      3      0
  SLC30A8 WILD-TYPE    169    179     98     20
D2029V3, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               4               179
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC30A8 MUTATED        4      2      4
  SLC30A8 WILD-TYPE     83     78     96
D2029V4, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               4                83
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC30A8 MUTATED        3      5      6
  SLC30A8 WILD-TYPE     86    155    132
D2029V5, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               5               155
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC30A8 MUTATED        6      5      3
  SLC30A8 WILD-TYPE    176    128     69
D2029V6, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A8 MUTATED        3      5      2      7
  SLC30A8 WILD-TYPE    109     91     90    179
D2029V7, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               5                91
  CLUS_3               2                90
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC30A8 MUTATED        1      2      1      5      2      0      6
  SLC30A8 WILD-TYPE     59     48     48     35     61    125     93
D2029V8, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               5                35
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A8 MUTATED        6      3      1      7
  SLC30A8 WILD-TYPE    124     75     67    189
D2029V9, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               3                75
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC30A8 MUTATED        2      2      0      0      7      2      3      1
  SLC30A8 WILD-TYPE     38     60     28     80     62     46     40     27
                   vv
clus                CLUS_9
  SLC30A8 MUTATED        0
  SLC30A8 WILD-TYPE     74
D2029V10, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               7                62
  CLUS_6               2                46
  CLUS_7               3                40
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A8 MUTATED        1      2      0      0
  SLC30A8 WILD-TYPE     32     29     27     19
D2029V11, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                29
  CLUS_3               0                27
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A8 MUTATED        1      0      0      2
  SLC30A8 WILD-TYPE     53     10     24     20
D2029V12, multiclass
        clus
vv       SLC30A8 MUTATED SLC30A8 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2030) Variable = MPZL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPZL1 MUTATED        1      0      0      0
  MPZL1 WILD-TYPE     45     58     64     43
D2030V1, multiclass
[1] "Remove cluster labels:" "MPZL1 MUTATED"         
clus
  MPZL1 MUTATED MPZL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPZL1 MUTATED        1      0      0
  MPZL1 WILD-TYPE     50     83     77
D2030V2, multiclass
[1] "Remove cluster labels:" "MPZL1 MUTATED"         
clus
  MPZL1 MUTATED MPZL1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516      TCGA-AA-3517 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525      TCGA-AA-3526 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MPZL1 WILD-TYPE" "MPZL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPZL1 MUTATED        4      3      0      0
  MPZL1 WILD-TYPE    174    180    101     20
D2030V3, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPZL1 MUTATED        2      1      3
  MPZL1 WILD-TYPE     85     79     97
D2030V4, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPZL1 MUTATED        0      3      3
  MPZL1 WILD-TYPE     89    157    135
D2030V5, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPZL1 MUTATED        2      3      1
  MPZL1 WILD-TYPE    180    130     71
D2030V6, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPZL1 MUTATED        2      2      1      2
  MPZL1 WILD-TYPE    110     94     91    184
D2030V7, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MPZL1 MUTATED        0      2      3      0      0      0      2
  MPZL1 WILD-TYPE     60     48     46     40     63    125     97
D2030V8, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPZL1 MUTATED        3      1      1      2
  MPZL1 WILD-TYPE    127     77     67    194
D2030V9, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MPZL1 MUTATED        0      1      0      1      3      0      2      0
  MPZL1 WILD-TYPE     40     61     28     79     66     48     41     28
                 vv
clus              CLUS_9
  MPZL1 MUTATED        0
  MPZL1 WILD-TYPE     74
D2030V10, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPZL1 MUTATED        1      0      0      2
  MPZL1 WILD-TYPE     32     31     27     17
D2030V11, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPZL1 MUTATED        2      0      1      0
  MPZL1 WILD-TYPE     52     10     23     22
D2030V12, multiclass
        clus
vv       MPZL1 MUTATED MPZL1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2031) Variable = CCDC112 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC112 MUTATED        3      0      0      2
  CCDC112 WILD-TYPE     43     58     64     41
D2031V1, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC112 MUTATED        3      1      1
  CCDC112 WILD-TYPE     48     82     76
D2031V2, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC112 MUTATED        8      0      1      0
  CCDC112 WILD-TYPE    170    183    100     20
D2031V3, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC112 MUTATED        2      0      2
  CCDC112 WILD-TYPE     85     80     98
D2031V4, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC112 MUTATED        1      0      5
  CCDC112 WILD-TYPE     88    160    133
D2031V5, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               0               160
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC112 MUTATED        4      1      1
  CCDC112 WILD-TYPE    178    132     71
D2031V6, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC112 MUTATED        0      2      2      5
  CCDC112 WILD-TYPE    112     94     90    181
D2031V7, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC112 MUTATED        0      0      2      1      1      1      4
  CCDC112 WILD-TYPE     60     50     47     39     62    124     95
D2031V8, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC112 MUTATED        3      1      0      4
  CCDC112 WILD-TYPE    127     77     68    192
D2031V9, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC112 MUTATED        1      2      1      1      3      0      0      0
  CCDC112 WILD-TYPE     39     60     27     79     66     48     43     28
                   vv
clus                CLUS_9
  CCDC112 MUTATED        0
  CCDC112 WILD-TYPE     74
D2031V10, multiclass
        clus
vv       CCDC112 MUTATED CCDC112 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC112 MUTATED        0      0      0      2
  CCDC112 WILD-TYPE     33     31     27     17
D2031V11, multiclass
[1] "Remove cluster labels:" "CCDC112 MUTATED"       
clus
  CCDC112 MUTATED CCDC112 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC112 MUTATED        2      0      0      0
  CCDC112 WILD-TYPE     52     10     24     22
D2031V12, multiclass
[1] "Remove cluster labels:" "CCDC112 MUTATED"       
clus
  CCDC112 MUTATED CCDC112 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918        TCGA-CM-5860 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676        TCGA-CM-6677 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" "CCDC112 WILD-TYPE" 

Clustering(2032) Variable = TOMM70A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOMM70A MUTATED        2      0      0      1
  TOMM70A WILD-TYPE     44     58     64     42
D2032V1, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TOMM70A MUTATED        2      1      0
  TOMM70A WILD-TYPE     49     82     77
D2032V2, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOMM70A MUTATED        7      1      1      0
  TOMM70A WILD-TYPE    171    182    100     20
D2032V3, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               7               171
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TOMM70A MUTATED        3      0      3
  TOMM70A WILD-TYPE     84     80     97
D2032V4, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TOMM70A MUTATED        1      3      6
  TOMM70A WILD-TYPE     88    157    132
D2032V5, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               1                88
  CLUS_2               3               157
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TOMM70A MUTATED        6      4      0
  TOMM70A WILD-TYPE    176    129     72
D2032V6, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               6               176
  CLUS_2               4               129
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOMM70A MUTATED        0      3      3      4
  TOMM70A WILD-TYPE    112     93     89    182
D2032V7, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TOMM70A MUTATED        0      3      2      1      0      0      4
  TOMM70A WILD-TYPE     60     47     47     39     63    125     95
D2032V8, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               0                60
  CLUS_2               3                47
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               4                95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOMM70A MUTATED        5      0      0      5
  TOMM70A WILD-TYPE    125     78     68    191
D2032V9, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               5               125
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TOMM70A MUTATED        0      0      2      1      4      0      2      0
  TOMM70A WILD-TYPE     40     62     26     79     65     48     41     28
                   vv
clus                CLUS_9
  TOMM70A MUTATED        1
  TOMM70A WILD-TYPE     73
D2032V10, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOMM70A MUTATED        2      0      0      1
  TOMM70A WILD-TYPE     31     31     27     18
D2032V11, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOMM70A MUTATED        3      0      0      0
  TOMM70A WILD-TYPE     51     10     24     22
D2032V12, multiclass
        clus
vv       TOMM70A MUTATED TOMM70A WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2033) Variable = CDHR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR3 MUTATED        0      0      0      1
  CDHR3 WILD-TYPE     46     58     64     42
D2033V1, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR3 MUTATED        0      0      1
  CDHR3 WILD-TYPE     51     83     76
D2033V2, multiclass
[1] "Remove cluster labels:" "CDHR3 MUTATED"         
clus
  CDHR3 MUTATED CDHR3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"CDHR3 WILD-TYPE" "CDHR3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR3 MUTATED       15      0      0      0
  CDHR3 WILD-TYPE    163    183    101     20
D2033V3, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1            15             163
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR3 MUTATED        9      0      5
  CDHR3 WILD-TYPE     78     80     95
D2033V4, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             0              80
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR3 MUTATED        1      4      9
  CDHR3 WILD-TYPE     88    156    129
D2033V5, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDHR3 MUTATED        8      5      1
  CDHR3 WILD-TYPE    174    128     71
D2033V6, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR3 MUTATED        0      7      6      2
  CDHR3 WILD-TYPE    112     89     86    184
D2033V7, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDHR3 MUTATED        1      2      9      0      1      0      2
  CDHR3 WILD-TYPE     59     48     40     40     62    125     97
D2033V8, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR3 MUTATED        5      5      0      5
  CDHR3 WILD-TYPE    125     73     68    191
D2033V9, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDHR3 MUTATED        2      5      0      1      5      0      0      0
  CDHR3 WILD-TYPE     38     57     28     79     64     48     43     28
                 vv
clus              CLUS_9
  CDHR3 MUTATED        2
  CDHR3 WILD-TYPE     72
D2033V10, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR3 MUTATED        3      0      0      1
  CDHR3 WILD-TYPE     30     31     27     18
D2033V11, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDHR3 MUTATED        4      0      0      0
  CDHR3 WILD-TYPE     50     10     24     22
D2033V12, multiclass
        clus
vv       CDHR3 MUTATED CDHR3 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2034) Variable = ZNF559 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF559 MUTATED        5      0      0      2
  ZNF559 WILD-TYPE     41     58     64     41
D2034V1, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF559 MUTATED        5      2      0
  ZNF559 WILD-TYPE     46     81     77
D2034V2, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF559 MUTATED       12      2      2      0
  ZNF559 WILD-TYPE    166    181     99     20
D2034V3, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF559 MUTATED        6      2      2
  ZNF559 WILD-TYPE     81     78     98
D2034V4, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF559 MUTATED        4      4      8
  ZNF559 WILD-TYPE     85    156    130
D2034V5, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF559 MUTATED        7      5      4
  ZNF559 WILD-TYPE    175    128     68
D2034V6, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              5              128
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF559 MUTATED        2      4      4      6
  ZNF559 WILD-TYPE    110     92     88    180
D2034V7, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF559 MUTATED        1      3      3      0      2      1      6
  ZNF559 WILD-TYPE     59     47     46     40     61    124     93
D2034V8, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF559 MUTATED        3      5      0      7
  ZNF559 WILD-TYPE    127     73     68    189
D2034V9, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              5               73
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF559 MUTATED        2      4      1      1      3      1      0      2
  ZNF559 WILD-TYPE     38     58     27     79     66     47     43     26
                  vv
clus               CLUS_9
  ZNF559 MUTATED        1
  ZNF559 WILD-TYPE     73
D2034V10, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF559 MUTATED        1      1      1      1
  ZNF559 WILD-TYPE     32     30     26     18
D2034V11, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF559 MUTATED        3      0      1      0
  ZNF559 WILD-TYPE     51     10     23     22
D2034V12, multiclass
        clus
vv       ZNF559 MUTATED ZNF559 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2035) Variable = MAK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAK MUTATED        1      0      0      3
  MAK WILD-TYPE     45     58     64     40
D2035V1, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           1            45
  CLUS_2           0            58
  CLUS_3           0            64
  CLUS_4           3            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAK MUTATED        3      0      1
  MAK WILD-TYPE     48     83     76
D2035V2, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           3            48
  CLUS_2           0            83
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAK MUTATED       11      0      0      1
  MAK WILD-TYPE    167    183    101     19
D2035V3, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1          11           167
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAK MUTATED        1      1      5
  MAK WILD-TYPE     86     79     95
D2035V4, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           1            86
  CLUS_2           1            79
  CLUS_3           5            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAK MUTATED        3      4      5
  MAK WILD-TYPE     86    156    133
D2035V5, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           3            86
  CLUS_2           4           156
  CLUS_3           5           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MAK MUTATED        6      4      2
  MAK WILD-TYPE    176    129     70
D2035V6, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           6           176
  CLUS_2           4           129
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAK MUTATED        1      3      3      5
  MAK WILD-TYPE    111     93     89    181
D2035V7, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           1           111
  CLUS_2           3            93
  CLUS_3           3            89
  CLUS_4           5           181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAK MUTATED        2      0      3      1      1      0      5
  MAK WILD-TYPE     58     50     46     39     62    125     94
D2035V8, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           2            58
  CLUS_2           0            50
  CLUS_3           3            46
  CLUS_4           1            39
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           5            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAK MUTATED        5      1      0      5
  MAK WILD-TYPE    125     77     68    191
D2035V9, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           5           125
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           5           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MAK MUTATED        1      2      2      0      6      0      0      0      0
  MAK WILD-TYPE     39     60     26     80     63     48     43     28     74
D2035V10, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           1            39
  CLUS_2           2            60
  CLUS_3           2            26
  CLUS_4           0            80
  CLUS_5           6            63
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAK MUTATED        1      0      0      2
  MAK WILD-TYPE     32     31     27     17
D2035V11, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           1            32
  CLUS_2           0            31
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAK MUTATED        3      0      0      0
  MAK WILD-TYPE     51     10     24     22
D2035V12, multiclass
        clus
vv       MAK MUTATED MAK WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2036) Variable = GPR156 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR156 MUTATED        2      0      0      5
  GPR156 WILD-TYPE     44     58     64     38
D2036V1, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              5               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR156 MUTATED        4      1      2
  GPR156 WILD-TYPE     47     82     75
D2036V2, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR156 MUTATED       13      1      0      0
  GPR156 WILD-TYPE    165    182    101     20
D2036V3, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR156 MUTATED        3      1      3
  GPR156 WILD-TYPE     84     79     97
D2036V4, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR156 MUTATED        1      5      6
  GPR156 WILD-TYPE     88    155    132
D2036V5, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR156 MUTATED        6      6      0
  GPR156 WILD-TYPE    176    127     72
D2036V6, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR156 MUTATED        1      4      2      7
  GPR156 WILD-TYPE    111     92     90    179
D2036V7, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              2               90
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR156 MUTATED        1      2      4      0      1      0      6
  GPR156 WILD-TYPE     59     48     45     40     62    125     93
D2036V8, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR156 MUTATED        4      2      0      7
  GPR156 WILD-TYPE    126     76     68    189
D2036V9, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR156 MUTATED        0      2      2      0      6      1      1      0
  GPR156 WILD-TYPE     40     60     26     80     63     47     42     28
                  vv
clus               CLUS_9
  GPR156 MUTATED        1
  GPR156 WILD-TYPE     73
D2036V10, multiclass
        clus
vv       GPR156 MUTATED GPR156 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              6               63
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR156 MUTATED        1      0      0      1
  GPR156 WILD-TYPE     32     31     27     18
D2036V11, multiclass
[1] "Remove cluster labels:" "GPR156 MUTATED"        
clus
  GPR156 MUTATED GPR156 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901       TCGA-AD-6963 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR156 MUTATED        1      0      1      0
  GPR156 WILD-TYPE     53     10     23     22
D2036V12, multiclass
[1] "Remove cluster labels:" "GPR156 MUTATED"        
clus
  GPR156 MUTATED GPR156 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901       TCGA-AD-6963 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-4110 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549       TCGA-AH-6643 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-5403 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" "GPR156 WILD-TYPE" 

Clustering(2037) Variable = NIT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIT2 MUTATED        0      0      1      2
  NIT2 WILD-TYPE     46     58     63     41
D2037V1, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NIT2 MUTATED        0      1      2
  NIT2 WILD-TYPE     51     82     75
D2037V2, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            0             51
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIT2 MUTATED        4      1      0      0
  NIT2 WILD-TYPE    174    182    101     20
D2037V3, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NIT2 MUTATED        1      0      1
  NIT2 WILD-TYPE     86     80     99
D2037V4, multiclass
[1] "Remove cluster labels:" "NIT2 MUTATED"          
clus
  NIT2 MUTATED NIT2 WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3510 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AA-3663     TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889     TCGA-AD-6890 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-6599     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CA-5254     TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CA-6715     TCGA-CA-6716     TCGA-CA-6718     TCGA-CA-6719 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6622 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948     TCGA-CK-4950 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913     TCGA-CK-5914 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917     TCGA-CL-5918 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G5-6641 
"NIT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NIT2 MUTATED        0      1      2
  NIT2 WILD-TYPE     89    159    136
D2037V5, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            1            159
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NIT2 MUTATED        2      1      0
  NIT2 WILD-TYPE    180    132     72
D2037V6, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            1            132
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIT2 MUTATED        0      0      2      3
  NIT2 WILD-TYPE    112     96     90    183
D2037V7, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NIT2 MUTATED        1      0      1      0      1      1      1
  NIT2 WILD-TYPE     59     50     48     40     62    124     98
D2037V8, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIT2 MUTATED        1      1      0      3
  NIT2 WILD-TYPE    129     77     68    193
D2037V9, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NIT2 MUTATED        0      2      1      0      1      0      0      0      1
  NIT2 WILD-TYPE     40     60     27     80     68     48     43     28     73
D2037V10, multiclass
        clus
vv       NIT2 MUTATED NIT2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIT2 MUTATED        0      0      0      1
  NIT2 WILD-TYPE     33     31     27     18
D2037V11, multiclass
[1] "Remove cluster labels:" "NIT2 MUTATED"          
clus
  NIT2 MUTATED NIT2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G5-6641 
"NIT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIT2 MUTATED        1      0      0      0
  NIT2 WILD-TYPE     53     10     24     22
D2037V12, multiclass
[1] "Remove cluster labels:" "NIT2 MUTATED"          
clus
  NIT2 MUTATED NIT2 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" "NIT2 WILD-TYPE" 
    TCGA-G5-6641 
"NIT2 WILD-TYPE" 

Clustering(2038) Variable = KIAA2018 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        3      0      1      5
  KIAA2018 WILD-TYPE     43     58     63     38
D2038V1, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                1                 63
  CLUS_4                5                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2018 MUTATED        4      3      2
  KIAA2018 WILD-TYPE     47     80     75
D2038V2, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                3                 80
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED       19      1      1      0
  KIAA2018 WILD-TYPE    159    182    100     20
D2038V3, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1               19                159
  CLUS_2                1                182
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2018 MUTATED        7      0      6
  KIAA2018 WILD-TYPE     80     80     94
D2038V4, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                7                 80
  CLUS_2                0                 80
  CLUS_3                6                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2018 MUTATED        2      6     10
  KIAA2018 WILD-TYPE     87    154    128
D2038V5, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                6                154
  CLUS_3               10                128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA2018 MUTATED       10      7      1
  KIAA2018 WILD-TYPE    172    126     71
D2038V6, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1               10                172
  CLUS_2                7                126
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        0      7      7      8
  KIAA2018 WILD-TYPE    112     89     85    178
D2038V7, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                7                 89
  CLUS_3                7                 85
  CLUS_4                8                178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA2018 MUTATED        1      1      9      1      2      1      7
  KIAA2018 WILD-TYPE     59     49     40     39     61    124     92
D2038V8, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                9                 40
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                7                 92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        5      6      0     10
  KIAA2018 WILD-TYPE    125     72     68    186
D2038V9, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                6                 72
  CLUS_3                0                 68
  CLUS_4               10                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA2018 MUTATED        1      7      1      1      8      0      0      0
  KIAA2018 WILD-TYPE     39     55     27     79     61     48     43     28
                    vv
clus                 CLUS_9
  KIAA2018 MUTATED        3
  KIAA2018 WILD-TYPE     71
D2038V10, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                7                 55
  CLUS_3                1                 27
  CLUS_4                1                 79
  CLUS_5                8                 61
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                3                 71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        0      1      0      3
  KIAA2018 WILD-TYPE     33     30     27     16
D2038V11, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA2018 MUTATED        3      1      0      0
  KIAA2018 WILD-TYPE     51      9     24     22
D2038V12, multiclass
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                1                  9
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2039) Variable = DCAF12L2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF12L2 MUTATED        1      2      0      2
  DCAF12L2 WILD-TYPE     45     56     64     41
D2039V1, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                1                 45
  CLUS_2                2                 56
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DCAF12L2 MUTATED        2      3      0
  DCAF12L2 WILD-TYPE     49     80     77
D2039V2, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                3                 80
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF12L2 MUTATED       11      6      2      1
  DCAF12L2 WILD-TYPE    167    177     99     19
D2039V3, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1               11                167
  CLUS_2                6                177
  CLUS_3                2                 99
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DCAF12L2 MUTATED        4      4      8
  DCAF12L2 WILD-TYPE     83     76     92
D2039V4, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                4                 76
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DCAF12L2 MUTATED        3      6      7
  DCAF12L2 WILD-TYPE     86    154    131
D2039V5, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                6                154
  CLUS_3                7                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  DCAF12L2 MUTATED        7      6      3
  DCAF12L2 WILD-TYPE    175    127     69
D2039V6, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                7                175
  CLUS_2                6                127
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF12L2 MUTATED        5      4      7      4
  DCAF12L2 WILD-TYPE    107     92     85    182
D2039V7, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                5                107
  CLUS_2                4                 92
  CLUS_3                7                 85
  CLUS_4                4                182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCAF12L2 MUTATED        1      2      6      2      4      2      3
  DCAF12L2 WILD-TYPE     59     48     43     38     59    123     96
D2039V8, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                6                 43
  CLUS_4                2                 38
  CLUS_5                4                 59
  CLUS_6                2                123
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF12L2 MUTATED       10      4      1      5
  DCAF12L2 WILD-TYPE    120     74     67    191
D2039V9, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1               10                120
  CLUS_2                4                 74
  CLUS_3                1                 67
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCAF12L2 MUTATED        4      4      2      1      5      2      0      0
  DCAF12L2 WILD-TYPE     36     58     26     79     64     46     43     28
                    vv
clus                 CLUS_9
  DCAF12L2 MUTATED        2
  DCAF12L2 WILD-TYPE     72
D2039V10, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                4                 58
  CLUS_3                2                 26
  CLUS_4                1                 79
  CLUS_5                5                 64
  CLUS_6                2                 46
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                2                 72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF12L2 MUTATED        2      2      1      2
  DCAF12L2 WILD-TYPE     31     29     26     17
D2039V11, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                2                 29
  CLUS_3                1                 26
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCAF12L2 MUTATED        5      0      1      1
  DCAF12L2 WILD-TYPE     49     10     23     21
D2039V12, multiclass
        clus
vv       DCAF12L2 MUTATED DCAF12L2 WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2040) Variable = BMP10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP10 MUTATED        2      1      1      0
  BMP10 WILD-TYPE     44     57     63     43
D2040V1, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             0              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP10 MUTATED        2      2      0
  BMP10 WILD-TYPE     49     81     77
D2040V2, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP10 MUTATED        8      4      1      1
  BMP10 WILD-TYPE    170    179    100     19
D2040V3, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP10 MUTATED        3      3      4
  BMP10 WILD-TYPE     84     77     96
D2040V4, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP10 MUTATED        2      2      7
  BMP10 WILD-TYPE     87    158    131
D2040V5, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMP10 MUTATED        7      2      2
  BMP10 WILD-TYPE    175    131     70
D2040V6, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP10 MUTATED        4      1      5      4
  BMP10 WILD-TYPE    108     95     87    182
D2040V7, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              95
  CLUS_3             5              87
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BMP10 MUTATED        5      0      2      0      3      2      2
  BMP10 WILD-TYPE     55     50     47     40     60    123     97
D2040V8, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP10 MUTATED        4      3      5      2
  BMP10 WILD-TYPE    126     75     63    194
D2040V9, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             5              63
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BMP10 MUTATED        3      2      0      2      3      0      2      0
  BMP10 WILD-TYPE     37     60     28     78     66     48     41     28
                 vv
clus              CLUS_9
  BMP10 MUTATED        2
  BMP10 WILD-TYPE     72
D2040V10, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP10 MUTATED        1      0      2      2
  BMP10 WILD-TYPE     32     31     25     17
D2040V11, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMP10 MUTATED        2      0      3      0
  BMP10 WILD-TYPE     52     10     21     22
D2040V12, multiclass
        clus
vv       BMP10 MUTATED BMP10 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2041) Variable = FOXO4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXO4 MUTATED        1      1      0      1
  FOXO4 WILD-TYPE     45     57     64     42
D2041V1, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXO4 MUTATED        1      1      1
  FOXO4 WILD-TYPE     50     82     76
D2041V2, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXO4 MUTATED       11      1      1      0
  FOXO4 WILD-TYPE    167    182    100     20
D2041V3, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1            11             167
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXO4 MUTATED        2      0      7
  FOXO4 WILD-TYPE     85     80     93
D2041V4, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXO4 MUTATED        3      5      5
  FOXO4 WILD-TYPE     86    155    133
D2041V5, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXO4 MUTATED        6      5      2
  FOXO4 WILD-TYPE    176    128     70
D2041V6, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             5             128
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXO4 MUTATED        2      6      3      2
  FOXO4 WILD-TYPE    110     90     89    184
D2041V7, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXO4 MUTATED        2      2      5      0      2      1      1
  FOXO4 WILD-TYPE     58     48     44     40     61    124     98
D2041V8, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXO4 MUTATED        4      3      0      5
  FOXO4 WILD-TYPE    126     75     68    191
D2041V9, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FOXO4 MUTATED        0      3      1      0      4      0      3      1
  FOXO4 WILD-TYPE     40     59     27     80     65     48     40     27
                 vv
clus              CLUS_9
  FOXO4 MUTATED        0
  FOXO4 WILD-TYPE     74
D2041V10, multiclass
        clus
vv       FOXO4 MUTATED FOXO4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXO4 MUTATED        1      1      0      0
  FOXO4 WILD-TYPE     32     30     27     19
D2041V11, multiclass
[1] "Remove cluster labels:" "FOXO4 MUTATED"         
clus
  FOXO4 MUTATED FOXO4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6536      TCGA-D5-6922 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXO4 MUTATED        2      0      0      0
  FOXO4 WILD-TYPE     52     10     24     22
D2041V12, multiclass
[1] "Remove cluster labels:" "FOXO4 MUTATED"         
clus
  FOXO4 MUTATED FOXO4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6536      TCGA-D5-6922 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" "FOXO4 WILD-TYPE" 

Clustering(2042) Variable = SLITRK2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK2 MUTATED        4      0      1      5
  SLITRK2 WILD-TYPE     42     58     63     38
D2042V1, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               5                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK2 MUTATED        6      1      3
  SLITRK2 WILD-TYPE     45     82     74
D2042V2, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               1                82
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK2 MUTATED       17      6      2      1
  SLITRK2 WILD-TYPE    161    177     99     19
D2042V3, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1              17               161
  CLUS_2               6               177
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK2 MUTATED        9      5      2
  SLITRK2 WILD-TYPE     78     75     98
D2042V4, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               9                78
  CLUS_2               5                75
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK2 MUTATED        4      8     10
  SLITRK2 WILD-TYPE     85    152    128
D2042V5, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               8               152
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK2 MUTATED        9      8      5
  SLITRK2 WILD-TYPE    173    125     67
D2042V6, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               9               173
  CLUS_2               8               125
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK2 MUTATED        5      2      8     11
  SLITRK2 WILD-TYPE    107     94     84    175
D2042V7, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               5               107
  CLUS_2               2                94
  CLUS_3               8                84
  CLUS_4              11               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLITRK2 MUTATED        6      0      7      0      3      0     10
  SLITRK2 WILD-TYPE     54     50     42     40     60    125     89
D2042V8, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               6                54
  CLUS_2               0                50
  CLUS_3               7                42
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               0               125
  CLUS_7              10                89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK2 MUTATED        7      5      1     13
  SLITRK2 WILD-TYPE    123     73     67    183
D2042V9, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               7               123
  CLUS_2               5                73
  CLUS_3               1                67
  CLUS_4              13               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLITRK2 MUTATED        1      6      3      3      8      1      1      1
  SLITRK2 WILD-TYPE     39     56     25     77     61     47     42     27
                   vv
clus                CLUS_9
  SLITRK2 MUTATED        2
  SLITRK2 WILD-TYPE     72
D2042V10, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               6                56
  CLUS_3               3                25
  CLUS_4               3                77
  CLUS_5               8                61
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK2 MUTATED        1      1      0      3
  SLITRK2 WILD-TYPE     32     30     27     16
D2042V11, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK2 MUTATED        2      1      2      0
  SLITRK2 WILD-TYPE     52      9     22     22
D2042V12, multiclass
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2043) Variable = MTF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF2 MUTATED        0      0      0      3
  MTF2 WILD-TYPE     46     58     64     40
D2043V1, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF2 MUTATED        1      1      1
  MTF2 WILD-TYPE     50     82     76
D2043V2, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF2 MUTATED        9      0      0      0
  MTF2 WILD-TYPE    169    183    101     20
D2043V3, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF2 MUTATED        3      0      3
  MTF2 WILD-TYPE     84     80     97
D2043V4, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF2 MUTATED        0      5      4
  MTF2 WILD-TYPE     89    155    134
D2043V5, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTF2 MUTATED        2      7      0
  MTF2 WILD-TYPE    180    126     72
D2043V6, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            7            126
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF2 MUTATED        1      3      1      4
  MTF2 WILD-TYPE    111     93     91    182
D2043V7, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTF2 MUTATED        2      2      2      0      0      0      3
  MTF2 WILD-TYPE     58     48     47     40     63    125     96
D2043V8, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF2 MUTATED        3      1      0      4
  MTF2 WILD-TYPE    127     77     68    192
D2043V9, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MTF2 MUTATED        1      1      1      0      2      1      0      0      2
  MTF2 WILD-TYPE     39     61     27     80     67     47     43     28     72
D2043V10, multiclass
        clus
vv       MTF2 MUTATED MTF2 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF2 MUTATED        0      0      0      2
  MTF2 WILD-TYPE     33     31     27     17
D2043V11, multiclass
[1] "Remove cluster labels:" "MTF2 MUTATED"          
clus
  MTF2 MUTATED MTF2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6719 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTF2 MUTATED        1      0      1      0
  MTF2 WILD-TYPE     53     10     23     22
D2043V12, multiclass
[1] "Remove cluster labels:" "MTF2 MUTATED"          
clus
  MTF2 MUTATED MTF2 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6901 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6719 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" "MTF2 WILD-TYPE" 

Clustering(2044) Variable = UBA7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA7 MUTATED        1      1      0      2
  UBA7 WILD-TYPE     45     57     64     41
D2044V1, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA7 MUTATED        2      2      0
  UBA7 WILD-TYPE     49     81     77
D2044V2, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA7 MUTATED        8      2      2      0
  UBA7 WILD-TYPE    170    181     99     20
D2044V3, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA7 MUTATED        4      0      4
  UBA7 WILD-TYPE     83     80     96
D2044V4, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA7 MUTATED        1      5      4
  UBA7 WILD-TYPE     88    155    134
D2044V5, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UBA7 MUTATED        4      5      1
  UBA7 WILD-TYPE    178    128     71
D2044V6, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA7 MUTATED        3      4      1      4
  UBA7 WILD-TYPE    109     92     91    182
D2044V7, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  UBA7 MUTATED        2      1      3      1      0      1      4
  UBA7 WILD-TYPE     58     49     46     39     63    124     95
D2044V8, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA7 MUTATED        4      1      2      2
  UBA7 WILD-TYPE    126     77     66    194
D2044V9, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  UBA7 MUTATED        0      1      3      0      2      1      1      0      1
  UBA7 WILD-TYPE     40     61     25     80     67     47     42     28     73
D2044V10, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            3             25
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA7 MUTATED        1      0      1      1
  UBA7 WILD-TYPE     32     31     26     18
D2044V11, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBA7 MUTATED        0      0      2      1
  UBA7 WILD-TYPE     54     10     22     21
D2044V12, multiclass
        clus
vv       UBA7 MUTATED UBA7 WILD-TYPE
  CLUS_1            0             54
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2045) Variable = MICAL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICAL1 MUTATED        0      0      0      1
  MICAL1 WILD-TYPE     46     58     64     42
D2045V1, multiclass
[1] "Remove cluster labels:" "MICAL1 MUTATED"        
clus
  MICAL1 MUTATED MICAL1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MICAL1 MUTATED        1      0      0
  MICAL1 WILD-TYPE     50     83     77
D2045V2, multiclass
[1] "Remove cluster labels:" "MICAL1 MUTATED"        
clus
  MICAL1 MUTATED MICAL1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"MICAL1 WILD-TYPE" "MICAL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICAL1 MUTATED        9      0      0      0
  MICAL1 WILD-TYPE    169    183    101     20
D2045V3, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MICAL1 MUTATED        4      0      3
  MICAL1 WILD-TYPE     83     80     97
D2045V4, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MICAL1 MUTATED        2      1      4
  MICAL1 WILD-TYPE     87    159    134
D2045V5, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1              159
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MICAL1 MUTATED        4      2      1
  MICAL1 WILD-TYPE    178    131     71
D2045V6, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICAL1 MUTATED        0      4      3      2
  MICAL1 WILD-TYPE    112     92     89    184
D2045V7, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              4               92
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MICAL1 MUTATED        0      2      5      0      0      0      2
  MICAL1 WILD-TYPE     60     48     44     40     63    125     97
D2045V8, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICAL1 MUTATED        4      1      0      4
  MICAL1 WILD-TYPE    126     77     68    192
D2045V9, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MICAL1 MUTATED        1      3      0      0      5      0      0      0
  MICAL1 WILD-TYPE     39     59     28     80     64     48     43     28
                  vv
clus               CLUS_9
  MICAL1 MUTATED        0
  MICAL1 WILD-TYPE     74
D2045V10, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICAL1 MUTATED        1      0      0      2
  MICAL1 WILD-TYPE     32     31     27     17
D2045V11, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICAL1 MUTATED        1      0      2      0
  MICAL1 WILD-TYPE     53     10     22     22
D2045V12, multiclass
        clus
vv       MICAL1 MUTATED MICAL1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2046) Variable = TSPYL4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL4 MUTATED        2      0      0      1
  TSPYL4 WILD-TYPE     44     58     64     42
D2046V1, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL4 MUTATED        2      1      0
  TSPYL4 WILD-TYPE     49     82     77
D2046V2, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL4 MUTATED        4      0      0      0
  TSPYL4 WILD-TYPE    174    183    101     20
D2046V3, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL4 MUTATED        1      0      0
  TSPYL4 WILD-TYPE     86     80    100
D2046V4, multiclass
[1] "Remove cluster labels:" "TSPYL4 MUTATED"        
clus
  TSPYL4 MUTATED TSPYL4 WILD-TYPE 
               1              266 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6780       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AA-3492       TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AA-3663       TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AD-6890       TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AF-2693       TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AF-6672       TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AU-6004       TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AY-6386       TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-4681       TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-6598       TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-6608       TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CA-5797       TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CK-4948       TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CK-5913       TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CK-6746       TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CL-5917       TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-4746       TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-5344       TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-5861       TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-5868       TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-6164       TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-6168       TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-6172       TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6539       TCGA-D5-6540       TCGA-D5-6541       TCGA-D5-6898 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6920       TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6926       TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6930       TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A28C       TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A28H       TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-EI-6508       TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6809       TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G4-6307       TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G4-6317       TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G4-6588       TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G5-6235       TCGA-G5-6641 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL4 MUTATED        0      0      3
  TSPYL4 WILD-TYPE     89    160    135
D2046V5, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              0              160
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL4 MUTATED        2      1      0
  TSPYL4 WILD-TYPE    180    132     72
D2046V6, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL4 MUTATED        0      0      1      3
  TSPYL4 WILD-TYPE    112     96     91    183
D2046V7, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSPYL4 MUTATED        0      0      1      0      0      1      2
  TSPYL4 WILD-TYPE     60     50     48     40     63    124     97
D2046V8, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL4 MUTATED        0      1      0      2
  TSPYL4 WILD-TYPE    130     77     68    194
D2046V9, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TSPYL4 MUTATED        0      1      0      1      0      0      0      1
  TSPYL4 WILD-TYPE     40     61     28     79     69     48     43     27
                  vv
clus               CLUS_9
  TSPYL4 MUTATED        0
  TSPYL4 WILD-TYPE     74
D2046V10, multiclass
        clus
vv       TSPYL4 MUTATED TSPYL4 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL4 MUTATED        1      0      0      0
  TSPYL4 WILD-TYPE     32     31     27     19
D2046V11, multiclass
[1] "Remove cluster labels:" "TSPYL4 MUTATED"        
clus
  TSPYL4 MUTATED TSPYL4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G5-6641 
"TSPYL4 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL4 MUTATED        1      0      0      0
  TSPYL4 WILD-TYPE     53     10     24     22
D2046V12, multiclass
[1] "Remove cluster labels:" "TSPYL4 MUTATED"        
clus
  TSPYL4 MUTATED TSPYL4 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6676 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" "TSPYL4 WILD-TYPE" 
      TCGA-G5-6641 
"TSPYL4 WILD-TYPE" 

Clustering(2047) Variable = ZNF41 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF41 MUTATED        0      1      0      3
  ZNF41 WILD-TYPE     46     57     64     40
D2047V1, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF41 MUTATED        0      2      2
  ZNF41 WILD-TYPE     51     81     75
D2047V2, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             0              51
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF41 MUTATED        6      5      0      0
  ZNF41 WILD-TYPE    172    178    101     20
D2047V3, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF41 MUTATED        2      2      3
  ZNF41 WILD-TYPE     85     78     97
D2047V4, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF41 MUTATED        0      5      3
  ZNF41 WILD-TYPE     89    155    135
D2047V5, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF41 MUTATED        3      5      0
  ZNF41 WILD-TYPE    179    128     72
D2047V6, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF41 MUTATED        2      3      1      5
  ZNF41 WILD-TYPE    110     93     91    181
D2047V7, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF41 MUTATED        3      1      1      1      1      2      2
  ZNF41 WILD-TYPE     57     49     48     39     62    123     97
D2047V8, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF41 MUTATED        5      1      0      5
  ZNF41 WILD-TYPE    125     77     68    191
D2047V9, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF41 MUTATED        3      1      1      1      3      1      0      0
  ZNF41 WILD-TYPE     37     61     27     79     66     47     43     28
                 vv
clus              CLUS_9
  ZNF41 MUTATED        1
  ZNF41 WILD-TYPE     73
D2047V10, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF41 MUTATED        0      1      0      2
  ZNF41 WILD-TYPE     33     30     27     17
D2047V11, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF41 MUTATED        0      1      1      1
  ZNF41 WILD-TYPE     54      9     23     21
D2047V12, multiclass
        clus
vv       ZNF41 MUTATED ZNF41 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2048) Variable = SLC26A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        2      1      1      4
  SLC26A7 WILD-TYPE     44     57     63     39
D2048V1, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        4      2      2
  SLC26A7 WILD-TYPE     47     81     75
D2048V2, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED       11      3      3      1
  SLC26A7 WILD-TYPE    167    180     98     19
D2048V3, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               3               180
  CLUS_3               3                98
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        6      0      4
  SLC26A7 WILD-TYPE     81     80     96
D2048V4, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               6                81
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        1      6      8
  SLC26A7 WILD-TYPE     88    154    130
D2048V5, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               6               154
  CLUS_3               8               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        8      6      1
  SLC26A7 WILD-TYPE    174    127     71
D2048V6, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               8               174
  CLUS_2               6               127
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        1      5      4      8
  SLC26A7 WILD-TYPE    111     91     88    178
D2048V7, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               8               178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC26A7 MUTATED        0      2      5      0      2      1      8
  SLC26A7 WILD-TYPE     60     48     44     40     61    124     91
D2048V8, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               8                91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        5      3      0      9
  SLC26A7 WILD-TYPE    125     75     68    187
D2048V9, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               5               125
  CLUS_2               3                75
  CLUS_3               0                68
  CLUS_4               9               187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC26A7 MUTATED        2      4      1      0      5      1      0      0
  SLC26A7 WILD-TYPE     38     58     27     80     64     47     43     28
                   vv
clus                CLUS_9
  SLC26A7 MUTATED        4
  SLC26A7 WILD-TYPE     70
D2048V10, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               4                58
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               4                70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        0      1      0      2
  SLC26A7 WILD-TYPE     33     30     27     17
D2048V11, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        1      1      1      0
  SLC26A7 WILD-TYPE     53      9     23     22
D2048V12, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2049) Variable = ARMC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC2 MUTATED        2      1      0      1
  ARMC2 WILD-TYPE     44     57     64     42
D2049V1, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC2 MUTATED        2      1      1
  ARMC2 WILD-TYPE     49     82     76
D2049V2, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC2 MUTATED        6      0      2      0
  ARMC2 WILD-TYPE    172    183     99     20
D2049V3, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC2 MUTATED        2      0      2
  ARMC2 WILD-TYPE     85     80     98
D2049V4, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC2 MUTATED        0      2      3
  ARMC2 WILD-TYPE     89    158    135
D2049V5, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC2 MUTATED        3      2      0
  ARMC2 WILD-TYPE    179    131     72
D2049V6, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC2 MUTATED        0      0      3      5
  ARMC2 WILD-TYPE    112     96     89    181
D2049V7, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARMC2 MUTATED        1      0      3      0      0      1      3
  ARMC2 WILD-TYPE     59     50     46     40     63    124     96
D2049V8, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC2 MUTATED        2      1      0      5
  ARMC2 WILD-TYPE    128     77     68    191
D2049V9, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARMC2 MUTATED        0      2      0      1      3      0      1      0
  ARMC2 WILD-TYPE     40     60     28     79     66     48     42     28
                 vv
clus              CLUS_9
  ARMC2 MUTATED        1
  ARMC2 WILD-TYPE     73
D2049V10, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC2 MUTATED        0      0      0      3
  ARMC2 WILD-TYPE     33     31     27     16
D2049V11, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC2 MUTATED        3      0      0      0
  ARMC2 WILD-TYPE     51     10     24     22
D2049V12, multiclass
        clus
vv       ARMC2 MUTATED ARMC2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2050) Variable = RAGE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAGE MUTATED        0      0      1      2
  RAGE WILD-TYPE     46     58     63     41
D2050V1, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAGE MUTATED        1      2      0
  RAGE WILD-TYPE     50     81     77
D2050V2, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAGE MUTATED        4      2      2      1
  RAGE WILD-TYPE    174    181     99     19
D2050V3, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            4            174
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAGE MUTATED        3      1      2
  RAGE WILD-TYPE     84     79     98
D2050V4, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAGE MUTATED        2      1      5
  RAGE WILD-TYPE     87    159    133
D2050V5, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAGE MUTATED        5      2      1
  RAGE WILD-TYPE    177    131     71
D2050V6, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            5            177
  CLUS_2            2            131
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAGE MUTATED        0      4      2      3
  RAGE WILD-TYPE    112     92     90    183
D2050V7, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            0            112
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAGE MUTATED        0      1      2      2      1      1      2
  RAGE WILD-TYPE     60     49     47     38     62    124     97
D2050V8, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            2             38
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAGE MUTATED        5      1      0      3
  RAGE WILD-TYPE    125     77     68    193
D2050V9, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RAGE MUTATED        1      2      1      1      2      0      2      0      0
  RAGE WILD-TYPE     39     60     27     79     67     48     41     28     74
D2050V10, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAGE MUTATED        0      2      0      2
  RAGE WILD-TYPE     33     29     27     17
D2050V11, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAGE MUTATED        4      0      0      0
  RAGE WILD-TYPE     50     10     24     22
D2050V12, multiclass
        clus
vv       RAGE MUTATED RAGE WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2051) Variable = TNNT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT2 MUTATED        1      1      0      1
  TNNT2 WILD-TYPE     45     57     64     42
D2051V1, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNNT2 MUTATED        2      1      0
  TNNT2 WILD-TYPE     49     82     77
D2051V2, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT2 MUTATED        7      1      0      0
  TNNT2 WILD-TYPE    171    182    101     20
D2051V3, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNNT2 MUTATED        3      0      2
  TNNT2 WILD-TYPE     84     80     98
D2051V4, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNNT2 MUTATED        1      1      3
  TNNT2 WILD-TYPE     88    159    135
D2051V5, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNNT2 MUTATED        4      0      1
  TNNT2 WILD-TYPE    178    133     71
D2051V6, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             0             133
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT2 MUTATED        0      3      2      3
  TNNT2 WILD-TYPE    112     93     90    183
D2051V7, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNNT2 MUTATED        0      2      3      0      0      1      2
  TNNT2 WILD-TYPE     60     48     46     40     63    124     97
D2051V8, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT2 MUTATED        4      1      0      2
  TNNT2 WILD-TYPE    126     77     68    194
D2051V9, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNNT2 MUTATED        1      1      1      2      2      0      0      0
  TNNT2 WILD-TYPE     39     61     27     78     67     48     43     28
                 vv
clus              CLUS_9
  TNNT2 MUTATED        0
  TNNT2 WILD-TYPE     74
D2051V10, multiclass
        clus
vv       TNNT2 MUTATED TNNT2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT2 MUTATED        1      0      0      0
  TNNT2 WILD-TYPE     32     31     27     19
D2051V11, multiclass
[1] "Remove cluster labels:" "TNNT2 MUTATED"         
clus
  TNNT2 MUTATED TNNT2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-G5-6641 
"TNNT2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT2 MUTATED        1      0      0      0
  TNNT2 WILD-TYPE     53     10     24     22
D2051V12, multiclass
[1] "Remove cluster labels:" "TNNT2 MUTATED"         
clus
  TNNT2 MUTATED TNNT2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" "TNNT2 WILD-TYPE" 
     TCGA-G5-6641 
"TNNT2 WILD-TYPE" 

Clustering(2052) Variable = CDH8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH8 MUTATED        5      1      0      7
  CDH8 WILD-TYPE     41     57     64     36
D2052V1, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            5             41
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            7             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH8 MUTATED        8      0      5
  CDH8 WILD-TYPE     43     83     72
D2052V2, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            8             43
  CLUS_2            0             83
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH8 MUTATED       24      9      6      1
  CDH8 WILD-TYPE    154    174     95     19
D2052V3, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1           24            154
  CLUS_2            9            174
  CLUS_3            6             95
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH8 MUTATED        9      7     10
  CDH8 WILD-TYPE     78     73     90
D2052V4, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            9             78
  CLUS_2            7             73
  CLUS_3           10             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH8 MUTATED        6     14     12
  CDH8 WILD-TYPE     83    146    126
D2052V5, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            6             83
  CLUS_2           14            146
  CLUS_3           12            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH8 MUTATED       14     11      7
  CDH8 WILD-TYPE    168    122     65
D2052V6, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1           14            168
  CLUS_2           11            122
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH8 MUTATED        7      9     10     12
  CDH8 WILD-TYPE    105     87     82    174
D2052V7, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            7            105
  CLUS_2            9             87
  CLUS_3           10             82
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDH8 MUTATED        4      3      9      7      3      2     10
  CDH8 WILD-TYPE     56     47     40     33     60    123     89
D2052V8, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            4             56
  CLUS_2            3             47
  CLUS_3            9             40
  CLUS_4            7             33
  CLUS_5            3             60
  CLUS_6            2            123
  CLUS_7           10             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH8 MUTATED       14      5      4     14
  CDH8 WILD-TYPE    116     73     64    182
D2052V9, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1           14            116
  CLUS_2            5             73
  CLUS_3            4             64
  CLUS_4           14            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CDH8 MUTATED        2      5      0      7     11      2      5      1      4
  CDH8 WILD-TYPE     38     57     28     73     58     46     38     27     70
D2052V10, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            5             57
  CLUS_3            0             28
  CLUS_4            7             73
  CLUS_5           11             58
  CLUS_6            2             46
  CLUS_7            5             38
  CLUS_8            1             27
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH8 MUTATED        4      1      0      3
  CDH8 WILD-TYPE     29     30     27     16
D2052V11, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH8 MUTATED        4      0      1      3
  CDH8 WILD-TYPE     50     10     23     19
D2052V12, multiclass
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2053) Variable = ADAM17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM17 MUTATED        4      0      1      3
  ADAM17 WILD-TYPE     42     58     63     40
D2053V1, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM17 MUTATED        3      3      2
  ADAM17 WILD-TYPE     48     80     75
D2053V2, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM17 MUTATED       12      1      0      0
  ADAM17 WILD-TYPE    166    182    101     20
D2053V3, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM17 MUTATED        3      0      2
  ADAM17 WILD-TYPE     84     80     98
D2053V4, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM17 MUTATED        2      3      5
  ADAM17 WILD-TYPE     87    157    133
D2053V5, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM17 MUTATED        6      3      1
  ADAM17 WILD-TYPE    176    130     71
D2053V6, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM17 MUTATED        0      3      2      8
  ADAM17 WILD-TYPE    112     93     90    178
D2053V7, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAM17 MUTATED        1      0      3      1      1      2      5
  ADAM17 WILD-TYPE     59     50     46     39     62    123     94
D2053V8, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM17 MUTATED        2      2      1      7
  ADAM17 WILD-TYPE    128     76     67    189
D2053V9, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAM17 MUTATED        0      2      1      1      5      2      0      0
  ADAM17 WILD-TYPE     40     60     27     79     64     46     43     28
                  vv
clus               CLUS_9
  ADAM17 MUTATED        1
  ADAM17 WILD-TYPE     73
D2053V10, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              2               46
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM17 MUTATED        0      0      1      2
  ADAM17 WILD-TYPE     33     31     26     17
D2053V11, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM17 MUTATED        1      0      2      0
  ADAM17 WILD-TYPE     53     10     22     22
D2053V12, multiclass
        clus
vv       ADAM17 MUTATED ADAM17 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2054) Variable = CHMP4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4B MUTATED        1      0      0      0
  CHMP4B WILD-TYPE     45     58     64     43
D2054V1, multiclass
[1] "Remove cluster labels:" "CHMP4B MUTATED"        
clus
  CHMP4B MUTATED CHMP4B WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4B MUTATED        1      0      0
  CHMP4B WILD-TYPE     50     83     77
D2054V2, multiclass
[1] "Remove cluster labels:" "CHMP4B MUTATED"        
clus
  CHMP4B MUTATED CHMP4B WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3812 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4B MUTATED        2      0      0      1
  CHMP4B WILD-TYPE    176    183    101     19
D2054V3, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              2              176
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4B MUTATED        0      0      2
  CHMP4B WILD-TYPE     87     80     98
D2054V4, multiclass
[1] "Remove cluster labels:" "CHMP4B MUTATED"        
clus
  CHMP4B MUTATED CHMP4B WILD-TYPE 
               2              265 
      TCGA-A6-2671       TCGA-A6-2677       TCGA-A6-3809       TCGA-A6-3810 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-4105       TCGA-A6-5656       TCGA-A6-5657       TCGA-A6-5659 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-5660       TCGA-A6-5661       TCGA-A6-5662       TCGA-A6-5664 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-5665       TCGA-A6-5666       TCGA-A6-6137       TCGA-A6-6138 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-6141       TCGA-A6-6142       TCGA-A6-6648       TCGA-A6-6649 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-6651       TCGA-A6-6652       TCGA-A6-6653       TCGA-A6-6654 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3492 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3496       TCGA-AA-3502       TCGA-AA-3510       TCGA-AA-3511 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3655       TCGA-AA-3660       TCGA-AA-3662       TCGA-AA-3663 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AA-3697       TCGA-AA-3712       TCGA-AA-3713       TCGA-AD-5900 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AD-6548       TCGA-AD-6888       TCGA-AD-6889       TCGA-AD-6890 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AD-6895       TCGA-AD-6899       TCGA-AD-6901       TCGA-AD-6963 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687       TCGA-AF-2693 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6136       TCGA-AF-6655       TCGA-AF-6672 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AG-3742       TCGA-AG-A01W 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A026       TCGA-AG-A02N 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AG-A036       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AH-6643       TCGA-AH-6644       TCGA-AU-3779       TCGA-AU-6004 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AY-5543       TCGA-AY-6196       TCGA-AY-6197       TCGA-AY-6386 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AZ-4315       TCGA-AZ-4323       TCGA-AZ-4616       TCGA-AZ-4681 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AZ-4682       TCGA-AZ-5403       TCGA-AZ-5407       TCGA-AZ-6598 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AZ-6599       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6606       TCGA-AZ-6607       TCGA-AZ-6608 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CA-5254       TCGA-CA-5255       TCGA-CA-5796       TCGA-CA-5797 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CA-6715       TCGA-CA-6716       TCGA-CA-6717       TCGA-CA-6718 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CI-6622       TCGA-CI-6624       TCGA-CK-4947       TCGA-CK-4948 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CK-4950       TCGA-CK-4952       TCGA-CK-5912       TCGA-CK-5913 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CK-5914       TCGA-CK-5915       TCGA-CK-5916       TCGA-CK-6746 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CK-6747       TCGA-CK-6748       TCGA-CK-6751       TCGA-CL-5917 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-4743       TCGA-CM-4744       TCGA-CM-4746 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-4747       TCGA-CM-4752       TCGA-CM-5341       TCGA-CM-5344 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-5348       TCGA-CM-5349       TCGA-CM-5860       TCGA-CM-5861 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-5862       TCGA-CM-5863       TCGA-CM-5864       TCGA-CM-5868 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-6161       TCGA-CM-6162       TCGA-CM-6163       TCGA-CM-6164 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-6165       TCGA-CM-6166       TCGA-CM-6167       TCGA-CM-6168 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-6169       TCGA-CM-6170       TCGA-CM-6171       TCGA-CM-6172 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-6674       TCGA-CM-6675       TCGA-CM-6676       TCGA-CM-6677 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-5538       TCGA-D5-5539       TCGA-D5-5540       TCGA-D5-5541 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-6529       TCGA-D5-6532       TCGA-D5-6533       TCGA-D5-6534 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-6535       TCGA-D5-6536       TCGA-D5-6537       TCGA-D5-6538 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-6539       TCGA-D5-6541       TCGA-D5-6898       TCGA-D5-6920 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6923       TCGA-D5-6924       TCGA-D5-6926 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-6927       TCGA-D5-6928       TCGA-D5-6929       TCGA-D5-6930 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-D5-6931       TCGA-D5-6932       TCGA-D5-7000       TCGA-DC-5337 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6155       TCGA-DC-6157       TCGA-DC-6158 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DC-6160       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DM-A0X9       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DM-A1D4       TCGA-DM-A1D6       TCGA-DM-A1D7       TCGA-DM-A1D8 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1DB       TCGA-DM-A1HA 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DM-A1HB       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28C 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DM-A28E       TCGA-DM-A28F       TCGA-DM-A28G       TCGA-DM-A28H 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DM-A28K       TCGA-DT-5265       TCGA-DY-A0XA       TCGA-DY-A1DC 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DF       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-EF-5830       TCGA-EI-6506       TCGA-EI-6507       TCGA-EI-6508 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-EI-6510       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6703       TCGA-F4-6704       TCGA-F4-6805 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-F4-6806       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-F4-6854       TCGA-F4-6855       TCGA-F4-6856       TCGA-F5-6464 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-F5-6812       TCGA-F5-6813       TCGA-G4-6293       TCGA-G4-6299 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-G4-6303       TCGA-G4-6304       TCGA-G4-6306       TCGA-G4-6307 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6310       TCGA-G4-6315       TCGA-G4-6317 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-G4-6321       TCGA-G4-6323       TCGA-G4-6586       TCGA-G4-6588 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6626       TCGA-G4-6628       TCGA-G5-6235 
"CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" "CHMP4B WILD-TYPE" 
      TCGA-G5-6641 
"CHMP4B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4B MUTATED        0      1      2
  CHMP4B WILD-TYPE     89    159    136
D2054V5, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHMP4B MUTATED        1      1      1
  CHMP4B WILD-TYPE    181    132     71
D2054V6, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              1              181
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4B MUTATED        0      1      1      1
  CHMP4B WILD-TYPE    112     95     91    185
D2054V7, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              0              112
  CLUS_2              1               95
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CHMP4B MUTATED        0      1      1      0      0      0      1
  CHMP4B WILD-TYPE     60     49     48     40     63    125     98
D2054V8, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4B MUTATED        1      0      0      2
  CHMP4B WILD-TYPE    129     78     68    194
D2054V9, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              1              129
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CHMP4B MUTATED        0      0      0      1      2      0      0      0
  CHMP4B WILD-TYPE     40     62     28     79     67     48     43     28
                  vv
clus               CLUS_9
  CHMP4B MUTATED        0
  CHMP4B WILD-TYPE     74
D2054V10, multiclass
        clus
vv       CHMP4B MUTATED CHMP4B WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4B MUTATED        0      0      0      0
  CHMP4B WILD-TYPE     33     31     27     19
D2054V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP4B MUTATED        0      0      0      0
  CHMP4B WILD-TYPE     54     10     24     22
D2054V12, multiclass

Clustering(2055) Variable = TMPRSS5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS5 MUTATED        2      0      0      0
  TMPRSS5 WILD-TYPE     44     58     64     43
D2055V1, multiclass
[1] "Remove cluster labels:" "TMPRSS5 MUTATED"       
clus
  TMPRSS5 MUTATED TMPRSS5 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3811        TCGA-AA-3812 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979        TCGA-AA-3980 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AY-4071 
"TMPRSS5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMPRSS5 MUTATED        2      0      0
  TMPRSS5 WILD-TYPE     49     83     77
D2055V2, multiclass
[1] "Remove cluster labels:" "TMPRSS5 MUTATED"       
clus
  TMPRSS5 MUTATED TMPRSS5 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3811        TCGA-AA-3812 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3979        TCGA-AA-3980 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" "TMPRSS5 WILD-TYPE" 
       TCGA-AY-4071 
"TMPRSS5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS5 MUTATED        6      1      0      0
  TMPRSS5 WILD-TYPE    172    182    101     20
D2055V3, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMPRSS5 MUTATED        3      0      2
  TMPRSS5 WILD-TYPE     84     80     98
D2055V4, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMPRSS5 MUTATED        2      1      3
  TMPRSS5 WILD-TYPE     87    159    135
D2055V5, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               1               159
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMPRSS5 MUTATED        3      1      2
  TMPRSS5 WILD-TYPE    179    132     70
D2055V6, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS5 MUTATED        0      2      3      2
  TMPRSS5 WILD-TYPE    112     94     89    184
D2055V7, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMPRSS5 MUTATED        0      3      2      0      0      0      2
  TMPRSS5 WILD-TYPE     60     47     47     40     63    125     97
D2055V8, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               3                47
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS5 MUTATED        4      1      0      2
  TMPRSS5 WILD-TYPE    126     77     68    194
D2055V9, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMPRSS5 MUTATED        2      2      0      0      3      0      0      0
  TMPRSS5 WILD-TYPE     38     60     28     80     66     48     43     28
                   vv
clus                CLUS_9
  TMPRSS5 MUTATED        0
  TMPRSS5 WILD-TYPE     74
D2055V10, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS5 MUTATED        2      0      0      1
  TMPRSS5 WILD-TYPE     31     31     27     18
D2055V11, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMPRSS5 MUTATED        2      0      1      0
  TMPRSS5 WILD-TYPE     52     10     23     22
D2055V12, multiclass
        clus
vv       TMPRSS5 MUTATED TMPRSS5 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2056) Variable = TTR MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTR MUTATED        2      1      0      0
  TTR WILD-TYPE     44     57     64     43
D2056V1, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           2            44
  CLUS_2           1            57
  CLUS_3           0            64
  CLUS_4           0            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTR MUTATED        2      1      0
  TTR WILD-TYPE     49     82     77
D2056V2, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           2            49
  CLUS_2           1            82
  CLUS_3           0            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTR MUTATED        3      0      1      0
  TTR WILD-TYPE    175    183    100     20
D2056V3, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           3           175
  CLUS_2           0           183
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTR MUTATED        1      0      0
  TTR WILD-TYPE     86     80    100
D2056V4, multiclass
[1] "Remove cluster labels:" "TTR MUTATED"           
clus
  TTR MUTATED TTR WILD-TYPE 
            1           266 
   TCGA-A6-2671    TCGA-A6-2677    TCGA-A6-3809    TCGA-A6-3810    TCGA-A6-4105 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-5656    TCGA-A6-5657    TCGA-A6-5659    TCGA-A6-5660    TCGA-A6-5661 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-5662    TCGA-A6-5664    TCGA-A6-5665    TCGA-A6-5666    TCGA-A6-6137 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142    TCGA-A6-6648    TCGA-A6-6649 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6652    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6780 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6781    TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3492    TCGA-AA-3496 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3502    TCGA-AA-3510    TCGA-AA-3511    TCGA-AA-3655    TCGA-AA-3660 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3662    TCGA-AA-3663    TCGA-AA-3697    TCGA-AA-3712    TCGA-AA-3713 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6888    TCGA-AD-6889    TCGA-AD-6890 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AD-6895    TCGA-AD-6899    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AD-6965    TCGA-AF-2687    TCGA-AF-2693    TCGA-AF-4110    TCGA-AF-6136 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732    TCGA-AG-3742 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A026    TCGA-AG-A02N 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A036    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AH-6644    TCGA-AU-3779    TCGA-AU-6004    TCGA-AY-5543    TCGA-AY-6196 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AY-6197    TCGA-AY-6386    TCGA-AZ-4315    TCGA-AZ-4323    TCGA-AZ-4616 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-4681    TCGA-AZ-4682    TCGA-AZ-5403    TCGA-AZ-5407    TCGA-AZ-6598 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-6599    TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-6606    TCGA-AZ-6607    TCGA-AZ-6608    TCGA-CA-5254    TCGA-CA-5255 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CA-5796    TCGA-CA-5797    TCGA-CA-6715    TCGA-CA-6716    TCGA-CA-6718 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6622 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-4947    TCGA-CK-4948    TCGA-CK-4950    TCGA-CK-4952 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CK-5912    TCGA-CK-5913    TCGA-CK-5914    TCGA-CK-5915    TCGA-CK-5916 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CK-6746    TCGA-CK-6747    TCGA-CK-6748    TCGA-CK-6751    TCGA-CL-5917 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CL-5918    TCGA-CM-4743    TCGA-CM-4744    TCGA-CM-4746    TCGA-CM-4747 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-4752    TCGA-CM-5341    TCGA-CM-5344    TCGA-CM-5348    TCGA-CM-5349 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-5860    TCGA-CM-5861    TCGA-CM-5862    TCGA-CM-5863    TCGA-CM-5864 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-5868    TCGA-CM-6161    TCGA-CM-6162    TCGA-CM-6163    TCGA-CM-6164 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6165    TCGA-CM-6166    TCGA-CM-6167    TCGA-CM-6168    TCGA-CM-6169 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6170    TCGA-CM-6171    TCGA-CM-6172    TCGA-CM-6674    TCGA-CM-6675 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-5537    TCGA-D5-5538    TCGA-D5-5539    TCGA-D5-5540    TCGA-D5-5541 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6529    TCGA-D5-6532    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6535 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6536    TCGA-D5-6537    TCGA-D5-6538    TCGA-D5-6539    TCGA-D5-6540 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6541    TCGA-D5-6898    TCGA-D5-6920    TCGA-D5-6922    TCGA-D5-6923 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6924    TCGA-D5-6926    TCGA-D5-6927    TCGA-D5-6928    TCGA-D5-6929 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6930    TCGA-D5-6931    TCGA-D5-6932    TCGA-D5-7000    TCGA-DC-5337 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DC-5869    TCGA-DC-6155    TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6160 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0X9    TCGA-DM-A0XD 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D4    TCGA-DM-A1D6    TCGA-DM-A1D7 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A1D8    TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1DB    TCGA-DM-A1HA 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A1HB    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28C    TCGA-DM-A28E 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A28F    TCGA-DM-A28G    TCGA-DM-A28H    TCGA-DM-A28K    TCGA-DT-5265 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DY-A0XA    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DF    TCGA-DY-A1DG 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DY-A1H8    TCGA-EF-5830    TCGA-EI-6506    TCGA-EI-6507    TCGA-EI-6508 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-EI-6510    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F4-6703    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6806    TCGA-F4-6807 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F4-6808    TCGA-F4-6809    TCGA-F4-6854    TCGA-F4-6855    TCGA-F4-6856 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F5-6812    TCGA-F5-6813    TCGA-G4-6293    TCGA-G4-6299    TCGA-G4-6303 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6304    TCGA-G4-6306    TCGA-G4-6307    TCGA-G4-6309    TCGA-G4-6310 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6315    TCGA-G4-6317    TCGA-G4-6321    TCGA-G4-6323    TCGA-G4-6586 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6588    TCGA-G4-6625    TCGA-G4-6626    TCGA-G4-6628    TCGA-G5-6235 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G5-6641 
"TTR WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTR MUTATED        0      0      1
  TTR WILD-TYPE     89    160    137
D2056V5, multiclass
[1] "Remove cluster labels:" "TTR MUTATED"           
clus
  TTR MUTATED TTR WILD-TYPE 
            1           386 
   TCGA-A6-2671    TCGA-A6-2672    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-5656    TCGA-A6-5657    TCGA-A6-5659    TCGA-A6-5660    TCGA-A6-5661 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-5662    TCGA-A6-5664    TCGA-A6-5665    TCGA-A6-5666    TCGA-A6-6137 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142    TCGA-A6-6648    TCGA-A6-6649 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6652    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6780 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6781    TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3492    TCGA-AA-3496 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3502    TCGA-AA-3510    TCGA-AA-3511    TCGA-AA-3514    TCGA-AA-3517 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3519    TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3525 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531    TCGA-AA-3532    TCGA-AA-3534 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3548    TCGA-AA-3552    TCGA-AA-3553    TCGA-AA-3554    TCGA-AA-3555 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3558    TCGA-AA-3560    TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3655 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3664    TCGA-AA-3672    TCGA-AA-3678    TCGA-AA-3681    TCGA-AA-3688 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3695    TCGA-AA-3696    TCGA-AA-3697    TCGA-AA-3710    TCGA-AA-3712 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3713    TCGA-AA-3715    TCGA-AA-3811    TCGA-AA-3812    TCGA-AA-3814 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3831    TCGA-AA-3833 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3837    TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3848    TCGA-AA-3850 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3856    TCGA-AA-3861    TCGA-AA-3864 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3866    TCGA-AA-3869    TCGA-AA-3872    TCGA-AA-3930    TCGA-AA-3947 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3955    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3973    TCGA-AA-3975    TCGA-AA-3982    TCGA-AA-3986    TCGA-AA-3989 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00Q    TCGA-AA-A00R 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A022    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02K    TCGA-AA-A02O    TCGA-AA-A02W 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A02Y    TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AD-5900    TCGA-AD-6548 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6899    TCGA-AD-6965    TCGA-AF-2689    TCGA-AF-3400 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AF-3913    TCGA-AF-5654    TCGA-AF-6136    TCGA-AF-6655    TCGA-AF-6672 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3574    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3609    TCGA-AG-3612    TCGA-AG-3727 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3731    TCGA-AG-3742    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3893    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A026    TCGA-AG-A02G 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A036    TCGA-AH-6544    TCGA-AH-6547 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AH-6549    TCGA-AH-6643    TCGA-AH-6644    TCGA-AU-6004    TCGA-AY-5543 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AY-6196    TCGA-AY-6197    TCGA-AY-6386    TCGA-AZ-4315    TCGA-AZ-4323 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-4616    TCGA-AZ-4682    TCGA-AZ-5407    TCGA-AZ-6598    TCGA-AZ-6599 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6606 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-6607    TCGA-AZ-6608    TCGA-CA-5254    TCGA-CA-5255    TCGA-CA-5796 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CA-5797    TCGA-CA-6715    TCGA-CA-6716    TCGA-CA-6718    TCGA-CA-6719 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CI-6621    TCGA-CK-5914    TCGA-CK-5916    TCGA-CK-6746    TCGA-CK-6747 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CK-6748    TCGA-CK-6751    TCGA-CL-5918    TCGA-CM-4743    TCGA-CM-4744 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-4746    TCGA-CM-4747    TCGA-CM-4752    TCGA-CM-5341    TCGA-CM-5344 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-5348    TCGA-CM-5349    TCGA-CM-5860    TCGA-CM-5861    TCGA-CM-5862 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-5863    TCGA-CM-5864    TCGA-CM-5868    TCGA-CM-6161    TCGA-CM-6162 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6163    TCGA-CM-6164    TCGA-CM-6165    TCGA-CM-6166    TCGA-CM-6167 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6168    TCGA-CM-6169    TCGA-CM-6170    TCGA-CM-6171    TCGA-CM-6172 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6675    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5538    TCGA-D5-5539    TCGA-D5-5540 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-5541    TCGA-D5-6529    TCGA-D5-6532    TCGA-D5-6533    TCGA-D5-6534 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6535    TCGA-D5-6536    TCGA-D5-6537    TCGA-D5-6538    TCGA-D5-6539 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6540    TCGA-D5-6541    TCGA-D5-6898    TCGA-D5-6920    TCGA-D5-6922 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6923    TCGA-D5-6924    TCGA-D5-6926    TCGA-D5-6927    TCGA-D5-6928 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6930    TCGA-D5-6931    TCGA-D5-6932    TCGA-DC-5337    TCGA-DC-5869 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DC-6155    TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6160    TCGA-DC-6681 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0X9    TCGA-DM-A0XF    TCGA-DM-A1D0 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A1D4    TCGA-DM-A1D6    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1DB    TCGA-DM-A1HA    TCGA-DM-A1HB    TCGA-DM-A282 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A28C    TCGA-DM-A28E    TCGA-DM-A28F    TCGA-DM-A28G    TCGA-DT-5265 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DY-A0XA    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DF    TCGA-DY-A1DG 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DY-A1H8    TCGA-EF-5830    TCGA-EI-6506    TCGA-EI-6507    TCGA-EI-6508 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-EI-6510    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F4-6703    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6806    TCGA-F4-6807 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F4-6808    TCGA-F4-6809    TCGA-F4-6854    TCGA-F4-6855    TCGA-F4-6856 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F5-6812    TCGA-F5-6813    TCGA-G4-6293    TCGA-G4-6299    TCGA-G4-6303 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6304    TCGA-G4-6306    TCGA-G4-6307    TCGA-G4-6309    TCGA-G4-6310 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6315    TCGA-G4-6317    TCGA-G4-6321    TCGA-G4-6323    TCGA-G4-6586 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6588    TCGA-G4-6625    TCGA-G4-6626    TCGA-G4-6628    TCGA-G5-6235 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G5-6641 
"TTR WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTR MUTATED        1      0      0
  TTR WILD-TYPE    181    133     72
D2056V6, multiclass
[1] "Remove cluster labels:" "TTR MUTATED"           
clus
  TTR MUTATED TTR WILD-TYPE 
            1           386 
   TCGA-A6-2671    TCGA-A6-2672    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-5656    TCGA-A6-5657    TCGA-A6-5659    TCGA-A6-5660    TCGA-A6-5661 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-5662    TCGA-A6-5664    TCGA-A6-5665    TCGA-A6-5666    TCGA-A6-6137 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142    TCGA-A6-6648    TCGA-A6-6649 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6652    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6780 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-A6-6781    TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3492    TCGA-AA-3496 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3502    TCGA-AA-3510    TCGA-AA-3511    TCGA-AA-3514    TCGA-AA-3517 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3519    TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3525 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531    TCGA-AA-3532    TCGA-AA-3534 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3548    TCGA-AA-3552    TCGA-AA-3553    TCGA-AA-3554    TCGA-AA-3555 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3558    TCGA-AA-3560    TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3655 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3664    TCGA-AA-3672    TCGA-AA-3678    TCGA-AA-3681    TCGA-AA-3688 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3695    TCGA-AA-3696    TCGA-AA-3697    TCGA-AA-3710    TCGA-AA-3712 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3713    TCGA-AA-3715    TCGA-AA-3811    TCGA-AA-3812    TCGA-AA-3814 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3831    TCGA-AA-3833 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3837    TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3848    TCGA-AA-3850 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3856    TCGA-AA-3861    TCGA-AA-3864 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3866    TCGA-AA-3869    TCGA-AA-3872    TCGA-AA-3930    TCGA-AA-3947 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3955    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-3973    TCGA-AA-3975    TCGA-AA-3982    TCGA-AA-3986    TCGA-AA-3989 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00Q    TCGA-AA-A00R 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A022    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02K    TCGA-AA-A02O    TCGA-AA-A02W 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AA-A02Y    TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AD-5900    TCGA-AD-6548 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6899    TCGA-AD-6965    TCGA-AF-2689    TCGA-AF-3400 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AF-3913    TCGA-AF-5654    TCGA-AF-6136    TCGA-AF-6655    TCGA-AF-6672 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3574    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3609    TCGA-AG-3612    TCGA-AG-3727 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3731    TCGA-AG-3742    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3893    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A026    TCGA-AG-A02G 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A036    TCGA-AH-6544    TCGA-AH-6547 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AH-6549    TCGA-AH-6643    TCGA-AH-6644    TCGA-AU-6004    TCGA-AY-5543 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AY-6196    TCGA-AY-6197    TCGA-AY-6386    TCGA-AZ-4315    TCGA-AZ-4323 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-4616    TCGA-AZ-4682    TCGA-AZ-5407    TCGA-AZ-6598    TCGA-AZ-6599 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6606 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-AZ-6607    TCGA-AZ-6608    TCGA-CA-5254    TCGA-CA-5255    TCGA-CA-5796 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CA-5797    TCGA-CA-6715    TCGA-CA-6716    TCGA-CA-6718    TCGA-CA-6719 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CI-6621    TCGA-CK-5914    TCGA-CK-5916    TCGA-CK-6746    TCGA-CK-6747 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CK-6748    TCGA-CK-6751    TCGA-CL-5918    TCGA-CM-4743    TCGA-CM-4744 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-4746    TCGA-CM-4747    TCGA-CM-4752    TCGA-CM-5341    TCGA-CM-5344 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-5348    TCGA-CM-5349    TCGA-CM-5860    TCGA-CM-5861    TCGA-CM-5862 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-5863    TCGA-CM-5864    TCGA-CM-5868    TCGA-CM-6161    TCGA-CM-6162 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6163    TCGA-CM-6164    TCGA-CM-6165    TCGA-CM-6166    TCGA-CM-6167 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6168    TCGA-CM-6169    TCGA-CM-6170    TCGA-CM-6171    TCGA-CM-6172 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6675    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5538    TCGA-D5-5539    TCGA-D5-5540 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-5541    TCGA-D5-6529    TCGA-D5-6532    TCGA-D5-6533    TCGA-D5-6534 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6535    TCGA-D5-6536    TCGA-D5-6537    TCGA-D5-6538    TCGA-D5-6539 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6540    TCGA-D5-6541    TCGA-D5-6898    TCGA-D5-6920    TCGA-D5-6922 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6923    TCGA-D5-6924    TCGA-D5-6926    TCGA-D5-6927    TCGA-D5-6928 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-D5-6930    TCGA-D5-6931    TCGA-D5-6932    TCGA-DC-5337    TCGA-DC-5869 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DC-6155    TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6160    TCGA-DC-6681 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0X9    TCGA-DM-A0XF    TCGA-DM-A1D0 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A1D4    TCGA-DM-A1D6    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1DB    TCGA-DM-A1HA    TCGA-DM-A1HB    TCGA-DM-A282 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DM-A28C    TCGA-DM-A28E    TCGA-DM-A28F    TCGA-DM-A28G    TCGA-DT-5265 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DY-A0XA    TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DF    TCGA-DY-A1DG 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-DY-A1H8    TCGA-EF-5830    TCGA-EI-6506    TCGA-EI-6507    TCGA-EI-6508 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-EI-6510    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F4-6703    TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6806    TCGA-F4-6807 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F4-6808    TCGA-F4-6809    TCGA-F4-6854    TCGA-F4-6855    TCGA-F4-6856 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-F5-6812    TCGA-F5-6813    TCGA-G4-6293    TCGA-G4-6299    TCGA-G4-6303 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6304    TCGA-G4-6306    TCGA-G4-6307    TCGA-G4-6309    TCGA-G4-6310 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6315    TCGA-G4-6317    TCGA-G4-6321    TCGA-G4-6323    TCGA-G4-6586 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G4-6588    TCGA-G4-6625    TCGA-G4-6626    TCGA-G4-6628    TCGA-G5-6235 
"TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" "TTR WILD-TYPE" 
   TCGA-G5-6641 
"TTR WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTR MUTATED        0      0      1      3
  TTR WILD-TYPE    112     96     91    183
D2056V7, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           0           112
  CLUS_2           0            96
  CLUS_3           1            91
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTR MUTATED        0      0      0      0      1      1      2
  TTR WILD-TYPE     60     50     49     40     62    124     97
D2056V8, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           0            60
  CLUS_2           0            50
  CLUS_3           0            49
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTR MUTATED        0      1      1      2
  TTR WILD-TYPE    130     77     67    194
D2056V9, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           0           130
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TTR MUTATED        0      1      0      0      2      0      0      0      1
  TTR WILD-TYPE     40     61     28     80     67     48     43     28     73
D2056V10, multiclass
        clus
vv       TTR MUTATED TTR WILD-TYPE
  CLUS_1           0            40
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTR MUTATED        0      0      0      0
  TTR WILD-TYPE     33     31     27     19
D2056V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTR MUTATED        0      0      0      0
  TTR WILD-TYPE     54     10     24     22
D2056V12, multiclass

Clustering(2057) Variable = TBC1D25 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D25 MUTATED        5      1      0      1
  TBC1D25 WILD-TYPE     41     57     64     42
D2057V1, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D25 MUTATED        6      0      1
  TBC1D25 WILD-TYPE     45     83     76
D2057V2, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D25 MUTATED        9      1      0      1
  TBC1D25 WILD-TYPE    169    182    101     19
D2057V3, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               9               169
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D25 MUTATED        2      0      2
  TBC1D25 WILD-TYPE     85     80     98
D2057V4, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D25 MUTATED        1      1      5
  TBC1D25 WILD-TYPE     88    159    133
D2057V5, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D25 MUTATED        5      0      2
  TBC1D25 WILD-TYPE    177    133     70
D2057V6, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               0               133
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D25 MUTATED        1      1      2      7
  TBC1D25 WILD-TYPE    111     95     90    179
D2057V7, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               1                95
  CLUS_3               2                90
  CLUS_4               7               179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TBC1D25 MUTATED        1      0      3      0      0      1      6
  TBC1D25 WILD-TYPE     59     50     46     40     63    124     93
D2057V8, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D25 MUTATED        3      1      0      7
  TBC1D25 WILD-TYPE    127     77     68    189
D2057V9, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TBC1D25 MUTATED        1      2      0      0      5      1      1      1
  TBC1D25 WILD-TYPE     39     60     28     80     64     47     42     27
                   vv
clus                CLUS_9
  TBC1D25 MUTATED        0
  TBC1D25 WILD-TYPE     74
D2057V10, multiclass
        clus
vv       TBC1D25 MUTATED TBC1D25 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               5                64
  CLUS_6               1                47
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D25 MUTATED        0      0      0      1
  TBC1D25 WILD-TYPE     33     31     27     18
D2057V11, multiclass
[1] "Remove cluster labels:" "TBC1D25 MUTATED"       
clus
  TBC1D25 MUTATED TBC1D25 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-G5-6641 
"TBC1D25 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D25 MUTATED        1      0      0      0
  TBC1D25 WILD-TYPE     53     10     24     22
D2057V12, multiclass
[1] "Remove cluster labels:" "TBC1D25 MUTATED"       
clus
  TBC1D25 MUTATED TBC1D25 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" "TBC1D25 WILD-TYPE" 
       TCGA-G5-6641 
"TBC1D25 WILD-TYPE" 

Clustering(2058) Variable = ZNF418 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF418 MUTATED        4      0      0      0
  ZNF418 WILD-TYPE     42     58     64     43
D2058V1, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF418 MUTATED        3      1      0
  ZNF418 WILD-TYPE     48     82     77
D2058V2, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF418 MUTATED       11      2      1      0
  ZNF418 WILD-TYPE    167    181    100     20
D2058V3, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1             11              167
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF418 MUTATED        3      1      6
  ZNF418 WILD-TYPE     84     79     94
D2058V4, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF418 MUTATED        1      6      4
  ZNF418 WILD-TYPE     88    154    134
D2058V5, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              6              154
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF418 MUTATED        3      7      1
  ZNF418 WILD-TYPE    179    126     71
D2058V6, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              7              126
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF418 MUTATED        1      7      1      5
  ZNF418 WILD-TYPE    111     89     91    181
D2058V7, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              7               89
  CLUS_3              1               91
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF418 MUTATED        0      3      3      1      2      1      4
  ZNF418 WILD-TYPE     60     47     46     39     61    124     95
D2058V8, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              3               47
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF418 MUTATED        4      2      0      8
  ZNF418 WILD-TYPE    126     76     68    188
D2058V9, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              8              188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF418 MUTATED        2      2      0      1      6      0      1      0
  ZNF418 WILD-TYPE     38     60     28     79     63     48     42     28
                  vv
clus               CLUS_9
  ZNF418 MUTATED        2
  ZNF418 WILD-TYPE     72
D2058V10, multiclass
        clus
vv       ZNF418 MUTATED ZNF418 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF418 MUTATED        0      0      0      2
  ZNF418 WILD-TYPE     33     31     27     17
D2058V11, multiclass
[1] "Remove cluster labels:" "ZNF418 MUTATED"        
clus
  ZNF418 MUTATED ZNF418 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF418 MUTATED        0      0      2      0
  ZNF418 WILD-TYPE     54     10     22     22
D2058V12, multiclass
[1] "Remove cluster labels:" "ZNF418 MUTATED"        
clus
  ZNF418 MUTATED ZNF418 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6600       TCGA-AZ-6601       TCGA-AZ-6603 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718       TCGA-CA-6719 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" "ZNF418 WILD-TYPE" 

Clustering(2059) Variable = FOXA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA2 MUTATED        0      0      1      0
  FOXA2 WILD-TYPE     46     58     63     43
D2059V1, multiclass
[1] "Remove cluster labels:" "FOXA2 MUTATED"         
clus
  FOXA2 MUTATED FOXA2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3845      TCGA-AA-3846 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA2 MUTATED        0      0      1
  FOXA2 WILD-TYPE     51     83     76
D2059V2, multiclass
[1] "Remove cluster labels:" "FOXA2 MUTATED"         
clus
  FOXA2 MUTATED FOXA2 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3845      TCGA-AA-3846 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA2 MUTATED        3      3      1      0
  FOXA2 WILD-TYPE    175    180    100     20
D2059V3, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA2 MUTATED        0      3      3
  FOXA2 WILD-TYPE     87     77     97
D2059V4, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             3              77
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA2 MUTATED        0      4      1
  FOXA2 WILD-TYPE     89    156    137
D2059V5, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA2 MUTATED        2      3      0
  FOXA2 WILD-TYPE    180    130     72
D2059V6, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA2 MUTATED        3      2      1      1
  FOXA2 WILD-TYPE    109     94     91    185
D2059V7, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              94
  CLUS_3             1              91
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FOXA2 MUTATED        2      2      2      0      0      1      0
  FOXA2 WILD-TYPE     58     48     47     40     63    124     99
D2059V8, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA2 MUTATED        3      1      1      2
  FOXA2 WILD-TYPE    127     77     67    194
D2059V9, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FOXA2 MUTATED        0      1      1      0      2      2      0      0
  FOXA2 WILD-TYPE     40     61     27     80     67     46     43     28
                 vv
clus              CLUS_9
  FOXA2 MUTATED        1
  FOXA2 WILD-TYPE     73
D2059V10, multiclass
        clus
vv       FOXA2 MUTATED FOXA2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA2 MUTATED        2      0      0      0
  FOXA2 WILD-TYPE     31     31     27     19
D2059V11, multiclass
[1] "Remove cluster labels:" "FOXA2 MUTATED"         
clus
  FOXA2 MUTATED FOXA2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA2 MUTATED        0      0      0      2
  FOXA2 WILD-TYPE     54     10     24     20
D2059V12, multiclass
[1] "Remove cluster labels:" "FOXA2 MUTATED"         
clus
  FOXA2 MUTATED FOXA2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" "FOXA2 WILD-TYPE" 

Clustering(2060) Variable = GSTM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTM4 MUTATED        1      0      0      1
  GSTM4 WILD-TYPE     45     58     64     42
D2060V1, multiclass
[1] "Remove cluster labels:" "GSTM4 MUTATED"         
clus
  GSTM4 MUTATED GSTM4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AY-4071 
"GSTM4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTM4 MUTATED        2      0      0
  GSTM4 WILD-TYPE     49     83     77
D2060V2, multiclass
[1] "Remove cluster labels:" "GSTM4 MUTATED"         
clus
  GSTM4 MUTATED GSTM4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846      TCGA-AA-3848 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852      TCGA-AA-3854 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858      TCGA-AA-3860 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3867 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872      TCGA-AA-3875 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" "GSTM4 WILD-TYPE" 
     TCGA-AY-4071 
"GSTM4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTM4 MUTATED        5      0      1      0
  GSTM4 WILD-TYPE    173    183    100     20
D2060V3, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTM4 MUTATED        3      0      1
  GSTM4 WILD-TYPE     84     80     99
D2060V4, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTM4 MUTATED        0      1      4
  GSTM4 WILD-TYPE     89    159    134
D2060V5, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GSTM4 MUTATED        2      2      1
  GSTM4 WILD-TYPE    180    131     71
D2060V6, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTM4 MUTATED        1      2      2      1
  GSTM4 WILD-TYPE    111     94     90    185
D2060V7, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSTM4 MUTATED        0      3      2      0      0      0      1
  GSTM4 WILD-TYPE     60     47     47     40     63    125     98
D2060V8, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTM4 MUTATED        1      1      1      3
  GSTM4 WILD-TYPE    129     77     67    193
D2060V9, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GSTM4 MUTATED        0      1      0      0      2      0      2      0
  GSTM4 WILD-TYPE     40     61     28     80     67     48     41     28
                 vv
clus              CLUS_9
  GSTM4 MUTATED        1
  GSTM4 WILD-TYPE     73
D2060V10, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTM4 MUTATED        1      0      1      1
  GSTM4 WILD-TYPE     32     31     26     18
D2060V11, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSTM4 MUTATED        2      0      1      0
  GSTM4 WILD-TYPE     52     10     23     22
D2060V12, multiclass
        clus
vv       GSTM4 MUTATED GSTM4 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2061) Variable = PCDHGC4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGC4 MUTATED        5      1      0      3
  PCDHGC4 WILD-TYPE     41     57     64     40
D2061V1, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                57
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGC4 MUTATED        6      2      1
  PCDHGC4 WILD-TYPE     45     81     76
D2061V2, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGC4 MUTATED       13      2      0      0
  PCDHGC4 WILD-TYPE    165    181    101     20
D2061V3, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGC4 MUTATED        3      2      2
  PCDHGC4 WILD-TYPE     84     78     98
D2061V4, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               2                78
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGC4 MUTATED        0      5      7
  PCDHGC4 WILD-TYPE     89    155    131
D2061V5, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHGC4 MUTATED        5      5      2
  PCDHGC4 WILD-TYPE    177    128     70
D2061V6, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGC4 MUTATED        2      2      2      9
  PCDHGC4 WILD-TYPE    110     94     90    177
D2061V7, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCDHGC4 MUTATED        2      0      4      0      0      2      7
  PCDHGC4 WILD-TYPE     58     50     45     40     63    123     92
D2061V8, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               2               123
  CLUS_7               7                92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGC4 MUTATED        3      2      1      7
  PCDHGC4 WILD-TYPE    127     76     67    189
D2061V9, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               7               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PCDHGC4 MUTATED        0      2      0      2      5      0      1      1
  PCDHGC4 WILD-TYPE     40     60     28     78     64     48     42     27
                   vv
clus                CLUS_9
  PCDHGC4 MUTATED        2
  PCDHGC4 WILD-TYPE     72
D2061V10, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGC4 MUTATED        0      0      0      3
  PCDHGC4 WILD-TYPE     33     31     27     16
D2061V11, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHGC4 MUTATED        2      0      1      0
  PCDHGC4 WILD-TYPE     52     10     23     22
D2061V12, multiclass
        clus
vv       PCDHGC4 MUTATED PCDHGC4 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2062) Variable = KIAA1967 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        3      1      0      2
  KIAA1967 WILD-TYPE     43     57     64     41
D2062V1, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                2                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED        4      1      1
  KIAA1967 WILD-TYPE     47     82     76
D2062V2, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                1                 82
  CLUS_3                1                 76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        9      2      1      0
  KIAA1967 WILD-TYPE    169    181    100     20
D2062V3, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                2                181
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED        3      1      2
  KIAA1967 WILD-TYPE     84     79     98
D2062V4, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED        2      5      4
  KIAA1967 WILD-TYPE     87    155    134
D2062V5, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                5                155
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED        5      6      0
  KIAA1967 WILD-TYPE    177    127     72
D2062V6, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                6                127
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        2      3      2      5
  KIAA1967 WILD-TYPE    110     93     90    181
D2062V7, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                2                 90
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA1967 MUTATED        2      0      3      1      0      1      5
  KIAA1967 WILD-TYPE     58     50     46     39     63    124     94
D2062V8, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                1                 39
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                5                 94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        2      2      0      7
  KIAA1967 WILD-TYPE    128     76     68    189
D2062V9, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA1967 MUTATED        0      2      0      1      7      0      0      1
  KIAA1967 WILD-TYPE     40     60     28     79     62     48     43     27
                    vv
clus                 CLUS_9
  KIAA1967 MUTATED        0
  KIAA1967 WILD-TYPE     74
D2062V10, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                1                 79
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        1      1      0      2
  KIAA1967 WILD-TYPE     32     30     27     17
D2062V11, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        2      0      2      0
  KIAA1967 WILD-TYPE     52     10     22     22
D2062V12, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                0                 10
  CLUS_3                2                 22
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2063) Variable = CPB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB1 MUTATED        2      2      1      0
  CPB1 WILD-TYPE     44     56     63     43
D2063V1, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            2             56
  CLUS_3            1             63
  CLUS_4            0             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB1 MUTATED        1      2      2
  CPB1 WILD-TYPE     50     81     75
D2063V2, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            2             81
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB1 MUTATED        3      4      2      0
  CPB1 WILD-TYPE    175    179     99     20
D2063V3, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            4            179
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB1 MUTATED        0      2      2
  CPB1 WILD-TYPE     87     78     98
D2063V4, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            0             87
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB1 MUTATED        0      4      2
  CPB1 WILD-TYPE     89    156    136
D2063V5, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            4            156
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB1 MUTATED        2      3      1
  CPB1 WILD-TYPE    180    130     71
D2063V6, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB1 MUTATED        2      0      2      5
  CPB1 WILD-TYPE    110     96     90    181
D2063V7, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPB1 MUTATED        0      1      1      1      1      3      2
  CPB1 WILD-TYPE     60     49     48     39     62    122     97
D2063V8, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            3            122
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB1 MUTATED        2      2      1      3
  CPB1 WILD-TYPE    128     76     67    193
D2063V9, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CPB1 MUTATED        0      2      1      0      1      1      1      0      2
  CPB1 WILD-TYPE     40     60     27     80     68     47     42     28     72
D2063V10, multiclass
        clus
vv       CPB1 MUTATED CPB1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB1 MUTATED        0      0      0      0
  CPB1 WILD-TYPE     33     31     27     19
D2063V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB1 MUTATED        0      0      0      0
  CPB1 WILD-TYPE     54     10     24     22
D2063V12, multiclass

Clustering(2064) Variable = PTPN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN1 MUTATED        2      0      0      3
  PTPN1 WILD-TYPE     44     58     64     40
D2064V1, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN1 MUTATED        2      1      2
  PTPN1 WILD-TYPE     49     82     75
D2064V2, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN1 MUTATED        9      1      0      0
  PTPN1 WILD-TYPE    169    182    101     20
D2064V3, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN1 MUTATED        3      1      1
  PTPN1 WILD-TYPE     84     79     99
D2064V4, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN1 MUTATED        2      3      4
  PTPN1 WILD-TYPE     87    157    134
D2064V5, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN1 MUTATED        5      3      1
  PTPN1 WILD-TYPE    177    130     71
D2064V6, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN1 MUTATED        1      1      3      5
  PTPN1 WILD-TYPE    111     95     89    181
D2064V7, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTPN1 MUTATED        1      0      2      1      2      2      2
  PTPN1 WILD-TYPE     59     50     47     39     61    123     97
D2064V8, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN1 MUTATED        1      4      0      2
  PTPN1 WILD-TYPE    129     74     68    194
D2064V9, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             4              74
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PTPN1 MUTATED        1      4      0      1      1      0      0      0
  PTPN1 WILD-TYPE     39     58     28     79     68     48     43     28
                 vv
clus              CLUS_9
  PTPN1 MUTATED        0
  PTPN1 WILD-TYPE     74
D2064V10, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN1 MUTATED        2      0      0      1
  PTPN1 WILD-TYPE     31     31     27     18
D2064V11, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN1 MUTATED        3      0      0      0
  PTPN1 WILD-TYPE     51     10     24     22
D2064V12, multiclass
        clus
vv       PTPN1 MUTATED PTPN1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2065) Variable = ZNF266 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF266 MUTATED        2      2      0      1
  ZNF266 WILD-TYPE     44     56     64     42
D2065V1, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF266 MUTATED        1      3      1
  ZNF266 WILD-TYPE     50     80     76
D2065V2, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              3               80
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF266 MUTATED        6      3      0      0
  ZNF266 WILD-TYPE    172    180    101     20
D2065V3, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              6              172
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF266 MUTATED        2      1      2
  ZNF266 WILD-TYPE     85     79     98
D2065V4, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF266 MUTATED        1      4      1
  ZNF266 WILD-TYPE     88    156    137
D2065V5, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF266 MUTATED        0      5      1
  ZNF266 WILD-TYPE    182    128     71
D2065V6, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              0              182
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF266 MUTATED        1      2      1      5
  ZNF266 WILD-TYPE    111     94     91    181
D2065V7, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              1               91
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF266 MUTATED        1      1      1      0      1      2      3
  ZNF266 WILD-TYPE     59     49     48     40     62    123     96
D2065V8, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF266 MUTATED        0      1      1      7
  ZNF266 WILD-TYPE    130     77     67    189
D2065V9, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF266 MUTATED        0      1      0      1      4      0      0      0
  ZNF266 WILD-TYPE     40     61     28     79     65     48     43     28
                  vv
clus               CLUS_9
  ZNF266 MUTATED        3
  ZNF266 WILD-TYPE     71
D2065V10, multiclass
        clus
vv       ZNF266 MUTATED ZNF266 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              3               71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF266 MUTATED        0      0      0      0
  ZNF266 WILD-TYPE     33     31     27     19
D2065V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF266 MUTATED        0      0      0      0
  ZNF266 WILD-TYPE     54     10     24     22
D2065V12, multiclass

Clustering(2066) Variable = BHLHE41 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE41 MUTATED        0      1      0      0
  BHLHE41 WILD-TYPE     46     57     64     43
D2066V1, multiclass
[1] "Remove cluster labels:" "BHLHE41 MUTATED"       
clus
  BHLHE41 MUTATED BHLHE41 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3727 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BHLHE41 MUTATED        0      0      1
  BHLHE41 WILD-TYPE     51     83     76
D2066V2, multiclass
[1] "Remove cluster labels:" "BHLHE41 MUTATED"       
clus
  BHLHE41 MUTATED BHLHE41 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3727 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE41 MUTATED        2      1      1      1
  BHLHE41 WILD-TYPE    176    182    100     19
D2066V3, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BHLHE41 MUTATED        1      2      1
  BHLHE41 WILD-TYPE     86     78     99
D2066V4, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               2                78
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BHLHE41 MUTATED        0      1      2
  BHLHE41 WILD-TYPE     89    159    136
D2066V5, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BHLHE41 MUTATED        2      0      1
  BHLHE41 WILD-TYPE    180    133     71
D2066V6, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               0               133
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE41 MUTATED        2      1      1      1
  BHLHE41 WILD-TYPE    110     95     91    185
D2066V7, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BHLHE41 MUTATED        1      0      2      1      0      1      0
  BHLHE41 WILD-TYPE     59     50     47     39     63    124     99
D2066V8, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE41 MUTATED        3      1      0      1
  BHLHE41 WILD-TYPE    127     77     68    195
D2066V9, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BHLHE41 MUTATED        1      1      1      0      1      1      0      0
  BHLHE41 WILD-TYPE     39     61     27     80     68     47     43     28
                   vv
clus                CLUS_9
  BHLHE41 MUTATED        0
  BHLHE41 WILD-TYPE     74
D2066V10, multiclass
        clus
vv       BHLHE41 MUTATED BHLHE41 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE41 MUTATED        0      0      0      1
  BHLHE41 WILD-TYPE     33     31     27     18
D2066V11, multiclass
[1] "Remove cluster labels:" "BHLHE41 MUTATED"       
clus
  BHLHE41 MUTATED BHLHE41 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-G5-6641 
"BHLHE41 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE41 MUTATED        1      0      0      0
  BHLHE41 WILD-TYPE     53     10     24     22
D2066V12, multiclass
[1] "Remove cluster labels:" "BHLHE41 MUTATED"       
clus
  BHLHE41 MUTATED BHLHE41 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" "BHLHE41 WILD-TYPE" 
       TCGA-G5-6641 
"BHLHE41 WILD-TYPE" 

Clustering(2067) Variable = ADAMTS16 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS16 MUTATED        3      1      2      5
  ADAMTS16 WILD-TYPE     43     57     62     38
D2067V1, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                1                 57
  CLUS_3                2                 62
  CLUS_4                5                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS16 MUTATED        4      5      2
  ADAMTS16 WILD-TYPE     47     78     75
D2067V2, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                5                 78
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS16 MUTATED       18      5      7      1
  ADAMTS16 WILD-TYPE    160    178     94     19
D2067V3, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1               18                160
  CLUS_2                5                178
  CLUS_3                7                 94
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS16 MUTATED        6      8      9
  ADAMTS16 WILD-TYPE     81     72     91
D2067V4, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                6                 81
  CLUS_2                8                 72
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS16 MUTATED        5      9     13
  ADAMTS16 WILD-TYPE     84    151    125
D2067V5, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                5                 84
  CLUS_2                9                151
  CLUS_3               13                125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS16 MUTATED       15     10      2
  ADAMTS16 WILD-TYPE    167    123     70
D2067V6, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1               15                167
  CLUS_2               10                123
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS16 MUTATED        7      9      7     10
  ADAMTS16 WILD-TYPE    105     87     85    176
D2067V7, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                7                105
  CLUS_2                9                 87
  CLUS_3                7                 85
  CLUS_4               10                176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ADAMTS16 MUTATED        4      3      7      2      4      5      8
  ADAMTS16 WILD-TYPE     56     47     42     38     59    120     91
D2067V8, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                4                 56
  CLUS_2                3                 47
  CLUS_3                7                 42
  CLUS_4                2                 38
  CLUS_5                4                 59
  CLUS_6                5                120
  CLUS_7                8                 91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS16 MUTATED       14      2      3     12
  ADAMTS16 WILD-TYPE    116     76     65    184
D2067V9, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1               14                116
  CLUS_2                2                 76
  CLUS_3                3                 65
  CLUS_4               12                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ADAMTS16 MUTATED        4      4      2      5      7      0      3      0
  ADAMTS16 WILD-TYPE     36     58     26     75     62     48     40     28
                    vv
clus                 CLUS_9
  ADAMTS16 MUTATED        6
  ADAMTS16 WILD-TYPE     68
D2067V10, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                4                 58
  CLUS_3                2                 26
  CLUS_4                5                 75
  CLUS_5                7                 62
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                6                 68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS16 MUTATED        0      3      0      3
  ADAMTS16 WILD-TYPE     33     28     27     16
D2067V11, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                3                 28
  CLUS_3                0                 27
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS16 MUTATED        4      2      0      0
  ADAMTS16 WILD-TYPE     50      8     24     22
D2067V12, multiclass
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                2                  8
  CLUS_3                0                 24
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2068) Variable = MCM9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM9 MUTATED        0      0      0      4
  MCM9 WILD-TYPE     46     58     64     39
D2068V1, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM9 MUTATED        1      1      2
  MCM9 WILD-TYPE     50     82     75
D2068V2, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM9 MUTATED        5      1      3      0
  MCM9 WILD-TYPE    173    182     98     20
D2068V3, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            3             98
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM9 MUTATED        3      0      2
  MCM9 WILD-TYPE     84     80     98
D2068V4, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM9 MUTATED        2      2      2
  MCM9 WILD-TYPE     87    158    136
D2068V5, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM9 MUTATED        2      2      2
  MCM9 WILD-TYPE    180    131     70
D2068V6, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            2            131
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM9 MUTATED        1      1      2      5
  MCM9 WILD-TYPE    111     95     90    181
D2068V7, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            1             95
  CLUS_3            2             90
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MCM9 MUTATED        0      2      0      1      1      1      4
  MCM9 WILD-TYPE     60     48     49     39     62    124     95
D2068V8, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            2             48
  CLUS_3            0             49
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM9 MUTATED        2      2      0      5
  MCM9 WILD-TYPE    128     76     68    191
D2068V9, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MCM9 MUTATED        1      2      2      1      1      0      0      0      2
  MCM9 WILD-TYPE     39     60     26     79     68     48     43     28     72
D2068V10, multiclass
        clus
vv       MCM9 MUTATED MCM9 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM9 MUTATED        0      1      0      0
  MCM9 WILD-TYPE     33     30     27     19
D2068V11, multiclass
[1] "Remove cluster labels:" "MCM9 MUTATED"          
clus
  MCM9 MUTATED MCM9 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-G5-6641 
"MCM9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM9 MUTATED        1      0      0      0
  MCM9 WILD-TYPE     53     10     24     22
D2068V12, multiclass
[1] "Remove cluster labels:" "MCM9 MUTATED"          
clus
  MCM9 MUTATED MCM9 WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" "MCM9 WILD-TYPE" 
    TCGA-G5-6641 
"MCM9 WILD-TYPE" 

Clustering(2069) Variable = NSF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSF MUTATED        0      0      0      0
  NSF WILD-TYPE     46     58     64     43
D2069V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NSF MUTATED        0      0      0
  NSF WILD-TYPE     51     83     77
D2069V2, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSF MUTATED        3      0      1      0
  NSF WILD-TYPE    175    183    100     20
D2069V3, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           3           175
  CLUS_2           0           183
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NSF MUTATED        2      1      0
  NSF WILD-TYPE     85     79    100
D2069V4, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           2            85
  CLUS_2           1            79
  CLUS_3           0           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NSF MUTATED        1      2      1
  NSF WILD-TYPE     88    158    137
D2069V5, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           1            88
  CLUS_2           2           158
  CLUS_3           1           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NSF MUTATED        1      1      2
  NSF WILD-TYPE    181    132     70
D2069V6, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           1           181
  CLUS_2           1           132
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSF MUTATED        1      1      1      1
  NSF WILD-TYPE    111     95     91    185
D2069V7, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           1           111
  CLUS_2           1            95
  CLUS_3           1            91
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NSF MUTATED        0      0      2      0      1      0      1
  NSF WILD-TYPE     60     50     47     40     62    125     98
D2069V8, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           0            60
  CLUS_2           0            50
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           0           125
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSF MUTATED        1      1      1      1
  NSF WILD-TYPE    129     77     67    195
D2069V9, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           1           129
  CLUS_2           1            77
  CLUS_3           1            67
  CLUS_4           1           195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  NSF MUTATED        0      2      0      0      1      0      1      0      0
  NSF WILD-TYPE     40     60     28     80     68     48     42     28     74
D2069V10, multiclass
        clus
vv       NSF MUTATED NSF WILD-TYPE
  CLUS_1           0            40
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSF MUTATED        1      0      0      0
  NSF WILD-TYPE     32     31     27     19
D2069V11, multiclass
[1] "Remove cluster labels:" "NSF MUTATED"           
clus
  NSF MUTATED NSF WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NSF MUTATED        0      0      0      1
  NSF WILD-TYPE     54     10     24     21
D2069V12, multiclass
[1] "Remove cluster labels:" "NSF MUTATED"           
clus
  NSF MUTATED NSF WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CA-6718    TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CI-6624    TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CM-6167    TCGA-CM-6674    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" "NSF WILD-TYPE" 

Clustering(2070) Variable = SAMD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD11 MUTATED        2      0      0      0
  SAMD11 WILD-TYPE     44     58     64     43
D2070V1, multiclass
[1] "Remove cluster labels:" "SAMD11 MUTATED"        
clus
  SAMD11 MUTATED SAMD11 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3517 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AY-4071 
"SAMD11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD11 MUTATED        2      0      0
  SAMD11 WILD-TYPE     49     83     77
D2070V2, multiclass
[1] "Remove cluster labels:" "SAMD11 MUTATED"        
clus
  SAMD11 MUTATED SAMD11 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3517 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950       TCGA-AA-3952 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AY-4071 
"SAMD11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD11 MUTATED        4      1      1      0
  SAMD11 WILD-TYPE    174    182    100     20
D2070V3, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD11 MUTATED        2      1      1
  SAMD11 WILD-TYPE     85     79     99
D2070V4, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD11 MUTATED        1      2      2
  SAMD11 WILD-TYPE     88    158    136
D2070V5, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              2              158
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD11 MUTATED        1      2      2
  SAMD11 WILD-TYPE    181    131     70
D2070V6, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD11 MUTATED        1      1      2      2
  SAMD11 WILD-TYPE    111     95     90    184
D2070V7, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SAMD11 MUTATED        0      0      2      0      2      0      2
  SAMD11 WILD-TYPE     60     50     47     40     61    125     97
D2070V8, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD11 MUTATED        3      1      0      2
  SAMD11 WILD-TYPE    127     77     68    194
D2070V9, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SAMD11 MUTATED        0      1      0      2      3      0      0      0
  SAMD11 WILD-TYPE     40     61     28     78     66     48     43     28
                  vv
clus               CLUS_9
  SAMD11 MUTATED        0
  SAMD11 WILD-TYPE     74
D2070V10, multiclass
        clus
vv       SAMD11 MUTATED SAMD11 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD11 MUTATED        0      0      0      1
  SAMD11 WILD-TYPE     33     31     27     18
D2070V11, multiclass
[1] "Remove cluster labels:" "SAMD11 MUTATED"        
clus
  SAMD11 MUTATED SAMD11 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-G5-6641 
"SAMD11 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD11 MUTATED        0      0      1      0
  SAMD11 WILD-TYPE     54     10     23     22
D2070V12, multiclass
[1] "Remove cluster labels:" "SAMD11 MUTATED"        
clus
  SAMD11 MUTATED SAMD11 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" "SAMD11 WILD-TYPE" 
      TCGA-G5-6641 
"SAMD11 WILD-TYPE" 

Clustering(2071) Variable = MMP19 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP19 MUTATED        2      0      1      3
  MMP19 WILD-TYPE     44     58     63     40
D2071V1, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP19 MUTATED        4      0      2
  MMP19 WILD-TYPE     47     83     75
D2071V2, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP19 MUTATED        8      1      2      0
  MMP19 WILD-TYPE    170    182     99     20
D2071V3, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP19 MUTATED        1      1      3
  MMP19 WILD-TYPE     86     79     97
D2071V4, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP19 MUTATED        2      3      5
  MMP19 WILD-TYPE     87    157    133
D2071V5, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP19 MUTATED        4      6      0
  MMP19 WILD-TYPE    178    127     72
D2071V6, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP19 MUTATED        2      3      1      6
  MMP19 WILD-TYPE    110     93     91    180
D2071V7, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MMP19 MUTATED        1      2      2      1      0      1      5
  MMP19 WILD-TYPE     59     48     47     39     63    124     94
D2071V8, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP19 MUTATED        3      0      0      8
  MMP19 WILD-TYPE    127     78     68    188
D2071V9, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MMP19 MUTATED        0      0      1      0      6      1      1      1
  MMP19 WILD-TYPE     40     62     27     80     63     47     42     27
                 vv
clus              CLUS_9
  MMP19 MUTATED        1
  MMP19 WILD-TYPE     73
D2071V10, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP19 MUTATED        1      0      0      2
  MMP19 WILD-TYPE     32     31     27     17
D2071V11, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP19 MUTATED        1      0      1      1
  MMP19 WILD-TYPE     53     10     23     21
D2071V12, multiclass
        clus
vv       MMP19 MUTATED MMP19 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2072) Variable = ATG10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG10 MUTATED        1      0      0      1
  ATG10 WILD-TYPE     45     58     64     42
D2072V1, multiclass
[1] "Remove cluster labels:" "ATG10 MUTATED"         
clus
  ATG10 MUTATED ATG10 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AY-4071 
"ATG10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG10 MUTATED        1      1      0
  ATG10 WILD-TYPE     50     82     77
D2072V2, multiclass
[1] "Remove cluster labels:" "ATG10 MUTATED"         
clus
  ATG10 MUTATED ATG10 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AY-4071 
"ATG10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG10 MUTATED        5      0      0      0
  ATG10 WILD-TYPE    173    183    101     20
D2072V3, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG10 MUTATED        2      0      1
  ATG10 WILD-TYPE     85     80     99
D2072V4, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG10 MUTATED        0      2      3
  ATG10 WILD-TYPE     89    158    135
D2072V5, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG10 MUTATED        4      1      0
  ATG10 WILD-TYPE    178    132     72
D2072V6, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             1             132
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG10 MUTATED        0      1      2      2
  ATG10 WILD-TYPE    112     95     90    184
D2072V7, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATG10 MUTATED        0      0      3      0      0      0      2
  ATG10 WILD-TYPE     60     50     46     40     63    125     97
D2072V8, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG10 MUTATED        1      0      0      4
  ATG10 WILD-TYPE    129     78     68    192
D2072V9, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATG10 MUTATED        0      2      1      0      2      0      0      0
  ATG10 WILD-TYPE     40     60     27     80     67     48     43     28
                 vv
clus              CLUS_9
  ATG10 MUTATED        0
  ATG10 WILD-TYPE     74
D2072V10, multiclass
        clus
vv       ATG10 MUTATED ATG10 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG10 MUTATED        0      0      0      1
  ATG10 WILD-TYPE     33     31     27     18
D2072V11, multiclass
[1] "Remove cluster labels:" "ATG10 MUTATED"         
clus
  ATG10 MUTATED ATG10 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-G5-6641 
"ATG10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG10 MUTATED        0      0      1      0
  ATG10 WILD-TYPE     54     10     23     22
D2072V12, multiclass
[1] "Remove cluster labels:" "ATG10 MUTATED"         
clus
  ATG10 MUTATED ATG10 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" "ATG10 WILD-TYPE" 
     TCGA-G5-6641 
"ATG10 WILD-TYPE" 

Clustering(2073) Variable = TMSB15B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMSB15B MUTATED        0      0      0      0
  TMSB15B WILD-TYPE     46     58     64     43
D2073V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMSB15B MUTATED        0      0      0
  TMSB15B WILD-TYPE     51     83     77
D2073V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMSB15B MUTATED        1      0      3      0
  TMSB15B WILD-TYPE    177    183     98     20
D2073V3, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               1               177
  CLUS_2               0               183
  CLUS_3               3                98
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMSB15B MUTATED        1      1      2
  TMSB15B WILD-TYPE     86     79     98
D2073V4, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               1                86
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMSB15B MUTATED        1      0      2
  TMSB15B WILD-TYPE     88    160    136
D2073V5, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               1                88
  CLUS_2               0               160
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMSB15B MUTATED        3      0      0
  TMSB15B WILD-TYPE    179    133     72
D2073V6, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               0               133
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMSB15B MUTATED        2      1      1      0
  TMSB15B WILD-TYPE    110     95     91    186
D2073V7, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               2               110
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               0               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMSB15B MUTATED        1      0      1      1      1      0      0
  TMSB15B WILD-TYPE     59     50     48     39     62    125     99
D2073V8, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMSB15B MUTATED        2      1      1      0
  TMSB15B WILD-TYPE    128     77     67    196
D2073V9, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               0               196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TMSB15B MUTATED        0      1      0      1      1      0      1      0
  TMSB15B WILD-TYPE     40     61     28     79     68     48     42     28
                   vv
clus                CLUS_9
  TMSB15B MUTATED        0
  TMSB15B WILD-TYPE     74
D2073V10, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMSB15B MUTATED        1      1      1      0
  TMSB15B WILD-TYPE     32     30     26     19
D2073V11, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               0                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMSB15B MUTATED        1      1      1      0
  TMSB15B WILD-TYPE     53      9     23     22
D2073V12, multiclass
        clus
vv       TMSB15B MUTATED TMSB15B WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2074) Variable = GIMAP8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP8 MUTATED        5      0      0      2
  GIMAP8 WILD-TYPE     41     58     64     41
D2074V1, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP8 MUTATED        5      1      1
  GIMAP8 WILD-TYPE     46     82     76
D2074V2, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP8 MUTATED       18      2      1      0
  GIMAP8 WILD-TYPE    160    181    100     20
D2074V3, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP8 MUTATED        4      0      9
  GIMAP8 WILD-TYPE     83     80     91
D2074V4, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP8 MUTATED        0      7     11
  GIMAP8 WILD-TYPE     89    153    127
D2074V5, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              7              153
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP8 MUTATED        8      9      1
  GIMAP8 WILD-TYPE    174    124     71
D2074V6, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              9              124
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP8 MUTATED        3      5      5      8
  GIMAP8 WILD-TYPE    109     91     87    178
D2074V7, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              8              178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GIMAP8 MUTATED        3      5      4      0      2      1      6
  GIMAP8 WILD-TYPE     57     45     45     40     61    124     93
D2074V8, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              5               45
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP8 MUTATED        6      2      2      9
  GIMAP8 WILD-TYPE    124     76     66    187
D2074V9, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              6              124
  CLUS_2              2               76
  CLUS_3              2               66
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GIMAP8 MUTATED        1      4      0      4      5      1      2      1
  GIMAP8 WILD-TYPE     39     58     28     76     64     47     41     27
                  vv
clus               CLUS_9
  GIMAP8 MUTATED        1
  GIMAP8 WILD-TYPE     73
D2074V10, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              4               76
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP8 MUTATED        1      0      3      1
  GIMAP8 WILD-TYPE     32     31     24     18
D2074V11, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              3               24
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP8 MUTATED        1      0      2      2
  GIMAP8 WILD-TYPE     53     10     22     20
D2074V12, multiclass
        clus
vv       GIMAP8 MUTATED GIMAP8 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2075) Variable = TNXB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNXB MUTATED        4      3      1      5
  TNXB WILD-TYPE     42     55     63     38
D2075V1, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            4             42
  CLUS_2            3             55
  CLUS_3            1             63
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNXB MUTATED        4      4      5
  TNXB WILD-TYPE     47     79     72
D2075V2, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            4             47
  CLUS_2            4             79
  CLUS_3            5             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNXB MUTATED       30      7      5      1
  TNXB WILD-TYPE    148    176     96     19
D2075V3, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1           30            148
  CLUS_2            7            176
  CLUS_3            5             96
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNXB MUTATED       10      7     14
  TNXB WILD-TYPE     77     73     86
D2075V4, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1           10             77
  CLUS_2            7             73
  CLUS_3           14             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNXB MUTATED        7      9     18
  TNXB WILD-TYPE     82    151    120
D2075V5, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            7             82
  CLUS_2            9            151
  CLUS_3           18            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNXB MUTATED       20     10      4
  TNXB WILD-TYPE    162    123     68
D2075V6, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1           20            162
  CLUS_2           10            123
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNXB MUTATED        7     13     11     12
  TNXB WILD-TYPE    105     83     81    174
D2075V7, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            7            105
  CLUS_2           13             83
  CLUS_3           11             81
  CLUS_4           12            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNXB MUTATED        6      6     14      1      4      5      7
  TNXB WILD-TYPE     54     44     35     39     59    120     92
D2075V8, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            6             54
  CLUS_2            6             44
  CLUS_3           14             35
  CLUS_4            1             39
  CLUS_5            4             59
  CLUS_6            5            120
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNXB MUTATED       19      7      1     15
  TNXB WILD-TYPE    111     71     67    181
D2075V9, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1           19            111
  CLUS_2            7             71
  CLUS_3            1             67
  CLUS_4           15            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TNXB MUTATED        4      8      5      5     11      3      1      3      2
  TNXB WILD-TYPE     36     54     23     75     58     45     42     25     72
D2075V10, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            4             36
  CLUS_2            8             54
  CLUS_3            5             23
  CLUS_4            5             75
  CLUS_5           11             58
  CLUS_6            3             45
  CLUS_7            1             42
  CLUS_8            3             25
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNXB MUTATED        3      2      0      4
  TNXB WILD-TYPE     30     29     27     15
D2075V11, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNXB MUTATED        6      0      2      1
  TNXB WILD-TYPE     48     10     22     21
D2075V12, multiclass
        clus
vv       TNXB MUTATED TNXB WILD-TYPE
  CLUS_1            6             48
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2076) Variable = FBXL19 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL19 MUTATED        1      0      0      0
  FBXL19 WILD-TYPE     45     58     64     43
D2076V1, multiclass
[1] "Remove cluster labels:" "FBXL19 MUTATED"        
clus
  FBXL19 MUTATED FBXL19 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXL19 MUTATED        1      0      0
  FBXL19 WILD-TYPE     50     83     77
D2076V2, multiclass
[1] "Remove cluster labels:" "FBXL19 MUTATED"        
clus
  FBXL19 MUTATED FBXL19 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3930       TCGA-AA-3939 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL19 MUTATED        4      3      0      0
  FBXL19 WILD-TYPE    174    180    101     20
D2076V3, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXL19 MUTATED        2      2      2
  FBXL19 WILD-TYPE     85     78     98
D2076V4, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXL19 MUTATED        1      5      0
  FBXL19 WILD-TYPE     88    155    138
D2076V5, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              0              138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXL19 MUTATED        2      3      1
  FBXL19 WILD-TYPE    180    130     71
D2076V6, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL19 MUTATED        2      3      1      1
  FBXL19 WILD-TYPE    110     93     91    185
D2076V7, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              1              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FBXL19 MUTATED        1      2      1      0      1      0      2
  FBXL19 WILD-TYPE     59     48     48     40     62    125     97
D2076V8, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL19 MUTATED        4      1      0      2
  FBXL19 WILD-TYPE    126     77     68    194
D2076V9, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              4              126
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FBXL19 MUTATED        1      1      2      0      2      0      0      1
  FBXL19 WILD-TYPE     39     61     26     80     67     48     43     27
                  vv
clus               CLUS_9
  FBXL19 MUTATED        0
  FBXL19 WILD-TYPE     74
D2076V10, multiclass
        clus
vv       FBXL19 MUTATED FBXL19 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL19 MUTATED        0      1      0      1
  FBXL19 WILD-TYPE     33     30     27     18
D2076V11, multiclass
[1] "Remove cluster labels:" "FBXL19 MUTATED"        
clus
  FBXL19 MUTATED FBXL19 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F5-6464 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL19 MUTATED        1      0      1      0
  FBXL19 WILD-TYPE     53     10     23     22
D2076V12, multiclass
[1] "Remove cluster labels:" "FBXL19 MUTATED"        
clus
  FBXL19 MUTATED FBXL19 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F5-6464 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" "FBXL19 WILD-TYPE" 

Clustering(2077) Variable = ANKRD6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD6 MUTATED        3      0      2      0
  ANKRD6 WILD-TYPE     43     58     62     43
D2077V1, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKRD6 MUTATED        2      2      1
  ANKRD6 WILD-TYPE     49     81     76
D2077V2, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD6 MUTATED       10      3      0      0
  ANKRD6 WILD-TYPE    168    180    101     20
D2077V3, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKRD6 MUTATED        4      0      4
  ANKRD6 WILD-TYPE     83     80     96
D2077V4, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKRD6 MUTATED        1      5      3
  ANKRD6 WILD-TYPE     88    155    135
D2077V5, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKRD6 MUTATED        3      2      4
  ANKRD6 WILD-TYPE    179    131     68
D2077V6, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD6 MUTATED        0      5      2      6
  ANKRD6 WILD-TYPE    112     91     90    180
D2077V7, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              2               90
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD6 MUTATED        0      2      5      0      0      3      3
  ANKRD6 WILD-TYPE     60     48     44     40     63    122     96
D2077V8, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              3              122
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD6 MUTATED        5      1      2      5
  ANKRD6 WILD-TYPE    125     77     66    191
D2077V9, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD6 MUTATED        0      2      1      1      4      1      1      1
  ANKRD6 WILD-TYPE     40     60     27     79     65     47     42     27
                  vv
clus               CLUS_9
  ANKRD6 MUTATED        2
  ANKRD6 WILD-TYPE     72
D2077V10, multiclass
        clus
vv       ANKRD6 MUTATED ANKRD6 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD6 MUTATED        0      0      0      2
  ANKRD6 WILD-TYPE     33     31     27     17
D2077V11, multiclass
[1] "Remove cluster labels:" "ANKRD6 MUTATED"        
clus
  ANKRD6 MUTATED ANKRD6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD6 MUTATED        1      0      1      0
  ANKRD6 WILD-TYPE     53     10     23     22
D2077V12, multiclass
[1] "Remove cluster labels:" "ANKRD6 MUTATED"        
clus
  ANKRD6 MUTATED ANKRD6 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" "ANKRD6 WILD-TYPE" 

Clustering(2078) Variable = WDR17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR17 MUTATED        4      1      1      4
  WDR17 WILD-TYPE     42     57     63     39
D2078V1, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             1              57
  CLUS_3             1              63
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR17 MUTATED        5      3      2
  WDR17 WILD-TYPE     46     80     75
D2078V2, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR17 MUTATED       19      3      4      0
  WDR17 WILD-TYPE    159    180     97     20
D2078V3, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1            19             159
  CLUS_2             3             180
  CLUS_3             4              97
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR17 MUTATED        8      3      4
  WDR17 WILD-TYPE     79     77     96
D2078V4, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             3              77
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR17 MUTATED        1     11      8
  WDR17 WILD-TYPE     88    149    130
D2078V5, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             1              88
  CLUS_2            11             149
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR17 MUTATED        9     10      1
  WDR17 WILD-TYPE    173    123     71
D2078V6, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             9             173
  CLUS_2            10             123
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR17 MUTATED        2      8      5     11
  WDR17 WILD-TYPE    110     88     87    175
D2078V7, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             5              87
  CLUS_4            11             175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  WDR17 MUTATED        3      4      3      2      3      2      9
  WDR17 WILD-TYPE     57     46     46     38     60    123     90
D2078V8, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             4              46
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR17 MUTATED        4      6      2     13
  WDR17 WILD-TYPE    126     72     66    183
D2078V9, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             6              72
  CLUS_3             2              66
  CLUS_4            13             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  WDR17 MUTATED        3      4      3      2      6      0      3      0
  WDR17 WILD-TYPE     37     58     25     78     63     48     40     28
                 vv
clus              CLUS_9
  WDR17 MUTATED        4
  WDR17 WILD-TYPE     70
D2078V10, multiclass
        clus
vv       WDR17 MUTATED WDR17 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             4              58
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             4              70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR17 MUTATED        1      1      0      0
  WDR17 WILD-TYPE     32     30     27     19
D2078V11, multiclass
[1] "Remove cluster labels:" "WDR17 MUTATED"         
clus
  WDR17 MUTATED WDR17 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR17 MUTATED        1      1      0      0
  WDR17 WILD-TYPE     53      9     24     22
D2078V12, multiclass
[1] "Remove cluster labels:" "WDR17 MUTATED"         
clus
  WDR17 MUTATED WDR17 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" "WDR17 WILD-TYPE" 

Clustering(2079) Variable = MRPL47 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL47 MUTATED        1      0      0      3
  MRPL47 WILD-TYPE     45     58     64     40
D2079V1, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL47 MUTATED        2      1      1
  MRPL47 WILD-TYPE     49     82     76
D2079V2, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL47 MUTATED        4      0      0      2
  MRPL47 WILD-TYPE    174    183    101     18
D2079V3, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL47 MUTATED        1      1      1
  MRPL47 WILD-TYPE     86     79     99
D2079V4, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL47 MUTATED        1      3      1
  MRPL47 WILD-TYPE     88    157    137
D2079V5, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL47 MUTATED        2      2      1
  MRPL47 WILD-TYPE    180    131     71
D2079V6, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL47 MUTATED        1      0      1      4
  MRPL47 WILD-TYPE    111     96     91    182
D2079V7, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              0               96
  CLUS_3              1               91
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MRPL47 MUTATED        2      0      1      0      0      0      3
  MRPL47 WILD-TYPE     58     50     48     40     63    125     96
D2079V8, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL47 MUTATED        2      0      0      3
  MRPL47 WILD-TYPE    128     78     68    193
D2079V9, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MRPL47 MUTATED        1      0      1      1      1      1      0      0
  MRPL47 WILD-TYPE     39     62     27     79     68     47     43     28
                  vv
clus               CLUS_9
  MRPL47 MUTATED        0
  MRPL47 WILD-TYPE     74
D2079V10, multiclass
        clus
vv       MRPL47 MUTATED MRPL47 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL47 MUTATED        1      0      0      0
  MRPL47 WILD-TYPE     32     31     27     19
D2079V11, multiclass
[1] "Remove cluster labels:" "MRPL47 MUTATED"        
clus
  MRPL47 MUTATED MRPL47 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-G5-6641 
"MRPL47 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL47 MUTATED        1      0      0      0
  MRPL47 WILD-TYPE     53     10     24     22
D2079V12, multiclass
[1] "Remove cluster labels:" "MRPL47 MUTATED"        
clus
  MRPL47 MUTATED MRPL47 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AZ-4323       TCGA-AZ-4616 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" "MRPL47 WILD-TYPE" 
      TCGA-G5-6641 
"MRPL47 WILD-TYPE" 

Clustering(2080) Variable = TRPV2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        4      0      0      2
  TRPV2 WILD-TYPE     42     58     64     41
D2080V1, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        5      0      1
  TRPV2 WILD-TYPE     46     83     76
D2080V2, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED       12      0      0      0
  TRPV2 WILD-TYPE    166    183    101     20
D2080V3, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             0             183
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        2      0      4
  TRPV2 WILD-TYPE     85     80     96
D2080V4, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        0      4      7
  TRPV2 WILD-TYPE     89    156    131
D2080V5, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        6      4      1
  TRPV2 WILD-TYPE    176    129     71
D2080V6, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        0      3      4      5
  TRPV2 WILD-TYPE    112     93     88    181
D2080V7, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             4              88
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRPV2 MUTATED        1      1      5      0      0      0      5
  TRPV2 WILD-TYPE     59     49     44     40     63    125     94
D2080V8, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        4      1      0      7
  TRPV2 WILD-TYPE    126     77     68    189
D2080V9, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRPV2 MUTATED        0      2      0      1      6      0      1      2
  TRPV2 WILD-TYPE     40     60     28     79     63     48     42     26
                 vv
clus              CLUS_9
  TRPV2 MUTATED        0
  TRPV2 WILD-TYPE     74
D2080V10, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        0      0      0      3
  TRPV2 WILD-TYPE     33     31     27     16
D2080V11, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        2      0      1      0
  TRPV2 WILD-TYPE     52     10     23     22
D2080V12, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2081) Variable = RAG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        3      1      1      4
  RAG1 WILD-TYPE     43     57     63     39
D2081V1, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        3      2      4
  RAG1 WILD-TYPE     48     81     73
D2081V2, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            2             81
  CLUS_3            4             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED       15      2      0      0
  RAG1 WILD-TYPE    163    181    101     20
D2081V3, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1           15            163
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        4      1      3
  RAG1 WILD-TYPE     83     79     97
D2081V4, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        0      6      6
  RAG1 WILD-TYPE     89    154    132
D2081V5, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            6            154
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAG1 MUTATED        5      6      1
  RAG1 WILD-TYPE    177    127     71
D2081V6, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            6            127
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        1      3      3     10
  RAG1 WILD-TYPE    111     93     89    176
D2081V7, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4           10            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAG1 MUTATED        3      1      4      0      0      2      7
  RAG1 WILD-TYPE     57     49     45     40     63    123     92
D2081V8, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            2            123
  CLUS_7            7             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        5      1      0     10
  RAG1 WILD-TYPE    125     77     68    186
D2081V9, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4           10            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RAG1 MUTATED        0      2      2      2      5      2      0      1      2
  RAG1 WILD-TYPE     40     60     26     78     64     46     43     27     72
D2081V10, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            2             26
  CLUS_4            2             78
  CLUS_5            5             64
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        1      0      0      2
  RAG1 WILD-TYPE     32     31     27     17
D2081V11, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAG1 MUTATED        2      0      1      0
  RAG1 WILD-TYPE     52     10     23     22
D2081V12, multiclass
        clus
vv       RAG1 MUTATED RAG1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2082) Variable = IL8 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL8 MUTATED        0      0      0      1
  IL8 WILD-TYPE     46     58     64     42
D2082V1, multiclass
[1] "Remove cluster labels:" "IL8 MUTATED"           
clus
  IL8 MUTATED IL8 WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3575    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3612    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3882    TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3901    TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL8 MUTATED        0      0      1
  IL8 WILD-TYPE     51     83     76
D2082V2, multiclass
[1] "Remove cluster labels:" "IL8 MUTATED"           
clus
  IL8 MUTATED IL8 WILD-TYPE 
            1           210 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AA-A02F    TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3575    TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3594    TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3602    TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3612    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3882    TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-3901    TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-4005    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" "IL8 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL8 MUTATED        4      0      1      1
  IL8 WILD-TYPE    174    183    100     19
D2082V3, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           4           174
  CLUS_2           0           183
  CLUS_3           1           100
  CLUS_4           1            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL8 MUTATED        2      1      2
  IL8 WILD-TYPE     85     79     98
D2082V4, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           2            85
  CLUS_2           1            79
  CLUS_3           2            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL8 MUTATED        0      3      3
  IL8 WILD-TYPE     89    157    135
D2082V5, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           0            89
  CLUS_2           3           157
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IL8 MUTATED        4      2      0
  IL8 WILD-TYPE    178    131     72
D2082V6, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           4           178
  CLUS_2           2           131
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL8 MUTATED        0      0      5      1
  IL8 WILD-TYPE    112     96     87    185
D2082V7, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           0           112
  CLUS_2           0            96
  CLUS_3           5            87
  CLUS_4           1           185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IL8 MUTATED        1      0      3      0      2      0      0
  IL8 WILD-TYPE     59     50     46     40     61    125     99
D2082V8, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           0           125
  CLUS_7           0            99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL8 MUTATED        1      3      0      2
  IL8 WILD-TYPE    129     75     68    194
D2082V9, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           1           129
  CLUS_2           3            75
  CLUS_3           0            68
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IL8 MUTATED        0      4      0      0      2      0      0      0      0
  IL8 WILD-TYPE     40     58     28     80     67     48     43     28     74
D2082V10, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           0            40
  CLUS_2           4            58
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           2            67
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL8 MUTATED        1      1      0      1
  IL8 WILD-TYPE     32     30     27     18
D2082V11, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           1            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL8 MUTATED        3      0      0      0
  IL8 WILD-TYPE     51     10     24     22
D2082V12, multiclass
        clus
vv       IL8 MUTATED IL8 WILD-TYPE
  CLUS_1           3            51
  CLUS_2           0            10
  CLUS_3           0            24
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2083) Variable = CLTCL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLTCL1 MUTATED        3      1      0      3
  CLTCL1 WILD-TYPE     43     57     64     40
D2083V1, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLTCL1 MUTATED        2      2      3
  CLTCL1 WILD-TYPE     49     81     74
D2083V2, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLTCL1 MUTATED       12      4      3      0
  CLTCL1 WILD-TYPE    166    179     98     20
D2083V3, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1             12              166
  CLUS_2              4              179
  CLUS_3              3               98
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLTCL1 MUTATED        3      4      6
  CLTCL1 WILD-TYPE     84     76     94
D2083V4, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              4               76
  CLUS_3              6               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLTCL1 MUTATED        4      6      6
  CLTCL1 WILD-TYPE     85    154    132
D2083V5, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              6              154
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLTCL1 MUTATED        7      6      3
  CLTCL1 WILD-TYPE    175    127     69
D2083V6, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              6              127
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLTCL1 MUTATED        5      4      4      7
  CLTCL1 WILD-TYPE    107     92     88    179
D2083V7, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLTCL1 MUTATED        4      2      3      3      2      2      4
  CLTCL1 WILD-TYPE     56     48     46     37     61    123     95
D2083V8, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              2               48
  CLUS_3              3               46
  CLUS_4              3               37
  CLUS_5              2               61
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLTCL1 MUTATED       10      3      0      7
  CLTCL1 WILD-TYPE    120     75     68    189
D2083V9, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLTCL1 MUTATED        2      3      3      4      3      1      0      3
  CLTCL1 WILD-TYPE     38     59     25     76     66     47     43     25
                  vv
clus               CLUS_9
  CLTCL1 MUTATED        1
  CLTCL1 WILD-TYPE     73
D2083V10, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              3               25
  CLUS_4              4               76
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              3               25
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLTCL1 MUTATED        1      0      1      1
  CLTCL1 WILD-TYPE     32     31     26     18
D2083V11, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLTCL1 MUTATED        1      0      1      1
  CLTCL1 WILD-TYPE     53     10     23     21
D2083V12, multiclass
        clus
vv       CLTCL1 MUTATED CLTCL1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2084) Variable = DCTN4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN4 MUTATED        1      0      0      0
  DCTN4 WILD-TYPE     45     58     64     43
D2084V1, multiclass
[1] "Remove cluster labels:" "DCTN4 MUTATED"         
clus
  DCTN4 MUTATED DCTN4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN4 MUTATED        1      0      0
  DCTN4 WILD-TYPE     50     83     77
D2084V2, multiclass
[1] "Remove cluster labels:" "DCTN4 MUTATED"         
clus
  DCTN4 MUTATED DCTN4 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3812 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN4 MUTATED        2      1      2      1
  DCTN4 WILD-TYPE    176    182     99     19
D2084V3, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN4 MUTATED        4      1      0
  DCTN4 WILD-TYPE     83     79    100
D2084V4, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN4 MUTATED        0      1      4
  DCTN4 WILD-TYPE     89    159    134
D2084V5, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCTN4 MUTATED        3      1      1
  DCTN4 WILD-TYPE    179    132     71
D2084V6, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN4 MUTATED        2      1      2      1
  DCTN4 WILD-TYPE    110     95     90    185
D2084V7, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DCTN4 MUTATED        0      1      2      1      1      0      1
  DCTN4 WILD-TYPE     60     49     47     39     62    125     98
D2084V8, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN4 MUTATED        1      3      1      1
  DCTN4 WILD-TYPE    129     75     67    195
D2084V9, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DCTN4 MUTATED        0      3      0      0      2      0      1      0
  DCTN4 WILD-TYPE     40     59     28     80     67     48     42     28
                 vv
clus              CLUS_9
  DCTN4 MUTATED        0
  DCTN4 WILD-TYPE     74
D2084V10, multiclass
        clus
vv       DCTN4 MUTATED DCTN4 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN4 MUTATED        0      2      0      0
  DCTN4 WILD-TYPE     33     29     27     19
D2084V11, multiclass
[1] "Remove cluster labels:" "DCTN4 MUTATED"         
clus
  DCTN4 MUTATED DCTN4 WILD-TYPE 
              2             108 
     TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCTN4 MUTATED        2      0      0      0
  DCTN4 WILD-TYPE     52     10     24     22
D2084V12, multiclass
[1] "Remove cluster labels:" "DCTN4 MUTATED"         
clus
  DCTN4 MUTATED DCTN4 WILD-TYPE 
              2             108 
     TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653      TCGA-A6-6654 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" "DCTN4 WILD-TYPE" 

Clustering(2085) Variable = KLRK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        3      0      0      1
  KLRK1 WILD-TYPE     43     58     64     42
D2085V1, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRK1 MUTATED        4      0      0
  KLRK1 WILD-TYPE     47     83     77
D2085V2, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        7      0      1      0
  KLRK1 WILD-TYPE    171    183    100     20
D2085V3, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRK1 MUTATED        1      0      4
  KLRK1 WILD-TYPE     86     80     96
D2085V4, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRK1 MUTATED        0      2      3
  KLRK1 WILD-TYPE     89    158    135
D2085V5, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRK1 MUTATED        3      0      2
  KLRK1 WILD-TYPE    179    133     70
D2085V6, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        0      3      1      4
  KLRK1 WILD-TYPE    112     93     91    182
D2085V7, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLRK1 MUTATED        0      1      2      1      0      0      4
  KLRK1 WILD-TYPE     60     49     47     39     63    125     95
D2085V8, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        3      1      0      3
  KLRK1 WILD-TYPE    127     77     68    193
D2085V9, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLRK1 MUTATED        1      1      0      1      2      0      1      1
  KLRK1 WILD-TYPE     39     61     28     79     67     48     42     27
                 vv
clus              CLUS_9
  KLRK1 MUTATED        0
  KLRK1 WILD-TYPE     74
D2085V10, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        0      0      0      1
  KLRK1 WILD-TYPE     33     31     27     18
D2085V11, multiclass
[1] "Remove cluster labels:" "KLRK1 MUTATED"         
clus
  KLRK1 MUTATED KLRK1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-G5-6641 
"KLRK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        1      0      0      0
  KLRK1 WILD-TYPE     53     10     24     22
D2085V12, multiclass
[1] "Remove cluster labels:" "KLRK1 MUTATED"         
clus
  KLRK1 MUTATED KLRK1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" "KLRK1 WILD-TYPE" 
     TCGA-G5-6641 
"KLRK1 WILD-TYPE" 

Clustering(2086) Variable = MGAT5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT5 MUTATED        1      0      0      3
  MGAT5 WILD-TYPE     45     58     64     40
D2086V1, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGAT5 MUTATED        2      0      2
  MGAT5 WILD-TYPE     49     83     75
D2086V2, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT5 MUTATED        7      3      2      0
  MGAT5 WILD-TYPE    171    180     99     20
D2086V3, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGAT5 MUTATED        5      1      3
  MGAT5 WILD-TYPE     82     79     97
D2086V4, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGAT5 MUTATED        2      6      4
  MGAT5 WILD-TYPE     87    154    134
D2086V5, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             6             154
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGAT5 MUTATED        5      3      4
  MGAT5 WILD-TYPE    177    130     68
D2086V6, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT5 MUTATED        2      3      5      3
  MGAT5 WILD-TYPE    110     93     87    183
D2086V7, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MGAT5 MUTATED        0      2      3      3      1      0      4
  MGAT5 WILD-TYPE     60     48     46     37     62    125     95
D2086V8, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             3              37
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT5 MUTATED        4      3      0      6
  MGAT5 WILD-TYPE    126     75     68    190
D2086V9, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MGAT5 MUTATED        1      4      1      0      5      2      0      0
  MGAT5 WILD-TYPE     39     58     27     80     64     46     43     28
                 vv
clus              CLUS_9
  MGAT5 MUTATED        0
  MGAT5 WILD-TYPE     74
D2086V10, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT5 MUTATED        2      1      0      1
  MGAT5 WILD-TYPE     31     30     27     18
D2086V11, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGAT5 MUTATED        3      0      1      0
  MGAT5 WILD-TYPE     51     10     23     22
D2086V12, multiclass
        clus
vv       MGAT5 MUTATED MGAT5 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2087) Variable = SPANXN3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        0      0      0      1
  SPANXN3 WILD-TYPE     46     58     64     42
D2087V1, multiclass
[1] "Remove cluster labels:" "SPANXN3 MUTATED"       
clus
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN3 MUTATED        0      0      1
  SPANXN3 WILD-TYPE     51     83     76
D2087V2, multiclass
[1] "Remove cluster labels:" "SPANXN3 MUTATED"       
clus
  SPANXN3 MUTATED SPANXN3 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SPANXN3 WILD-TYPE" "SPANXN3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        5      4      0      0
  SPANXN3 WILD-TYPE    173    179    101     20
D2087V3, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               4               179
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN3 MUTATED        3      3      2
  SPANXN3 WILD-TYPE     84     77     98
D2087V4, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               3                77
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN3 MUTATED        2      4      3
  SPANXN3 WILD-TYPE     87    156    135
D2087V5, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               156
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPANXN3 MUTATED        4      4      1
  SPANXN3 WILD-TYPE    178    129     71
D2087V6, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        4      2      2      1
  SPANXN3 WILD-TYPE    108     94     90    185
D2087V7, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               4               108
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPANXN3 MUTATED        2      1      3      1      2      0      0
  SPANXN3 WILD-TYPE     58     49     46     39     61    125     99
D2087V8, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               2                61
  CLUS_6               0               125
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        4      1      2      2
  SPANXN3 WILD-TYPE    126     77     66    194
D2087V9, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               1                77
  CLUS_3               2                66
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SPANXN3 MUTATED        1      1      0      1      3      2      0      0
  SPANXN3 WILD-TYPE     39     61     28     79     66     46     43     28
                   vv
clus                CLUS_9
  SPANXN3 MUTATED        1
  SPANXN3 WILD-TYPE     73
D2087V10, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               2                46
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        0      1      1      1
  SPANXN3 WILD-TYPE     33     30     26     18
D2087V11, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                30
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXN3 MUTATED        0      1      0      2
  SPANXN3 WILD-TYPE     54      9     24     20
D2087V12, multiclass
        clus
vv       SPANXN3 MUTATED SPANXN3 WILD-TYPE
  CLUS_1               0                54
  CLUS_2               1                 9
  CLUS_3               0                24
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2088) Variable = CYP27B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        2      0      0      1
  CYP27B1 WILD-TYPE     44     58     64     42
D2088V1, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               1                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        3      0      0
  CYP27B1 WILD-TYPE     48     83     77
D2088V2, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               3                48
  CLUS_2               0                83
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        7      0      1      0
  CYP27B1 WILD-TYPE    171    183    100     20
D2088V3, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               7               171
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        2      0      3
  CYP27B1 WILD-TYPE     85     80     97
D2088V4, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        2      1      4
  CYP27B1 WILD-TYPE     87    159    134
D2088V5, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               1               159
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        3      3      1
  CYP27B1 WILD-TYPE    179    130     71
D2088V6, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        0      3      2      3
  CYP27B1 WILD-TYPE    112     93     90    183
D2088V7, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CYP27B1 MUTATED        0      2      2      0      1      0      3
  CYP27B1 WILD-TYPE     60     48     47     40     62    125     96
D2088V8, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        2      1      0      4
  CYP27B1 WILD-TYPE    128     77     68    192
D2088V9, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CYP27B1 MUTATED        1      0      0      2      2      0      0      1
  CYP27B1 WILD-TYPE     39     62     28     78     67     48     43     27
                   vv
clus                CLUS_9
  CYP27B1 MUTATED        1
  CYP27B1 WILD-TYPE     73
D2088V10, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        0      1      0      1
  CYP27B1 WILD-TYPE     33     30     27     18
D2088V11, multiclass
[1] "Remove cluster labels:" "CYP27B1 MUTATED"       
clus
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        2      0      0      0
  CYP27B1 WILD-TYPE     52     10     24     22
D2088V12, multiclass
[1] "Remove cluster labels:" "CYP27B1 MUTATED"       
clus
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6704        TCGA-F4-6805 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" "CYP27B1 WILD-TYPE" 

Clustering(2089) Variable = CASC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        2      0      1      3
  CASC5 WILD-TYPE     44     58     63     40
D2089V1, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC5 MUTATED        1      2      3
  CASC5 WILD-TYPE     50     81     74
D2089V2, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED       18      2      1      1
  CASC5 WILD-TYPE    160    181    100     19
D2089V3, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC5 MUTATED        9      2      5
  CASC5 WILD-TYPE     78     78     95
D2089V4, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             9              78
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC5 MUTATED        1      8      8
  CASC5 WILD-TYPE     88    152    130
D2089V5, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             8             152
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC5 MUTATED        8      8      1
  CASC5 WILD-TYPE    174    125     71
D2089V6, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             8             125
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        3      4      7      8
  CASC5 WILD-TYPE    109     92     85    178
D2089V7, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             3             109
  CLUS_2             4              92
  CLUS_3             7              85
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CASC5 MUTATED        4      1      9      0      1      3      4
  CASC5 WILD-TYPE     56     49     40     40     62    122     95
D2089V8, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             9              40
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        9      3      0     10
  CASC5 WILD-TYPE    121     75     68    186
D2089V9, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CASC5 MUTATED        0      5      3      1      7      3      0      0
  CASC5 WILD-TYPE     40     57     25     79     62     45     43     28
                 vv
clus              CLUS_9
  CASC5 MUTATED        3
  CASC5 WILD-TYPE     71
D2089V10, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             3              25
  CLUS_4             1              79
  CLUS_5             7              62
  CLUS_6             3              45
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             3              71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        1      0      0      4
  CASC5 WILD-TYPE     32     31     27     15
D2089V11, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             4              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        3      0      2      0
  CASC5 WILD-TYPE     51     10     22     22
D2089V12, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2090) Variable = PRKCG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCG MUTATED        7      1      0      2
  PRKCG WILD-TYPE     39     57     64     41
D2090V1, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             7              39
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCG MUTATED        7      2      1
  PRKCG WILD-TYPE     44     81     76
D2090V2, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             7              44
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCG MUTATED       15      3      6      0
  PRKCG WILD-TYPE    163    180     95     20
D2090V3, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1            15             163
  CLUS_2             3             180
  CLUS_3             6              95
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCG MUTATED        4      2      8
  PRKCG WILD-TYPE     83     78     92
D2090V4, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCG MUTATED        2      7     10
  PRKCG WILD-TYPE     87    153    128
D2090V5, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             2              87
  CLUS_2             7             153
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRKCG MUTATED        9      7      3
  PRKCG WILD-TYPE    173    126     69
D2090V6, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             9             173
  CLUS_2             7             126
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCG MUTATED        2      7      6      9
  PRKCG WILD-TYPE    110     89     86    177
D2090V7, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             2             110
  CLUS_2             7              89
  CLUS_3             6              86
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKCG MUTATED        2      3      6      1      3      2      7
  PRKCG WILD-TYPE     58     47     43     39     60    123     92
D2090V8, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             2             123
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCG MUTATED        6      5      1     10
  PRKCG WILD-TYPE    124     73     67    186
D2090V9, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             6             124
  CLUS_2             5              73
  CLUS_3             1              67
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKCG MUTATED        1      3      2      3     10      0      1      1
  PRKCG WILD-TYPE     39     59     26     77     59     48     42     27
                 vv
clus              CLUS_9
  PRKCG MUTATED        1
  PRKCG WILD-TYPE     73
D2090V10, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5            10              59
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCG MUTATED        0      1      0      2
  PRKCG WILD-TYPE     33     30     27     17
D2090V11, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKCG MUTATED        2      0      1      0
  PRKCG WILD-TYPE     52     10     23     22
D2090V12, multiclass
        clus
vv       PRKCG MUTATED PRKCG WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2091) Variable = COL11A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED        6      2      5      4
  COL11A1 WILD-TYPE     40     56     59     39
D2091V1, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6                40
  CLUS_2               2                56
  CLUS_3               5                59
  CLUS_4               4                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL11A1 MUTATED        6      7      4
  COL11A1 WILD-TYPE     45     76     73
D2091V2, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               7                76
  CLUS_3               4                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED       34     11      7      0
  COL11A1 WILD-TYPE    144    172     94     20
D2091V3, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              34               144
  CLUS_2              11               172
  CLUS_3               7                94
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL11A1 MUTATED       10      5     19
  COL11A1 WILD-TYPE     77     75     81
D2091V4, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              10                77
  CLUS_2               5                75
  CLUS_3              19                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL11A1 MUTATED        6     15     22
  COL11A1 WILD-TYPE     83    145    116
D2091V5, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6                83
  CLUS_2              15               145
  CLUS_3              22               116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL11A1 MUTATED       19     15      9
  COL11A1 WILD-TYPE    163    118     63
D2091V6, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              19               163
  CLUS_2              15               118
  CLUS_3               9                63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED        8     16     11     17
  COL11A1 WILD-TYPE    104     80     81    169
D2091V7, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               8               104
  CLUS_2              16                80
  CLUS_3              11                81
  CLUS_4              17               169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL11A1 MUTATED        3      9     15      2      6      4     13
  COL11A1 WILD-TYPE     57     41     34     38     57    121     86
D2091V8, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               3                57
  CLUS_2               9                41
  CLUS_3              15                34
  CLUS_4               2                38
  CLUS_5               6                57
  CLUS_6               4               121
  CLUS_7              13                86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED       18      7      4     21
  COL11A1 WILD-TYPE    112     71     64    175
D2091V9, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              18               112
  CLUS_2               7                71
  CLUS_3               4                64
  CLUS_4              21               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COL11A1 MUTATED        4      8      5      5     13      2      6      1
  COL11A1 WILD-TYPE     36     54     23     75     56     46     37     27
                   vv
clus                CLUS_9
  COL11A1 MUTATED        6
  COL11A1 WILD-TYPE     68
D2091V10, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               4                36
  CLUS_2               8                54
  CLUS_3               5                23
  CLUS_4               5                75
  CLUS_5              13                56
  CLUS_6               2                46
  CLUS_7               6                37
  CLUS_8               1                27
  CLUS_9               6                68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED        3      2      1      5
  COL11A1 WILD-TYPE     30     29     26     14
D2091V11, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               2                29
  CLUS_3               1                26
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED        6      0      2      3
  COL11A1 WILD-TYPE     48     10     22     19
D2091V12, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6                48
  CLUS_2               0                10
  CLUS_3               2                22
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2092) Variable = OR5L2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5L2 MUTATED        0      0      1      1
  OR5L2 WILD-TYPE     46     58     63     42
D2092V1, multiclass
[1] "Remove cluster labels:" "OR5L2 MUTATED"         
clus
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AY-4071 
"OR5L2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5L2 MUTATED        0      1      1
  OR5L2 WILD-TYPE     51     82     76
D2092V2, multiclass
[1] "Remove cluster labels:" "OR5L2 MUTATED"         
clus
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-AY-4071 
"OR5L2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5L2 MUTATED       10      2      3      0
  OR5L2 WILD-TYPE    168    181     98     20
D2092V3, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5L2 MUTATED        6      1      6
  OR5L2 WILD-TYPE     81     79     94
D2092V4, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5L2 MUTATED        2      4      6
  OR5L2 WILD-TYPE     87    156    132
D2092V5, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5L2 MUTATED        7      3      2
  OR5L2 WILD-TYPE    175    130     70
D2092V6, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             3             130
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5L2 MUTATED        2      6      5      2
  OR5L2 WILD-TYPE    110     90     87    184
D2092V7, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             5              87
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5L2 MUTATED        5      3      5      0      1      1      0
  OR5L2 WILD-TYPE     55     47     44     40     62    124     99
D2092V8, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             3              47
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5L2 MUTATED        6      2      5      2
  OR5L2 WILD-TYPE    124     76     63    194
D2092V9, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             5              63
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5L2 MUTATED        0      5      1      1      4      0      3      0
  OR5L2 WILD-TYPE     40     57     27     79     65     48     40     28
                 vv
clus              CLUS_9
  OR5L2 MUTATED        1
  OR5L2 WILD-TYPE     73
D2092V10, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             3              40
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5L2 MUTATED        1      0      0      2
  OR5L2 WILD-TYPE     32     31     27     17
D2092V11, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5L2 MUTATED        3      0      0      0
  OR5L2 WILD-TYPE     51     10     24     22
D2092V12, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2093) Variable = EHBP1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1L1 MUTATED        0      0      1      1
  EHBP1L1 WILD-TYPE     46     58     63     42
D2093V1, multiclass
[1] "Remove cluster labels:" "EHBP1L1 MUTATED"       
clus
  EHBP1L1 MUTATED EHBP1L1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866        TCGA-AA-3867 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AY-4071 
"EHBP1L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EHBP1L1 MUTATED        1      1      0
  EHBP1L1 WILD-TYPE     50     82     77
D2093V2, multiclass
[1] "Remove cluster labels:" "EHBP1L1 MUTATED"       
clus
  EHBP1L1 MUTATED EHBP1L1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3696 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866        TCGA-AA-3867 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" "EHBP1L1 WILD-TYPE" 
       TCGA-AY-4071 
"EHBP1L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1L1 MUTATED        5      1      2      0
  EHBP1L1 WILD-TYPE    173    182     99     20
D2093V3, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               1               182
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EHBP1L1 MUTATED        3      0      3
  EHBP1L1 WILD-TYPE     84     80     97
D2093V4, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EHBP1L1 MUTATED        2      1      3
  EHBP1L1 WILD-TYPE     87    159    135
D2093V5, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               1               159
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EHBP1L1 MUTATED        3      1      2
  EHBP1L1 WILD-TYPE    179    132     70
D2093V6, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               1               132
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1L1 MUTATED        0      4      3      1
  EHBP1L1 WILD-TYPE    112     92     89    185
D2093V7, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               3                89
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EHBP1L1 MUTATED        0      2      3      2      0      0      1
  EHBP1L1 WILD-TYPE     60     48     46     38     63    125     98
D2093V8, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               3                46
  CLUS_4               2                38
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1L1 MUTATED        3      2      0      3
  EHBP1L1 WILD-TYPE    127     76     68    193
D2093V9, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EHBP1L1 MUTATED        0      2      1      1      3      0      0      0
  EHBP1L1 WILD-TYPE     40     60     27     79     66     48     43     28
                   vv
clus                CLUS_9
  EHBP1L1 MUTATED        1
  EHBP1L1 WILD-TYPE     73
D2093V10, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1L1 MUTATED        1      1      0      1
  EHBP1L1 WILD-TYPE     32     30     27     18
D2093V11, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1L1 MUTATED        1      0      1      1
  EHBP1L1 WILD-TYPE     53     10     23     21
D2093V12, multiclass
        clus
vv       EHBP1L1 MUTATED EHBP1L1 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2094) Variable = CNOT6L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6L MUTATED        1      0      0      1
  CNOT6L WILD-TYPE     45     58     64     42
D2094V1, multiclass
[1] "Remove cluster labels:" "CNOT6L MUTATED"        
clus
  CNOT6L MUTATED CNOT6L WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AY-4071 
"CNOT6L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT6L MUTATED        1      0      1
  CNOT6L WILD-TYPE     50     83     76
D2094V2, multiclass
[1] "Remove cluster labels:" "CNOT6L MUTATED"        
clus
  CNOT6L MUTATED CNOT6L WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3950 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3893 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AY-4071 
"CNOT6L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6L MUTATED        5      2      0      0
  CNOT6L WILD-TYPE    173    181    101     20
D2094V3, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              5              173
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT6L MUTATED        1      1      2
  CNOT6L WILD-TYPE     86     79     98
D2094V4, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT6L MUTATED        0      4      1
  CNOT6L WILD-TYPE     89    156    137
D2094V5, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNOT6L MUTATED        0      4      1
  CNOT6L WILD-TYPE    182    129     71
D2094V6, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              0              182
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6L MUTATED        1      2      0      4
  CNOT6L WILD-TYPE    111     94     92    182
D2094V7, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CNOT6L MUTATED        1      2      0      0      0      0      4
  CNOT6L WILD-TYPE     59     48     49     40     63    125     95
D2094V8, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6L MUTATED        2      0      1      4
  CNOT6L WILD-TYPE    128     78     67    192
D2094V9, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CNOT6L MUTATED        1      0      1      1      2      0      1      0
  CNOT6L WILD-TYPE     39     62     27     79     67     48     42     28
                  vv
clus               CLUS_9
  CNOT6L MUTATED        1
  CNOT6L WILD-TYPE     73
D2094V10, multiclass
        clus
vv       CNOT6L MUTATED CNOT6L WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6L MUTATED        0      0      1      0
  CNOT6L WILD-TYPE     33     31     26     19
D2094V11, multiclass
[1] "Remove cluster labels:" "CNOT6L MUTATED"        
clus
  CNOT6L MUTATED CNOT6L WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6621 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-G5-6641 
"CNOT6L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6L MUTATED        0      0      0      1
  CNOT6L WILD-TYPE     54     10     24     21
D2094V12, multiclass
[1] "Remove cluster labels:" "CNOT6L MUTATED"        
clus
  CNOT6L MUTATED CNOT6L WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6621 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" "CNOT6L WILD-TYPE" 
      TCGA-G5-6641 
"CNOT6L WILD-TYPE" 

Clustering(2095) Variable = C3ORF27 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF27 MUTATED        0      0      1      1
  C3ORF27 WILD-TYPE     46     58     63     42
D2095V1, multiclass
[1] "Remove cluster labels:" "C3ORF27 MUTATED"       
clus
  C3ORF27 MUTATED C3ORF27 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3851        TCGA-AA-3852 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AY-4071 
"C3ORF27 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF27 MUTATED        0      1      1
  C3ORF27 WILD-TYPE     51     82     76
D2095V2, multiclass
[1] "Remove cluster labels:" "C3ORF27 MUTATED"       
clus
  C3ORF27 MUTATED C3ORF27 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3851        TCGA-AA-3852 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AY-4071 
"C3ORF27 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF27 MUTATED        2      0      1      0
  C3ORF27 WILD-TYPE    176    183    100     20
D2095V3, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               0               183
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF27 MUTATED        0      1      0
  C3ORF27 WILD-TYPE     87     79    100
D2095V4, multiclass
[1] "Remove cluster labels:" "C3ORF27 MUTATED"       
clus
  C3ORF27 MUTATED C3ORF27 WILD-TYPE 
                1               266 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AF-2693        TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AZ-4681        TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6717 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CK-4948        TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CK-5913        TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CK-6746        TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CL-5917        TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6924 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"C3ORF27 WILD-TYPE" "C3ORF27 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF27 MUTATED        0      2      1
  C3ORF27 WILD-TYPE     89    158    137
D2095V5, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               1               137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF27 MUTATED        1      2      0
  C3ORF27 WILD-TYPE    181    131     72
D2095V6, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF27 MUTATED        0      0      1      2
  C3ORF27 WILD-TYPE    112     96     91    184
D2095V7, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               0                96
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C3ORF27 MUTATED        0      0      0      0      1      1      1
  C3ORF27 WILD-TYPE     60     50     49     40     62    124     98
D2095V8, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF27 MUTATED        1      0      0      2
  C3ORF27 WILD-TYPE    129     78     68    194
D2095V9, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C3ORF27 MUTATED        1      0      1      0      0      0      0      1
  C3ORF27 WILD-TYPE     39     62     27     80     69     48     43     27
                   vv
clus                CLUS_9
  C3ORF27 MUTATED        0
  C3ORF27 WILD-TYPE     74
D2095V10, multiclass
        clus
vv       C3ORF27 MUTATED C3ORF27 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                62
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               0                69
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF27 MUTATED        0      0      0      0
  C3ORF27 WILD-TYPE     33     31     27     19
D2095V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF27 MUTATED        0      0      0      0
  C3ORF27 WILD-TYPE     54     10     24     22
D2095V12, multiclass

Clustering(2096) Variable = TNFRSF13B MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        2      1      0      1
  TNFRSF13B WILD-TYPE     44     57     64     42
D2096V1, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                  44
  CLUS_2                 1                  57
  CLUS_3                 0                  64
  CLUS_4                 1                  42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF13B MUTATED        2      2      0
  TNFRSF13B WILD-TYPE     49     81     77
D2096V2, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                  49
  CLUS_2                 2                  81
  CLUS_3                 0                  77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        4      0      3      0
  TNFRSF13B WILD-TYPE    174    183     98     20
D2096V3, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 4                 174
  CLUS_2                 0                 183
  CLUS_3                 3                  98
  CLUS_4                 0                  20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF13B MUTATED        2      0      1
  TNFRSF13B WILD-TYPE     85     80     99
D2096V4, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                  85
  CLUS_2                 0                  80
  CLUS_3                 1                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF13B MUTATED        2      2      1
  TNFRSF13B WILD-TYPE     87    158    137
D2096V5, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                  87
  CLUS_2                 2                 158
  CLUS_3                 1                 137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF13B MUTATED        3      2      0
  TNFRSF13B WILD-TYPE    179    131     72
D2096V6, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 3                 179
  CLUS_2                 2                 131
  CLUS_3                 0                  72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        2      1      1      3
  TNFRSF13B WILD-TYPE    110     95     91    183
D2096V7, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                 110
  CLUS_2                 1                  95
  CLUS_3                 1                  91
  CLUS_4                 3                 183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNFRSF13B MUTATED        0      0      1      1      1      1      3
  TNFRSF13B WILD-TYPE     60     50     48     39     62    124     96
D2096V8, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 0                  60
  CLUS_2                 0                  50
  CLUS_3                 1                  48
  CLUS_4                 1                  39
  CLUS_5                 1                  62
  CLUS_6                 1                 124
  CLUS_7                 3                  96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        0      1      1      4
  TNFRSF13B WILD-TYPE    130     77     67    192
D2096V9, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 0                 130
  CLUS_2                 1                  77
  CLUS_3                 1                  67
  CLUS_4                 4                 192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TNFRSF13B MUTATED        0      1      1      0      2      0      1      1
  TNFRSF13B WILD-TYPE     40     61     27     80     67     48     42     27
                     vv
clus                  CLUS_9
  TNFRSF13B MUTATED        0
  TNFRSF13B WILD-TYPE     74
D2096V10, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 0                  40
  CLUS_2                 1                  61
  CLUS_3                 1                  27
  CLUS_4                 0                  80
  CLUS_5                 2                  67
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 1                  27
  CLUS_9                 0                  74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        0      1      1      0
  TNFRSF13B WILD-TYPE     33     30     26     19
D2096V11, multiclass
[1] "Remove cluster labels:" "TNFRSF13B MUTATED"     
clus
  TNFRSF13B MUTATED TNFRSF13B WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6651 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-A6-6653          TCGA-A6-6654          TCGA-A6-6781 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-A6-6782          TCGA-AA-3489          TCGA-AA-3511 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AD-5900          TCGA-AD-6548          TCGA-AD-6889 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AD-6901          TCGA-AD-6963          TCGA-AD-6964 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6683          TCGA-DM-A0XD 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A0XF          TCGA-DM-A1D0          TCGA-DM-A1D7 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A1D8          TCGA-DM-A1D9          TCGA-DM-A1DA 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A282          TCGA-DM-A285 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A28F          TCGA-DY-A1DC          TCGA-DY-A1DD 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EI-6506 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-EI-6507          TCGA-F4-6459          TCGA-F4-6460 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F4-6569          TCGA-F4-6570          TCGA-F4-6704 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6807          TCGA-F4-6808 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F4-6809          TCGA-F5-6464          TCGA-F5-6465 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F5-6571          TCGA-F5-6702          TCGA-F5-6811 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F5-6812          TCGA-G4-6299          TCGA-G4-6303 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-G4-6306          TCGA-G4-6309          TCGA-G4-6625 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-G4-6628          TCGA-G5-6235          TCGA-G5-6641 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        1      0      0      1
  TNFRSF13B WILD-TYPE     53     10     24     21
D2096V12, multiclass
[1] "Remove cluster labels:" "TNFRSF13B MUTATED"     
clus
  TNFRSF13B MUTATED TNFRSF13B WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6651 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-A6-6653          TCGA-A6-6654          TCGA-A6-6781 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-A6-6782          TCGA-AA-3489          TCGA-AA-3511 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AD-5900          TCGA-AD-6548          TCGA-AD-6889 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AD-6901          TCGA-AD-6963          TCGA-AD-6964 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AD-6965          TCGA-AF-2687          TCGA-AF-4110 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AF-6655          TCGA-AF-6672          TCGA-AG-3731 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AG-3732          TCGA-AH-6544          TCGA-AH-6547 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AH-6549          TCGA-AH-6643          TCGA-AY-6196 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AZ-4323          TCGA-AZ-4616          TCGA-AZ-5403 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AZ-6598          TCGA-AZ-6600          TCGA-AZ-6601 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-AZ-6603          TCGA-AZ-6605          TCGA-AZ-6607 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CA-6718          TCGA-CA-6719          TCGA-CI-6619 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CI-6620          TCGA-CI-6621          TCGA-CI-6624 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CK-5916          TCGA-CK-6748          TCGA-CL-5918 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CM-5860          TCGA-CM-6167          TCGA-CM-6674 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CM-6676          TCGA-CM-6677          TCGA-CM-6678 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-CM-6679          TCGA-CM-6680          TCGA-D5-5537 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-D5-6533          TCGA-D5-6534          TCGA-D5-6536 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-D5-6922          TCGA-D5-6924          TCGA-DC-5337 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DC-5869          TCGA-DC-6157          TCGA-DC-6158 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DC-6681          TCGA-DC-6683          TCGA-DM-A0XD 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A0XF          TCGA-DM-A1D0          TCGA-DM-A1D7 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A1D8          TCGA-DM-A1D9          TCGA-DM-A1DA 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A1HA          TCGA-DM-A282          TCGA-DM-A285 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DM-A28F          TCGA-DY-A1DC          TCGA-DY-A1DD 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-DY-A1DG          TCGA-DY-A1H8          TCGA-EI-6506 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-EI-6507          TCGA-F4-6459          TCGA-F4-6460 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F4-6569          TCGA-F4-6570          TCGA-F4-6704 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F4-6805          TCGA-F4-6807          TCGA-F4-6808 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F4-6809          TCGA-F5-6464          TCGA-F5-6465 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F5-6571          TCGA-F5-6702          TCGA-F5-6811 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-F5-6812          TCGA-G4-6299          TCGA-G4-6303 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-G4-6306          TCGA-G4-6309          TCGA-G4-6625 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 
         TCGA-G4-6628          TCGA-G5-6235          TCGA-G5-6641 
"TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" "TNFRSF13B WILD-TYPE" 

Clustering(2097) Variable = OTUD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        2      0      0      3
  OTUD4 WILD-TYPE     44     58     64     40
D2097V1, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        4      1      0
  OTUD4 WILD-TYPE     47     82     77
D2097V2, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED       16      3      1      0
  OTUD4 WILD-TYPE    162    180    100     20
D2097V3, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        5      2      8
  OTUD4 WILD-TYPE     82     78     92
D2097V4, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             2              78
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        3      9      6
  OTUD4 WILD-TYPE     86    151    132
D2097V5, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             9             151
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        6     10      2
  OTUD4 WILD-TYPE    176    123     70
D2097V6, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             6             176
  CLUS_2            10             123
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        2      8      4      6
  OTUD4 WILD-TYPE    110     88     88    180
D2097V7, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             8              88
  CLUS_3             4              88
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OTUD4 MUTATED        3      3      6      1      0      0      7
  OTUD4 WILD-TYPE     57     47     43     39     63    125     92
D2097V8, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             3              47
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             7              92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        8      1      1      9
  OTUD4 WILD-TYPE    122     77     67    187
D2097V9, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             8             122
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OTUD4 MUTATED        1      1      1      1      8      1      4      0
  OTUD4 WILD-TYPE     39     61     27     79     61     47     39     28
                 vv
clus              CLUS_9
  OTUD4 MUTATED        2
  OTUD4 WILD-TYPE     72
D2097V10, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             8              61
  CLUS_6             1              47
  CLUS_7             4              39
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        0      0      0      2
  OTUD4 WILD-TYPE     33     31     27     17
D2097V11, multiclass
[1] "Remove cluster labels:" "OTUD4 MUTATED"         
clus
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        1      0      1      0
  OTUD4 WILD-TYPE     53     10     23     22
D2097V12, multiclass
[1] "Remove cluster labels:" "OTUD4 MUTATED"         
clus
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 

Clustering(2098) Variable = MYO5A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO5A MUTATED        2      1      2      4
  MYO5A WILD-TYPE     44     57     62     39
D2098V1, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              57
  CLUS_3             2              62
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO5A MUTATED        2      5      2
  MYO5A WILD-TYPE     49     78     75
D2098V2, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             2              49
  CLUS_2             5              78
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO5A MUTATED       12      4      7      0
  MYO5A WILD-TYPE    166    179     94     20
D2098V3, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1            12             166
  CLUS_2             4             179
  CLUS_3             7              94
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO5A MUTATED        6      4      4
  MYO5A WILD-TYPE     81     76     96
D2098V4, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO5A MUTATED        6      5      7
  MYO5A WILD-TYPE     83    155    131
D2098V5, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             6              83
  CLUS_2             5             155
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO5A MUTATED        9      7      2
  MYO5A WILD-TYPE    173    126     70
D2098V6, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             9             173
  CLUS_2             7             126
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO5A MUTATED       10      3      3      7
  MYO5A WILD-TYPE    102     93     89    179
D2098V7, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1            10             102
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYO5A MUTATED        5      2      2      4      2      4      4
  MYO5A WILD-TYPE     55     48     47     36     61    121     95
D2098V8, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             5              55
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             4              36
  CLUS_5             2              61
  CLUS_6             4             121
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO5A MUTATED        7      4      2      8
  MYO5A WILD-TYPE    123     74     66    188
D2098V9, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             7             123
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYO5A MUTATED        1      3      1      4      4      3      2      1
  MYO5A WILD-TYPE     39     59     27     76     65     45     41     27
                 vv
clus              CLUS_9
  MYO5A MUTATED        2
  MYO5A WILD-TYPE     72
D2098V10, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             4              65
  CLUS_6             3              45
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO5A MUTATED        1      2      1      0
  MYO5A WILD-TYPE     32     29     26     19
D2098V11, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              29
  CLUS_3             1              26
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO5A MUTATED        2      0      0      2
  MYO5A WILD-TYPE     52     10     24     20
D2098V12, multiclass
        clus
vv       MYO5A MUTATED MYO5A WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2099) Variable = MNT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNT MUTATED        0      0      1      1
  MNT WILD-TYPE     46     58     63     42
D2099V1, multiclass
[1] "Remove cluster labels:" "MNT MUTATED"           
clus
  MNT MUTATED MNT WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3866    TCGA-AA-3869 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877    TCGA-AA-3930 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3950 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966    TCGA-AA-3968 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975    TCGA-AA-3976 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982    TCGA-AA-3984 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004    TCGA-AA-A00A 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MNT MUTATED        1      1      0
  MNT WILD-TYPE     50     82     77
D2099V2, multiclass
[1] "Remove cluster labels:" "MNT MUTATED"           
clus
  MNT MUTATED MNT WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3866    TCGA-AA-3869 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877    TCGA-AA-3930 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3950 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966    TCGA-AA-3968 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975    TCGA-AA-3976 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982    TCGA-AA-3984 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004    TCGA-AA-A00A 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" "MNT WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNT MUTATED        6      0      2      0
  MNT WILD-TYPE    172    183     99     20
D2099V3, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           6           172
  CLUS_2           0           183
  CLUS_3           2            99
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MNT MUTATED        3      0      3
  MNT WILD-TYPE     84     80     97
D2099V4, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           3            84
  CLUS_2           0            80
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MNT MUTATED        2      1      4
  MNT WILD-TYPE     87    159    134
D2099V5, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           2            87
  CLUS_2           1           159
  CLUS_3           4           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MNT MUTATED        4      2      1
  MNT WILD-TYPE    178    131     71
D2099V6, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           4           178
  CLUS_2           2           131
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNT MUTATED        0      2      4      2
  MNT WILD-TYPE    112     94     88    184
D2099V7, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           0           112
  CLUS_2           2            94
  CLUS_3           4            88
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MNT MUTATED        0      1      3      0      1      1      2
  MNT WILD-TYPE     60     49     46     40     62    124     97
D2099V8, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           0            60
  CLUS_2           1            49
  CLUS_3           3            46
  CLUS_4           0            40
  CLUS_5           1            62
  CLUS_6           1           124
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNT MUTATED        1      2      0      5
  MNT WILD-TYPE    129     76     68    191
D2099V9, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           1           129
  CLUS_2           2            76
  CLUS_3           0            68
  CLUS_4           5           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  MNT MUTATED        0      2      0      2      4      0      0      0      0
  MNT WILD-TYPE     40     60     28     78     65     48     43     28     74
D2099V10, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           0            40
  CLUS_2           2            60
  CLUS_3           0            28
  CLUS_4           2            78
  CLUS_5           4            65
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           0            74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNT MUTATED        0      1      0      2
  MNT WILD-TYPE     33     30     27     17
D2099V11, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           0            33
  CLUS_2           1            30
  CLUS_3           0            27
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNT MUTATED        2      0      1      0
  MNT WILD-TYPE     52     10     23     22
D2099V12, multiclass
        clus
vv       MNT MUTATED MNT WILD-TYPE
  CLUS_1           2            52
  CLUS_2           0            10
  CLUS_3           1            23
  CLUS_4           0            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2100) Variable = CAMK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMK1 MUTATED        1      0      0      2
  CAMK1 WILD-TYPE     45     58     64     41
D2100V1, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAMK1 MUTATED        2      0      1
  CAMK1 WILD-TYPE     49     83     76
D2100V2, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMK1 MUTATED        7      1      0      0
  CAMK1 WILD-TYPE    171    182    101     20
D2100V3, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAMK1 MUTATED        2      1      2
  CAMK1 WILD-TYPE     85     79     98
D2100V4, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAMK1 MUTATED        1      3      4
  CAMK1 WILD-TYPE     88    157    134
D2100V5, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAMK1 MUTATED        5      3      0
  CAMK1 WILD-TYPE    177    130     72
D2100V6, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMK1 MUTATED        1      3      1      3
  CAMK1 WILD-TYPE    111     93     91    183
D2100V7, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CAMK1 MUTATED        1      2      2      1      0      0      2
  CAMK1 WILD-TYPE     59     48     47     39     63    125     97
D2100V8, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMK1 MUTATED        4      1      0      2
  CAMK1 WILD-TYPE    126     77     68    194
D2100V9, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CAMK1 MUTATED        1      1      1      0      3      1      0      0
  CAMK1 WILD-TYPE     39     61     27     80     66     47     43     28
                 vv
clus              CLUS_9
  CAMK1 MUTATED        0
  CAMK1 WILD-TYPE     74
D2100V10, multiclass
        clus
vv       CAMK1 MUTATED CAMK1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMK1 MUTATED        0      0      0      2
  CAMK1 WILD-TYPE     33     31     27     17
D2100V11, multiclass
[1] "Remove cluster labels:" "CAMK1 MUTATED"         
clus
  CAMK1 MUTATED CAMK1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMK1 MUTATED        1      0      1      0
  CAMK1 WILD-TYPE     53     10     23     22
D2100V12, multiclass
[1] "Remove cluster labels:" "CAMK1 MUTATED"         
clus
  CAMK1 MUTATED CAMK1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6603 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" "CAMK1 WILD-TYPE" 

Clustering(2101) Variable = SRRM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRM3 MUTATED        0      0      0      1
  SRRM3 WILD-TYPE     46     58     64     42
D2101V1, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRRM3 MUTATED        0      0      1
  SRRM3 WILD-TYPE     51     83     76
D2101V2, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRM3 MUTATED        2      1      0      0
  SRRM3 WILD-TYPE    176    182    101     20
D2101V3, multiclass
        clus
vv       SRRM3 MUTATED SRRM3 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRRM3 MUTATED        2      0      0
  SRRM3 WILD-TYPE     85     80    100
D2101V4, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              2             265 
     TCGA-A6-2671      TCGA-A6-2677      TCGA-A6-3809      TCGA-A6-3810 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-4105      TCGA-A6-5656      TCGA-A6-5657      TCGA-A6-5659 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662      TCGA-A6-5664 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137      TCGA-A6-6138 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648      TCGA-A6-6649 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653      TCGA-A6-6654 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502      TCGA-AA-3510 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AA-3655      TCGA-AA-3660      TCGA-AA-3662 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3663      TCGA-AA-3697      TCGA-AA-3712      TCGA-AA-3713 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6888      TCGA-AD-6889 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-6890      TCGA-AD-6895      TCGA-AD-6899      TCGA-AD-6901 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687      TCGA-AF-2693 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AG-3742      TCGA-AG-A01W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02N 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A036      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AH-6644      TCGA-AU-3779      TCGA-AU-6004 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197      TCGA-AY-6386 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-4681 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5403      TCGA-AZ-5407      TCGA-AZ-6598 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6599      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-5254      TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-6715      TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CI-6622      TCGA-CI-6624      TCGA-CK-4947      TCGA-CK-4948 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CK-4950      TCGA-CK-4952      TCGA-CK-5912      TCGA-CK-5913 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CK-5914      TCGA-CK-5915      TCGA-CK-5916      TCGA-CK-6746 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5917 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-4752      TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5349      TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5863      TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6162      TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6166      TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6170      TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6675      TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-5538 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-5539      TCGA-D5-5540      TCGA-D5-5541      TCGA-D5-6529 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6532      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6535 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6537      TCGA-D5-6538      TCGA-D5-6539 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6540      TCGA-D5-6541      TCGA-D5-6898      TCGA-D5-6920 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6923      TCGA-D5-6924      TCGA-D5-6926 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6927      TCGA-D5-6928      TCGA-D5-6929      TCGA-D5-6930 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6931      TCGA-D5-6932      TCGA-D5-7000      TCGA-DC-5337 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1D4      TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1HB      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28C 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A28E      TCGA-DM-A28F      TCGA-DM-A28G      TCGA-DM-A28H 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A28K      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G5-6641 
"SRRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRRM3 MUTATED        0      1      1
  SRRM3 WILD-TYPE     89    159    137
D2101V5, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G5-6641 
"SRRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRRM3 MUTATED        1      1      0
  SRRM3 WILD-TYPE    181    132     72
D2101V6, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              2             385 
     TCGA-A6-2671      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-A6-5656      TCGA-A6-5657 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-5659      TCGA-A6-5660      TCGA-A6-5661      TCGA-A6-5662 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-5664      TCGA-A6-5665      TCGA-A6-5666      TCGA-A6-6137 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6138      TCGA-A6-6141      TCGA-A6-6142      TCGA-A6-6648 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6652      TCGA-A6-6653 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6780      TCGA-A6-6781      TCGA-A6-6782 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3489      TCGA-AA-3492      TCGA-AA-3496      TCGA-AA-3502 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3510      TCGA-AA-3511      TCGA-AA-3514      TCGA-AA-3517 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3519      TCGA-AA-3520      TCGA-AA-3521      TCGA-AA-3522 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530      TCGA-AA-3531 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548      TCGA-AA-3552 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555      TCGA-AA-3558 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3655 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3697 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3712      TCGA-AA-3713      TCGA-AA-3715 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3950 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982      TCGA-AA-3986 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02K      TCGA-AA-A02O      TCGA-AA-A02W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AD-5900 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6899      TCGA-AD-6965 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-3400      TCGA-AF-3913      TCGA-AF-5654 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-6136      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3574 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3612      TCGA-AG-3727      TCGA-AG-3731 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3742      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3893      TCGA-AG-3896      TCGA-AG-3898 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-4001      TCGA-AG-4005 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A008 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01W 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A026      TCGA-AG-A02G 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A036      TCGA-AH-6544 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643      TCGA-AH-6644 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AU-6004      TCGA-AY-5543      TCGA-AY-6196      TCGA-AY-6197 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AY-6386      TCGA-AZ-4315      TCGA-AZ-4323      TCGA-AZ-4616 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-4682      TCGA-AZ-5407      TCGA-AZ-6598      TCGA-AZ-6599 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6606      TCGA-AZ-6607      TCGA-AZ-6608      TCGA-CA-5254 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-5255      TCGA-CA-5796      TCGA-CA-5797      TCGA-CA-6715 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-6716      TCGA-CA-6717      TCGA-CA-6718      TCGA-CA-6719 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CK-5914      TCGA-CK-5916      TCGA-CK-6746 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CK-6747      TCGA-CK-6748      TCGA-CK-6751      TCGA-CL-5918 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-4744      TCGA-CM-4746      TCGA-CM-4747      TCGA-CM-4752 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5341      TCGA-CM-5344      TCGA-CM-5348      TCGA-CM-5349 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-5861      TCGA-CM-5862      TCGA-CM-5863 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5864      TCGA-CM-5868      TCGA-CM-6161      TCGA-CM-6162 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6163      TCGA-CM-6164      TCGA-CM-6165      TCGA-CM-6166 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6168      TCGA-CM-6169      TCGA-CM-6170 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6171      TCGA-CM-6172      TCGA-CM-6674      TCGA-CM-6675 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5538      TCGA-D5-5539      TCGA-D5-5540 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-5541      TCGA-D5-6529      TCGA-D5-6532      TCGA-D5-6533 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6534      TCGA-D5-6535      TCGA-D5-6536      TCGA-D5-6537 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6538      TCGA-D5-6539      TCGA-D5-6540      TCGA-D5-6541 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6898      TCGA-D5-6920      TCGA-D5-6922      TCGA-D5-6923 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-D5-6926      TCGA-D5-6927      TCGA-D5-6928 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6930      TCGA-D5-6931      TCGA-D5-6932      TCGA-DC-5337 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6155      TCGA-DC-6157      TCGA-DC-6158 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6160      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A0X9      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D4 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1D6      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1DB      TCGA-DM-A1HA      TCGA-DM-A1HB 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A28C      TCGA-DM-A28E      TCGA-DM-A28F 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A28G      TCGA-DT-5265      TCGA-DY-A0XA      TCGA-DY-A1DC 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DF      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EF-5830      TCGA-EI-6506      TCGA-EI-6507      TCGA-EI-6508 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EI-6510      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6703      TCGA-F4-6704      TCGA-F4-6805 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6806      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6854      TCGA-F4-6855      TCGA-F4-6856      TCGA-F5-6464 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-F5-6813      TCGA-G4-6293      TCGA-G4-6299 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6303      TCGA-G4-6304      TCGA-G4-6306      TCGA-G4-6307 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6310      TCGA-G4-6315      TCGA-G4-6317 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6321      TCGA-G4-6323      TCGA-G4-6586      TCGA-G4-6588 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6626      TCGA-G4-6628      TCGA-G5-6235 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G5-6641 
"SRRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRM3 MUTATED        1      1      0      1
  SRRM3 WILD-TYPE    111     95     92    185
D2101V7, multiclass
        clus
vv       SRRM3 MUTATED SRRM3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRRM3 MUTATED        1      1      1      0      0      0      0
  SRRM3 WILD-TYPE     59     49     48     40     63    125     99
D2101V8, multiclass
        clus
vv       SRRM3 MUTATED SRRM3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRM3 MUTATED        2      0      0      1
  SRRM3 WILD-TYPE    128     78     68    195
D2101V9, multiclass
        clus
vv       SRRM3 MUTATED SRRM3 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SRRM3 MUTATED        0      0      0      0      2      0      1      0
  SRRM3 WILD-TYPE     40     62     28     80     67     48     42     28
                 vv
clus              CLUS_9
  SRRM3 MUTATED        0
  SRRM3 WILD-TYPE     74
D2101V10, multiclass
        clus
vv       SRRM3 MUTATED SRRM3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRM3 MUTATED        1      0      0      0
  SRRM3 WILD-TYPE     32     31     27     19
D2101V11, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G5-6641 
"SRRM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRM3 MUTATED        1      0      0      0
  SRRM3 WILD-TYPE     53     10     24     22
D2101V12, multiclass
[1] "Remove cluster labels:" "SRRM3 MUTATED"         
clus
  SRRM3 MUTATED SRRM3 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" "SRRM3 WILD-TYPE" 
     TCGA-G5-6641 
"SRRM3 WILD-TYPE" 

Clustering(2102) Variable = SFRS12IP1 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS12IP1 MUTATED        0      1      0      1
  SFRS12IP1 WILD-TYPE     46     57     64     42
D2102V1, multiclass
[1] "Remove cluster labels:" "SFRS12IP1 MUTATED"     
clus
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01Q 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02W 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3574 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3575          TCGA-AG-3578          TCGA-AG-3580 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3584          TCGA-AG-3586          TCGA-AG-3587 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3593          TCGA-AG-3594          TCGA-AG-3598 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3600          TCGA-AG-3601 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3602          TCGA-AG-3605          TCGA-AG-3608 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3611          TCGA-AG-3612 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3883 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3885          TCGA-AG-3887          TCGA-AG-3892 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3896 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3898          TCGA-AG-3901          TCGA-AG-3902 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3909          TCGA-AG-3999          TCGA-AG-4001 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A008          TCGA-AG-A00C 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SFRS12IP1 MUTATED        0      1      1
  SFRS12IP1 WILD-TYPE     51     82     76
D2102V2, multiclass
[1] "Remove cluster labels:" "SFRS12IP1 MUTATED"     
clus
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  2                 209 
         TCGA-A6-2672          TCGA-A6-2674          TCGA-A6-2676 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-2677          TCGA-A6-2678          TCGA-A6-2683 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-3807          TCGA-A6-3808          TCGA-A6-3809 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3514          TCGA-AA-3516 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3517          TCGA-AA-3518          TCGA-AA-3519 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3520          TCGA-AA-3521          TCGA-AA-3522 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3524          TCGA-AA-3525          TCGA-AA-3526 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3527          TCGA-AA-3529          TCGA-AA-3530 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3531          TCGA-AA-3532          TCGA-AA-3534 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3538          TCGA-AA-3542          TCGA-AA-3543 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3544          TCGA-AA-3548          TCGA-AA-3549 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3552          TCGA-AA-3553          TCGA-AA-3554 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3556          TCGA-AA-3558 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3560          TCGA-AA-3561          TCGA-AA-3562 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3664          TCGA-AA-3666          TCGA-AA-3667 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3672          TCGA-AA-3673          TCGA-AA-3678 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3680          TCGA-AA-3681 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3684          TCGA-AA-3685          TCGA-AA-3688 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3692          TCGA-AA-3693          TCGA-AA-3696 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3710          TCGA-AA-3715          TCGA-AA-3811 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3812          TCGA-AA-3814          TCGA-AA-3815 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3818          TCGA-AA-3819          TCGA-AA-3821 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3831          TCGA-AA-3833          TCGA-AA-3837 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3842          TCGA-AA-3844          TCGA-AA-3845 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3850 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3851          TCGA-AA-3852          TCGA-AA-3854 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3855          TCGA-AA-3856          TCGA-AA-3858 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3860          TCGA-AA-3861          TCGA-AA-3864 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3866          TCGA-AA-3867          TCGA-AA-3869 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3870          TCGA-AA-3872          TCGA-AA-3875 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3930          TCGA-AA-3939 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3941          TCGA-AA-3947          TCGA-AA-3949 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3950          TCGA-AA-3952          TCGA-AA-3955 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3956          TCGA-AA-3966          TCGA-AA-3968 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3971          TCGA-AA-3972          TCGA-AA-3973 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3976          TCGA-AA-3977 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3979          TCGA-AA-3980          TCGA-AA-3982 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3984          TCGA-AA-3986          TCGA-AA-3989 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3994          TCGA-AA-A004          TCGA-AA-A00A 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01Q 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02W 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3574 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3575          TCGA-AG-3578          TCGA-AG-3580 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3584          TCGA-AG-3586          TCGA-AG-3587 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3593          TCGA-AG-3594          TCGA-AG-3598 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3600          TCGA-AG-3601 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3602          TCGA-AG-3605          TCGA-AG-3608 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3609          TCGA-AG-3611          TCGA-AG-3612 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3881          TCGA-AG-3882          TCGA-AG-3883 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3885          TCGA-AG-3887          TCGA-AG-3892 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3896 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3898          TCGA-AG-3901          TCGA-AG-3902 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3909          TCGA-AG-3999          TCGA-AG-4001 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-4005          TCGA-AG-4007          TCGA-AG-4008 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-4015          TCGA-AG-A008          TCGA-AG-A00C 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A025          TCGA-AG-A026 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02X          TCGA-AG-A032 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AY-4070          TCGA-AY-4071 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS12IP1 MUTATED        4      0      0      1
  SFRS12IP1 WILD-TYPE    174    183    101     19
D2102V3, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 4                 174
  CLUS_2                 0                 183
  CLUS_3                 0                 101
  CLUS_4                 1                  19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SFRS12IP1 MUTATED        1      1      1
  SFRS12IP1 WILD-TYPE     86     79     99
D2102V4, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 1                  86
  CLUS_2                 1                  79
  CLUS_3                 1                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SFRS12IP1 MUTATED        0      2      1
  SFRS12IP1 WILD-TYPE     89    158    137
D2102V5, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 0                  89
  CLUS_2                 2                 158
  CLUS_3                 1                 137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SFRS12IP1 MUTATED        1      1      1
  SFRS12IP1 WILD-TYPE    181    132     71
D2102V6, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 1                 181
  CLUS_2                 1                 132
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS12IP1 MUTATED        1      1      1      2
  SFRS12IP1 WILD-TYPE    111     95     91    184
D2102V7, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 1                 111
  CLUS_2                 1                  95
  CLUS_3                 1                  91
  CLUS_4                 2                 184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFRS12IP1 MUTATED        1      1      2      0      0      1      0
  SFRS12IP1 WILD-TYPE     59     49     47     40     63    124     99
D2102V8, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 1                  59
  CLUS_2                 1                  49
  CLUS_3                 2                  47
  CLUS_4                 0                  40
  CLUS_5                 0                  63
  CLUS_6                 1                 124
  CLUS_7                 0                  99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS12IP1 MUTATED        3      0      0      2
  SFRS12IP1 WILD-TYPE    127     78     68    194
D2102V9, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 3                 127
  CLUS_2                 0                  78
  CLUS_3                 0                  68
  CLUS_4                 2                 194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SFRS12IP1 MUTATED        1      0      0      0      2      0      1      0
  SFRS12IP1 WILD-TYPE     39     62     28     80     67     48     42     28
                     vv
clus                  CLUS_9
  SFRS12IP1 MUTATED        1
  SFRS12IP1 WILD-TYPE     73
D2102V10, multiclass
        clus
vv       SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE
  CLUS_1                 1                  39
  CLUS_2                 0                  62
  CLUS_3                 0                  28
  CLUS_4                 0                  80
  CLUS_5                 2                  67
  CLUS_6                 0                  48
  CLUS_7                 1                  42
  CLUS_8                 0                  28
  CLUS_9                 1                  73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS12IP1 MUTATED        0      0      0      2
  SFRS12IP1 WILD-TYPE     33     31     27     17
D2102V11, multiclass
[1] "Remove cluster labels:" "SFRS12IP1 MUTATED"     
clus
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6600 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AZ-6607          TCGA-CA-6718          TCGA-CA-6719 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-5916          TCGA-CK-6748 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-5860          TCGA-CM-6167 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CM-6674          TCGA-CM-6676          TCGA-CM-6677 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-6533          TCGA-D5-6534 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6922          TCGA-D5-6924 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6157 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6681          TCGA-DC-6682 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0XD          TCGA-DM-A0XF 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D7          TCGA-DM-A1D8 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1HA 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DM-A282          TCGA-DM-A285          TCGA-DM-A28F 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DG 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EI-6506          TCGA-EI-6507 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6704          TCGA-F4-6805 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F4-6807          TCGA-F4-6808          TCGA-F4-6809 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F5-6464          TCGA-F5-6465          TCGA-F5-6571 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F5-6702          TCGA-F5-6811          TCGA-F5-6812 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-G4-6299          TCGA-G4-6303          TCGA-G4-6306 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G5-6235          TCGA-G5-6641 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS12IP1 MUTATED        1      0      1      0
  SFRS12IP1 WILD-TYPE     53     10     23     22
D2102V12, multiclass
[1] "Remove cluster labels:" "SFRS12IP1 MUTATED"     
clus
  SFRS12IP1 MUTATED SFRS12IP1 WILD-TYPE 
                  2                 108 
         TCGA-A6-5657          TCGA-A6-6137          TCGA-A6-6138 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-6141          TCGA-A6-6142          TCGA-A6-6649 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-6651          TCGA-A6-6653          TCGA-A6-6654 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-A6-6781          TCGA-A6-6782          TCGA-AA-3489 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AA-3511          TCGA-AD-5900          TCGA-AD-6548 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AD-6889          TCGA-AD-6901          TCGA-AD-6963 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AD-6964          TCGA-AD-6965          TCGA-AF-2687 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AF-4110          TCGA-AF-6655          TCGA-AF-6672 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AG-3731          TCGA-AG-3732          TCGA-AH-6544 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AH-6547          TCGA-AH-6549          TCGA-AH-6643 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AY-6196          TCGA-AZ-4323          TCGA-AZ-4616 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AZ-5403          TCGA-AZ-6598          TCGA-AZ-6600 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AZ-6601          TCGA-AZ-6603          TCGA-AZ-6605 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-AZ-6607          TCGA-CA-6718          TCGA-CA-6719 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CI-6619          TCGA-CI-6620          TCGA-CI-6621 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CI-6624          TCGA-CK-5916          TCGA-CK-6748 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CL-5918          TCGA-CM-5860          TCGA-CM-6167 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CM-6674          TCGA-CM-6676          TCGA-CM-6677 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-CM-6678          TCGA-CM-6679          TCGA-CM-6680 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D5-5537          TCGA-D5-6533          TCGA-D5-6534 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-D5-6536          TCGA-D5-6922          TCGA-D5-6924 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DC-5337          TCGA-DC-5869          TCGA-DC-6157 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DC-6158          TCGA-DC-6681          TCGA-DC-6682 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DC-6683          TCGA-DM-A0XD          TCGA-DM-A0XF 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DM-A1D0          TCGA-DM-A1D7          TCGA-DM-A1D8 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DM-A1D9          TCGA-DM-A1DA          TCGA-DM-A1HA 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DM-A282          TCGA-DM-A285          TCGA-DM-A28F 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DY-A1DC          TCGA-DY-A1DD          TCGA-DY-A1DG 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-DY-A1H8          TCGA-EI-6506          TCGA-EI-6507 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F4-6459          TCGA-F4-6460          TCGA-F4-6569 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F4-6570          TCGA-F4-6704          TCGA-F4-6805 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F4-6807          TCGA-F4-6808          TCGA-F4-6809 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F5-6464          TCGA-F5-6465          TCGA-F5-6571 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-F5-6702          TCGA-F5-6811          TCGA-F5-6812 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-G4-6299          TCGA-G4-6303          TCGA-G4-6306 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 
         TCGA-G4-6625          TCGA-G5-6235          TCGA-G5-6641 
"SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" "SFRS12IP1 WILD-TYPE" 

Clustering(2103) Variable = SBF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        2      0      0      1
  SBF1 WILD-TYPE     44     58     64     42
D2103V1, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED        2      0      1
  SBF1 WILD-TYPE     49     83     76
D2103V2, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED       13      1      0      1
  SBF1 WILD-TYPE    165    182    101     19
D2103V3, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1           13            165
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED        5      0      7
  SBF1 WILD-TYPE     82     80     93
D2103V4, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            5             82
  CLUS_2            0             80
  CLUS_3            7             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED        2      6      5
  SBF1 WILD-TYPE     87    154    133
D2103V5, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            154
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED        6      5      2
  SBF1 WILD-TYPE    176    128     70
D2103V6, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        2      5      5      4
  SBF1 WILD-TYPE    110     91     87    182
D2103V7, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            5             91
  CLUS_3            5             87
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SBF1 MUTATED        3      1      9      0      0      0      3
  SBF1 WILD-TYPE     57     49     40     40     63    125     96
D2103V8, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            9             40
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        6      3      0      7
  SBF1 WILD-TYPE    124     75     68    189
D2103V9, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            6            124
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SBF1 MUTATED        1      3      0      3      6      1      0      1      1
  SBF1 WILD-TYPE     39     59     28     77     63     47     43     27     73
D2103V10, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            1             47
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        2      0      0      2
  SBF1 WILD-TYPE     31     31     27     17
D2103V11, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        1      0      2      1
  SBF1 WILD-TYPE     53     10     22     21
D2103V12, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            2             22
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2104) Variable = MYST3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST3 MUTATED        4      0      1      5
  MYST3 WILD-TYPE     42     58     63     38
D2104V1, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             5              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST3 MUTATED        7      1      2
  MYST3 WILD-TYPE     44     82     75
D2104V2, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             7              44
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST3 MUTATED       21      5      0      1
  MYST3 WILD-TYPE    157    178    101     19
D2104V3, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1            21             157
  CLUS_2             5             178
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST3 MUTATED        6      4      7
  MYST3 WILD-TYPE     81     76     93
D2104V4, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST3 MUTATED        3     11     10
  MYST3 WILD-TYPE     86    149    128
D2104V5, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2            11             149
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYST3 MUTATED       11     12      1
  MYST3 WILD-TYPE    171    121     71
D2104V6, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1            11             171
  CLUS_2            12             121
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST3 MUTATED        5     10      3      9
  MYST3 WILD-TYPE    107     86     89    177
D2104V7, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             5             107
  CLUS_2            10              86
  CLUS_3             3              89
  CLUS_4             9             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYST3 MUTATED        2      1      7      3      4      1      9
  MYST3 WILD-TYPE     58     49     42     37     59    124     90
D2104V8, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             7              42
  CLUS_4             3              37
  CLUS_5             4              59
  CLUS_6             1             124
  CLUS_7             9              90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST3 MUTATED        9      4      2      9
  MYST3 WILD-TYPE    121     74     66    187
D2104V9, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             9             121
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MYST3 MUTATED        1      4      1      0     11      2      2      1
  MYST3 WILD-TYPE     39     58     27     80     58     46     41     27
                 vv
clus              CLUS_9
  MYST3 MUTATED        2
  MYST3 WILD-TYPE     72
D2104V10, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5            11              58
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST3 MUTATED        1      3      0      2
  MYST3 WILD-TYPE     32     28     27     17
D2104V11, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYST3 MUTATED        2      2      2      0
  MYST3 WILD-TYPE     52      8     22     22
D2104V12, multiclass
        clus
vv       MYST3 MUTATED MYST3 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             2               8
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2105) Variable = ZNF846 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF846 MUTATED        2      0      0      3
  ZNF846 WILD-TYPE     44     58     64     40
D2105V1, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF846 MUTATED        1      2      2
  ZNF846 WILD-TYPE     50     81     75
D2105V2, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF846 MUTATED       10      0      0      0
  ZNF846 WILD-TYPE    168    183    101     20
D2105V3, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF846 MUTATED        4      0      1
  ZNF846 WILD-TYPE     83     80     99
D2105V4, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF846 MUTATED        1      3      3
  ZNF846 WILD-TYPE     88    157    135
D2105V5, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF846 MUTATED        1      5      1
  ZNF846 WILD-TYPE    181    128     71
D2105V6, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              5              128
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF846 MUTATED        0      3      1      6
  ZNF846 WILD-TYPE    112     93     91    180
D2105V7, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF846 MUTATED        1      2      1      0      1      1      4
  ZNF846 WILD-TYPE     59     48     48     40     62    124     95
D2105V8, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF846 MUTATED        1      2      0      7
  ZNF846 WILD-TYPE    129     76     68    189
D2105V9, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF846 MUTATED        1      1      2      1      3      0      0      0
  ZNF846 WILD-TYPE     39     61     26     79     66     48     43     28
                  vv
clus               CLUS_9
  ZNF846 MUTATED        2
  ZNF846 WILD-TYPE     72
D2105V10, multiclass
        clus
vv       ZNF846 MUTATED ZNF846 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF846 MUTATED        1      0      0      0
  ZNF846 WILD-TYPE     32     31     27     19
D2105V11, multiclass
[1] "Remove cluster labels:" "ZNF846 MUTATED"        
clus
  ZNF846 MUTATED ZNF846 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF846 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF846 MUTATED        1      0      0      0
  ZNF846 WILD-TYPE     53     10     24     22
D2105V12, multiclass
[1] "Remove cluster labels:" "ZNF846 MUTATED"        
clus
  ZNF846 MUTATED ZNF846 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6142 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653       TCGA-A6-6654 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" "ZNF846 WILD-TYPE" 
      TCGA-G5-6641 
"ZNF846 WILD-TYPE" 

Clustering(2106) Variable = TEX11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX11 MUTATED        2      0      2      3
  TEX11 WILD-TYPE     44     58     62     40
D2106V1, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX11 MUTATED        3      1      3
  TEX11 WILD-TYPE     48     82     74
D2106V2, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX11 MUTATED       12      7      2      0
  TEX11 WILD-TYPE    166    176     99     20
D2106V3, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             7             176
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX11 MUTATED        2      4      8
  TEX11 WILD-TYPE     85     76     92
D2106V4, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             4              76
  CLUS_3             8              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX11 MUTATED        1      7      8
  TEX11 WILD-TYPE     88    153    130
D2106V5, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             153
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX11 MUTATED        7      9      0
  TEX11 WILD-TYPE    175    124     72
D2106V6, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             9             124
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX11 MUTATED        6      6      2      7
  TEX11 WILD-TYPE    106     90     90    179
D2106V7, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             6              90
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEX11 MUTATED        5      1      6      2      1      1      5
  TEX11 WILD-TYPE     55     49     43     38     62    124     94
D2106V8, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             5              55
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX11 MUTATED       12      2      1      5
  TEX11 WILD-TYPE    118     76     67    191
D2106V9, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1            12             118
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TEX11 MUTATED        3      1      3      4      7      0      0      1
  TEX11 WILD-TYPE     37     61     25     76     62     48     43     27
                 vv
clus              CLUS_9
  TEX11 MUTATED        1
  TEX11 WILD-TYPE     73
D2106V10, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             3              25
  CLUS_4             4              76
  CLUS_5             7              62
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX11 MUTATED        1      1      1      1
  TEX11 WILD-TYPE     32     30     26     18
D2106V11, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX11 MUTATED        1      1      2      0
  TEX11 WILD-TYPE     53      9     22     22
D2106V12, multiclass
        clus
vv       TEX11 MUTATED TEX11 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2107) Variable = ZP3 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP3 MUTATED        0      1      1      1
  ZP3 WILD-TYPE     46     57     63     42
D2107V1, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           0            46
  CLUS_2           1            57
  CLUS_3           1            63
  CLUS_4           1            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP3 MUTATED        0      2      1
  ZP3 WILD-TYPE     51     81     76
D2107V2, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           0            51
  CLUS_2           2            81
  CLUS_3           1            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP3 MUTATED        3      3      1      0
  ZP3 WILD-TYPE    175    180    100     20
D2107V3, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           3           175
  CLUS_2           3           180
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP3 MUTATED        0      1      3
  ZP3 WILD-TYPE     87     79     97
D2107V4, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           0            87
  CLUS_2           1            79
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP3 MUTATED        2      4      1
  ZP3 WILD-TYPE     87    156    137
D2107V5, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           2            87
  CLUS_2           4           156
  CLUS_3           1           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ZP3 MUTATED        3      3      1
  ZP3 WILD-TYPE    179    130     71
D2107V6, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           3           179
  CLUS_2           3           130
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP3 MUTATED        1      1      2      3
  ZP3 WILD-TYPE    111     95     90    183
D2107V7, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           1           111
  CLUS_2           1            95
  CLUS_3           2            90
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZP3 MUTATED        0      0      2      0      2      2      1
  ZP3 WILD-TYPE     60     50     47     40     61    123     98
D2107V8, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           0            60
  CLUS_2           0            50
  CLUS_3           2            47
  CLUS_4           0            40
  CLUS_5           2            61
  CLUS_6           2           123
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP3 MUTATED        2      1      0      4
  ZP3 WILD-TYPE    128     77     68    192
D2107V9, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           2           128
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           4           192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZP3 MUTATED        1      1      2      0      1      1      0      0      1
  ZP3 WILD-TYPE     39     61     26     80     68     47     43     28     73
D2107V10, multiclass
        clus
vv       ZP3 MUTATED ZP3 WILD-TYPE
  CLUS_1           1            39
  CLUS_2           1            61
  CLUS_3           2            26
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           1            47
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP3 MUTATED        1      0      0      0
  ZP3 WILD-TYPE     32     31     27     19
D2107V11, multiclass
[1] "Remove cluster labels:" "ZP3 MUTATED"           
clus
  ZP3 MUTATED ZP3 WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZP3 MUTATED        1      0      0      0
  ZP3 WILD-TYPE     53     10     24     22
D2107V12, multiclass
[1] "Remove cluster labels:" "ZP3 MUTATED"           
clus
  ZP3 MUTATED ZP3 WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" "ZP3 WILD-TYPE" 

Clustering(2108) Variable = GLI4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI4 MUTATED        0      0      0      1
  GLI4 WILD-TYPE     46     58     64     42
D2108V1, multiclass
[1] "Remove cluster labels:" "GLI4 MUTATED"          
clus
  GLI4 MUTATED GLI4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI4 MUTATED        0      0      1
  GLI4 WILD-TYPE     51     83     76
D2108V2, multiclass
[1] "Remove cluster labels:" "GLI4 MUTATED"          
clus
  GLI4 MUTATED GLI4 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI4 MUTATED        4      1      0      0
  GLI4 WILD-TYPE    174    182    101     20
D2108V3, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI4 MUTATED        1      0      3
  GLI4 WILD-TYPE     86     80     97
D2108V4, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI4 MUTATED        1      2      2
  GLI4 WILD-TYPE     88    158    136
D2108V5, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            2            158
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI4 MUTATED        3      2      0
  GLI4 WILD-TYPE    179    131     72
D2108V6, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            2            131
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI4 MUTATED        0      2      2      1
  GLI4 WILD-TYPE    112     94     90    185
D2108V7, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLI4 MUTATED        1      0      2      0      1      1      0
  GLI4 WILD-TYPE     59     50     47     40     62    124     99
D2108V8, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI4 MUTATED        2      1      1      0
  GLI4 WILD-TYPE    128     77     67    196
D2108V9, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            0            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  GLI4 MUTATED        1      1      0      1      0      0      1      0      0
  GLI4 WILD-TYPE     39     61     28     79     69     48     42     28     74
D2108V10, multiclass
        clus
vv       GLI4 MUTATED GLI4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI4 MUTATED        0      1      1      0
  GLI4 WILD-TYPE     33     30     26     19
D2108V11, multiclass
[1] "Remove cluster labels:" "GLI4 MUTATED"          
clus
  GLI4 MUTATED GLI4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI4 MUTATED        1      0      1      0
  GLI4 WILD-TYPE     53     10     23     22
D2108V12, multiclass
[1] "Remove cluster labels:" "GLI4 MUTATED"          
clus
  GLI4 MUTATED GLI4 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489     TCGA-AA-3511 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889     TCGA-AD-6901 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-5403 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AZ-6598     TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6718     TCGA-CA-6719 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" "GLI4 WILD-TYPE" 

Clustering(2109) Variable = SORBS1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS1 MUTATED        3      0      1      3
  SORBS1 WILD-TYPE     43     58     63     40
D2109V1, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS1 MUTATED        4      2      1
  SORBS1 WILD-TYPE     47     81     76
D2109V2, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS1 MUTATED       10      1      0      1
  SORBS1 WILD-TYPE    168    182    101     19
D2109V3, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS1 MUTATED        1      1      3
  SORBS1 WILD-TYPE     86     79     97
D2109V4, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS1 MUTATED        1      7      2
  SORBS1 WILD-TYPE     88    153    136
D2109V5, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              7              153
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS1 MUTATED        2      6      2
  SORBS1 WILD-TYPE    180    127     70
D2109V6, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS1 MUTATED        1      4      0      7
  SORBS1 WILD-TYPE    111     92     92    179
D2109V7, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              0               92
  CLUS_4              7              179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SORBS1 MUTATED        2      1      2      0      0      1      6
  SORBS1 WILD-TYPE     58     49     47     40     63    124     93
D2109V8, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS1 MUTATED        3      0      0      9
  SORBS1 WILD-TYPE    127     78     68    187
D2109V9, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SORBS1 MUTATED        1      0      1      0      7      1      0      0
  SORBS1 WILD-TYPE     39     62     27     80     62     47     43     28
                  vv
clus               CLUS_9
  SORBS1 MUTATED        2
  SORBS1 WILD-TYPE     72
D2109V10, multiclass
        clus
vv       SORBS1 MUTATED SORBS1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              7               62
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS1 MUTATED        0      0      0      1
  SORBS1 WILD-TYPE     33     31     27     18
D2109V11, multiclass
[1] "Remove cluster labels:" "SORBS1 MUTATED"        
clus
  SORBS1 MUTATED SORBS1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-G5-6641 
"SORBS1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS1 MUTATED        0      0      1      0
  SORBS1 WILD-TYPE     54     10     23     22
D2109V12, multiclass
[1] "Remove cluster labels:" "SORBS1 MUTATED"        
clus
  SORBS1 MUTATED SORBS1 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6901 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" "SORBS1 WILD-TYPE" 
      TCGA-G5-6641 
"SORBS1 WILD-TYPE" 

Clustering(2110) Variable = ITGA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2 MUTATED        0      0      1      3
  ITGA2 WILD-TYPE     46     58     63     40
D2110V1, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA2 MUTATED        1      2      1
  ITGA2 WILD-TYPE     50     81     76
D2110V2, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2 MUTATED        7      1      1      0
  ITGA2 WILD-TYPE    171    182    100     20
D2110V3, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA2 MUTATED        2      0      3
  ITGA2 WILD-TYPE     85     80     97
D2110V4, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA2 MUTATED        1      6      1
  ITGA2 WILD-TYPE     88    154    137
D2110V5, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             6             154
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA2 MUTATED        2      4      2
  ITGA2 WILD-TYPE    180    129     70
D2110V6, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2 MUTATED        0      3      1      5
  ITGA2 WILD-TYPE    112     93     91    181
D2110V7, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ITGA2 MUTATED        1      0      3      0      1      1      3
  ITGA2 WILD-TYPE     59     50     46     40     62    124     96
D2110V8, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2 MUTATED        3      1      0      5
  ITGA2 WILD-TYPE    127     77     68    191
D2110V9, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ITGA2 MUTATED        2      1      2      0      2      0      0      0
  ITGA2 WILD-TYPE     38     61     26     80     67     48     43     28
                 vv
clus              CLUS_9
  ITGA2 MUTATED        2
  ITGA2 WILD-TYPE     72
D2110V10, multiclass
        clus
vv       ITGA2 MUTATED ITGA2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2 MUTATED        0      0      0      0
  ITGA2 WILD-TYPE     33     31     27     19
D2110V11, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA2 MUTATED        0      0      0      0
  ITGA2 WILD-TYPE     54     10     24     22
D2110V12, multiclass

Clustering(2111) Variable = PRSS27 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        0      0      0      1
  PRSS27 WILD-TYPE     46     58     64     42
D2111V1, multiclass
[1] "Remove cluster labels:" "PRSS27 MUTATED"        
clus
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS27 MUTATED        0      1      0
  PRSS27 WILD-TYPE     51     82     77
D2111V2, multiclass
[1] "Remove cluster labels:" "PRSS27 MUTATED"        
clus
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        3      1      0      0
  PRSS27 WILD-TYPE    175    182    101     20
D2111V3, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS27 MUTATED        0      1      2
  PRSS27 WILD-TYPE     87     79     98
D2111V4, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              0               87
  CLUS_2              1               79
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS27 MUTATED        1      1      1
  PRSS27 WILD-TYPE     88    159    137
D2111V5, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              1              137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS27 MUTATED        2      1      0
  PRSS27 WILD-TYPE    180    132     72
D2111V6, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              2              180
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        0      2      0      2
  PRSS27 WILD-TYPE    112     94     92    184
D2111V7, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRSS27 MUTATED        0      1      1      0      0      1      1
  PRSS27 WILD-TYPE     60     49     48     40     63    124     98
D2111V8, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        1      1      0      2
  PRSS27 WILD-TYPE    129     77     68    194
D2111V9, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRSS27 MUTATED        0      0      1      1      1      0      0      1
  PRSS27 WILD-TYPE     40     62     27     79     68     48     43     27
                  vv
clus               CLUS_9
  PRSS27 MUTATED        0
  PRSS27 WILD-TYPE     74
D2111V10, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        0      0      1      1
  PRSS27 WILD-TYPE     33     31     26     18
D2111V11, multiclass
[1] "Remove cluster labels:" "PRSS27 MUTATED"        
clus
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6621       TCGA-CI-6624 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        0      0      1      1
  PRSS27 WILD-TYPE     54     10     23     21
D2111V12, multiclass
[1] "Remove cluster labels:" "PRSS27 MUTATED"        
clus
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6654 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489       TCGA-AA-3511 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6718 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6621       TCGA-CI-6624 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" "PRSS27 WILD-TYPE" 

Clustering(2112) Variable = GLT25D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT25D1 MUTATED        1      0      1      0
  GLT25D1 WILD-TYPE     45     58     63     43
D2112V1, multiclass
[1] "Remove cluster labels:" "GLT25D1 MUTATED"       
clus
  GLT25D1 MUTATED GLT25D1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AY-4071 
"GLT25D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLT25D1 MUTATED        1      1      0
  GLT25D1 WILD-TYPE     50     82     77
D2112V2, multiclass
[1] "Remove cluster labels:" "GLT25D1 MUTATED"       
clus
  GLT25D1 MUTATED GLT25D1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818        TCGA-AA-3819 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AY-4071 
"GLT25D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT25D1 MUTATED        8      1      0      0
  GLT25D1 WILD-TYPE    170    182    101     20
D2112V3, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLT25D1 MUTATED        3      0      3
  GLT25D1 WILD-TYPE     84     80     97
D2112V4, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLT25D1 MUTATED        1      1      6
  GLT25D1 WILD-TYPE     88    159    132
D2112V5, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               1               159
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLT25D1 MUTATED        5      1      2
  GLT25D1 WILD-TYPE    177    132     70
D2112V6, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               1               132
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT25D1 MUTATED        1      2      4      2
  GLT25D1 WILD-TYPE    111     94     88    184
D2112V7, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               4                88
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLT25D1 MUTATED        0      2      4      0      0      1      2
  GLT25D1 WILD-TYPE     60     48     45     40     63    124     97
D2112V8, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT25D1 MUTATED        4      2      0      3
  GLT25D1 WILD-TYPE    126     76     68    193
D2112V9, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GLT25D1 MUTATED        0      3      1      0      4      0      0      0
  GLT25D1 WILD-TYPE     40     59     27     80     65     48     43     28
                   vv
clus                CLUS_9
  GLT25D1 MUTATED        1
  GLT25D1 WILD-TYPE     73
D2112V10, multiclass
        clus
vv       GLT25D1 MUTATED GLT25D1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               4                65
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT25D1 MUTATED        0      0      0      1
  GLT25D1 WILD-TYPE     33     31     27     18
D2112V11, multiclass
[1] "Remove cluster labels:" "GLT25D1 MUTATED"       
clus
  GLT25D1 MUTATED GLT25D1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-G5-6641 
"GLT25D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT25D1 MUTATED        1      0      0      0
  GLT25D1 WILD-TYPE     53     10     24     22
D2112V12, multiclass
[1] "Remove cluster labels:" "GLT25D1 MUTATED"       
clus
  GLT25D1 MUTATED GLT25D1 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" "GLT25D1 WILD-TYPE" 
       TCGA-G5-6641 
"GLT25D1 WILD-TYPE" 

Clustering(2113) Variable = FAM167B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167B MUTATED        1      0      0      0
  FAM167B WILD-TYPE     45     58     64     43
D2113V1, multiclass
[1] "Remove cluster labels:" "FAM167B MUTATED"       
clus
  FAM167B MUTATED FAM167B WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM167B MUTATED        0      1      0
  FAM167B WILD-TYPE     51     82     77
D2113V2, multiclass
[1] "Remove cluster labels:" "FAM167B MUTATED"       
clus
  FAM167B MUTATED FAM167B WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3950        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3986 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167B MUTATED        2      1      1      0
  FAM167B WILD-TYPE    176    182    100     20
D2113V3, multiclass
        clus
vv       FAM167B MUTATED FAM167B WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1               182
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM167B MUTATED        0      1      2
  FAM167B WILD-TYPE     87     79     98
D2113V4, multiclass
        clus
vv       FAM167B MUTATED FAM167B WILD-TYPE
  CLUS_1               0                87
  CLUS_2               1                79
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM167B MUTATED        0      1      1
  FAM167B WILD-TYPE     89    159    137
D2113V5, multiclass
[1] "Remove cluster labels:" "FAM167B MUTATED"       
clus
  FAM167B MUTATED FAM167B WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517        TCGA-AA-3519 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3525 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552        TCGA-AA-3553 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3558        TCGA-AA-3560 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655        TCGA-AA-3664 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681        TCGA-AA-3688 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697        TCGA-AA-3710 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715        TCGA-AA-3811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848        TCGA-AA-3850 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856        TCGA-AA-3861 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3955 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AD-6889        TCGA-AD-6899        TCGA-AD-6965        TCGA-AF-2689 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-5654        TCGA-AF-6136 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3578 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3742 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3885 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-5540        TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6537        TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6541        TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6923        TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6928        TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D8        TCGA-DM-A1D9 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G5-6641 
"FAM167B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM167B MUTATED        0      2      0
  FAM167B WILD-TYPE    182    131     72
D2113V6, multiclass
[1] "Remove cluster labels:" "FAM167B MUTATED"       
clus
  FAM167B MUTATED FAM167B WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517        TCGA-AA-3519 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3525 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552        TCGA-AA-3553 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3558        TCGA-AA-3560 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655        TCGA-AA-3664 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681        TCGA-AA-3688 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697        TCGA-AA-3710 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715        TCGA-AA-3811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848        TCGA-AA-3850 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856        TCGA-AA-3861 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950        TCGA-AA-3955 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986        TCGA-AA-3989 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E        TCGA-AA-A00F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022        TCGA-AA-A024 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900        TCGA-AD-6548 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AD-6889        TCGA-AD-6899        TCGA-AD-6965        TCGA-AF-2689 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-5654        TCGA-AF-6136 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574        TCGA-AG-3578 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3609 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3731        TCGA-AG-3742 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3885 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-5540        TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6537        TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6541        TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6923        TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6928        TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D8        TCGA-DM-A1D9 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G5-6641 
"FAM167B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167B MUTATED        1      2      0      1
  FAM167B WILD-TYPE    111     94     92    185
D2113V7, multiclass
        clus
vv       FAM167B MUTATED FAM167B WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                94
  CLUS_3               0                92
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM167B MUTATED        0      2      1      0      0      1      0
  FAM167B WILD-TYPE     60     48     48     40     63    124     99
D2113V8, multiclass
        clus
vv       FAM167B MUTATED FAM167B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               2                48
  CLUS_3               1                48
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               0                99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167B MUTATED        1      0      1      2
  FAM167B WILD-TYPE    129     78     67    194
D2113V9, multiclass
        clus
vv       FAM167B MUTATED FAM167B WILD-TYPE
  CLUS_1               1               129
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM167B MUTATED        0      0      0      2      1      0      1      0
  FAM167B WILD-TYPE     40     62     28     78     68     48     42     28
                   vv
clus                CLUS_9
  FAM167B MUTATED        0
  FAM167B WILD-TYPE     74
D2113V10, multiclass
        clus
vv       FAM167B MUTATED FAM167B WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               2                78
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167B MUTATED        1      0      0      0
  FAM167B WILD-TYPE     32     31     27     19
D2113V11, multiclass
[1] "Remove cluster labels:" "FAM167B MUTATED"       
clus
  FAM167B MUTATED FAM167B WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G5-6641 
"FAM167B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167B MUTATED        0      0      0      1
  FAM167B WILD-TYPE     54     10     24     21
D2113V12, multiclass
[1] "Remove cluster labels:" "FAM167B MUTATED"       
clus
  FAM167B MUTATED FAM167B WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" "FAM167B WILD-TYPE" 
       TCGA-G5-6641 
"FAM167B WILD-TYPE" 

Clustering(2114) Variable = OR5AN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AN1 MUTATED        0      1      0      0
  OR5AN1 WILD-TYPE     46     57     64     43
D2114V1, multiclass
[1] "Remove cluster labels:" "OR5AN1 MUTATED"        
clus
  OR5AN1 MUTATED OR5AN1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3696 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AN1 MUTATED        0      1      0
  OR5AN1 WILD-TYPE     51     82     77
D2114V2, multiclass
[1] "Remove cluster labels:" "OR5AN1 MUTATED"        
clus
  OR5AN1 MUTATED OR5AN1 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3696 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR5AN1 WILD-TYPE" "OR5AN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AN1 MUTATED        3      2      0      1
  OR5AN1 WILD-TYPE    175    181    101     19
D2114V3, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              3              175
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AN1 MUTATED        3      0      2
  OR5AN1 WILD-TYPE     84     80     98
D2114V4, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AN1 MUTATED        0      1      2
  OR5AN1 WILD-TYPE     89    159    136
D2114V5, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              1              159
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR5AN1 MUTATED        1      2      0
  OR5AN1 WILD-TYPE    181    131     72
D2114V6, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              1              181
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AN1 MUTATED        2      3      1      0
  OR5AN1 WILD-TYPE    110     93     91    186
D2114V7, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              3               93
  CLUS_3              1               91
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5AN1 MUTATED        0      2      2      1      0      1      0
  OR5AN1 WILD-TYPE     60     48     47     39     63    124     99
D2114V8, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AN1 MUTATED        3      1      1      1
  OR5AN1 WILD-TYPE    127     77     67    195
D2114V9, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5AN1 MUTATED        0      2      0      2      1      0      0      0
  OR5AN1 WILD-TYPE     40     60     28     78     68     48     43     28
                  vv
clus               CLUS_9
  OR5AN1 MUTATED        1
  OR5AN1 WILD-TYPE     73
D2114V10, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AN1 MUTATED        0      0      2      1
  OR5AN1 WILD-TYPE     33     31     25     18
D2114V11, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5AN1 MUTATED        1      0      1      1
  OR5AN1 WILD-TYPE     53     10     23     21
D2114V12, multiclass
        clus
vv       OR5AN1 MUTATED OR5AN1 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2115) Variable = SETD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD7 MUTATED        1      0      0      2
  SETD7 WILD-TYPE     45     58     64     41
D2115V1, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD7 MUTATED        1      0      2
  SETD7 WILD-TYPE     50     83     75
D2115V2, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD7 MUTATED        8      0      1      0
  SETD7 WILD-TYPE    170    183    100     20
D2115V3, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD7 MUTATED        4      0      2
  SETD7 WILD-TYPE     83     80     98
D2115V4, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD7 MUTATED        0      2      3
  SETD7 WILD-TYPE     89    158    135
D2115V5, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD7 MUTATED        2      3      0
  SETD7 WILD-TYPE    180    130     72
D2115V6, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD7 MUTATED        0      3      3      2
  SETD7 WILD-TYPE    112     93     89    184
D2115V7, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SETD7 MUTATED        1      1      5      0      0      0      1
  SETD7 WILD-TYPE     59     49     44     40     63    125     98
D2115V8, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD7 MUTATED        2      2      0      5
  SETD7 WILD-TYPE    128     76     68    191
D2115V9, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SETD7 MUTATED        0      1      0      1      4      0      0      1
  SETD7 WILD-TYPE     40     61     28     79     65     48     43     27
                 vv
clus              CLUS_9
  SETD7 MUTATED        2
  SETD7 WILD-TYPE     72
D2115V10, multiclass
        clus
vv       SETD7 MUTATED SETD7 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD7 MUTATED        1      0      0      1
  SETD7 WILD-TYPE     32     31     27     18
D2115V11, multiclass
[1] "Remove cluster labels:" "SETD7 MUTATED"         
clus
  SETD7 MUTATED SETD7 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD7 MUTATED        1      0      1      0
  SETD7 WILD-TYPE     53     10     23     22
D2115V12, multiclass
[1] "Remove cluster labels:" "SETD7 MUTATED"         
clus
  SETD7 MUTATED SETD7 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" "SETD7 WILD-TYPE" 

Clustering(2116) Variable = ARHGAP10 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP10 MUTATED        1      0      0      1
  ARHGAP10 WILD-TYPE     45     58     64     42
D2116V1, multiclass
[1] "Remove cluster labels:" "ARHGAP10 MUTATED"      
clus
  ARHGAP10 MUTATED ARHGAP10 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP10 MUTATED        0      2      0
  ARHGAP10 WILD-TYPE     51     81     77
D2116V2, multiclass
[1] "Remove cluster labels:" "ARHGAP10 MUTATED"      
clus
  ARHGAP10 MUTATED ARHGAP10 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"ARHGAP10 WILD-TYPE" "ARHGAP10 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP10 MUTATED        6      2      0      1
  ARHGAP10 WILD-TYPE    172    181    101     19
D2116V3, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                6                172
  CLUS_2                2                181
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP10 MUTATED        1      2      4
  ARHGAP10 WILD-TYPE     86     78     96
D2116V4, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                2                 78
  CLUS_3                4                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP10 MUTATED        0      2      6
  ARHGAP10 WILD-TYPE     89    158    132
D2116V5, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                6                132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP10 MUTATED        6      2      0
  ARHGAP10 WILD-TYPE    176    131     72
D2116V6, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                6                176
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP10 MUTATED        2      3      2      2
  ARHGAP10 WILD-TYPE    110     93     90    184
D2116V7, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                2                110
  CLUS_2                3                 93
  CLUS_3                2                 90
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARHGAP10 MUTATED        1      0      3      1      2      1      1
  ARHGAP10 WILD-TYPE     59     50     46     39     61    124     98
D2116V8, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                3                 46
  CLUS_4                1                 39
  CLUS_5                2                 61
  CLUS_6                1                124
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP10 MUTATED        3      1      1      4
  ARHGAP10 WILD-TYPE    127     77     67    192
D2116V9, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ARHGAP10 MUTATED        0      1      1      3      2      0      2      0
  ARHGAP10 WILD-TYPE     40     61     27     77     67     48     41     28
                    vv
clus                 CLUS_9
  ARHGAP10 MUTATED        0
  ARHGAP10 WILD-TYPE     74
D2116V10, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                3                 77
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                2                 41
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP10 MUTATED        0      1      1      2
  ARHGAP10 WILD-TYPE     33     30     26     17
D2116V11, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP10 MUTATED        2      1      1      0
  ARHGAP10 WILD-TYPE     52      9     23     22
D2116V12, multiclass
        clus
vv       ARHGAP10 MUTATED ARHGAP10 WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                1                  9
  CLUS_3                1                 23
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2117) Variable = C9ORF102 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF102 MUTATED        3      0      0      3
  C9ORF102 WILD-TYPE     43     58     64     40
D2117V1, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF102 MUTATED        2      2      2
  C9ORF102 WILD-TYPE     49     81     75
D2117V2, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF102 MUTATED        9      0      0      0
  C9ORF102 WILD-TYPE    169    183    101     20
D2117V3, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                9                169
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF102 MUTATED        1      0      3
  C9ORF102 WILD-TYPE     86     80     97
D2117V4, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                0                 80
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF102 MUTATED        1      2      3
  C9ORF102 WILD-TYPE     88    158    135
D2117V5, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF102 MUTATED        3      3      0
  C9ORF102 WILD-TYPE    179    130     72
D2117V6, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                3                130
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF102 MUTATED        0      1      4      5
  C9ORF102 WILD-TYPE    112     95     88    181
D2117V7, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                4                 88
  CLUS_4                5                181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C9ORF102 MUTATED        1      1      2      0      1      1      4
  C9ORF102 WILD-TYPE     59     49     47     40     62    124     95
D2117V8, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                1                 62
  CLUS_6                1                124
  CLUS_7                4                 95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF102 MUTATED        1      2      0      7
  C9ORF102 WILD-TYPE    129     76     68    189
D2117V9, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                2                 76
  CLUS_3                0                 68
  CLUS_4                7                189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C9ORF102 MUTATED        0      3      2      2      2      0      0      1
  C9ORF102 WILD-TYPE     40     59     26     78     67     48     43     27
                    vv
clus                 CLUS_9
  C9ORF102 MUTATED        0
  C9ORF102 WILD-TYPE     74
D2117V10, multiclass
        clus
vv       C9ORF102 MUTATED C9ORF102 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 59
  CLUS_3                2                 26
  CLUS_4                2                 78
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF102 MUTATED        0      1      0      1
  C9ORF102 WILD-TYPE     33     30     27     18
D2117V11, multiclass
[1] "Remove cluster labels:" "C9ORF102 MUTATED"      
clus
  C9ORF102 MUTATED C9ORF102 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-6548         TCGA-AD-6889 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6674         TCGA-CM-6676 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF102 MUTATED        2      0      0      0
  C9ORF102 WILD-TYPE     52     10     24     22
D2117V12, multiclass
[1] "Remove cluster labels:" "C9ORF102 MUTATED"      
clus
  C9ORF102 MUTATED C9ORF102 WILD-TYPE 
                 2                108 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-6548         TCGA-AD-6889 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AD-6901         TCGA-AD-6963         TCGA-AD-6964 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AD-6965         TCGA-AF-2687         TCGA-AF-4110 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3731 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AG-3732         TCGA-AH-6544         TCGA-AH-6547 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AH-6549         TCGA-AH-6643         TCGA-AY-6196 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-5403 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6600         TCGA-AZ-6601 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-AZ-6603         TCGA-AZ-6605         TCGA-AZ-6607 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CA-6718         TCGA-CA-6719         TCGA-CI-6619 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CI-6620         TCGA-CI-6621         TCGA-CI-6624 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CK-5916         TCGA-CK-6748         TCGA-CL-5918 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6674         TCGA-CM-6676 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CM-6677         TCGA-CM-6678         TCGA-CM-6679 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-CM-6680         TCGA-D5-5537         TCGA-D5-6533 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-D5-6534         TCGA-D5-6536         TCGA-D5-6922 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-D5-6924         TCGA-DC-5337         TCGA-DC-5869 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6681 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DM-A0XD 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D7 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A1D8         TCGA-DM-A1D9         TCGA-DM-A1DA 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A282         TCGA-DM-A285 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DY-A1DC         TCGA-DY-A1DD 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EI-6506 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-EI-6507         TCGA-F4-6459         TCGA-F4-6460 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6704 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F4-6805         TCGA-F4-6807         TCGA-F4-6808 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F4-6809         TCGA-F5-6464         TCGA-F5-6465 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6811 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-F5-6812         TCGA-G4-6299         TCGA-G4-6303 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-G4-6306         TCGA-G4-6309         TCGA-G4-6625 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 
        TCGA-G4-6628         TCGA-G5-6235         TCGA-G5-6641 
"C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" "C9ORF102 WILD-TYPE" 

Clustering(2118) Variable = LRMP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRMP MUTATED        1      1      0      2
  LRMP WILD-TYPE     45     57     64     41
D2118V1, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRMP MUTATED        2      1      1
  LRMP WILD-TYPE     49     82     76
D2118V2, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRMP MUTATED        4      3      0      0
  LRMP WILD-TYPE    174    180    101     20
D2118V3, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            4            174
  CLUS_2            3            180
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRMP MUTATED        2      2      0
  LRMP WILD-TYPE     85     78    100
D2118V4, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            2             85
  CLUS_2            2             78
  CLUS_3            0            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRMP MUTATED        0      3      3
  LRMP WILD-TYPE     89    157    135
D2118V5, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRMP MUTATED        2      4      0
  LRMP WILD-TYPE    180    129     72
D2118V6, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRMP MUTATED        3      1      1      2
  LRMP WILD-TYPE    109     95     91    184
D2118V7, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            3            109
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRMP MUTATED        1      1      0      0      1      1      3
  LRMP WILD-TYPE     59     49     49     40     62    124     96
D2118V8, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRMP MUTATED        0      1      3      2
  LRMP WILD-TYPE    130     77     65    194
D2118V9, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            0            130
  CLUS_2            1             77
  CLUS_3            3             65
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LRMP MUTATED        0      1      0      0      1      1      1      1      1
  LRMP WILD-TYPE     40     61     28     80     68     47     42     27     73
D2118V10, multiclass
        clus
vv       LRMP MUTATED LRMP WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRMP MUTATED        2      0      0      0
  LRMP WILD-TYPE     31     31     27     19
D2118V11, multiclass
[1] "Remove cluster labels:" "LRMP MUTATED"          
clus
  LRMP MUTATED LRMP WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A1D0 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRMP MUTATED        0      0      0      2
  LRMP WILD-TYPE     54     10     24     20
D2118V12, multiclass
[1] "Remove cluster labels:" "LRMP MUTATED"          
clus
  LRMP MUTATED LRMP WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A1D0 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" "LRMP WILD-TYPE" 

Clustering(2119) Variable = LSM14A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSM14A MUTATED        2      0      1      2
  LSM14A WILD-TYPE     44     58     63     41
D2119V1, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LSM14A MUTATED        2      1      2
  LSM14A WILD-TYPE     49     82     75
D2119V2, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSM14A MUTATED       10      1      0      0
  LSM14A WILD-TYPE    168    182    101     20
D2119V3, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1             10              168
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LSM14A MUTATED        3      0      2
  LSM14A WILD-TYPE     84     80     98
D2119V4, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LSM14A MUTATED        2      1      3
  LSM14A WILD-TYPE     87    159    135
D2119V5, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              2               87
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LSM14A MUTATED        4      1      1
  LSM14A WILD-TYPE    178    132     71
D2119V6, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSM14A MUTATED        0      3      2      6
  LSM14A WILD-TYPE    112     93     90    180
D2119V7, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              6              180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LSM14A MUTATED        0      1      3      0      1      2      4
  LSM14A WILD-TYPE     60     49     46     40     62    123     95
D2119V8, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSM14A MUTATED        3      2      0      6
  LSM14A WILD-TYPE    127     76     68    190
D2119V9, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              3              127
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LSM14A MUTATED        0      3      1      2      5      0      0      0
  LSM14A WILD-TYPE     40     59     27     78     64     48     43     28
                  vv
clus               CLUS_9
  LSM14A MUTATED        0
  LSM14A WILD-TYPE     74
D2119V10, multiclass
        clus
vv       LSM14A MUTATED LSM14A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              1               27
  CLUS_4              2               78
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSM14A MUTATED        0      0      0      0
  LSM14A WILD-TYPE     33     31     27     19
D2119V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSM14A MUTATED        0      0      0      0
  LSM14A WILD-TYPE     54     10     24     22
D2119V12, multiclass

Clustering(2120) Variable = SMPDL3B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPDL3B MUTATED        0      0      1      1
  SMPDL3B WILD-TYPE     46     58     63     42
D2120V1, multiclass
[1] "Remove cluster labels:" "SMPDL3B MUTATED"       
clus
  SMPDL3B MUTATED SMPDL3B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AY-4071 
"SMPDL3B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMPDL3B MUTATED        1      1      0
  SMPDL3B WILD-TYPE     50     82     77
D2120V2, multiclass
[1] "Remove cluster labels:" "SMPDL3B MUTATED"       
clus
  SMPDL3B MUTATED SMPDL3B WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3866 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" "SMPDL3B WILD-TYPE" 
       TCGA-AY-4071 
"SMPDL3B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPDL3B MUTATED        5      3      1      0
  SMPDL3B WILD-TYPE    173    180    100     20
D2120V3, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               5               173
  CLUS_2               3               180
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMPDL3B MUTATED        1      0      6
  SMPDL3B WILD-TYPE     86     80     94
D2120V4, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               6                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMPDL3B MUTATED        2      3      3
  SMPDL3B WILD-TYPE     87    157    135
D2120V5, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               2                87
  CLUS_2               3               157
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMPDL3B MUTATED        3      3      2
  SMPDL3B WILD-TYPE    179    130     70
D2120V6, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               3               179
  CLUS_2               3               130
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPDL3B MUTATED        0      4      3      2
  SMPDL3B WILD-TYPE    112     92     89    184
D2120V7, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               0               112
  CLUS_2               4                92
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMPDL3B MUTATED        0      3      3      1      0      1      1
  SMPDL3B WILD-TYPE     60     47     46     39     63    124     98
D2120V8, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               0                60
  CLUS_2               3                47
  CLUS_3               3                46
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPDL3B MUTATED        7      0      1      1
  SMPDL3B WILD-TYPE    123     78     67    195
D2120V9, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               7               123
  CLUS_2               0                78
  CLUS_3               1                67
  CLUS_4               1               195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMPDL3B MUTATED        2      1      0      1      3      0      1      0
  SMPDL3B WILD-TYPE     38     61     28     79     66     48     42     28
                   vv
clus                CLUS_9
  SMPDL3B MUTATED        1
  SMPDL3B WILD-TYPE     73
D2120V10, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPDL3B MUTATED        1      0      0      3
  SMPDL3B WILD-TYPE     32     31     27     16
D2120V11, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPDL3B MUTATED        3      0      1      0
  SMPDL3B WILD-TYPE     51     10     23     22
D2120V12, multiclass
        clus
vv       SMPDL3B MUTATED SMPDL3B WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2121) Variable = KIF26A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF26A MUTATED        0      0      0      0
  KIF26A WILD-TYPE     46     58     64     43
D2121V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF26A MUTATED        0      0      0
  KIF26A WILD-TYPE     51     83     77
D2121V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF26A MUTATED        9      1      0      0
  KIF26A WILD-TYPE    169    182    101     20
D2121V3, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              9              169
  CLUS_2              1              182
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF26A MUTATED        2      0      8
  KIF26A WILD-TYPE     85     80     92
D2121V4, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF26A MUTATED        0      3      7
  KIF26A WILD-TYPE     89    157    131
D2121V5, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              7              131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF26A MUTATED        6      4      0
  KIF26A WILD-TYPE    176    129     72
D2121V6, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              6              176
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF26A MUTATED        0      5      5      0
  KIF26A WILD-TYPE    112     91     87    186
D2121V7, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              0              112
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIF26A MUTATED        0      1      8      0      0      0      1
  KIF26A WILD-TYPE     60     49     41     40     63    125     98
D2121V8, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              8               41
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF26A MUTATED        4      2      0      4
  KIF26A WILD-TYPE    126     76     68    192
D2121V9, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              4              126
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIF26A MUTATED        0      3      0      1      5      0      1      0
  KIF26A WILD-TYPE     40     59     28     79     64     48     42     28
                  vv
clus               CLUS_9
  KIF26A MUTATED        0
  KIF26A WILD-TYPE     74
D2121V10, multiclass
        clus
vv       KIF26A MUTATED KIF26A WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              5               64
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF26A MUTATED        0      0      0      2
  KIF26A WILD-TYPE     33     31     27     17
D2121V11, multiclass
[1] "Remove cluster labels:" "KIF26A MUTATED"        
clus
  KIF26A MUTATED KIF26A WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1HA 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF26A MUTATED        1      0      1      0
  KIF26A WILD-TYPE     53     10     23     22
D2121V12, multiclass
[1] "Remove cluster labels:" "KIF26A MUTATED"        
clus
  KIF26A MUTATED KIF26A WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-6748       TCGA-CL-5918 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1HA 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" "KIF26A WILD-TYPE" 

Clustering(2122) Variable = KDELR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR2 MUTATED        1      0      0      1
  KDELR2 WILD-TYPE     45     58     64     42
D2122V1, multiclass
[1] "Remove cluster labels:" "KDELR2 MUTATED"        
clus
  KDELR2 MUTATED KDELR2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AY-4071 
"KDELR2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR2 MUTATED        1      0      1
  KDELR2 WILD-TYPE     50     83     76
D2122V2, multiclass
[1] "Remove cluster labels:" "KDELR2 MUTATED"        
clus
  KDELR2 MUTATED KDELR2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" "KDELR2 WILD-TYPE" 
      TCGA-AY-4071 
"KDELR2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR2 MUTATED        2      2      2      0
  KDELR2 WILD-TYPE    176    181     99     20
D2122V3, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              2              176
  CLUS_2              2              181
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR2 MUTATED        1      2      1
  KDELR2 WILD-TYPE     86     78     99
D2122V4, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              2               78
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR2 MUTATED        0      3      3
  KDELR2 WILD-TYPE     89    157    135
D2122V5, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR2 MUTATED        3      2      1
  KDELR2 WILD-TYPE    179    131     71
D2122V6, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR2 MUTATED        2      1      0      3
  KDELR2 WILD-TYPE    110     95     92    183
D2122V7, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               95
  CLUS_3              0               92
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KDELR2 MUTATED        3      1      0      0      0      1      1
  KDELR2 WILD-TYPE     57     49     49     40     63    124     98
D2122V8, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              3               57
  CLUS_2              1               49
  CLUS_3              0               49
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR2 MUTATED        2      0      1      3
  KDELR2 WILD-TYPE    128     78     67    193
D2122V9, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KDELR2 MUTATED        1      0      1      1      2      0      1      0
  KDELR2 WILD-TYPE     39     62     27     79     67     48     42     28
                  vv
clus               CLUS_9
  KDELR2 MUTATED        0
  KDELR2 WILD-TYPE     74
D2122V10, multiclass
        clus
vv       KDELR2 MUTATED KDELR2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR2 MUTATED        0      0      0      0
  KDELR2 WILD-TYPE     33     31     27     19
D2122V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR2 MUTATED        0      0      0      0
  KDELR2 WILD-TYPE     54     10     24     22
D2122V12, multiclass

Clustering(2123) Variable = SIAH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIAH2 MUTATED        2      0      0      2
  SIAH2 WILD-TYPE     44     58     64     41
D2123V1, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIAH2 MUTATED        3      1      0
  SIAH2 WILD-TYPE     48     82     77
D2123V2, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIAH2 MUTATED        7      1      1      0
  SIAH2 WILD-TYPE    171    182    100     20
D2123V3, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIAH2 MUTATED        3      0      2
  SIAH2 WILD-TYPE     84     80     98
D2123V4, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIAH2 MUTATED        0      3      5
  SIAH2 WILD-TYPE     89    157    133
D2123V5, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SIAH2 MUTATED        4      3      1
  SIAH2 WILD-TYPE    178    130     71
D2123V6, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIAH2 MUTATED        2      1      1      5
  SIAH2 WILD-TYPE    110     95     91    181
D2123V7, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             1              95
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIAH2 MUTATED        0      1      2      0      1      0      5
  SIAH2 WILD-TYPE     60     49     47     40     62    125     94
D2123V8, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIAH2 MUTATED        2      0      1      5
  SIAH2 WILD-TYPE    128     78     67    191
D2123V9, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SIAH2 MUTATED        0      0      1      1      3      0      1      1
  SIAH2 WILD-TYPE     40     62     27     79     66     48     42     27
                 vv
clus              CLUS_9
  SIAH2 MUTATED        1
  SIAH2 WILD-TYPE     73
D2123V10, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIAH2 MUTATED        0      0      2      1
  SIAH2 WILD-TYPE     33     31     25     18
D2123V11, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIAH2 MUTATED        0      0      2      1
  SIAH2 WILD-TYPE     54     10     22     21
D2123V12, multiclass
        clus
vv       SIAH2 MUTATED SIAH2 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2124) Variable = C6ORF203 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF203 MUTATED        0      0      0      2
  C6ORF203 WILD-TYPE     46     58     64     41
D2124V1, multiclass
[1] "Remove cluster labels:" "C6ORF203 MUTATED"      
clus
  C6ORF203 MUTATED C6ORF203 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3866 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF203 MUTATED        1      1      0
  C6ORF203 WILD-TYPE     50     82     77
D2124V2, multiclass
[1] "Remove cluster labels:" "C6ORF203 MUTATED"      
clus
  C6ORF203 MUTATED C6ORF203 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3866 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3867         TCGA-AA-3869         TCGA-AA-3870 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3872         TCGA-AA-3875         TCGA-AA-3877 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3930         TCGA-AA-3939         TCGA-AA-3941 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3950 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3968         TCGA-AA-3971 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3972         TCGA-AA-3973         TCGA-AA-3975 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3976         TCGA-AA-3977         TCGA-AA-3979 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3984 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-3989         TCGA-AA-3994 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"C6ORF203 WILD-TYPE" "C6ORF203 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF203 MUTATED        5      0      0      0
  C6ORF203 WILD-TYPE    173    183    101     20
D2124V3, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                5                173
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF203 MUTATED        1      0      2
  C6ORF203 WILD-TYPE     86     80     98
D2124V4, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                1                 86
  CLUS_2                0                 80
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF203 MUTATED        1      2      1
  C6ORF203 WILD-TYPE     88    158    137
D2124V5, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                2                158
  CLUS_3                1                137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF203 MUTATED        1      2      1
  C6ORF203 WILD-TYPE    181    131     71
D2124V6, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                1                181
  CLUS_2                2                131
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF203 MUTATED        0      3      0      2
  C6ORF203 WILD-TYPE    112     93     92    184
D2124V7, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                3                 93
  CLUS_3                0                 92
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF203 MUTATED        0      0      2      0      0      0      3
  C6ORF203 WILD-TYPE     60     50     47     40     63    125     96
D2124V8, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                0                 60
  CLUS_2                0                 50
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF203 MUTATED        2      0      0      3
  C6ORF203 WILD-TYPE    128     78     68    193
D2124V9, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                2                128
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                3                193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF203 MUTATED        0      0      1      0      4      0      0      0
  C6ORF203 WILD-TYPE     40     62     27     80     65     48     43     28
                    vv
clus                 CLUS_9
  C6ORF203 MUTATED        0
  C6ORF203 WILD-TYPE     74
D2124V10, multiclass
        clus
vv       C6ORF203 MUTATED C6ORF203 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                0                 62
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                4                 65
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF203 MUTATED        0      0      0      0
  C6ORF203 WILD-TYPE     33     31     27     19
D2124V11, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF203 MUTATED        0      0      0      0
  C6ORF203 WILD-TYPE     54     10     24     22
D2124V12, multiclass

Clustering(2125) Variable = GPR158 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR158 MUTATED        2      1      2      4
  GPR158 WILD-TYPE     44     57     62     39
D2125V1, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              2               62
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR158 MUTATED        3      2      4
  GPR158 WILD-TYPE     48     81     73
D2125V2, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              2               81
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR158 MUTATED       20      7      1      1
  GPR158 WILD-TYPE    158    176    100     19
D2125V3, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1             20              158
  CLUS_2              7              176
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR158 MUTATED        7      4      7
  GPR158 WILD-TYPE     80     76     93
D2125V4, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              4               76
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR158 MUTATED        4      9     11
  GPR158 WILD-TYPE     85    151    127
D2125V5, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              9              151
  CLUS_3             11              127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR158 MUTATED       13      8      3
  GPR158 WILD-TYPE    169    125     69
D2125V6, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1             13              169
  CLUS_2              8              125
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR158 MUTATED        4      5      9     10
  GPR158 WILD-TYPE    108     91     83    176
D2125V7, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              5               91
  CLUS_3              9               83
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR158 MUTATED        4      1     12      0      2      3      6
  GPR158 WILD-TYPE     56     49     37     40     61    122     93
D2125V8, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3             12               37
  CLUS_4              0               40
  CLUS_5              2               61
  CLUS_6              3              122
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR158 MUTATED       10      7      2      9
  GPR158 WILD-TYPE    120     71     66    187
D2125V9, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1             10              120
  CLUS_2              7               71
  CLUS_3              2               66
  CLUS_4              9              187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GPR158 MUTATED        0      8      3      4      9      3      1      0
  GPR158 WILD-TYPE     40     54     25     76     60     45     42     28
                  vv
clus               CLUS_9
  GPR158 MUTATED        0
  GPR158 WILD-TYPE     74
D2125V10, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              8               54
  CLUS_3              3               25
  CLUS_4              4               76
  CLUS_5              9               60
  CLUS_6              3               45
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR158 MUTATED        4      0      0      5
  GPR158 WILD-TYPE     29     31     27     14
D2125V11, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              5               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR158 MUTATED        7      0      1      1
  GPR158 WILD-TYPE     47     10     23     21
D2125V12, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              7               47
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2126) Variable = CSNK1E MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1E MUTATED        1      0      0      1
  CSNK1E WILD-TYPE     45     58     64     42
D2126V1, multiclass
[1] "Remove cluster labels:" "CSNK1E MUTATED"        
clus
  CSNK1E MUTATED CSNK1E WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AY-4071 
"CSNK1E WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1E MUTATED        1      0      1
  CSNK1E WILD-TYPE     50     83     76
D2126V2, multiclass
[1] "Remove cluster labels:" "CSNK1E MUTATED"        
clus
  CSNK1E MUTATED CSNK1E WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560       TCGA-AA-3561 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3696 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818       TCGA-AA-3819 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3950 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" "CSNK1E WILD-TYPE" 
      TCGA-AY-4071 
"CSNK1E WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1E MUTATED        8      0      1      0
  CSNK1E WILD-TYPE    170    183    100     20
D2126V3, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              8              170
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1E MUTATED        3      0      5
  CSNK1E WILD-TYPE     84     80     95
D2126V4, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1E MUTATED        1      5      3
  CSNK1E WILD-TYPE     88    155    135
D2126V5, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CSNK1E MUTATED        4      2      3
  CSNK1E WILD-TYPE    178    131     69
D2126V6, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              4              178
  CLUS_2              2              131
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1E MUTATED        1      3      3      2
  CSNK1E WILD-TYPE    111     93     89    184
D2126V7, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               93
  CLUS_3              3               89
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSNK1E MUTATED        2      0      4      1      1      0      1
  CSNK1E WILD-TYPE     58     50     45     39     62    125     98
D2126V8, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1E MUTATED        1      4      0      4
  CSNK1E WILD-TYPE    129     74     68    192
D2126V9, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              1              129
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CSNK1E MUTATED        1      3      0      1      3      1      0      0
  CSNK1E WILD-TYPE     39     59     28     79     66     47     43     28
                  vv
clus               CLUS_9
  CSNK1E MUTATED        0
  CSNK1E WILD-TYPE     74
D2126V10, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1E MUTATED        1      1      0      1
  CSNK1E WILD-TYPE     32     30     27     18
D2126V11, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1E MUTATED        3      0      0      0
  CSNK1E WILD-TYPE     51     10     24     22
D2126V12, multiclass
        clus
vv       CSNK1E MUTATED CSNK1E WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2127) Variable = RNF103 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF103 MUTATED        4      0      0      1
  RNF103 WILD-TYPE     42     58     64     42
D2127V1, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF103 MUTATED        3      1      1
  RNF103 WILD-TYPE     48     82     76
D2127V2, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF103 MUTATED        9      0      0      0
  RNF103 WILD-TYPE    169    183    101     20
D2127V3, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF103 MUTATED        1      0      3
  RNF103 WILD-TYPE     86     80     97
D2127V4, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF103 MUTATED        0      2      5
  RNF103 WILD-TYPE     89    158    133
D2127V5, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              2              158
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF103 MUTATED        3      3      1
  RNF103 WILD-TYPE    179    130     71
D2127V6, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF103 MUTATED        0      2      2      5
  RNF103 WILD-TYPE    112     94     90    181
D2127V7, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RNF103 MUTATED        1      1      1      0      1      1      4
  RNF103 WILD-TYPE     59     49     48     40     62    124     95
D2127V8, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF103 MUTATED        1      1      0      6
  RNF103 WILD-TYPE    129     77     68    190
D2127V9, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RNF103 MUTATED        0      1      0      2      4      0      1      0
  RNF103 WILD-TYPE     40     61     28     78     65     48     42     28
                  vv
clus               CLUS_9
  RNF103 MUTATED        0
  RNF103 WILD-TYPE     74
D2127V10, multiclass
        clus
vv       RNF103 MUTATED RNF103 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF103 MUTATED        0      0      0      1
  RNF103 WILD-TYPE     33     31     27     18
D2127V11, multiclass
[1] "Remove cluster labels:" "RNF103 MUTATED"        
clus
  RNF103 MUTATED RNF103 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-G5-6641 
"RNF103 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF103 MUTATED        1      0      0      0
  RNF103 WILD-TYPE     53     10     24     22
D2127V12, multiclass
[1] "Remove cluster labels:" "RNF103 MUTATED"        
clus
  RNF103 MUTATED RNF103 WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-CM-6680       TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-D5-6536       TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DC-5869       TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DC-6682       TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DM-A1D0       TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DM-A1DA       TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DM-A28F       TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-DY-A1H8       TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F4-6460       TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F4-6805       TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F5-6464       TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-F5-6811       TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-G4-6306       TCGA-G4-6309       TCGA-G4-6625       TCGA-G5-6235 
"RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" "RNF103 WILD-TYPE" 
      TCGA-G5-6641 
"RNF103 WILD-TYPE" 

Clustering(2128) Variable = CEBPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEBPA MUTATED        0      0      0      0
  CEBPA WILD-TYPE     46     58     64     43
D2128V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEBPA MUTATED        0      0      0
  CEBPA WILD-TYPE     51     83     77
D2128V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEBPA MUTATED        8      6      3      0
  CEBPA WILD-TYPE    170    177     98     20
D2128V3, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             8             170
  CLUS_2             6             177
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEBPA MUTATED        6      4      7
  CEBPA WILD-TYPE     81     76     93
D2128V4, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEBPA MUTATED        0      3     12
  CEBPA WILD-TYPE     89    157    126
D2128V5, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3            12             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEBPA MUTATED       11      4      0
  CEBPA WILD-TYPE    171    129     72
D2128V6, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1            11             171
  CLUS_2             4             129
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEBPA MUTATED        6      7      4      0
  CEBPA WILD-TYPE    106     89     88    186
D2128V7, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             6             106
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CEBPA MUTATED        1      3      7      3      3      0      0
  CEBPA WILD-TYPE     59     47     42     37     60    125     99
D2128V8, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             1              59
  CLUS_2             3              47
  CLUS_3             7              42
  CLUS_4             3              37
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEBPA MUTATED       14      2      1      0
  CEBPA WILD-TYPE    116     76     67    196
D2128V9, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1            14             116
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CEBPA MUTATED        4      3      0      1      5      2      2      0
  CEBPA WILD-TYPE     36     59     28     79     64     46     41     28
                 vv
clus              CLUS_9
  CEBPA MUTATED        0
  CEBPA WILD-TYPE     74
D2128V10, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             4              36
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             2              46
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEBPA MUTATED        1      1      1      2
  CEBPA WILD-TYPE     32     30     26     17
D2128V11, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEBPA MUTATED        2      0      2      1
  CEBPA WILD-TYPE     52     10     22     21
D2128V12, multiclass
        clus
vv       CEBPA MUTATED CEBPA WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2129) Variable = YWHAH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YWHAH MUTATED        0      0      0      1
  YWHAH WILD-TYPE     46     58     64     42
D2129V1, multiclass
[1] "Remove cluster labels:" "YWHAH MUTATED"         
clus
  YWHAH MUTATED YWHAH WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YWHAH MUTATED        0      0      1
  YWHAH WILD-TYPE     51     83     76
D2129V2, multiclass
[1] "Remove cluster labels:" "YWHAH MUTATED"         
clus
  YWHAH MUTATED YWHAH WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3584      TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3601      TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3609      TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3883      TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YWHAH MUTATED        2      2      1      0
  YWHAH WILD-TYPE    176    181    100     20
D2129V3, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             2             176
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YWHAH MUTATED        0      3      1
  YWHAH WILD-TYPE     87     77     99
D2129V4, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             0              87
  CLUS_2             3              77
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YWHAH MUTATED        0      3      1
  YWHAH WILD-TYPE     89    157    137
D2129V5, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YWHAH MUTATED        1      3      0
  YWHAH WILD-TYPE    181    130     72
D2129V6, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YWHAH MUTATED        3      1      0      1
  YWHAH WILD-TYPE    109     95     92    185
D2129V7, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  YWHAH MUTATED        3      1      0      0      0      0      1
  YWHAH WILD-TYPE     57     49     49     40     63    125     98
D2129V8, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             0              49
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YWHAH MUTATED        2      1      1      1
  YWHAH WILD-TYPE    128     77     67    195
D2129V9, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             2             128
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  YWHAH MUTATED        0      0      2      1      0      1      1      0
  YWHAH WILD-TYPE     40     62     26     79     69     47     42     28
                 vv
clus              CLUS_9
  YWHAH MUTATED        0
  YWHAH WILD-TYPE     74
D2129V10, multiclass
        clus
vv       YWHAH MUTATED YWHAH WILD-TYPE
  CLUS_1             0              40
  CLUS_2             0              62
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YWHAH MUTATED        1      0      0      0
  YWHAH WILD-TYPE     32     31     27     19
D2129V11, multiclass
[1] "Remove cluster labels:" "YWHAH MUTATED"         
clus
  YWHAH MUTATED YWHAH WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6809      TCGA-F5-6464 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-G5-6641 
"YWHAH WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YWHAH MUTATED        0      0      1      0
  YWHAH WILD-TYPE     54     10     23     22
D2129V12, multiclass
[1] "Remove cluster labels:" "YWHAH MUTATED"         
clus
  YWHAH MUTATED YWHAH WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6809      TCGA-F5-6464 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" "YWHAH WILD-TYPE" 
     TCGA-G5-6641 
"YWHAH WILD-TYPE" 

Clustering(2130) Variable = OR5A1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        0      0      0      0
  OR5A1 WILD-TYPE     46     58     64     43
D2130V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5A1 MUTATED        0      0      0
  OR5A1 WILD-TYPE     51     83     77
D2130V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        3      1      0      1
  OR5A1 WILD-TYPE    175    182    101     19
D2130V3, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             3             175
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5A1 MUTATED        2      1      2
  OR5A1 WILD-TYPE     85     79     98
D2130V4, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5A1 MUTATED        1      1      3
  OR5A1 WILD-TYPE     88    159    135
D2130V5, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5A1 MUTATED        3      2      0
  OR5A1 WILD-TYPE    179    131     72
D2130V6, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        1      3      1      0
  OR5A1 WILD-TYPE    111     93     91    186
D2130V7, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR5A1 MUTATED        2      1      1      1      0      0      0
  OR5A1 WILD-TYPE     58     49     48     39     63    125     99
D2130V8, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        4      0      0      1
  OR5A1 WILD-TYPE    126     78     68    195
D2130V9, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR5A1 MUTATED        2      0      0      0      1      1      0      0
  OR5A1 WILD-TYPE     38     62     28     80     68     47     43     28
                 vv
clus              CLUS_9
  OR5A1 MUTATED        1
  OR5A1 WILD-TYPE     73
D2130V10, multiclass
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             0              62
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        0      1      0      0
  OR5A1 WILD-TYPE     33     30     27     19
D2130V11, multiclass
[1] "Remove cluster labels:" "OR5A1 MUTATED"         
clus
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-G5-6641 
"OR5A1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5A1 MUTATED        1      0      0      0
  OR5A1 WILD-TYPE     53     10     24     22
D2130V12, multiclass
[1] "Remove cluster labels:" "OR5A1 MUTATED"         
clus
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-G5-6641 
"OR5A1 WILD-TYPE" 

Clustering(2131) Variable = IP6K3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IP6K3 MUTATED        1      0      1      3
  IP6K3 WILD-TYPE     45     58     63     40
D2131V1, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IP6K3 MUTATED        2      2      1
  IP6K3 WILD-TYPE     49     81     76
D2131V2, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IP6K3 MUTATED        7      0      2      0
  IP6K3 WILD-TYPE    171    183     99     20
D2131V3, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IP6K3 MUTATED        4      0      0
  IP6K3 WILD-TYPE     83     80    100
D2131V4, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IP6K3 MUTATED        0      3      3
  IP6K3 WILD-TYPE     89    157    135
D2131V5, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IP6K3 MUTATED        4      2      0
  IP6K3 WILD-TYPE    178    131     72
D2131V6, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IP6K3 MUTATED        0      2      3      4
  IP6K3 WILD-TYPE    112     94     89    182
D2131V7, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IP6K3 MUTATED        1      0      2      1      1      1      3
  IP6K3 WILD-TYPE     59     50     47     39     62    124     96
D2131V8, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IP6K3 MUTATED        1      2      0      6
  IP6K3 WILD-TYPE    129     76     68    190
D2131V9, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IP6K3 MUTATED        1      2      1      2      3      0      0      0
  IP6K3 WILD-TYPE     39     60     27     78     66     48     43     28
                 vv
clus              CLUS_9
  IP6K3 MUTATED        0
  IP6K3 WILD-TYPE     74
D2131V10, multiclass
        clus
vv       IP6K3 MUTATED IP6K3 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IP6K3 MUTATED        1      0      0      1
  IP6K3 WILD-TYPE     32     31     27     18
D2131V11, multiclass
[1] "Remove cluster labels:" "IP6K3 MUTATED"         
clus
  IP6K3 MUTATED IP6K3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IP6K3 MUTATED        2      0      0      0
  IP6K3 WILD-TYPE     52     10     24     22
D2131V12, multiclass
[1] "Remove cluster labels:" "IP6K3 MUTATED"         
clus
  IP6K3 MUTATED IP6K3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6965      TCGA-AF-2687 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549      TCGA-AH-6643 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616      TCGA-AZ-5403 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601      TCGA-AZ-6603 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718      TCGA-CA-6719 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" "IP6K3 WILD-TYPE" 

Clustering(2132) Variable = CLSTN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        4      0      0      1
  CLSTN1 WILD-TYPE     42     58     64     42
D2132V1, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLSTN1 MUTATED        4      1      0
  CLSTN1 WILD-TYPE     47     82     77
D2132V2, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED       13      2      0      1
  CLSTN1 WILD-TYPE    165    181    101     19
D2132V3, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLSTN1 MUTATED        6      0      5
  CLSTN1 WILD-TYPE     81     80     95
D2132V4, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              6               81
  CLUS_2              0               80
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLSTN1 MUTATED        1      5      8
  CLSTN1 WILD-TYPE     88    155    130
D2132V5, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLSTN1 MUTATED        6      6      2
  CLSTN1 WILD-TYPE    176    127     70
D2132V6, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              6              127
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        1      5      5      5
  CLSTN1 WILD-TYPE    111     91     87    181
D2132V7, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              5               91
  CLUS_3              5               87
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLSTN1 MUTATED        1      2      7      0      0      0      6
  CLSTN1 WILD-TYPE     59     48     42     40     63    125     93
D2132V8, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              2               48
  CLUS_3              7               42
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        5      3      1      7
  CLSTN1 WILD-TYPE    125     75     67    189
D2132V9, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              3               75
  CLUS_3              1               67
  CLUS_4              7              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CLSTN1 MUTATED        1      4      1      0      5      1      0      3
  CLSTN1 WILD-TYPE     39     58     27     80     64     47     43     25
                  vv
clus               CLUS_9
  CLSTN1 MUTATED        1
  CLSTN1 WILD-TYPE     73
D2132V10, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              5               64
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              3               25
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        1      0      0      4
  CLSTN1 WILD-TYPE     32     31     27     15
D2132V11, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              4               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        3      0      1      1
  CLSTN1 WILD-TYPE     51     10     23     21
D2132V12, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2133) Variable = EPC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC2 MUTATED        0      0      0      1
  EPC2 WILD-TYPE     46     58     64     42
D2133V1, multiclass
[1] "Remove cluster labels:" "EPC2 MUTATED"          
clus
  EPC2 MUTATED EPC2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC2 MUTATED        1      0      0
  EPC2 WILD-TYPE     50     83     77
D2133V2, multiclass
[1] "Remove cluster labels:" "EPC2 MUTATED"          
clus
  EPC2 MUTATED EPC2 WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00O 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"EPC2 WILD-TYPE" "EPC2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC2 MUTATED        8      1      1      0
  EPC2 WILD-TYPE    170    182    100     20
D2133V3, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC2 MUTATED        1      2      6
  EPC2 WILD-TYPE     86     78     94
D2133V4, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC2 MUTATED        1      3      5
  EPC2 WILD-TYPE     88    157    133
D2133V5, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            5            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPC2 MUTATED        5      3      1
  EPC2 WILD-TYPE    177    130     71
D2133V6, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC2 MUTATED        2      4      3      1
  EPC2 WILD-TYPE    110     92     89    185
D2133V7, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            4             92
  CLUS_3            3             89
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPC2 MUTATED        2      1      6      0      0      0      1
  EPC2 WILD-TYPE     58     49     43     40     63    125     98
D2133V8, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            6             43
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            1             98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC2 MUTATED        4      2      2      1
  EPC2 WILD-TYPE    126     76     66    195
D2133V9, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            2             76
  CLUS_3            2             66
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  EPC2 MUTATED        0      3      1      0      3      0      2      0      0
  EPC2 WILD-TYPE     40     59     27     80     66     48     41     28     74
D2133V10, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC2 MUTATED        1      0      1      2
  EPC2 WILD-TYPE     32     31     26     17
D2133V11, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPC2 MUTATED        3      0      1      0
  EPC2 WILD-TYPE     51     10     23     22
D2133V12, multiclass
        clus
vv       EPC2 MUTATED EPC2 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2134) Variable = SKIV2L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L MUTATED        1      0      0      2
  SKIV2L WILD-TYPE     45     58     64     41
D2134V1, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SKIV2L MUTATED        2      1      0
  SKIV2L WILD-TYPE     49     82     77
D2134V2, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L MUTATED        9      3      0      1
  SKIV2L WILD-TYPE    169    180    101     19
D2134V3, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              9              169
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SKIV2L MUTATED        2      1      7
  SKIV2L WILD-TYPE     85     79     93
D2134V4, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SKIV2L MUTATED        4      4      4
  SKIV2L WILD-TYPE     85    156    134
D2134V5, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              4               85
  CLUS_2              4              156
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SKIV2L MUTATED        7      2      3
  SKIV2L WILD-TYPE    175    131     69
D2134V6, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              7              175
  CLUS_2              2              131
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L MUTATED        2      7      1      3
  SKIV2L WILD-TYPE    110     89     91    183
D2134V7, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              2              110
  CLUS_2              7               89
  CLUS_3              1               91
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SKIV2L MUTATED        1      3      4      1      1      1      2
  SKIV2L WILD-TYPE     59     47     45     39     62    124     97
D2134V8, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              1               59
  CLUS_2              3               47
  CLUS_3              4               45
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L MUTATED        7      4      0      2
  SKIV2L WILD-TYPE    123     74     68    194
D2134V9, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              7              123
  CLUS_2              4               74
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SKIV2L MUTATED        2      2      3      1      3      0      1      1
  SKIV2L WILD-TYPE     38     60     25     79     66     48     42     27
                  vv
clus               CLUS_9
  SKIV2L MUTATED        0
  SKIV2L WILD-TYPE     74
D2134V10, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              3               25
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L MUTATED        1      2      0      1
  SKIV2L WILD-TYPE     32     29     27     18
D2134V11, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SKIV2L MUTATED        2      1      1      0
  SKIV2L WILD-TYPE     52      9     23     22
D2134V12, multiclass
        clus
vv       SKIV2L MUTATED SKIV2L WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2135) Variable = COL5A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL5A2 MUTATED        5      1      0      4
  COL5A2 WILD-TYPE     41     57     64     39
D2135V1, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL5A2 MUTATED        5      3      2
  COL5A2 WILD-TYPE     46     80     75
D2135V2, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              5               46
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL5A2 MUTATED       14      3      5      0
  COL5A2 WILD-TYPE    164    180     96     20
D2135V3, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1             14              164
  CLUS_2              3              180
  CLUS_3              5               96
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL5A2 MUTATED        3      0      9
  COL5A2 WILD-TYPE     84     80     91
D2135V4, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              9               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL5A2 MUTATED        2     10      6
  COL5A2 WILD-TYPE     87    150    132
D2135V5, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2             10              150
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  COL5A2 MUTATED        9      8      1
  COL5A2 WILD-TYPE    173    125     71
D2135V6, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              9              173
  CLUS_2              8              125
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL5A2 MUTATED        0     10      3      9
  COL5A2 WILD-TYPE    112     86     89    177
D2135V7, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2             10               86
  CLUS_3              3               89
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  COL5A2 MUTATED        1      4      5      2      0      2      8
  COL5A2 WILD-TYPE     59     46     44     38     63    123     91
D2135V8, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              4               46
  CLUS_3              5               44
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              8               91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL5A2 MUTATED        5      1      3     12
  COL5A2 WILD-TYPE    125     77     65    184
D2135V9, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              3               65
  CLUS_4             12              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  COL5A2 MUTATED        2      2      2      1      8      0      3      2
  COL5A2 WILD-TYPE     38     60     26     79     61     48     40     26
                  vv
clus               CLUS_9
  COL5A2 MUTATED        1
  COL5A2 WILD-TYPE     73
D2135V10, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              3               40
  CLUS_8              2               26
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL5A2 MUTATED        1      0      1      1
  COL5A2 WILD-TYPE     32     31     26     18
D2135V11, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              1               26
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL5A2 MUTATED        2      0      1      0
  COL5A2 WILD-TYPE     52     10     23     22
D2135V12, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2136) Variable = CPO MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPO MUTATED        1      1      0      0
  CPO WILD-TYPE     45     57     64     43
D2136V1, multiclass
[1] "Remove cluster labels:" "CPO MUTATED"           
clus
  CPO MUTATED CPO WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3667    TCGA-AA-3672 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680    TCGA-AA-3681 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692    TCGA-AA-3693 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811    TCGA-AA-3812 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3821 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004    TCGA-AA-A00A 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPO MUTATED        0      1      1
  CPO WILD-TYPE     51     82     76
D2136V2, multiclass
[1] "Remove cluster labels:" "CPO MUTATED"           
clus
  CPO MUTATED CPO WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3667    TCGA-AA-3672 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680    TCGA-AA-3681 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692    TCGA-AA-3693 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811    TCGA-AA-3812 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819    TCGA-AA-3821 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850    TCGA-AA-3851 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856    TCGA-AA-3858 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866    TCGA-AA-3867 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875    TCGA-AA-3877 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947    TCGA-AA-3949 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956    TCGA-AA-3966 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973    TCGA-AA-3975 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980    TCGA-AA-3982 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994    TCGA-AA-A004    TCGA-AA-A00A 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A00L    TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575    TCGA-AG-3578 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3584 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594    TCGA-AG-3598 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602    TCGA-AG-3605 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612    TCGA-AG-3726 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882    TCGA-AG-3883 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892    TCGA-AG-3893 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901    TCGA-AG-3902 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005    TCGA-AG-4007 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPO MUTATED        5      3      1      0
  CPO WILD-TYPE    173    180    100     20
D2136V3, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           5           173
  CLUS_2           3           180
  CLUS_3           1           100
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPO MUTATED        1      3      3
  CPO WILD-TYPE     86     77     97
D2136V4, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           1            86
  CLUS_2           3            77
  CLUS_3           3            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPO MUTATED        1      1      3
  CPO WILD-TYPE     88    159    135
D2136V5, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           1            88
  CLUS_2           1           159
  CLUS_3           3           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPO MUTATED        3      2      0
  CPO WILD-TYPE    179    131     72
D2136V6, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           3           179
  CLUS_2           2           131
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPO MUTATED        2      3      2      2
  CPO WILD-TYPE    110     93     90    184
D2136V7, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           2           110
  CLUS_2           3            93
  CLUS_3           2            90
  CLUS_4           2           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CPO MUTATED        1      2      1      1      2      1      1
  CPO WILD-TYPE     59     48     48     39     61    124     98
D2136V8, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           1            59
  CLUS_2           2            48
  CLUS_3           1            48
  CLUS_4           1            39
  CLUS_5           2            61
  CLUS_6           1           124
  CLUS_7           1            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPO MUTATED        5      1      0      3
  CPO WILD-TYPE    125     77     68    193
D2136V9, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           5           125
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           3           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CPO MUTATED        2      0      1      3      1      0      1      0      1
  CPO WILD-TYPE     38     62     27     77     68     48     42     28     73
D2136V10, multiclass
        clus
vv       CPO MUTATED CPO WILD-TYPE
  CLUS_1           2            38
  CLUS_2           0            62
  CLUS_3           1            27
  CLUS_4           3            77
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           1            42
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPO MUTATED        1      0      0      1
  CPO WILD-TYPE     32     31     27     18
D2136V11, multiclass
[1] "Remove cluster labels:" "CPO MUTATED"           
clus
  CPO MUTATED CPO WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-G4-6625    TCGA-G5-6235    TCGA-G5-6641 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPO MUTATED        2      0      0      0
  CPO WILD-TYPE     52     10     24     22
D2136V12, multiclass
[1] "Remove cluster labels:" "CPO MUTATED"           
clus
  CPO MUTATED CPO WILD-TYPE 
            2           108 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548    TCGA-AD-6889 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965    TCGA-AF-2687 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AY-6196 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598    TCGA-AZ-6600 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607    TCGA-CA-6718 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 
   TCGA-G4-6625    TCGA-G5-6235    TCGA-G5-6641 
"CPO WILD-TYPE" "CPO WILD-TYPE" "CPO WILD-TYPE" 

Clustering(2137) Variable = CLK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLK4 MUTATED        0      0      0      2
  CLK4 WILD-TYPE     46     58     64     41
D2137V1, multiclass
[1] "Remove cluster labels:" "CLK4 MUTATED"          
clus
  CLK4 MUTATED CLK4 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3556 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667     TCGA-AA-3672 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679     TCGA-AA-3680 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685     TCGA-AA-3688 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696     TCGA-AA-3710 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AY-4071 
"CLK4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLK4 MUTATED        2      0      0
  CLK4 WILD-TYPE     49     83     77
D2137V2, multiclass
[1] "Remove cluster labels:" "CLK4 MUTATED"          
clus
  CLK4 MUTATED CLK4 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3556 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667     TCGA-AA-3672 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679     TCGA-AA-3680 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685     TCGA-AA-3688 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696     TCGA-AA-3710 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" "CLK4 WILD-TYPE" 
    TCGA-AY-4071 
"CLK4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLK4 MUTATED        4      3      1      1
  CLK4 WILD-TYPE    174    180    100     19
D2137V3, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            3            180
  CLUS_3            1            100
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLK4 MUTATED        3      1      3
  CLK4 WILD-TYPE     84     79     97
D2137V4, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            1             79
  CLUS_3            3             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLK4 MUTATED        2      4      2
  CLK4 WILD-TYPE     87    156    136
D2137V5, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            4            156
  CLUS_3            2            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLK4 MUTATED        5      1      2
  CLK4 WILD-TYPE    177    132     70
D2137V6, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            1            132
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLK4 MUTATED        4      0      3      2
  CLK4 WILD-TYPE    108     96     89    184
D2137V7, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            0             96
  CLUS_3            3             89
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CLK4 MUTATED        2      0      3      0      2      0      2
  CLK4 WILD-TYPE     58     50     46     40     61    125     97
D2137V8, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            3             46
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLK4 MUTATED        2      3      2      2
  CLK4 WILD-TYPE    128     75     66    194
D2137V9, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3             75
  CLUS_3            2             66
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CLK4 MUTATED        1      2      1      0      2      1      2      0      0
  CLK4 WILD-TYPE     39     60     27     80     67     47     41     28     74
D2137V10, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLK4 MUTATED        2      1      1      1
  CLK4 WILD-TYPE     31     30     26     18
D2137V11, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             30
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLK4 MUTATED        2      0      0      3
  CLK4 WILD-TYPE     52     10     24     19
D2137V12, multiclass
        clus
vv       CLK4 MUTATED CLK4 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            3             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2138) Variable = SLC9A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A2 MUTATED        1      0      0      1
  SLC9A2 WILD-TYPE     45     58     64     42
D2138V1, multiclass
[1] "Remove cluster labels:" "SLC9A2 MUTATED"        
clus
  SLC9A2 MUTATED SLC9A2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3952 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AY-4071 
"SLC9A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A2 MUTATED        2      0      0
  SLC9A2 WILD-TYPE     49     83     77
D2138V2, multiclass
[1] "Remove cluster labels:" "SLC9A2 MUTATED"        
clus
  SLC9A2 MUTATED SLC9A2 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3952 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" "SLC9A2 WILD-TYPE" 
      TCGA-AY-4071 
"SLC9A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A2 MUTATED        8      1      2      1
  SLC9A2 WILD-TYPE    170    182     99     19
D2138V3, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              8              170
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A2 MUTATED        5      1      4
  SLC9A2 WILD-TYPE     82     79     96
D2138V4, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              5               82
  CLUS_2              1               79
  CLUS_3              4               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A2 MUTATED        0      4      5
  SLC9A2 WILD-TYPE     89    156    133
D2138V5, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              4              156
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A2 MUTATED        6      3      0
  SLC9A2 WILD-TYPE    176    130     72
D2138V6, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A2 MUTATED        1      4      5      2
  SLC9A2 WILD-TYPE    111     92     87    184
D2138V7, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              4               92
  CLUS_3              5               87
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC9A2 MUTATED        0      1      3      1      5      0      2
  SLC9A2 WILD-TYPE     60     49     46     39     58    125     97
D2138V8, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              1               39
  CLUS_5              5               58
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A2 MUTATED        3      3      2      4
  SLC9A2 WILD-TYPE    127     75     66    192
D2138V9, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC9A2 MUTATED        1      4      0      1      3      0      1      1
  SLC9A2 WILD-TYPE     39     58     28     79     66     48     42     27
                  vv
clus               CLUS_9
  SLC9A2 MUTATED        1
  SLC9A2 WILD-TYPE     73
D2138V10, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              4               58
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A2 MUTATED        0      2      2      1
  SLC9A2 WILD-TYPE     33     29     25     18
D2138V11, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               29
  CLUS_3              2               25
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A2 MUTATED        2      1      1      1
  SLC9A2 WILD-TYPE     52      9     23     21
D2138V12, multiclass
        clus
vv       SLC9A2 MUTATED SLC9A2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2139) Variable = KIAA0196 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0196 MUTATED        0      1      0      3
  KIAA0196 WILD-TYPE     46     57     64     40
D2139V1, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                0                 46
  CLUS_2                1                 57
  CLUS_3                0                 64
  CLUS_4                3                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0196 MUTATED        2      2      0
  KIAA0196 WILD-TYPE     49     81     77
D2139V2, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                2                 81
  CLUS_3                0                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0196 MUTATED        7      3      0      1
  KIAA0196 WILD-TYPE    171    180    101     19
D2139V3, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                7                171
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                1                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0196 MUTATED        2      2      3
  KIAA0196 WILD-TYPE     85     78     97
D2139V4, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                2                 78
  CLUS_3                3                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0196 MUTATED        0      7      3
  KIAA0196 WILD-TYPE     89    153    135
D2139V5, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                7                153
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0196 MUTATED        5      4      1
  KIAA0196 WILD-TYPE    177    129     71
D2139V6, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                5                177
  CLUS_2                4                129
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0196 MUTATED        3      4      1      3
  KIAA0196 WILD-TYPE    109     92     91    183
D2139V7, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                4                 92
  CLUS_3                1                 91
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0196 MUTATED        2      3      2      0      0      1      3
  KIAA0196 WILD-TYPE     58     47     47     40     63    124     96
D2139V8, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                3                 47
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                3                 96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0196 MUTATED        3      1      3      4
  KIAA0196 WILD-TYPE    127     77     65    192
D2139V9, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                1                 77
  CLUS_3                3                 65
  CLUS_4                4                192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0196 MUTATED        1      2      2      0      1      1      3      0
  KIAA0196 WILD-TYPE     39     60     26     80     68     47     40     28
                    vv
clus                 CLUS_9
  KIAA0196 MUTATED        1
  KIAA0196 WILD-TYPE     73
D2139V10, multiclass
        clus
vv       KIAA0196 MUTATED KIAA0196 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 60
  CLUS_3                2                 26
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                1                 47
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0196 MUTATED        1      0      0      0
  KIAA0196 WILD-TYPE     32     31     27     19
D2139V11, multiclass
[1] "Remove cluster labels:" "KIAA0196 MUTATED"      
clus
  KIAA0196 MUTATED KIAA0196 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-G5-6641 
"KIAA0196 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0196 MUTATED        0      0      0      1
  KIAA0196 WILD-TYPE     54     10     24     21
D2139V12, multiclass
[1] "Remove cluster labels:" "KIAA0196 MUTATED"      
clus
  KIAA0196 MUTATED KIAA0196 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D8         TCGA-DM-A1D9 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" "KIAA0196 WILD-TYPE" 
        TCGA-G5-6641 
"KIAA0196 WILD-TYPE" 

Clustering(2140) Variable = ANGPTL2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANGPTL2 MUTATED        2      0      0      3
  ANGPTL2 WILD-TYPE     44     58     64     40
D2140V1, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANGPTL2 MUTATED        4      1      0
  ANGPTL2 WILD-TYPE     47     82     77
D2140V2, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               4                47
  CLUS_2               1                82
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANGPTL2 MUTATED       13      0      0      0
  ANGPTL2 WILD-TYPE    165    183    101     20
D2140V3, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANGPTL2 MUTATED        3      0      4
  ANGPTL2 WILD-TYPE     84     80     96
D2140V4, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANGPTL2 MUTATED        3      2      6
  ANGPTL2 WILD-TYPE     86    158    132
D2140V5, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               2               158
  CLUS_3               6               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANGPTL2 MUTATED        6      4      1
  ANGPTL2 WILD-TYPE    176    129     71
D2140V6, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               4               129
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANGPTL2 MUTATED        0      3      5      5
  ANGPTL2 WILD-TYPE    112     93     87    181
D2140V7, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               5                87
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANGPTL2 MUTATED        0      1      7      0      0      0      5
  ANGPTL2 WILD-TYPE     60     49     42     40     63    125     94
D2140V8, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               7                42
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               5                94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANGPTL2 MUTATED        2      2      0      8
  ANGPTL2 WILD-TYPE    128     76     68    188
D2140V9, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               8               188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANGPTL2 MUTATED        0      3      1      0      6      0      0      1
  ANGPTL2 WILD-TYPE     40     59     27     80     63     48     43     27
                   vv
clus                CLUS_9
  ANGPTL2 MUTATED        1
  ANGPTL2 WILD-TYPE     73
D2140V10, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               6                63
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANGPTL2 MUTATED        0      0      0      3
  ANGPTL2 WILD-TYPE     33     31     27     16
D2140V11, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANGPTL2 MUTATED        2      0      1      0
  ANGPTL2 WILD-TYPE     52     10     23     22
D2140V12, multiclass
        clus
vv       ANGPTL2 MUTATED ANGPTL2 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2141) Variable = C2ORF49 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF49 MUTATED        1      0      0      2
  C2ORF49 WILD-TYPE     45     58     64     41
D2141V1, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF49 MUTATED        1      1      1
  C2ORF49 WILD-TYPE     50     82     76
D2141V2, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                82
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF49 MUTATED        5      0      0      0
  C2ORF49 WILD-TYPE    173    183    101     20
D2141V3, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF49 MUTATED        1      0      1
  C2ORF49 WILD-TYPE     86     80     99
D2141V4, multiclass
[1] "Remove cluster labels:" "C2ORF49 MUTATED"       
clus
  C2ORF49 MUTATED C2ORF49 WILD-TYPE 
                2               265 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3492 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510        TCGA-AA-3511 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662        TCGA-AA-3663 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713        TCGA-AD-5900 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889        TCGA-AD-6890 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901        TCGA-AD-6963 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687        TCGA-AF-2693 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-A01W 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02N 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779        TCGA-AU-6004 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6386        TCGA-AZ-4315 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-4323        TCGA-AZ-4616        TCGA-AZ-4681        TCGA-AZ-4682 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CA-6716        TCGA-CA-6717        TCGA-CA-6718        TCGA-CA-6719 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6622 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948        TCGA-CK-4950 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913        TCGA-CK-5914 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917        TCGA-CL-5918 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-5538 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541        TCGA-D5-6529 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6535 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538        TCGA-D5-6539 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898        TCGA-D5-6920 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924        TCGA-D5-6926 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929        TCGA-D5-6930 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000        TCGA-DC-5337 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28C 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G        TCGA-DM-A28H 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G5-6641 
"C2ORF49 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF49 MUTATED        0      2      2
  C2ORF49 WILD-TYPE     89    158    136
D2141V5, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF49 MUTATED        2      2      0
  C2ORF49 WILD-TYPE    180    131     72
D2141V6, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF49 MUTATED        0      1      1      3
  C2ORF49 WILD-TYPE    112     95     91    183
D2141V7, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               1                95
  CLUS_3               1                91
  CLUS_4               3               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C2ORF49 MUTATED        0      0      2      0      0      0      3
  C2ORF49 WILD-TYPE     60     50     47     40     63    125     96
D2141V8, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF49 MUTATED        1      1      0      3
  C2ORF49 WILD-TYPE    129     77     68    193
D2141V9, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               1               129
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C2ORF49 MUTATED        1      1      2      0      0      0      0      1
  C2ORF49 WILD-TYPE     39     61     26     80     69     48     43     27
                   vv
clus                CLUS_9
  C2ORF49 MUTATED        0
  C2ORF49 WILD-TYPE     74
D2141V10, multiclass
        clus
vv       C2ORF49 MUTATED C2ORF49 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               1                61
  CLUS_3               2                26
  CLUS_4               0                80
  CLUS_5               0                69
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF49 MUTATED        1      0      0      0
  C2ORF49 WILD-TYPE     32     31     27     19
D2141V11, multiclass
[1] "Remove cluster labels:" "C2ORF49 MUTATED"       
clus
  C2ORF49 MUTATED C2ORF49 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G5-6641 
"C2ORF49 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF49 MUTATED        1      0      0      0
  C2ORF49 WILD-TYPE     53     10     24     22
D2141V12, multiclass
[1] "Remove cluster labels:" "C2ORF49 MUTATED"       
clus
  C2ORF49 MUTATED C2ORF49 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6782        TCGA-AA-3489        TCGA-AA-3511 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6901 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" "C2ORF49 WILD-TYPE" 
       TCGA-G5-6641 
"C2ORF49 WILD-TYPE" 

Clustering(2142) Variable = ATG4D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG4D MUTATED        2      0      2      1
  ATG4D WILD-TYPE     44     58     62     42
D2142V1, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             2              62
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG4D MUTATED        2      1      2
  ATG4D WILD-TYPE     49     82     75
D2142V2, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG4D MUTATED        9      2      1      0
  ATG4D WILD-TYPE    169    181    100     20
D2142V3, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG4D MUTATED        2      1      4
  ATG4D WILD-TYPE     85     79     96
D2142V4, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG4D MUTATED        4      2      6
  ATG4D WILD-TYPE     85    158    132
D2142V5, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             4              85
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG4D MUTATED        6      2      4
  ATG4D WILD-TYPE    176    131     68
D2142V6, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             6             176
  CLUS_2             2             131
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG4D MUTATED        0      4      3      5
  ATG4D WILD-TYPE    112     92     89    181
D2142V7, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATG4D MUTATED        1      0      5      1      1      2      2
  ATG4D WILD-TYPE     59     50     44     39     62    123     97
D2142V8, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG4D MUTATED        5      1      0      6
  ATG4D WILD-TYPE    125     77     68    190
D2142V9, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             5             125
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ATG4D MUTATED        1      3      0      0      3      1      2      1
  ATG4D WILD-TYPE     39     59     28     80     66     47     41     27
                 vv
clus              CLUS_9
  ATG4D MUTATED        1
  ATG4D WILD-TYPE     73
D2142V10, multiclass
        clus
vv       ATG4D MUTATED ATG4D WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG4D MUTATED        0      1      0      1
  ATG4D WILD-TYPE     33     30     27     18
D2142V11, multiclass
[1] "Remove cluster labels:" "ATG4D MUTATED"         
clus
  ATG4D MUTATED ATG4D WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG4D MUTATED        2      0      0      0
  ATG4D WILD-TYPE     52     10     24     22
D2142V12, multiclass
[1] "Remove cluster labels:" "ATG4D MUTATED"         
clus
  ATG4D MUTATED ATG4D WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F4-6805      TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F5-6464      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G5-6235      TCGA-G5-6641 
"ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" "ATG4D WILD-TYPE" 

Clustering(2143) Variable = MUS81 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUS81 MUTATED        1      0      0      0
  MUS81 WILD-TYPE     45     58     64     43
D2143V1, multiclass
[1] "Remove cluster labels:" "MUS81 MUTATED"         
clus
  MUS81 MUTATED MUS81 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUS81 MUTATED        1      0      0
  MUS81 WILD-TYPE     50     83     77
D2143V2, multiclass
[1] "Remove cluster labels:" "MUS81 MUTATED"         
clus
  MUS81 MUTATED MUS81 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUS81 MUTATED        6      1      0      0
  MUS81 WILD-TYPE    172    182    101     20
D2143V3, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUS81 MUTATED        0      0      6
  MUS81 WILD-TYPE     87     80     94
D2143V4, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             0              80
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUS81 MUTATED        0      5      0
  MUS81 WILD-TYPE     89    155    138
D2143V5, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             5             155
  CLUS_3             0             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUS81 MUTATED        2      3      0
  MUS81 WILD-TYPE    180    130     72
D2143V6, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUS81 MUTATED        1      5      0      1
  MUS81 WILD-TYPE    111     91     92    185
D2143V7, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             0              92
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUS81 MUTATED        1      0      4      1      0      0      1
  MUS81 WILD-TYPE     59     50     45     39     63    125     98
D2143V8, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             4              45
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUS81 MUTATED        6      0      0      1
  MUS81 WILD-TYPE    124     78     68    195
D2143V9, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MUS81 MUTATED        3      1      1      0      1      0      0      1
  MUS81 WILD-TYPE     37     61     27     80     68     48     43     27
                 vv
clus              CLUS_9
  MUS81 MUTATED        0
  MUS81 WILD-TYPE     74
D2143V10, multiclass
        clus
vv       MUS81 MUTATED MUS81 WILD-TYPE
  CLUS_1             3              37
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUS81 MUTATED        0      0      0      1
  MUS81 WILD-TYPE     33     31     27     18
D2143V11, multiclass
[1] "Remove cluster labels:" "MUS81 MUTATED"         
clus
  MUS81 MUTATED MUS81 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-G5-6641 
"MUS81 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUS81 MUTATED        0      0      1      0
  MUS81 WILD-TYPE     54     10     23     22
D2143V12, multiclass
[1] "Remove cluster labels:" "MUS81 MUTATED"         
clus
  MUS81 MUTATED MUS81 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" "MUS81 WILD-TYPE" 
     TCGA-G5-6641 
"MUS81 WILD-TYPE" 

Clustering(2144) Variable = AKT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        2      0      0      0
  AKT1 WILD-TYPE     44     58     64     43
D2144V1, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AY-4071 
"AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        2      0      0
  AKT1 WILD-TYPE     49     83     77
D2144V2, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3517 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-AY-4071 
"AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        8      2      1      0
  AKT1 WILD-TYPE    170    181    100     20
D2144V3, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            2            181
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        2      1      6
  AKT1 WILD-TYPE     85     79     94
D2144V4, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            1             79
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        3      3      3
  AKT1 WILD-TYPE     86    157    135
D2144V5, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            3            157
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        3      3      3
  AKT1 WILD-TYPE    179    130     69
D2144V6, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        3      5      1      2
  AKT1 WILD-TYPE    109     91     91    184
D2144V7, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            5             91
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKT1 MUTATED        3      1      4      1      0      0      2
  AKT1 WILD-TYPE     57     49     45     39     63    125     97
D2144V8, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        4      3      1      3
  AKT1 WILD-TYPE    126     75     67    193
D2144V9, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AKT1 MUTATED        1      1      1      0      5      1      2      0      0
  AKT1 WILD-TYPE     39     61     27     80     64     47     41     28     74
D2144V10, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            1             47
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        2      0      1      1
  AKT1 WILD-TYPE     31     31     26     18
D2144V11, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            1             26
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        2      0      1      1
  AKT1 WILD-TYPE     52     10     23     21
D2144V12, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2145) Variable = OGFRL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        0      0      1      4
  OGFRL1 WILD-TYPE     46     58     63     39
D2145V1, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        2      0      3
  OGFRL1 WILD-TYPE     49     83     74
D2145V2, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              0               83
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        9      0      1      0
  OGFRL1 WILD-TYPE    169    183    100     20
D2145V3, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              9              169
  CLUS_2              0              183
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        2      0      3
  OGFRL1 WILD-TYPE     85     80     97
D2145V4, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              3               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        1      5      4
  OGFRL1 WILD-TYPE     88    155    134
D2145V5, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              5              155
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        6      3      1
  OGFRL1 WILD-TYPE    176    130     71
D2145V6, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              6              176
  CLUS_2              3              130
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        0      3      2      5
  OGFRL1 WILD-TYPE    112     93     90    181
D2145V7, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OGFRL1 MUTATED        1      0      3      2      0      0      4
  OGFRL1 WILD-TYPE     59     50     46     38     63    125     95
D2145V8, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        3      1      1      4
  OGFRL1 WILD-TYPE    127     77     67    192
D2145V9, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              1               77
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OGFRL1 MUTATED        1      3      0      0      3      0      0      0
  OGFRL1 WILD-TYPE     39     59     28     80     66     48     43     28
                  vv
clus               CLUS_9
  OGFRL1 MUTATED        2
  OGFRL1 WILD-TYPE     72
D2145V10, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              3               66
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        0      0      0      2
  OGFRL1 WILD-TYPE     33     31     27     17
D2145V11, multiclass
[1] "Remove cluster labels:" "OGFRL1 MUTATED"        
clus
  OGFRL1 MUTATED OGFRL1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        2      0      0      0
  OGFRL1 WILD-TYPE     52     10     24     22
D2145V12, multiclass
[1] "Remove cluster labels:" "OGFRL1 MUTATED"        
clus
  OGFRL1 MUTATED OGFRL1 WILD-TYPE 
               2              108 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-6548       TCGA-AD-6889       TCGA-AD-6901 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965       TCGA-AF-2687 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672       TCGA-AG-3731 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547       TCGA-AH-6549 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323       TCGA-AZ-4616 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600       TCGA-AZ-6601 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607       TCGA-CA-6719 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CI-6619       TCGA-CI-6620       TCGA-CI-6621       TCGA-CI-6624 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CK-5916       TCGA-CK-6748       TCGA-CL-5918       TCGA-CM-5860 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CM-6167       TCGA-CM-6674       TCGA-CM-6676       TCGA-CM-6677 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-CM-6678       TCGA-CM-6679       TCGA-CM-6680       TCGA-D5-5537 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536       TCGA-D5-6922 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869       TCGA-DC-6157 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682       TCGA-DC-6683 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0       TCGA-DM-A1D7 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA       TCGA-DM-A1HA 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F       TCGA-DY-A1DC 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8       TCGA-EI-6506 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460       TCGA-F4-6569 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805       TCGA-F4-6807 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464       TCGA-F5-6465 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811       TCGA-F5-6812 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306       TCGA-G4-6309 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 
      TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235       TCGA-G5-6641 
"OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" "OGFRL1 WILD-TYPE" 

Clustering(2146) Variable = VPS72 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS72 MUTATED        0      0      0      1
  VPS72 WILD-TYPE     46     58     64     42
D2146V1, multiclass
[1] "Remove cluster labels:" "VPS72 MUTATED"         
clus
  VPS72 MUTATED VPS72 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS72 MUTATED        1      0      0
  VPS72 WILD-TYPE     50     83     77
D2146V2, multiclass
[1] "Remove cluster labels:" "VPS72 MUTATED"         
clus
  VPS72 MUTATED VPS72 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS72 MUTATED        7      0      1      0
  VPS72 WILD-TYPE    171    183    100     20
D2146V3, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS72 MUTATED        3      0      4
  VPS72 WILD-TYPE     84     80     96
D2146V4, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS72 MUTATED        2      3      3
  VPS72 WILD-TYPE     87    157    135
D2146V5, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS72 MUTATED        2      3      3
  VPS72 WILD-TYPE    180    130     69
D2146V6, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             3             130
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS72 MUTATED        0      4      3      1
  VPS72 WILD-TYPE    112     92     89    185
D2146V7, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  VPS72 MUTATED        0      0      5      1      1      0      1
  VPS72 WILD-TYPE     60     50     44     39     62    125     98
D2146V8, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS72 MUTATED        5      0      0      3
  VPS72 WILD-TYPE    125     78     68    193
D2146V9, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             0              78
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  VPS72 MUTATED        1      2      0      1      4      0      0      0
  VPS72 WILD-TYPE     39     60     28     79     65     48     43     28
                 vv
clus              CLUS_9
  VPS72 MUTATED        0
  VPS72 WILD-TYPE     74
D2146V10, multiclass
        clus
vv       VPS72 MUTATED VPS72 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS72 MUTATED        0      0      0      2
  VPS72 WILD-TYPE     33     31     27     17
D2146V11, multiclass
[1] "Remove cluster labels:" "VPS72 MUTATED"         
clus
  VPS72 MUTATED VPS72 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS72 MUTATED        1      0      1      0
  VPS72 WILD-TYPE     53     10     23     22
D2146V12, multiclass
[1] "Remove cluster labels:" "VPS72 MUTATED"         
clus
  VPS72 MUTATED VPS72 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" "VPS72 WILD-TYPE" 

Clustering(2147) Variable = ALG9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG9 MUTATED        1      0      0      1
  ALG9 WILD-TYPE     45     58     64     42
D2147V1, multiclass
[1] "Remove cluster labels:" "ALG9 MUTATED"          
clus
  ALG9 MUTATED ALG9 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AY-4071 
"ALG9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG9 MUTATED        1      0      1
  ALG9 WILD-TYPE     50     83     76
D2147V2, multiclass
[1] "Remove cluster labels:" "ALG9 MUTATED"          
clus
  ALG9 MUTATED ALG9 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3812 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3893 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AY-4071 
"ALG9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG9 MUTATED        3      1      0      0
  ALG9 WILD-TYPE    175    182    101     20
D2147V3, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            3            175
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG9 MUTATED        1      0      1
  ALG9 WILD-TYPE     86     80     99
D2147V4, multiclass
[1] "Remove cluster labels:" "ALG9 MUTATED"          
clus
  ALG9 MUTATED ALG9 WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3502     TCGA-AA-3510     TCGA-AA-3511 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662     TCGA-AA-3663 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713     TCGA-AD-5900 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889     TCGA-AD-6890 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AD-6895     TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AD-6964     TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AF-4110     TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-3779     TCGA-AY-5543 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386     TCGA-AZ-4315 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681     TCGA-AZ-4682 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6622 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948     TCGA-CK-4950 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913     TCGA-CK-5914 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917     TCGA-CL-5918 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" "ALG9 WILD-TYPE" 
    TCGA-G5-6641 
"ALG9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG9 MUTATED        1      1      1
  ALG9 WILD-TYPE     88    159    137
D2147V5, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            1            159
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ALG9 MUTATED        2      0      1
  ALG9 WILD-TYPE    180    133     71
D2147V6, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            0            133
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG9 MUTATED        0      0      2      2
  ALG9 WILD-TYPE    112     96     90    184
D2147V7, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            2             90
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ALG9 MUTATED        0      1      1      0      0      0      2
  ALG9 WILD-TYPE     60     49     48     40     63    125     97
D2147V8, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            1             48
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG9 MUTATED        2      0      0      2
  ALG9 WILD-TYPE    128     78     68    194
D2147V9, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ALG9 MUTATED        0      1      1      1      1      0      0      0      0
  ALG9 WILD-TYPE     40     61     27     79     68     48     43     28     74
D2147V10, multiclass
        clus
vv       ALG9 MUTATED ALG9 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG9 MUTATED        0      0      0      0
  ALG9 WILD-TYPE     33     31     27     19
D2147V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG9 MUTATED        0      0      0      0
  ALG9 WILD-TYPE     54     10     24     22
D2147V12, multiclass

Clustering(2148) Variable = TAX1BP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        0      0      1      3
  TAX1BP1 WILD-TYPE     46     58     63     40
D2148V1, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        1      2      1
  TAX1BP1 WILD-TYPE     50     81     76
D2148V2, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED       13      1      0      0
  TAX1BP1 WILD-TYPE    165    182    101     20
D2148V3, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1              13               165
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        3      0      7
  TAX1BP1 WILD-TYPE     84     80     93
D2148V4, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               3                84
  CLUS_2               0                80
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        1      4      7
  TAX1BP1 WILD-TYPE     88    156    131
D2148V5, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               4               156
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAX1BP1 MUTATED        6      5      1
  TAX1BP1 WILD-TYPE    176    128     71
D2148V6, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               6               176
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        1      5      4      4
  TAX1BP1 WILD-TYPE    111     91     88    182
D2148V7, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               5                91
  CLUS_3               4                88
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TAX1BP1 MUTATED        1      1      9      0      0      1      2
  TAX1BP1 WILD-TYPE     59     49     40     40     63    124     97
D2148V8, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               9                40
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               1               124
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        8      1      1      4
  TAX1BP1 WILD-TYPE    122     77     67    192
D2148V9, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               8               122
  CLUS_2               1                77
  CLUS_3               1                67
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TAX1BP1 MUTATED        1      3      1      0      7      1      0      0
  TAX1BP1 WILD-TYPE     39     59     27     80     62     47     43     28
                   vv
clus                CLUS_9
  TAX1BP1 MUTATED        1
  TAX1BP1 WILD-TYPE     73
D2148V10, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               0                80
  CLUS_5               7                62
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        1      0      0      3
  TAX1BP1 WILD-TYPE     32     31     27     16
D2148V11, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAX1BP1 MUTATED        2      0      1      1
  TAX1BP1 WILD-TYPE     52     10     23     21
D2148V12, multiclass
        clus
vv       TAX1BP1 MUTATED TAX1BP1 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2149) Variable = MAGEB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEB2 MUTATED        2      1      0      0
  MAGEB2 WILD-TYPE     44     57     64     43
D2149V1, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEB2 MUTATED        1      2      0
  MAGEB2 WILD-TYPE     50     81     77
D2149V2, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              2               81
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEB2 MUTATED        7      5      1      1
  MAGEB2 WILD-TYPE    171    178    100     19
D2149V3, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              5              178
  CLUS_3              1              100
  CLUS_4              1               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEB2 MUTATED        7      2      2
  MAGEB2 WILD-TYPE     80     78     98
D2149V4, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              7               80
  CLUS_2              2               78
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEB2 MUTATED        1      4      8
  MAGEB2 WILD-TYPE     88    156    130
D2149V5, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              156
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEB2 MUTATED        8      4      1
  MAGEB2 WILD-TYPE    174    129     71
D2149V6, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              4              129
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEB2 MUTATED        3      4      4      3
  MAGEB2 WILD-TYPE    109     92     88    183
D2149V7, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              4               92
  CLUS_3              4               88
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MAGEB2 MUTATED        2      2      2      1      4      2      1
  MAGEB2 WILD-TYPE     58     48     47     39     59    123     98
D2149V8, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              2               48
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              4               59
  CLUS_6              2              123
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEB2 MUTATED        3      3      3      5
  MAGEB2 WILD-TYPE    127     75     65    191
D2149V9, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              3              127
  CLUS_2              3               75
  CLUS_3              3               65
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  MAGEB2 MUTATED        2      2      1      1      3      2      2      0
  MAGEB2 WILD-TYPE     38     60     27     79     66     46     41     28
                  vv
clus               CLUS_9
  MAGEB2 MUTATED        1
  MAGEB2 WILD-TYPE     73
D2149V10, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              2               38
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              3               66
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEB2 MUTATED        1      2      0      1
  MAGEB2 WILD-TYPE     32     29     27     18
D2149V11, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               29
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEB2 MUTATED        1      0      1      2
  MAGEB2 WILD-TYPE     53     10     23     20
D2149V12, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              2               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2150) Variable = SLCO6A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO6A1 MUTATED        5      1      1      3
  SLCO6A1 WILD-TYPE     41     57     63     40
D2150V1, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                57
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO6A1 MUTATED        6      2      2
  SLCO6A1 WILD-TYPE     45     81     75
D2150V2, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               6                45
  CLUS_2               2                81
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO6A1 MUTATED       16      9      2      1
  SLCO6A1 WILD-TYPE    162    174     99     19
D2150V3, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1              16               162
  CLUS_2               9               174
  CLUS_3               2                99
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO6A1 MUTATED        5      5      8
  SLCO6A1 WILD-TYPE     82     75     92
D2150V4, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               5                75
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO6A1 MUTATED        1      9     13
  SLCO6A1 WILD-TYPE     88    151    125
D2150V5, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               9               151
  CLUS_3              13               125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLCO6A1 MUTATED       14      7      2
  SLCO6A1 WILD-TYPE    168    126     70
D2150V6, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1              14               168
  CLUS_2               7               126
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO6A1 MUTATED        6      5      6     11
  SLCO6A1 WILD-TYPE    106     91     86    175
D2150V7, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               6               106
  CLUS_2               5                91
  CLUS_3               6                86
  CLUS_4              11               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLCO6A1 MUTATED        5      4      4      0      3      4      8
  SLCO6A1 WILD-TYPE     55     46     45     40     60    121     91
D2150V8, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               5                55
  CLUS_2               4                46
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               3                60
  CLUS_6               4               121
  CLUS_7               8                91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO6A1 MUTATED        6      4      3     13
  SLCO6A1 WILD-TYPE    124     74     65    183
D2150V9, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               4                74
  CLUS_3               3                65
  CLUS_4              13               183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLCO6A1 MUTATED        0      4      5      5      6      1      2      1
  SLCO6A1 WILD-TYPE     40     58     23     75     63     47     41     27
                   vv
clus                CLUS_9
  SLCO6A1 MUTATED        2
  SLCO6A1 WILD-TYPE     72
D2150V10, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                58
  CLUS_3               5                23
  CLUS_4               5                75
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               2                41
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO6A1 MUTATED        3      2      3      1
  SLCO6A1 WILD-TYPE     30     29     24     18
D2150V11, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               2                29
  CLUS_3               3                24
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLCO6A1 MUTATED        4      1      2      2
  SLCO6A1 WILD-TYPE     50      9     22     20
D2150V12, multiclass
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CLUS_1               4                50
  CLUS_2               1                 9
  CLUS_3               2                22
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2151) Variable = HIST1H3B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H3B MUTATED        0      0      0      1
  HIST1H3B WILD-TYPE     46     58     64     42
D2151V1, multiclass
[1] "Remove cluster labels:" "HIST1H3B MUTATED"      
clus
  HIST1H3B MUTATED HIST1H3B WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H3B MUTATED        1      0      0
  HIST1H3B WILD-TYPE     50     83     77
D2151V2, multiclass
[1] "Remove cluster labels:" "HIST1H3B MUTATED"      
clus
  HIST1H3B MUTATED HIST1H3B WILD-TYPE 
                 1                210 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3977 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3979         TCGA-AA-3980         TCGA-AA-3982 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01Q         TCGA-AA-A024 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02W         TCGA-AF-2689 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3881 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3882         TCGA-AG-3883         TCGA-AG-3885 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3890         TCGA-AG-3892 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3896 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3898         TCGA-AG-3901         TCGA-AG-3902 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3909         TCGA-AG-3999         TCGA-AG-4001 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-A002         TCGA-AG-A008 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A025 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02X 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-A032         TCGA-AY-4070         TCGA-AY-4071 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H3B MUTATED        3      0      1      0
  HIST1H3B WILD-TYPE    175    183    100     20
D2151V3, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                3                175
  CLUS_2                0                183
  CLUS_3                1                100
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H3B MUTATED        0      1      2
  HIST1H3B WILD-TYPE     87     79     98
D2151V4, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                0                 87
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H3B MUTATED        2      1      1
  HIST1H3B WILD-TYPE     87    159    137
D2151V5, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                1                159
  CLUS_3                1                137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H3B MUTATED        2      1      1
  HIST1H3B WILD-TYPE    180    132     71
D2151V6, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                2                180
  CLUS_2                1                132
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H3B MUTATED        1      1      1      1
  HIST1H3B WILD-TYPE    111     95     91    185
D2151V7, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                1                111
  CLUS_2                1                 95
  CLUS_3                1                 91
  CLUS_4                1                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIST1H3B MUTATED        1      0      2      0      0      0      1
  HIST1H3B WILD-TYPE     59     50     47     40     63    125     98
D2151V8, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H3B MUTATED        1      0      1      2
  HIST1H3B WILD-TYPE    129     78     67    194
D2151V9, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                1                129
  CLUS_2                0                 78
  CLUS_3                1                 67
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  HIST1H3B MUTATED        0      1      1      0      2      0      0      0
  HIST1H3B WILD-TYPE     40     61     27     80     67     48     43     28
                    vv
clus                 CLUS_9
  HIST1H3B MUTATED        0
  HIST1H3B WILD-TYPE     74
D2151V10, multiclass
        clus
vv       HIST1H3B MUTATED HIST1H3B WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                2                 67
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H3B MUTATED        0      0      0      1
  HIST1H3B WILD-TYPE     33     31     27     18
D2151V11, multiclass
[1] "Remove cluster labels:" "HIST1H3B MUTATED"      
clus
  HIST1H3B MUTATED HIST1H3B WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H3B WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H3B MUTATED        1      0      0      0
  HIST1H3B WILD-TYPE     53     10     24     22
D2151V12, multiclass
[1] "Remove cluster labels:" "HIST1H3B MUTATED"      
clus
  HIST1H3B MUTATED HIST1H3B WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-6748         TCGA-CL-5918 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CM-5860         TCGA-CM-6167         TCGA-CM-6674 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CM-6676         TCGA-CM-6677         TCGA-CM-6678 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-CM-6679         TCGA-CM-6680         TCGA-D5-5537 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6536 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" "HIST1H3B WILD-TYPE" 
        TCGA-G5-6641 
"HIST1H3B WILD-TYPE" 

Clustering(2152) Variable = TBCE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBCE MUTATED        2      0      0      1
  TBCE WILD-TYPE     44     58     64     42
D2152V1, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBCE MUTATED        1      1      1
  TBCE WILD-TYPE     50     82     76
D2152V2, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            1             50
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBCE MUTATED        2      0      0      1
  TBCE WILD-TYPE    176    183    101     19
D2152V3, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            2            176
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            1             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBCE MUTATED        0      0      0
  TBCE WILD-TYPE     87     80    100
D2152V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBCE MUTATED        0      1      0
  TBCE WILD-TYPE     89    159    138
D2152V5, multiclass
[1] "Remove cluster labels:" "TBCE MUTATED"          
clus
  TBCE MUTATED TBCE WILD-TYPE 
             1            386 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900     TCGA-AD-6548 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965     TCGA-AF-2689 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654     TCGA-AF-6136 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574     TCGA-AG-3578 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731     TCGA-AG-3742 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3885 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6928     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6588     TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G5-6235     TCGA-G5-6641 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBCE MUTATED        0      1      0
  TBCE WILD-TYPE    182    132     72
D2152V6, multiclass
[1] "Remove cluster labels:" "TBCE MUTATED"          
clus
  TBCE MUTATED TBCE WILD-TYPE 
             1            386 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3510     TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3525     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A02K     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AD-5900     TCGA-AD-6548 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AD-6889     TCGA-AD-6899     TCGA-AD-6965     TCGA-AF-2689 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AF-5654     TCGA-AF-6136 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3574     TCGA-AG-3578 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3584     TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3601     TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3727     TCGA-AG-3731     TCGA-AG-3742 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3885 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AU-6004     TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AY-6386     TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AZ-4682     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CI-6621     TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CK-6747     TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-D5-6928     TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-EI-6508     TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F4-6809     TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6307     TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6317     TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G4-6588     TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" "TBCE WILD-TYPE" 
    TCGA-G5-6235     TCGA-G5-6641 
"TBCE WILD-TYPE" "TBCE WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBCE MUTATED        0      0      0      3
  TBCE WILD-TYPE    112     96     92    183
D2152V7, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            0            112
  CLUS_2            0             96
  CLUS_3            0             92
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TBCE MUTATED        0      0      0      0      0      1      2
  TBCE WILD-TYPE     60     50     49     40     63    124     97
D2152V8, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            0             60
  CLUS_2            0             50
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBCE MUTATED        0      0      0      3
  TBCE WILD-TYPE    130     78     68    193
D2152V9, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            0            130
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TBCE MUTATED        0      0      0      1      2      0      0      0      0
  TBCE WILD-TYPE     40     62     28     79     67     48     43     28     74
D2152V10, multiclass
        clus
vv       TBCE MUTATED TBCE WILD-TYPE
  CLUS_1            0             40
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBCE MUTATED        0      0      0      0
  TBCE WILD-TYPE     33     31     27     19
D2152V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBCE MUTATED        0      0      0      0
  TBCE WILD-TYPE     54     10     24     22
D2152V12, multiclass

Clustering(2153) Variable = GLTPD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        0      0      0      1
  GLTPD2 WILD-TYPE     46     58     64     42
D2153V1, multiclass
[1] "Remove cluster labels:" "GLTPD2 MUTATED"        
clus
  GLTPD2 MUTATED GLTPD2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD2 MUTATED        0      1      0
  GLTPD2 WILD-TYPE     51     82     77
D2153V2, multiclass
[1] "Remove cluster labels:" "GLTPD2 MUTATED"        
clus
  GLTPD2 MUTATED GLTPD2 WILD-TYPE 
               1              210 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3968       TCGA-AA-3971       TCGA-AA-3972 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3973       TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017       TCGA-AA-A01D 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3574       TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3586       TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3598       TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3602       TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3611       TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3878       TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3885       TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-3901       TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-4015       TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"GLTPD2 WILD-TYPE" "GLTPD2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        4      0      0      0
  GLTPD2 WILD-TYPE    174    183    101     20
D2153V3, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD2 MUTATED        1      0      2
  GLTPD2 WILD-TYPE     86     80     98
D2153V4, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD2 MUTATED        0      3      0
  GLTPD2 WILD-TYPE     89    157    138
D2153V5, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              3              157
  CLUS_3              0              138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD2 MUTATED        0      3      0
  GLTPD2 WILD-TYPE    182    130     72
D2153V6, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              0              182
  CLUS_2              3              130
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        0      2      0      2
  GLTPD2 WILD-TYPE    112     94     92    184
D2153V7, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              2               94
  CLUS_3              0               92
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLTPD2 MUTATED        0      1      1      0      0      0      2
  GLTPD2 WILD-TYPE     60     49     48     40     63    125     97
D2153V8, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              1               48
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              0              125
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        2      0      0      2
  GLTPD2 WILD-TYPE    128     78     68    194
D2153V9, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              0               78
  CLUS_3              0               68
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GLTPD2 MUTATED        0      0      1      1      1      0      0      0
  GLTPD2 WILD-TYPE     40     62     27     79     68     48     43     28
                  vv
clus               CLUS_9
  GLTPD2 MUTATED        1
  GLTPD2 WILD-TYPE     73
D2153V10, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              0               62
  CLUS_3              1               27
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        0      0      0      0
  GLTPD2 WILD-TYPE     33     31     27     19
D2153V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        0      0      0      0
  GLTPD2 WILD-TYPE     54     10     24     22
D2153V12, multiclass

Clustering(2154) Variable = KIAA0922 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        5      0      0      4
  KIAA0922 WILD-TYPE     41     58     64     39
D2154V1, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                0                 58
  CLUS_3                0                 64
  CLUS_4                4                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0922 MUTATED        5      2      2
  KIAA0922 WILD-TYPE     46     81     75
D2154V2, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                5                 46
  CLUS_2                2                 81
  CLUS_3                2                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED       15      3      2      0
  KIAA0922 WILD-TYPE    163    180     99     20
D2154V3, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1               15                163
  CLUS_2                3                180
  CLUS_3                2                 99
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0922 MUTATED        4      2      5
  KIAA0922 WILD-TYPE     83     78     95
D2154V4, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                4                 83
  CLUS_2                2                 78
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0922 MUTATED        2      5      8
  KIAA0922 WILD-TYPE     87    155    130
D2154V5, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                2                 87
  CLUS_2                5                155
  CLUS_3                8                130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0922 MUTATED        7      5      3
  KIAA0922 WILD-TYPE    175    128     69
D2154V6, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                7                175
  CLUS_2                5                128
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        3      6      2     10
  KIAA0922 WILD-TYPE    109     90     90    176
D2154V7, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                3                109
  CLUS_2                6                 90
  CLUS_3                2                 90
  CLUS_4               10                176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0922 MUTATED        1      2      5      1      3      1      8
  KIAA0922 WILD-TYPE     59     48     44     39     60    124     91
D2154V8, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                2                 48
  CLUS_3                5                 44
  CLUS_4                1                 39
  CLUS_5                3                 60
  CLUS_6                1                124
  CLUS_7                8                 91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        5      2      3     11
  KIAA0922 WILD-TYPE    125     76     65    185
D2154V9, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                5                125
  CLUS_2                2                 76
  CLUS_3                3                 65
  CLUS_4               11                185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KIAA0922 MUTATED        1      4      2      1      9      0      3      0
  KIAA0922 WILD-TYPE     39     58     26     79     60     48     40     28
                    vv
clus                 CLUS_9
  KIAA0922 MUTATED        1
  KIAA0922 WILD-TYPE     73
D2154V10, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                4                 58
  CLUS_3                2                 26
  CLUS_4                1                 79
  CLUS_5                9                 60
  CLUS_6                0                 48
  CLUS_7                3                 40
  CLUS_8                0                 28
  CLUS_9                1                 73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        1      1      1      1
  KIAA0922 WILD-TYPE     32     30     26     18
D2154V11, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 30
  CLUS_3                1                 26
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0922 MUTATED        1      1      0      2
  KIAA0922 WILD-TYPE     53      9     24     20
D2154V12, multiclass
        clus
vv       KIAA0922 MUTATED KIAA0922 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                1                  9
  CLUS_3                0                 24
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2155) Variable = STK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK3 MUTATED        2      0      0      0
  STK3 WILD-TYPE     44     58     64     43
D2155V1, multiclass
[1] "Remove cluster labels:" "STK3 MUTATED"          
clus
  STK3 MUTATED STK3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AY-4071 
"STK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STK3 MUTATED        2      0      0
  STK3 WILD-TYPE     49     83     77
D2155V2, multiclass
[1] "Remove cluster labels:" "STK3 MUTATED"          
clus
  STK3 MUTATED STK3 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950     TCGA-AA-3952 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966     TCGA-AA-3968 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AY-4071 
"STK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK3 MUTATED        7      1      1      0
  STK3 WILD-TYPE    171    182    100     20
D2155V3, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STK3 MUTATED        2      0      4
  STK3 WILD-TYPE     85     80     96
D2155V4, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            2             85
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STK3 MUTATED        1      5      3
  STK3 WILD-TYPE     88    155    135
D2155V5, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STK3 MUTATED        2      4      3
  STK3 WILD-TYPE    180    129     69
D2155V6, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            2            180
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK3 MUTATED        0      3      2      4
  STK3 WILD-TYPE    112     93     90    182
D2155V7, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            3             93
  CLUS_3            2             90
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STK3 MUTATED        0      3      2      0      0      0      4
  STK3 WILD-TYPE     60     47     47     40     63    125     95
D2155V8, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            3             47
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            4             95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK3 MUTATED        3      1      0      5
  STK3 WILD-TYPE    127     77     68    191
D2155V9, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            3            127
  CLUS_2            1             77
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  STK3 MUTATED        0      1      1      2      4      0      0      0      1
  STK3 WILD-TYPE     40     61     27     78     65     48     43     28     73
D2155V10, multiclass
        clus
vv       STK3 MUTATED STK3 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            2             78
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK3 MUTATED        0      0      0      2
  STK3 WILD-TYPE     33     31     27     17
D2155V11, multiclass
[1] "Remove cluster labels:" "STK3 MUTATED"          
clus
  STK3 MUTATED STK3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6719 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK3 MUTATED        1      0      1      0
  STK3 WILD-TYPE     53     10     23     22
D2155V12, multiclass
[1] "Remove cluster labels:" "STK3 MUTATED"          
clus
  STK3 MUTATED STK3 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6600     TCGA-AZ-6601 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607     TCGA-CA-6719 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6624 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CK-5916     TCGA-CK-6748     TCGA-CL-5918     TCGA-CM-5860 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676     TCGA-CM-6677 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536     TCGA-D5-6922 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869     TCGA-DC-6157 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D7 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" "STK3 WILD-TYPE" 

Clustering(2156) Variable = SLC35A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A1 MUTATED        1      0      0      1
  SLC35A1 WILD-TYPE     45     58     64     42
D2156V1, multiclass
[1] "Remove cluster labels:" "SLC35A1 MUTATED"       
clus
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AY-4071 
"SLC35A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A1 MUTATED        1      0      1
  SLC35A1 WILD-TYPE     50     83     76
D2156V2, multiclass
[1] "Remove cluster labels:" "SLC35A1 MUTATED"       
clus
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AY-4071 
"SLC35A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A1 MUTATED        2      1      0      0
  SLC35A1 WILD-TYPE    176    182    101     20
D2156V3, multiclass
        clus
vv       SLC35A1 MUTATED SLC35A1 WILD-TYPE
  CLUS_1               2               176
  CLUS_2               1               182
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A1 MUTATED        1      0      0
  SLC35A1 WILD-TYPE     86     80    100
D2156V4, multiclass
[1] "Remove cluster labels:" "SLC35A1 MUTATED"       
clus
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                1               266 
       TCGA-A6-2671        TCGA-A6-2677        TCGA-A6-3809        TCGA-A6-3810 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-4105        TCGA-A6-5656        TCGA-A6-5657        TCGA-A6-5659 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662        TCGA-A6-5664 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137        TCGA-A6-6138 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648        TCGA-A6-6649 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653        TCGA-A6-6654 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502        TCGA-AA-3510 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AA-3655        TCGA-AA-3660        TCGA-AA-3662 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3663        TCGA-AA-3697        TCGA-AA-3712        TCGA-AA-3713 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6888        TCGA-AD-6889 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AD-6890        TCGA-AD-6895        TCGA-AD-6899        TCGA-AD-6901 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-2693        TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A036        TCGA-AH-6544        TCGA-AH-6547 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644        TCGA-AU-3779 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-4681        TCGA-AZ-4682        TCGA-AZ-5403        TCGA-AZ-5407 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6598        TCGA-AZ-6599        TCGA-AZ-6600        TCGA-AZ-6601 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6606        TCGA-AZ-6607 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6608        TCGA-CA-5254        TCGA-CA-5255        TCGA-CA-5796 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CA-5797        TCGA-CA-6715        TCGA-CA-6716        TCGA-CA-6718 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6624        TCGA-CK-4947        TCGA-CK-4948 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-4950        TCGA-CK-4952        TCGA-CK-5912        TCGA-CK-5913 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5915        TCGA-CK-5916        TCGA-CK-6746 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-6747        TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5917 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-4743        TCGA-CM-4744        TCGA-CM-4746 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-4747        TCGA-CM-4752        TCGA-CM-5341        TCGA-CM-5344 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5348        TCGA-CM-5349        TCGA-CM-5860        TCGA-CM-5861 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5862        TCGA-CM-5863        TCGA-CM-5864        TCGA-CM-5868 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6161        TCGA-CM-6162        TCGA-CM-6163        TCGA-CM-6164 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6165        TCGA-CM-6166        TCGA-CM-6167        TCGA-CM-6168 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6169        TCGA-CM-6170        TCGA-CM-6171        TCGA-CM-6172 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6674        TCGA-CM-6675        TCGA-CM-6676        TCGA-CM-6677 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680        TCGA-D5-5537 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540        TCGA-D5-5541 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533        TCGA-D5-6534 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537        TCGA-D5-6538 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541        TCGA-D5-6898 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923        TCGA-D5-6924 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928        TCGA-D5-6929 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-D5-7000 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0X9        TCGA-DM-A0XD        TCGA-DM-A0XF 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D4        TCGA-DM-A1D6        TCGA-DM-A1D7 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1DB 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A1HB        TCGA-DM-A282        TCGA-DM-A285 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F        TCGA-DM-A28G 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A28H        TCGA-DM-A28K        TCGA-DT-5265        TCGA-DY-A0XA 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6809        TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6307        TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6317        TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6588        TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6641 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A1 MUTATED        0      1      1
  SLC35A1 WILD-TYPE     89    159    137
D2156V5, multiclass
[1] "Remove cluster labels:" "SLC35A1 MUTATED"       
clus
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3489        TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3510        TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3525        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3558 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02W 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6899        TCGA-AD-6965 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-5654 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3731 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3742        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CA-6716        TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6621 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918        TCGA-CM-4743 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-DC-5337 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D4 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G5-6641 
"SLC35A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC35A1 MUTATED        1      1      0
  SLC35A1 WILD-TYPE    181    132     72
D2156V6, multiclass
[1] "Remove cluster labels:" "SLC35A1 MUTATED"       
clus
  SLC35A1 MUTATED SLC35A1 WILD-TYPE 
                2               385 
       TCGA-A6-2671        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-A6-5656        TCGA-A6-5657 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-5659        TCGA-A6-5660        TCGA-A6-5661        TCGA-A6-5662 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-5664        TCGA-A6-5665        TCGA-A6-5666        TCGA-A6-6137 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6138        TCGA-A6-6141        TCGA-A6-6142        TCGA-A6-6648 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6652        TCGA-A6-6653 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6780        TCGA-A6-6781        TCGA-A6-6782 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3489        TCGA-AA-3492        TCGA-AA-3496        TCGA-AA-3502 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3510        TCGA-AA-3511        TCGA-AA-3514        TCGA-AA-3517 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521        TCGA-AA-3522 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3525        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3548        TCGA-AA-3552 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555        TCGA-AA-3558 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3655 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3697 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3712        TCGA-AA-3713        TCGA-AA-3715 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3950 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3982        TCGA-AA-3986 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00E 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02K        TCGA-AA-A02O        TCGA-AA-A02W 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AD-5900 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AD-6548        TCGA-AD-6889        TCGA-AD-6899        TCGA-AD-6965 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-2689        TCGA-AF-3400        TCGA-AF-3913        TCGA-AF-5654 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3574 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3612        TCGA-AG-3727        TCGA-AG-3731 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3742        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3893        TCGA-AG-3896        TCGA-AG-3898 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-4001        TCGA-AG-4005 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A008 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01W 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02G 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A036        TCGA-AH-6544 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AH-6547        TCGA-AH-6549        TCGA-AH-6643        TCGA-AH-6644 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AU-6004        TCGA-AY-5543        TCGA-AY-6196        TCGA-AY-6197 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AY-6386        TCGA-AZ-4315        TCGA-AZ-4323        TCGA-AZ-4616 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-4682        TCGA-AZ-5407        TCGA-AZ-6598        TCGA-AZ-6599 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6600        TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-AZ-6606        TCGA-AZ-6607        TCGA-AZ-6608        TCGA-CA-5254 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CA-5255        TCGA-CA-5796        TCGA-CA-5797        TCGA-CA-6715 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CA-6716        TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6621 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-5914        TCGA-CK-5916        TCGA-CK-6746        TCGA-CK-6747 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CK-6748        TCGA-CK-6751        TCGA-CL-5918        TCGA-CM-4743 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-4744        TCGA-CM-4746        TCGA-CM-4747        TCGA-CM-4752 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5341        TCGA-CM-5344        TCGA-CM-5348        TCGA-CM-5349 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-5861        TCGA-CM-5862        TCGA-CM-5863 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-5864        TCGA-CM-5868        TCGA-CM-6161        TCGA-CM-6162 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6163        TCGA-CM-6164        TCGA-CM-6165        TCGA-CM-6166 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6167        TCGA-CM-6168        TCGA-CM-6169        TCGA-CM-6170 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6171        TCGA-CM-6172        TCGA-CM-6674        TCGA-CM-6675 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5538        TCGA-D5-5539        TCGA-D5-5540 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-5541        TCGA-D5-6529        TCGA-D5-6532        TCGA-D5-6533 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6534        TCGA-D5-6535        TCGA-D5-6536        TCGA-D5-6537 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6538        TCGA-D5-6539        TCGA-D5-6540        TCGA-D5-6541 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6898        TCGA-D5-6920        TCGA-D5-6922        TCGA-D5-6923 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-D5-6926        TCGA-D5-6927        TCGA-D5-6928 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-D5-6930        TCGA-D5-6931        TCGA-D5-6932        TCGA-DC-5337 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6157        TCGA-DC-6158 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A0X9        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D4 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1D6        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1DB        TCGA-DM-A1HA        TCGA-DM-A1HB 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A28C        TCGA-DM-A28E        TCGA-DM-A28F 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DM-A28G        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-EF-5830        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-EI-6510        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6703        TCGA-F4-6704        TCGA-F4-6805 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6806        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F4-6854        TCGA-F4-6855        TCGA-F4-6856        TCGA-F5-6464 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-F5-6812        TCGA-F5-6813        TCGA-G4-6293        TCGA-G4-6299 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6303        TCGA-G4-6304        TCGA-G4-6306        TCGA-G4-6307 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6310        TCGA-G4-6315        TCGA-G4-6317 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6321        TCGA-G4-6323        TCGA-G4-6586        TCGA-G4-6588 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6626        TCGA-G4-6628        TCGA-G5-6235 
"SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" "SLC35A1 WILD-TYPE" 
       TCGA-G5-6641 
"SLC35A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A1 MUTATED        0      0      1      2
  SLC35A1 WILD-TYPE    112     96     91    184
D2156V7, multiclass
        clus
vv       SLC35A1 MUTATED SLC35A1 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               0                96
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC35A1 MUTATED        1      0      0      0      1      0      1
  SLC35A1 WILD-TYPE     59     50     49     40     62    125     98
D2156V8, multiclass
        clus
vv       SLC35A1 MUTATED SLC35A1 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               0                50
  CLUS_3               0                49
  CLUS_4               0                40
  CLUS_5               1                62
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A1 MUTATED        0      1      0      2
  SLC35A1 WILD-TYPE    130     77     68    194
D2156V9, multiclass
        clus
vv       SLC35A1 MUTATED SLC35A1 WILD-TYPE
  CLUS_1               0               130
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC35A1 MUTATED        0      1      0      0      1      0      0      1
  SLC35A1 WILD-TYPE     40     61     28     80     68     48     43     27
                   vv
clus                CLUS_9
  SLC35A1 MUTATED        0
  SLC35A1 WILD-TYPE     74
D2156V10, multiclass
        clus
vv       SLC35A1 MUTATED SLC35A1 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               1                61
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A1 MUTATED        0      0      0      0
  SLC35A1 WILD-TYPE     33     31     27     19
D2156V11, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC35A1 MUTATED        0      0      0      0
  SLC35A1 WILD-TYPE     54     10     24     22
D2156V12, multiclass

Clustering(2157) Variable = GLRA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLRA3 MUTATED        0      0      0      4
  GLRA3 WILD-TYPE     46     58     64     39
D2157V1, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLRA3 MUTATED        2      1      1
  GLRA3 WILD-TYPE     49     82     76
D2157V2, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLRA3 MUTATED        8      1      1      0
  GLRA3 WILD-TYPE    170    182    100     20
D2157V3, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLRA3 MUTATED        1      1      3
  GLRA3 WILD-TYPE     86     79     97
D2157V4, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             1              79
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLRA3 MUTATED        3      2      2
  GLRA3 WILD-TYPE     86    158    136
D2157V5, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLRA3 MUTATED        3      2      2
  GLRA3 WILD-TYPE    179    131     70
D2157V6, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLRA3 MUTATED        1      3      1      5
  GLRA3 WILD-TYPE    111     93     91    181
D2157V7, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GLRA3 MUTATED        0      0      2      2      1      0      5
  GLRA3 WILD-TYPE     60     50     47     38     62    125     94
D2157V8, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             2              38
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLRA3 MUTATED        3      1      1      5
  GLRA3 WILD-TYPE    127     77     67    191
D2157V9, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             5             191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GLRA3 MUTATED        2      1      2      0      3      0      1      0
  GLRA3 WILD-TYPE     38     61     26     80     66     48     42     28
                 vv
clus              CLUS_9
  GLRA3 MUTATED        1
  GLRA3 WILD-TYPE     73
D2157V10, multiclass
        clus
vv       GLRA3 MUTATED GLRA3 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             1              61
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLRA3 MUTATED        1      0      0      1
  GLRA3 WILD-TYPE     32     31     27     18
D2157V11, multiclass
[1] "Remove cluster labels:" "GLRA3 MUTATED"         
clus
  GLRA3 MUTATED GLRA3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6677 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLRA3 MUTATED        1      0      0      1
  GLRA3 WILD-TYPE     53     10     24     21
D2157V12, multiclass
[1] "Remove cluster labels:" "GLRA3 MUTATED"         
clus
  GLRA3 MUTATED GLRA3 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6677 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" "GLRA3 WILD-TYPE" 

Clustering(2158) Variable = FKBP5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP5 MUTATED        1      0      0      1
  FKBP5 WILD-TYPE     45     58     64     42
D2158V1, multiclass
[1] "Remove cluster labels:" "FKBP5 MUTATED"         
clus
  FKBP5 MUTATED FKBP5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AY-4071 
"FKBP5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP5 MUTATED        1      0      1
  FKBP5 WILD-TYPE     50     83     76
D2158V2, multiclass
[1] "Remove cluster labels:" "FKBP5 MUTATED"         
clus
  FKBP5 MUTATED FKBP5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3979 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AY-4071 
"FKBP5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP5 MUTATED        6      1      0      0
  FKBP5 WILD-TYPE    172    182    101     20
D2158V3, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP5 MUTATED        2      1      2
  FKBP5 WILD-TYPE     85     79     98
D2158V4, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             1              79
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP5 MUTATED        0      2      4
  FKBP5 WILD-TYPE     89    158    134
D2158V5, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP5 MUTATED        3      3      0
  FKBP5 WILD-TYPE    179    130     72
D2158V6, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP5 MUTATED        1      3      1      2
  FKBP5 WILD-TYPE    111     93     91    184
D2158V7, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             3              93
  CLUS_3             1              91
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FKBP5 MUTATED        1      0      3      0      2      0      1
  FKBP5 WILD-TYPE     59     50     46     40     61    125     98
D2158V8, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP5 MUTATED        3      2      0      2
  FKBP5 WILD-TYPE    127     76     68    194
D2158V9, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FKBP5 MUTATED        0      3      0      0      4      0      0      0
  FKBP5 WILD-TYPE     40     59     28     80     65     48     43     28
                 vv
clus              CLUS_9
  FKBP5 MUTATED        0
  FKBP5 WILD-TYPE     74
D2158V10, multiclass
        clus
vv       FKBP5 MUTATED FKBP5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             4              65
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP5 MUTATED        0      1      0      1
  FKBP5 WILD-TYPE     33     30     27     18
D2158V11, multiclass
[1] "Remove cluster labels:" "FKBP5 MUTATED"         
clus
  FKBP5 MUTATED FKBP5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP5 MUTATED        0      1      1      0
  FKBP5 WILD-TYPE     54      9     23     22
D2158V12, multiclass
[1] "Remove cluster labels:" "FKBP5 MUTATED"         
clus
  FKBP5 MUTATED FKBP5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6901 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6306      TCGA-G4-6309 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" "FKBP5 WILD-TYPE" 

Clustering(2159) Variable = C6ORF15 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF15 MUTATED        2      0      0      0
  C6ORF15 WILD-TYPE     44     58     64     43
D2159V1, multiclass
[1] "Remove cluster labels:" "C6ORF15 MUTATED"       
clus
  C6ORF15 MUTATED C6ORF15 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3837 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AY-4071 
"C6ORF15 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF15 MUTATED        2      0      0
  C6ORF15 WILD-TYPE     49     83     77
D2159V2, multiclass
[1] "Remove cluster labels:" "C6ORF15 MUTATED"       
clus
  C6ORF15 MUTATED C6ORF15 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3837 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AY-4071 
"C6ORF15 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF15 MUTATED        6      0      0      0
  C6ORF15 WILD-TYPE    172    183    101     20
D2159V3, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF15 MUTATED        2      0      2
  C6ORF15 WILD-TYPE     85     80     98
D2159V4, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               0                80
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF15 MUTATED        0      1      4
  C6ORF15 WILD-TYPE     89    159    134
D2159V5, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               1               159
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF15 MUTATED        3      2      0
  C6ORF15 WILD-TYPE    179    131     72
D2159V6, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               3               179
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF15 MUTATED        0      3      1      2
  C6ORF15 WILD-TYPE    112     93     91    184
D2159V7, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               1                91
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF15 MUTATED        0      1      3      0      0      0      2
  C6ORF15 WILD-TYPE     60     49     46     40     63    125     97
D2159V8, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               2                97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF15 MUTATED        2      1      0      3
  C6ORF15 WILD-TYPE    128     77     68    193
D2159V9, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               2               128
  CLUS_2               1                77
  CLUS_3               0                68
  CLUS_4               3               193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF15 MUTATED        0      2      0      0      1      0      0      2
  C6ORF15 WILD-TYPE     40     60     28     80     68     48     43     26
                   vv
clus                CLUS_9
  C6ORF15 MUTATED        1
  C6ORF15 WILD-TYPE     73
D2159V10, multiclass
        clus
vv       C6ORF15 MUTATED C6ORF15 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               2                26
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF15 MUTATED        0      0      0      1
  C6ORF15 WILD-TYPE     33     31     27     18
D2159V11, multiclass
[1] "Remove cluster labels:" "C6ORF15 MUTATED"       
clus
  C6ORF15 MUTATED C6ORF15 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-G5-6641 
"C6ORF15 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF15 MUTATED        1      0      0      0
  C6ORF15 WILD-TYPE     53     10     24     22
D2159V12, multiclass
[1] "Remove cluster labels:" "C6ORF15 MUTATED"       
clus
  C6ORF15 MUTATED C6ORF15 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" "C6ORF15 WILD-TYPE" 
       TCGA-G5-6641 
"C6ORF15 WILD-TYPE" 

Clustering(2160) Variable = ZC3H12C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12C MUTATED        5      0      1      3
  ZC3H12C WILD-TYPE     41     58     63     40
D2160V1, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               5                41
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H12C MUTATED        5      3      1
  ZC3H12C WILD-TYPE     46     80     76
D2160V2, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               5                46
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12C MUTATED       11      2      1      1
  ZC3H12C WILD-TYPE    167    181    100     19
D2160V3, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1              11               167
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               1                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H12C MUTATED        5      0      1
  ZC3H12C WILD-TYPE     82     80     99
D2160V4, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               5                82
  CLUS_2               0                80
  CLUS_3               1                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H12C MUTATED        0      4      7
  ZC3H12C WILD-TYPE     89    156    131
D2160V5, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               0                89
  CLUS_2               4               156
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H12C MUTATED        5      5      1
  ZC3H12C WILD-TYPE    177    128     71
D2160V6, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               5               177
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12C MUTATED        0      3      3      9
  ZC3H12C WILD-TYPE    112     93     89    177
D2160V7, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               3                89
  CLUS_4               9               177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H12C MUTATED        1      1      3      0      2      2      6
  ZC3H12C WILD-TYPE     59     49     46     40     61    123     93
D2160V8, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               3                46
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               2               123
  CLUS_7               6                93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12C MUTATED        2      2      0     10
  ZC3H12C WILD-TYPE    128     76     68    186
D2160V9, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               2               128
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4              10               186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZC3H12C MUTATED        0      3      1      1      5      0      1      1
  ZC3H12C WILD-TYPE     40     59     27     79     64     48     42     27
                   vv
clus                CLUS_9
  ZC3H12C MUTATED        2
  ZC3H12C WILD-TYPE     72
D2160V10, multiclass
        clus
vv       ZC3H12C MUTATED ZC3H12C WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12C MUTATED        0      0      0      1
  ZC3H12C WILD-TYPE     33     31     27     18
D2160V11, multiclass
[1] "Remove cluster labels:" "ZC3H12C MUTATED"       
clus
  ZC3H12C MUTATED ZC3H12C WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-F4-6459        TCGA-F4-6460 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-G5-6641 
"ZC3H12C WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12C MUTATED        0      0      1      0
  ZC3H12C WILD-TYPE     54     10     23     22
D2160V12, multiclass
[1] "Remove cluster labels:" "ZC3H12C MUTATED"       
clus
  ZC3H12C MUTATED ZC3H12C WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-F4-6459        TCGA-F4-6460 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" "ZC3H12C WILD-TYPE" 
       TCGA-G5-6641 
"ZC3H12C WILD-TYPE" 

Clustering(2161) Variable = IFI35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFI35 MUTATED        1      1      0      1
  IFI35 WILD-TYPE     45     57     64     42
D2161V1, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFI35 MUTATED        2      1      0
  IFI35 WILD-TYPE     49     82     77
D2161V2, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFI35 MUTATED        4      1      3      0
  IFI35 WILD-TYPE    174    182     98     20
D2161V3, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFI35 MUTATED        0      4      2
  IFI35 WILD-TYPE     87     76     98
D2161V4, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             4              76
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFI35 MUTATED        3      2      3
  IFI35 WILD-TYPE     86    158    135
D2161V5, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             2             158
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFI35 MUTATED        6      1      1
  IFI35 WILD-TYPE    176    132     71
D2161V6, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFI35 MUTATED        4      2      0      2
  IFI35 WILD-TYPE    108     94     92    184
D2161V7, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             0              92
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IFI35 MUTATED        3      1      1      0      0      1      2
  IFI35 WILD-TYPE     57     49     48     40     63    124     97
D2161V8, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFI35 MUTATED        2      0      3      2
  IFI35 WILD-TYPE    128     78     65    194
D2161V9, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             0              78
  CLUS_3             3              65
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IFI35 MUTATED        0      1      1      3      1      0      1      0
  IFI35 WILD-TYPE     40     61     27     77     68     48     42     28
                 vv
clus              CLUS_9
  IFI35 MUTATED        0
  IFI35 WILD-TYPE     74
D2161V10, multiclass
        clus
vv       IFI35 MUTATED IFI35 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFI35 MUTATED        0      0      1      0
  IFI35 WILD-TYPE     33     31     26     19
D2161V11, multiclass
[1] "Remove cluster labels:" "IFI35 MUTATED"         
clus
  IFI35 MUTATED IFI35 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-G5-6641 
"IFI35 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFI35 MUTATED        0      0      1      0
  IFI35 WILD-TYPE     54     10     23     22
D2161V12, multiclass
[1] "Remove cluster labels:" "IFI35 MUTATED"         
clus
  IFI35 MUTATED IFI35 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" "IFI35 WILD-TYPE" 
     TCGA-G5-6641 
"IFI35 WILD-TYPE" 

Clustering(2162) Variable = OR2F2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2F2 MUTATED        2      0      0      0
  OR2F2 WILD-TYPE     44     58     64     43
D2162V1, multiclass
[1] "Remove cluster labels:" "OR2F2 MUTATED"         
clus
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3968 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AY-4071 
"OR2F2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2F2 MUTATED        2      0      0
  OR2F2 WILD-TYPE     49     83     77
D2162V2, multiclass
[1] "Remove cluster labels:" "OR2F2 MUTATED"         
clus
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3930      TCGA-AA-3939 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3968 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-AY-4071 
"OR2F2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2F2 MUTATED        4      2      2      0
  OR2F2 WILD-TYPE    174    181     99     20
D2162V3, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2F2 MUTATED        5      0      1
  OR2F2 WILD-TYPE     82     80     99
D2162V4, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2F2 MUTATED        1      1      4
  OR2F2 WILD-TYPE     88    159    134
D2162V5, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2F2 MUTATED        6      0      0
  OR2F2 WILD-TYPE    176    133     72
D2162V6, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2F2 MUTATED        0      0      6      2
  OR2F2 WILD-TYPE    112     96     86    184
D2162V7, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             0              96
  CLUS_3             6              86
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR2F2 MUTATED        1      0      2      0      3      0      2
  OR2F2 WILD-TYPE     59     50     47     40     60    125     97
D2162V8, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2F2 MUTATED        1      5      0      2
  OR2F2 WILD-TYPE    129     73     68    194
D2162V9, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             5              73
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR2F2 MUTATED        0      5      0      1      1      0      0      1
  OR2F2 WILD-TYPE     40     57     28     79     68     48     43     27
                 vv
clus              CLUS_9
  OR2F2 MUTATED        0
  OR2F2 WILD-TYPE     74
D2162V10, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2F2 MUTATED        0      2      0      2
  OR2F2 WILD-TYPE     33     29     27     17
D2162V11, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              29
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2F2 MUTATED        3      0      1      0
  OR2F2 WILD-TYPE     51     10     23     22
D2162V12, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2163) Variable = SLC27A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        1      0      0      1
  SLC27A3 WILD-TYPE     45     58     64     42
D2163V1, multiclass
[1] "Remove cluster labels:" "SLC27A3 MUTATED"       
clus
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AY-4071 
"SLC27A3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        1      0      1
  SLC27A3 WILD-TYPE     50     83     76
D2163V2, multiclass
[1] "Remove cluster labels:" "SLC27A3 MUTATED"       
clus
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" "SLC27A3 WILD-TYPE" 
       TCGA-AY-4071 
"SLC27A3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        6      0      0      0
  SLC27A3 WILD-TYPE    172    183    101     20
D2163V3, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        0      0      5
  SLC27A3 WILD-TYPE     87     80     95
D2163V4, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                87
  CLUS_2               0                80
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        1      2      4
  SLC27A3 WILD-TYPE     88    158    134
D2163V5, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        4      3      0
  SLC27A3 WILD-TYPE    178    130     72
D2163V6, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        0      3      2      2
  SLC27A3 WILD-TYPE    112     93     90    184
D2163V7, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               3                93
  CLUS_3               2                90
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC27A3 MUTATED        1      1      4      0      0      0      1
  SLC27A3 WILD-TYPE     59     49     45     40     63    125     98
D2163V8, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               1                49
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        3      0      0      4
  SLC27A3 WILD-TYPE    127     78     68    192
D2163V9, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC27A3 MUTATED        0      0      0      1      5      0      1      0
  SLC27A3 WILD-TYPE     40     62     28     79     64     48     42     28
                   vv
clus                CLUS_9
  SLC27A3 MUTATED        0
  SLC27A3 WILD-TYPE     74
D2163V10, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               0                62
  CLUS_3               0                28
  CLUS_4               1                79
  CLUS_5               5                64
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        0      0      0      3
  SLC27A3 WILD-TYPE     33     31     27     16
D2163V11, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        2      0      1      0
  SLC27A3 WILD-TYPE     52     10     23     22
D2163V12, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2164) Variable = C6ORF70 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF70 MUTATED        1      0      0      2
  C6ORF70 WILD-TYPE     45     58     64     41
D2164V1, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF70 MUTATED        1      2      0
  C6ORF70 WILD-TYPE     50     81     77
D2164V2, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                81
  CLUS_3               0                77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF70 MUTATED       11      2      1      0
  C6ORF70 WILD-TYPE    167    181    100     20
D2164V3, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1              11               167
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF70 MUTATED        2      2      7
  C6ORF70 WILD-TYPE     85     78     93
D2164V4, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF70 MUTATED        3      6      3
  C6ORF70 WILD-TYPE     86    154    135
D2164V5, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               3                86
  CLUS_2               6               154
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF70 MUTATED        5      5      2
  C6ORF70 WILD-TYPE    177    128     70
D2164V6, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               5               177
  CLUS_2               5               128
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF70 MUTATED        2      6      1      5
  C6ORF70 WILD-TYPE    110     90     91    181
D2164V7, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               6                90
  CLUS_3               1                91
  CLUS_4               5               181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C6ORF70 MUTATED        2      2      4      1      0      2      3
  C6ORF70 WILD-TYPE     58     48     45     39     63    123     96
D2164V8, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               4                45
  CLUS_4               1                39
  CLUS_5               0                63
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF70 MUTATED        6      2      1      5
  C6ORF70 WILD-TYPE    124     76     67    191
D2164V9, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               6               124
  CLUS_2               2                76
  CLUS_3               1                67
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C6ORF70 MUTATED        2      2      1      2      3      0      2      0
  C6ORF70 WILD-TYPE     38     60     27     78     66     48     41     28
                   vv
clus                CLUS_9
  C6ORF70 MUTATED        2
  C6ORF70 WILD-TYPE     72
D2164V10, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                60
  CLUS_3               1                27
  CLUS_4               2                78
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               2                41
  CLUS_8               0                28
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF70 MUTATED        1      0      1      1
  C6ORF70 WILD-TYPE     32     31     26     18
D2164V11, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               1                26
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF70 MUTATED        1      0      1      1
  C6ORF70 WILD-TYPE     53     10     23     21
D2164V12, multiclass
        clus
vv       C6ORF70 MUTATED C6ORF70 WILD-TYPE
  CLUS_1               1                53
  CLUS_2               0                10
  CLUS_3               1                23
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2165) Variable = SFI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFI1 MUTATED        3      0      0      4
  SFI1 WILD-TYPE     43     58     64     39
D2165V1, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            4             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SFI1 MUTATED        4      1      2
  SFI1 WILD-TYPE     47     82     75
D2165V2, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            4             47
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFI1 MUTATED       12      0      0      0
  SFI1 WILD-TYPE    166    183    101     20
D2165V3, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SFI1 MUTATED        3      0      2
  SFI1 WILD-TYPE     84     80     98
D2165V4, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SFI1 MUTATED        1      3      4
  SFI1 WILD-TYPE     88    157    134
D2165V5, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            3            157
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SFI1 MUTATED        4      3      1
  SFI1 WILD-TYPE    178    130     71
D2165V6, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFI1 MUTATED        0      1      4      7
  SFI1 WILD-TYPE    112     95     88    179
D2165V7, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            0            112
  CLUS_2            1             95
  CLUS_3            4             88
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SFI1 MUTATED        1      0      5      0      0      0      6
  SFI1 WILD-TYPE     59     50     44     40     63    125     93
D2165V8, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            0             50
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            6             93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFI1 MUTATED        2      3      0      6
  SFI1 WILD-TYPE    128     75     68    190
D2165V9, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            6            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  SFI1 MUTATED        0      4      2      0      4      0      0      1      0
  SFI1 WILD-TYPE     40     58     26     80     65     48     43     27     74
D2165V10, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            4             58
  CLUS_3            2             26
  CLUS_4            0             80
  CLUS_5            4             65
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFI1 MUTATED        0      0      0      3
  SFI1 WILD-TYPE     33     31     27     16
D2165V11, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFI1 MUTATED        2      0      1      0
  SFI1 WILD-TYPE     52     10     23     22
D2165V12, multiclass
        clus
vv       SFI1 MUTATED SFI1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2166) Variable = ELANE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELANE MUTATED        0      0      0      1
  ELANE WILD-TYPE     46     58     64     42
D2166V1, multiclass
[1] "Remove cluster labels:" "ELANE MUTATED"         
clus
  ELANE MUTATED ELANE WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELANE MUTATED        0      1      0
  ELANE WILD-TYPE     51     82     77
D2166V2, multiclass
[1] "Remove cluster labels:" "ELANE MUTATED"         
clus
  ELANE MUTATED ELANE WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELANE MUTATED        6      1      0      0
  ELANE WILD-TYPE    172    182    101     20
D2166V3, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELANE MUTATED        3      0      3
  ELANE WILD-TYPE     84     80     97
D2166V4, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELANE MUTATED        0      3      3
  ELANE WILD-TYPE     89    157    135
D2166V5, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELANE MUTATED        3      3      0
  ELANE WILD-TYPE    179    130     72
D2166V6, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELANE MUTATED        0      4      2      1
  ELANE WILD-TYPE    112     92     90    185
D2166V7, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             0             112
  CLUS_2             4              92
  CLUS_3             2              90
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ELANE MUTATED        0      2      3      0      1      0      1
  ELANE WILD-TYPE     60     48     46     40     62    125     98
D2166V8, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELANE MUTATED        4      1      0      2
  ELANE WILD-TYPE    126     77     68    194
D2166V9, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ELANE MUTATED        0      3      2      0      1      0      0      0
  ELANE WILD-TYPE     40     59     26     80     68     48     43     28
                 vv
clus              CLUS_9
  ELANE MUTATED        1
  ELANE WILD-TYPE     73
D2166V10, multiclass
        clus
vv       ELANE MUTATED ELANE WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELANE MUTATED        0      1      0      1
  ELANE WILD-TYPE     33     30     27     18
D2166V11, multiclass
[1] "Remove cluster labels:" "ELANE MUTATED"         
clus
  ELANE MUTATED ELANE WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELANE MUTATED        2      0      0      0
  ELANE WILD-TYPE     52     10     24     22
D2166V12, multiclass
[1] "Remove cluster labels:" "ELANE MUTATED"         
clus
  ELANE MUTATED ELANE WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" "ELANE WILD-TYPE" 

Clustering(2167) Variable = QSER1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QSER1 MUTATED        3      0      0      1
  QSER1 WILD-TYPE     43     58     64     42
D2167V1, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  QSER1 MUTATED        2      1      1
  QSER1 WILD-TYPE     49     82     76
D2167V2, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QSER1 MUTATED       13      2      2      0
  QSER1 WILD-TYPE    165    181     99     20
D2167V3, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             2             181
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  QSER1 MUTATED        8      2      3
  QSER1 WILD-TYPE     79     78     97
D2167V4, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             8              79
  CLUS_2             2              78
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  QSER1 MUTATED        1      4      9
  QSER1 WILD-TYPE     88    156    129
D2167V5, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             9             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  QSER1 MUTATED        7      6      1
  QSER1 WILD-TYPE    175    127     71
D2167V6, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QSER1 MUTATED        4      2      6      5
  QSER1 WILD-TYPE    108     94     86    181
D2167V7, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             2              94
  CLUS_3             6              86
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  QSER1 MUTATED        4      1      5      1      2      1      3
  QSER1 WILD-TYPE     56     49     44     39     61    124     96
D2167V8, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             1              39
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QSER1 MUTATED        3      4      2      8
  QSER1 WILD-TYPE    127     74     66    188
D2167V9, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             4              74
  CLUS_3             2              66
  CLUS_4             8             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  QSER1 MUTATED        1      5      0      3      3      0      1      2
  QSER1 WILD-TYPE     39     57     28     77     66     48     42     26
                 vv
clus              CLUS_9
  QSER1 MUTATED        2
  QSER1 WILD-TYPE     72
D2167V10, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             5              57
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QSER1 MUTATED        1      0      1      1
  QSER1 WILD-TYPE     32     31     26     18
D2167V11, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QSER1 MUTATED        2      0      1      0
  QSER1 WILD-TYPE     52     10     23     22
D2167V12, multiclass
        clus
vv       QSER1 MUTATED QSER1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2168) Variable = DAGLB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAGLB MUTATED        2      0      0      1
  DAGLB WILD-TYPE     44     58     64     42
D2168V1, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             1              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAGLB MUTATED        1      0      2
  DAGLB WILD-TYPE     50     83     75
D2168V2, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             1              50
  CLUS_2             0              83
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAGLB MUTATED        4      1      1      0
  DAGLB WILD-TYPE    174    182    100     20
D2168V3, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAGLB MUTATED        1      0      2
  DAGLB WILD-TYPE     86     80     98
D2168V4, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAGLB MUTATED        0      3      2
  DAGLB WILD-TYPE     89    157    136
D2168V5, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             0              89
  CLUS_2             3             157
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAGLB MUTATED        1      3      1
  DAGLB WILD-TYPE    181    130     71
D2168V6, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             1             181
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAGLB MUTATED        0      1      2      3
  DAGLB WILD-TYPE    112     95     90    183
D2168V7, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DAGLB MUTATED        1      1      1      0      1      0      2
  DAGLB WILD-TYPE     59     49     48     40     62    125     97
D2168V8, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAGLB MUTATED        1      2      0      3
  DAGLB WILD-TYPE    129     76     68    193
D2168V9, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  DAGLB MUTATED        1      2      0      1      2      0      0      0
  DAGLB WILD-TYPE     39     60     28     79     67     48     43     28
                 vv
clus              CLUS_9
  DAGLB MUTATED        0
  DAGLB WILD-TYPE     74
D2168V10, multiclass
        clus
vv       DAGLB MUTATED DAGLB WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAGLB MUTATED        0      0      0      1
  DAGLB WILD-TYPE     33     31     27     18
D2168V11, multiclass
[1] "Remove cluster labels:" "DAGLB MUTATED"         
clus
  DAGLB MUTATED DAGLB WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-G5-6641 
"DAGLB WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAGLB MUTATED        1      0      0      0
  DAGLB WILD-TYPE     53     10     24     22
D2168V12, multiclass
[1] "Remove cluster labels:" "DAGLB MUTATED"         
clus
  DAGLB MUTATED DAGLB WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" "DAGLB WILD-TYPE" 
     TCGA-G5-6641 
"DAGLB WILD-TYPE" 

Clustering(2169) Variable = CXCL9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCL9 MUTATED        1      0      0      2
  CXCL9 WILD-TYPE     45     58     64     41
D2169V1, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCL9 MUTATED        1      1      1
  CXCL9 WILD-TYPE     50     82     76
D2169V2, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCL9 MUTATED        6      1      0      0
  CXCL9 WILD-TYPE    172    182    101     20
D2169V3, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCL9 MUTATED        2      0      2
  CXCL9 WILD-TYPE     85     80     98
D2169V4, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCL9 MUTATED        0      4      2
  CXCL9 WILD-TYPE     89    156    136
D2169V5, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXCL9 MUTATED        4      2      0
  CXCL9 WILD-TYPE    178    131     72
D2169V6, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCL9 MUTATED        0      2      2      3
  CXCL9 WILD-TYPE    112     94     90    183
D2169V7, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             3             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CXCL9 MUTATED        1      1      3      0      0      1      1
  CXCL9 WILD-TYPE     59     49     46     40     63    124     98
D2169V8, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             3              46
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCL9 MUTATED        1      1      1      4
  CXCL9 WILD-TYPE    129     77     67    192
D2169V9, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CXCL9 MUTATED        1      2      0      1      2      0      1      0
  CXCL9 WILD-TYPE     39     60     28     79     67     48     42     28
                 vv
clus              CLUS_9
  CXCL9 MUTATED        0
  CXCL9 WILD-TYPE     74
D2169V10, multiclass
        clus
vv       CXCL9 MUTATED CXCL9 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCL9 MUTATED        1      0      0      0
  CXCL9 WILD-TYPE     32     31     27     19
D2169V11, multiclass
[1] "Remove cluster labels:" "CXCL9 MUTATED"         
clus
  CXCL9 MUTATED CXCL9 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-G5-6641 
"CXCL9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXCL9 MUTATED        1      0      0      0
  CXCL9 WILD-TYPE     53     10     24     22
D2169V12, multiclass
[1] "Remove cluster labels:" "CXCL9 MUTATED"         
clus
  CXCL9 MUTATED CXCL9 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6676 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" "CXCL9 WILD-TYPE" 
     TCGA-G5-6641 
"CXCL9 WILD-TYPE" 

Clustering(2170) Variable = CCDC111 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC111 MUTATED        0      0      1      2
  CCDC111 WILD-TYPE     46     58     63     41
D2170V1, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               0                46
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC111 MUTATED        0      1      2
  CCDC111 WILD-TYPE     51     82     75
D2170V2, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               0                51
  CLUS_2               1                82
  CLUS_3               2                75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC111 MUTATED        6      2      1      0
  CCDC111 WILD-TYPE    172    181    100     20
D2170V3, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               6               172
  CLUS_2               2               181
  CLUS_3               1               100
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC111 MUTATED        2      1      3
  CCDC111 WILD-TYPE     85     79     97
D2170V4, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC111 MUTATED        0      5      2
  CCDC111 WILD-TYPE     89    155    136
D2170V5, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               5               155
  CLUS_3               2               136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC111 MUTATED        1      5      1
  CCDC111 WILD-TYPE    181    128     71
D2170V6, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               1               181
  CLUS_2               5               128
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC111 MUTATED        2      2      3      2
  CCDC111 WILD-TYPE    110     94     89    184
D2170V7, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CCDC111 MUTATED        1      2      2      0      2      1      1
  CCDC111 WILD-TYPE     59     48     47     40     61    124     98
D2170V8, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC111 MUTATED        3      2      0      4
  CCDC111 WILD-TYPE    127     76     68    192
D2170V9, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CCDC111 MUTATED        0      2      3      0      2      1      0      0
  CCDC111 WILD-TYPE     40     60     25     80     67     47     43     28
                   vv
clus                CLUS_9
  CCDC111 MUTATED        1
  CCDC111 WILD-TYPE     73
D2170V10, multiclass
        clus
vv       CCDC111 MUTATED CCDC111 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               3                25
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC111 MUTATED        1      0      0      1
  CCDC111 WILD-TYPE     32     31     27     18
D2170V11, multiclass
[1] "Remove cluster labels:" "CCDC111 MUTATED"       
clus
  CCDC111 MUTATED CCDC111 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC111 MUTATED        0      0      2      0
  CCDC111 WILD-TYPE     54     10     22     22
D2170V12, multiclass
[1] "Remove cluster labels:" "CCDC111 MUTATED"       
clus
  CCDC111 MUTATED CCDC111 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6901 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965        TCGA-AF-2687 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672        TCGA-AG-3731 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6549 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323        TCGA-AZ-4616 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600        TCGA-AZ-6601 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" "CCDC111 WILD-TYPE" 

Clustering(2171) Variable = FER1L6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER1L6 MUTATED        2      0      1      6
  FER1L6 WILD-TYPE     44     58     63     37
D2171V1, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              6               37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FER1L6 MUTATED        4      3      2
  FER1L6 WILD-TYPE     47     80     75
D2171V2, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER1L6 MUTATED       18      8      5      2
  FER1L6 WILD-TYPE    160    175     96     18
D2171V3, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              8              175
  CLUS_3              5               96
  CLUS_4              2               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FER1L6 MUTATED       12      5      7
  FER1L6 WILD-TYPE     75     75     93
D2171V4, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1             12               75
  CLUS_2              5               75
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FER1L6 MUTATED        6      6     16
  FER1L6 WILD-TYPE     83    154    122
D2171V5, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              6               83
  CLUS_2              6              154
  CLUS_3             16              122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FER1L6 MUTATED       17      6      5
  FER1L6 WILD-TYPE    165    127     67
D2171V6, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1             17              165
  CLUS_2              6              127
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER1L6 MUTATED        9      7      8      9
  FER1L6 WILD-TYPE    103     89     84    177
D2171V7, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              9              103
  CLUS_2              7               89
  CLUS_3              8               84
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FER1L6 MUTATED        5      5      7      3      5      3      5
  FER1L6 WILD-TYPE     55     45     42     37     58    122     94
D2171V8, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              5               55
  CLUS_2              5               45
  CLUS_3              7               42
  CLUS_4              3               37
  CLUS_5              5               58
  CLUS_6              3              122
  CLUS_7              5               94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER1L6 MUTATED        9      7      5     11
  FER1L6 WILD-TYPE    121     71     63    185
D2171V9, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              7               71
  CLUS_3              5               63
  CLUS_4             11              185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FER1L6 MUTATED        6      5      2      5      8      0      4      0
  FER1L6 WILD-TYPE     34     57     26     75     61     48     39     28
                  vv
clus               CLUS_9
  FER1L6 MUTATED        2
  FER1L6 WILD-TYPE     72
D2171V10, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              6               34
  CLUS_2              5               57
  CLUS_3              2               26
  CLUS_4              5               75
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              4               39
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER1L6 MUTATED        3      1      3      2
  FER1L6 WILD-TYPE     30     30     24     17
D2171V11, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               30
  CLUS_3              3               24
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER1L6 MUTATED        6      0      2      1
  FER1L6 WILD-TYPE     48     10     22     21
D2171V12, multiclass
        clus
vv       FER1L6 MUTATED FER1L6 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2172) Variable = NUP107 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP107 MUTATED        4      0      2      3
  NUP107 WILD-TYPE     42     58     62     40
D2172V1, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               58
  CLUS_3              2               62
  CLUS_4              3               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP107 MUTATED        4      2      3
  NUP107 WILD-TYPE     47     81     74
D2172V2, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              4               47
  CLUS_2              2               81
  CLUS_3              3               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP107 MUTATED       10      2      0      0
  NUP107 WILD-TYPE    168    181    101     20
D2172V3, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1             10              168
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP107 MUTATED        1      1      1
  NUP107 WILD-TYPE     86     79     99
D2172V4, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              1               79
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP107 MUTATED        2      4      3
  NUP107 WILD-TYPE     87    156    135
D2172V5, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              4              156
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUP107 MUTATED        5      4      0
  NUP107 WILD-TYPE    177    129     72
D2172V6, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              4              129
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP107 MUTATED        1      1      2      9
  NUP107 WILD-TYPE    111     95     90    177
D2172V7, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              9              177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP107 MUTATED        2      0      2      0      1      2      6
  NUP107 WILD-TYPE     58     50     47     40     62    123     93
D2172V8, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              0               50
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP107 MUTATED        2      1      0     10
  NUP107 WILD-TYPE    128     77     68    186
D2172V9, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4             10              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NUP107 MUTATED        0      1      1      4      6      0      0      1
  NUP107 WILD-TYPE     40     61     27     76     63     48     43     27
                  vv
clus               CLUS_9
  NUP107 MUTATED        0
  NUP107 WILD-TYPE     74
D2172V10, multiclass
        clus
vv       NUP107 MUTATED NUP107 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              4               76
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP107 MUTATED        0      0      0      0
  NUP107 WILD-TYPE     33     31     27     19
D2172V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP107 MUTATED        0      0      0      0
  NUP107 WILD-TYPE     54     10     24     22
D2172V12, multiclass

Clustering(2173) Variable = HIP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIP1 MUTATED        1      1      0      3
  HIP1 WILD-TYPE     45     57     64     40
D2173V1, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HIP1 MUTATED        2      2      1
  HIP1 WILD-TYPE     49     81     76
D2173V2, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            2             81
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIP1 MUTATED        9      3      2      0
  HIP1 WILD-TYPE    169    180     99     20
D2173V3, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            3            180
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HIP1 MUTATED        3      2      4
  HIP1 WILD-TYPE     84     78     96
D2173V4, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HIP1 MUTATED        3      7      3
  HIP1 WILD-TYPE     86    153    135
D2173V5, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            7            153
  CLUS_3            3            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HIP1 MUTATED        6      4      3
  HIP1 WILD-TYPE    176    129     69
D2173V6, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            6            176
  CLUS_2            4            129
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIP1 MUTATED        4      4      1      5
  HIP1 WILD-TYPE    108     92     91    181
D2173V7, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            4            108
  CLUS_2            4             92
  CLUS_3            1             91
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HIP1 MUTATED        3      2      2      0      3      1      3
  HIP1 WILD-TYPE     57     48     47     40     60    124     96
D2173V8, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            2             48
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIP1 MUTATED        5      3      1      4
  HIP1 WILD-TYPE    125     75     67    192
D2173V9, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            3             75
  CLUS_3            1             67
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HIP1 MUTATED        3      3      3      1      3      0      0      0      0
  HIP1 WILD-TYPE     37     59     25     79     66     48     43     28     74
D2173V10, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            3             37
  CLUS_2            3             59
  CLUS_3            3             25
  CLUS_4            1             79
  CLUS_5            3             66
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIP1 MUTATED        1      2      0      1
  HIP1 WILD-TYPE     32     29     27     18
D2173V11, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             29
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIP1 MUTATED        2      1      1      0
  HIP1 WILD-TYPE     52      9     23     22
D2173V12, multiclass
        clus
vv       HIP1 MUTATED HIP1 WILD-TYPE
  CLUS_1            2             52
  CLUS_2            1              9
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2174) Variable = AP3B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        3      1      0      3
  AP3B1 WILD-TYPE     43     57     64     40
D2174V1, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        3      1      3
  AP3B1 WILD-TYPE     48     82     74
D2174V2, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             3              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        9      2      1      0
  AP3B1 WILD-TYPE    169    181    100     20
D2174V3, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        3      0      2
  AP3B1 WILD-TYPE     84     80     98
D2174V4, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             2              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        1      3      3
  AP3B1 WILD-TYPE     88    157    135
D2174V5, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             157
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        3      3      1
  AP3B1 WILD-TYPE    179    130     71
D2174V6, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             3             130
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        1      2      2      7
  AP3B1 WILD-TYPE    111     94     90    179
D2174V7, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AP3B1 MUTATED        2      0      2      1      1      1      5
  AP3B1 WILD-TYPE     58     50     47     39     62    124     94
D2174V8, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        2      3      0      7
  AP3B1 WILD-TYPE    128     75     68    189
D2174V9, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             2             128
  CLUS_2             3              75
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  AP3B1 MUTATED        0      3      2      1      5      1      0      0
  AP3B1 WILD-TYPE     40     59     26     79     64     47     43     28
                 vv
clus              CLUS_9
  AP3B1 MUTATED        0
  AP3B1 WILD-TYPE     74
D2174V10, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        0      0      1      1
  AP3B1 WILD-TYPE     33     31     26     18
D2174V11, multiclass
[1] "Remove cluster labels:" "AP3B1 MUTATED"         
clus
  AP3B1 MUTATED AP3B1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        1      1      0      0
  AP3B1 WILD-TYPE     53      9     24     22
D2174V12, multiclass
[1] "Remove cluster labels:" "AP3B1 MUTATED"         
clus
  AP3B1 MUTATED AP3B1 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" "AP3B1 WILD-TYPE" 

Clustering(2175) Variable = C10ORF81 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF81 MUTATED        0      2      0      0
  C10ORF81 WILD-TYPE     46     56     64     43
D2175V1, multiclass
[1] "Remove cluster labels:" "C10ORF81 MUTATED"      
clus
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3561 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3664         TCGA-AA-3666 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3667         TCGA-AA-3672         TCGA-AA-3673 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3678         TCGA-AA-3679         TCGA-AA-3680 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3684         TCGA-AA-3685 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3692         TCGA-AA-3693 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3710         TCGA-AA-3715 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3812         TCGA-AA-3814 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3815         TCGA-AA-3818         TCGA-AA-3819 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3821         TCGA-AA-3831         TCGA-AA-3833 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3846         TCGA-AA-3848 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3851         TCGA-AA-3852 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3854         TCGA-AA-3855         TCGA-AA-3856 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3858         TCGA-AA-3860         TCGA-AA-3861 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3867 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3870         TCGA-AA-3872 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3875         TCGA-AA-3877         TCGA-AA-3930 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3950         TCGA-AA-3952 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3956         TCGA-AA-3966 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3976 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3977         TCGA-AA-3979         TCGA-AA-3980 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF81 MUTATED        0      2      0
  C10ORF81 WILD-TYPE     51     81     77
D2175V2, multiclass
[1] "Remove cluster labels:" "C10ORF81 MUTATED"      
clus
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3561 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3664         TCGA-AA-3666 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3667         TCGA-AA-3672         TCGA-AA-3673 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3678         TCGA-AA-3679         TCGA-AA-3680 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3681         TCGA-AA-3684         TCGA-AA-3685 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3688         TCGA-AA-3692         TCGA-AA-3693 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3696         TCGA-AA-3710         TCGA-AA-3715 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3812         TCGA-AA-3814 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3815         TCGA-AA-3818         TCGA-AA-3819 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3821         TCGA-AA-3831         TCGA-AA-3833 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3845         TCGA-AA-3846         TCGA-AA-3848 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3850         TCGA-AA-3851         TCGA-AA-3852 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3854         TCGA-AA-3855         TCGA-AA-3856 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3858         TCGA-AA-3860         TCGA-AA-3861 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3867 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3870         TCGA-AA-3872 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3875         TCGA-AA-3877         TCGA-AA-3930 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3950         TCGA-AA-3952 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3955         TCGA-AA-3956         TCGA-AA-3966 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3968         TCGA-AA-3971         TCGA-AA-3972 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3973         TCGA-AA-3975         TCGA-AA-3976 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3977         TCGA-AA-3979         TCGA-AA-3980 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3982         TCGA-AA-3984         TCGA-AA-3986 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF81 MUTATED        1      3      0      0
  C10ORF81 WILD-TYPE    177    180    101     20
D2175V3, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                1                177
  CLUS_2                3                180
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF81 MUTATED        0      1      1
  C10ORF81 WILD-TYPE     87     79     99
D2175V4, multiclass
[1] "Remove cluster labels:" "C10ORF81 MUTATED"      
clus
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 2                265 
        TCGA-A6-2671         TCGA-A6-2677         TCGA-A6-3809 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-3810         TCGA-A6-4105         TCGA-A6-5656 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-5657         TCGA-A6-5659         TCGA-A6-5660 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-5661         TCGA-A6-5662         TCGA-A6-5664 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-5665         TCGA-A6-5666         TCGA-A6-6137 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6138         TCGA-A6-6141         TCGA-A6-6142 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6648         TCGA-A6-6649         TCGA-A6-6651 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6652         TCGA-A6-6653         TCGA-A6-6654 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6780         TCGA-A6-6781         TCGA-A6-6782 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3489         TCGA-AA-3492         TCGA-AA-3496 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3502         TCGA-AA-3510         TCGA-AA-3511 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3655         TCGA-AA-3660         TCGA-AA-3662 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3663         TCGA-AA-3697         TCGA-AA-3712 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3713         TCGA-AD-5900         TCGA-AD-6548 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6888         TCGA-AD-6889         TCGA-AD-6890 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6895         TCGA-AD-6899         TCGA-AD-6901 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6963         TCGA-AD-6964         TCGA-AD-6965 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AF-2687         TCGA-AF-2693         TCGA-AF-4110 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02N         TCGA-AG-A036 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6549 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-AU-3779 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AU-6004         TCGA-AY-5543         TCGA-AY-6196 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AY-6197         TCGA-AY-6386         TCGA-AZ-4315 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-4323         TCGA-AZ-4616         TCGA-AZ-4681 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-4682         TCGA-AZ-5403         TCGA-AZ-5407 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6598         TCGA-AZ-6599         TCGA-AZ-6600 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6606         TCGA-AZ-6607         TCGA-AZ-6608 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CA-5254         TCGA-CA-5255         TCGA-CA-5796 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CA-5797         TCGA-CA-6715         TCGA-CA-6716 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CA-6717         TCGA-CA-6718         TCGA-CA-6719 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6624         TCGA-CK-4947 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CK-4948         TCGA-CK-4950         TCGA-CK-4952 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CK-5912         TCGA-CK-5913         TCGA-CK-5914 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CK-5915         TCGA-CK-5916         TCGA-CK-6746 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CK-6747         TCGA-CK-6748         TCGA-CK-6751 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CL-5917         TCGA-CL-5918         TCGA-CM-4743 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-4744         TCGA-CM-4746         TCGA-CM-4747 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-4752         TCGA-CM-5341         TCGA-CM-5344 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-5348         TCGA-CM-5349         TCGA-CM-5860 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-5861         TCGA-CM-5862         TCGA-CM-5863 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-5864         TCGA-CM-5868         TCGA-CM-6161 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6162         TCGA-CM-6163         TCGA-CM-6164 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6165         TCGA-CM-6166         TCGA-CM-6167 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6168         TCGA-CM-6169         TCGA-CM-6170 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6171         TCGA-CM-6172         TCGA-CM-6674 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6675         TCGA-CM-6676         TCGA-CM-6677 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-5538         TCGA-D5-5540 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-5541         TCGA-D5-6529         TCGA-D5-6532 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6533         TCGA-D5-6534         TCGA-D5-6535 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6537         TCGA-D5-6538 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6539         TCGA-D5-6540         TCGA-D5-6541 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6898         TCGA-D5-6920         TCGA-D5-6922 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6923         TCGA-D5-6924         TCGA-D5-6926 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6927         TCGA-D5-6928         TCGA-D5-6929 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6930         TCGA-D5-6931         TCGA-D5-6932 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-7000         TCGA-DC-5337         TCGA-DC-5869 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6157         TCGA-DC-6158 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0X9         TCGA-DM-A0XD 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A0XF         TCGA-DM-A1D0         TCGA-DM-A1D4 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1D6         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1DB 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1HA         TCGA-DM-A1HB         TCGA-DM-A282 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28C         TCGA-DM-A28E 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A28F         TCGA-DM-A28G         TCGA-DM-A28H 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A28K         TCGA-DT-5265         TCGA-DY-A0XA 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DF 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EF-5830 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-EI-6508 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-EI-6510         TCGA-F4-6459         TCGA-F4-6460 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6569         TCGA-F4-6570         TCGA-F4-6703 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6806 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6809         TCGA-F4-6854 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6855         TCGA-F4-6856         TCGA-F5-6464 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6293         TCGA-G4-6299         TCGA-G4-6303 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6304         TCGA-G4-6306         TCGA-G4-6307 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6309         TCGA-G4-6310         TCGA-G4-6315 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6317         TCGA-G4-6321         TCGA-G4-6323 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6586         TCGA-G4-6588         TCGA-G4-6625 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6626         TCGA-G4-6628         TCGA-G5-6235 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G5-6641 
"C10ORF81 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF81 MUTATED        1      0      2
  C10ORF81 WILD-TYPE     88    160    136
D2175V5, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                1                 88
  CLUS_2                0                160
  CLUS_3                2                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF81 MUTATED        2      0      1
  C10ORF81 WILD-TYPE    180    133     71
D2175V6, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                2                180
  CLUS_2                0                133
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF81 MUTATED        1      1      0      2
  C10ORF81 WILD-TYPE    111     95     92    184
D2175V7, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                1                 95
  CLUS_3                0                 92
  CLUS_4                2                184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C10ORF81 MUTATED        1      1      0      0      0      1      1
  C10ORF81 WILD-TYPE     59     49     49     40     63    124     98
D2175V8, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                1                 49
  CLUS_3                0                 49
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                1                124
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF81 MUTATED        1      1      0      2
  C10ORF81 WILD-TYPE    129     77     68    194
D2175V9, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                0                 68
  CLUS_4                2                194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  C10ORF81 MUTATED        0      1      1      0      1      0      0      1
  C10ORF81 WILD-TYPE     40     61     27     80     68     48     43     27
                    vv
clus                 CLUS_9
  C10ORF81 MUTATED        0
  C10ORF81 WILD-TYPE     74
D2175V10, multiclass
        clus
vv       C10ORF81 MUTATED C10ORF81 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 61
  CLUS_3                1                 27
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                1                 27
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF81 MUTATED        1      0      0      0
  C10ORF81 WILD-TYPE     32     31     27     19
D2175V11, multiclass
[1] "Remove cluster labels:" "C10ORF81 MUTATED"      
clus
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6704         TCGA-F4-6805 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6809         TCGA-F5-6464 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G5-6641 
"C10ORF81 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF81 MUTATED        0      0      1      0
  C10ORF81 WILD-TYPE     54     10     23     22
D2175V12, multiclass
[1] "Remove cluster labels:" "C10ORF81 MUTATED"      
clus
  C10ORF81 MUTATED C10ORF81 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-D5-6536         TCGA-D5-6922         TCGA-D5-6924 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6157 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6681         TCGA-DC-6682 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DC-6683         TCGA-DM-A0XD         TCGA-DM-A0XF 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1D0         TCGA-DM-A1D7         TCGA-DM-A1D8 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A1D9         TCGA-DM-A1DA         TCGA-DM-A1HA 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DM-A282         TCGA-DM-A285         TCGA-DM-A28F 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DG 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EI-6506         TCGA-EI-6507 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6459         TCGA-F4-6460         TCGA-F4-6569 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6570         TCGA-F4-6704         TCGA-F4-6805 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F4-6807         TCGA-F4-6809         TCGA-F5-6464 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" "C10ORF81 WILD-TYPE" 
        TCGA-G5-6641 
"C10ORF81 WILD-TYPE" 

Clustering(2176) Variable = LY75 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LY75 MUTATED        2      0      0      1
  LY75 WILD-TYPE     44     58     64     42
D2176V1, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            1             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LY75 MUTATED        2      0      1
  LY75 WILD-TYPE     49     83     76
D2176V2, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            0             83
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LY75 MUTATED        9      1      1      0
  LY75 WILD-TYPE    169    182    100     20
D2176V3, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            9            169
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LY75 MUTATED        4      1      2
  LY75 WILD-TYPE     83     79     98
D2176V4, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            4             83
  CLUS_2            1             79
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LY75 MUTATED        0      3      6
  LY75 WILD-TYPE     89    157    132
D2176V5, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LY75 MUTATED        5      3      1
  LY75 WILD-TYPE    177    130     71
D2176V6, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            5            177
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LY75 MUTATED        1      3      3      4
  LY75 WILD-TYPE    111     93     89    182
D2176V7, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            3             93
  CLUS_3            3             89
  CLUS_4            4            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LY75 MUTATED        1      1      4      0      2      0      3
  LY75 WILD-TYPE     59     49     45     40     61    125     96
D2176V8, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            2             61
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LY75 MUTATED        2      2      0      7
  LY75 WILD-TYPE    128     76     68    189
D2176V9, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            2            128
  CLUS_2            2             76
  CLUS_3            0             68
  CLUS_4            7            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  LY75 MUTATED        0      3      0      0      6      0      1      0      1
  LY75 WILD-TYPE     40     59     28     80     63     48     42     28     73
D2176V10, multiclass
        clus
vv       LY75 MUTATED LY75 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LY75 MUTATED        0      0      0      2
  LY75 WILD-TYPE     33     31     27     17
D2176V11, multiclass
[1] "Remove cluster labels:" "LY75 MUTATED"          
clus
  LY75 MUTATED LY75 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LY75 MUTATED        1      0      1      0
  LY75 WILD-TYPE     53     10     23     22
D2176V12, multiclass
[1] "Remove cluster labels:" "LY75 MUTATED"          
clus
  LY75 MUTATED LY75 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6625     TCGA-G5-6235     TCGA-G5-6641 
"LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" "LY75 WILD-TYPE" 

Clustering(2177) Variable = RRP9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP9 MUTATED        2      1      1      2
  RRP9 WILD-TYPE     44     57     63     41
D2177V1, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            1             63
  CLUS_4            2             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRP9 MUTATED        3      1      2
  RRP9 WILD-TYPE     48     82     75
D2177V2, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            2             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP9 MUTATED        8      5      1      0
  RRP9 WILD-TYPE    170    178    100     20
D2177V3, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            8            170
  CLUS_2            5            178
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRP9 MUTATED        3      0      4
  RRP9 WILD-TYPE     84     80     96
D2177V4, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRP9 MUTATED        2      3      6
  RRP9 WILD-TYPE     87    157    132
D2177V5, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            3            157
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRP9 MUTATED        4      5      2
  RRP9 WILD-TYPE    178    128     70
D2177V6, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            4            178
  CLUS_2            5            128
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP9 MUTATED        3      2      2      7
  RRP9 WILD-TYPE    109     94     90    179
D2177V7, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            2             94
  CLUS_3            2             90
  CLUS_4            7            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RRP9 MUTATED        3      0      4      1      0      1      5
  RRP9 WILD-TYPE     57     50     45     39     63    124     94
D2177V8, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            3             57
  CLUS_2            0             50
  CLUS_3            4             45
  CLUS_4            1             39
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            5             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP9 MUTATED        4      1      1      8
  RRP9 WILD-TYPE    126     77     67    188
D2177V9, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            4            126
  CLUS_2            1             77
  CLUS_3            1             67
  CLUS_4            8            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  RRP9 MUTATED        1      2      0      0      5      2      0      2      2
  RRP9 WILD-TYPE     39     60     28     80     64     46     43     26     72
D2177V10, multiclass
        clus
vv       RRP9 MUTATED RRP9 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            0             80
  CLUS_5            5             64
  CLUS_6            2             46
  CLUS_7            0             43
  CLUS_8            2             26
  CLUS_9            2             72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP9 MUTATED        1      0      0      1
  RRP9 WILD-TYPE     32     31     27     18
D2177V11, multiclass
[1] "Remove cluster labels:" "RRP9 MUTATED"          
clus
  RRP9 MUTATED RRP9 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-6748     TCGA-CL-5918 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A1D0     TCGA-DM-A1D7 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRP9 MUTATED        1      0      0      1
  RRP9 WILD-TYPE     53     10     24     21
D2177V12, multiclass
[1] "Remove cluster labels:" "RRP9 MUTATED"          
clus
  RRP9 MUTATED RRP9 WILD-TYPE 
             2            108 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-6748     TCGA-CL-5918 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674     TCGA-CM-6676 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679     TCGA-CM-6680 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6536 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337     TCGA-DC-5869 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681     TCGA-DC-6682 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A1D0     TCGA-DM-A1D7 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DM-A1D8     TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1HA 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28F     TCGA-DY-A1DC 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DG     TCGA-DY-A1H8     TCGA-EI-6506 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-EI-6507     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6704     TCGA-F4-6805     TCGA-F4-6807 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464     TCGA-F5-6465 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811     TCGA-F5-6812 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306     TCGA-G4-6309 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235     TCGA-G5-6641 
"RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" "RRP9 WILD-TYPE" 

Clustering(2178) Variable = CUTC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUTC MUTATED        1      0      0      0
  CUTC WILD-TYPE     45     58     64     43
D2178V1, multiclass
[1] "Remove cluster labels:" "CUTC MUTATED"          
clus
  CUTC MUTATED CUTC WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUTC MUTATED        0      1      0
  CUTC WILD-TYPE     51     82     77
D2178V2, multiclass
[1] "Remove cluster labels:" "CUTC MUTATED"          
clus
  CUTC MUTATED CUTC WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUTC MUTATED        3      2      0      0
  CUTC WILD-TYPE    175    181    101     20
D2178V3, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            3            175
  CLUS_2            2            181
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUTC MUTATED        0      2      2
  CUTC WILD-TYPE     87     78     98
D2178V4, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            0             87
  CLUS_2            2             78
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUTC MUTATED        0      3      1
  CUTC WILD-TYPE     89    157    137
D2178V5, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            0             89
  CLUS_2            3            157
  CLUS_3            1            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUTC MUTATED        1      3      0
  CUTC WILD-TYPE    181    130     72
D2178V6, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            1            181
  CLUS_2            3            130
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUTC MUTATED        2      1      1      1
  CUTC WILD-TYPE    110     95     91    185
D2178V7, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             95
  CLUS_3            1             91
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUTC MUTATED        2      0      2      0      0      1      0
  CUTC WILD-TYPE     58     50     47     40     63    124     99
D2178V8, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            2             58
  CLUS_2            0             50
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUTC MUTATED        3      0      1      1
  CUTC WILD-TYPE    127     78     67    195
D2178V9, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            3            127
  CLUS_2            0             78
  CLUS_3            1             67
  CLUS_4            1            195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  CUTC MUTATED        1      0      0      2      0      0      2      0      0
  CUTC WILD-TYPE     39     62     28     78     69     48     41     28     74
D2178V10, multiclass
        clus
vv       CUTC MUTATED CUTC WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            0             69
  CLUS_6            0             48
  CLUS_7            2             41
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUTC MUTATED        0      0      0      1
  CUTC WILD-TYPE     33     31     27     18
D2178V11, multiclass
[1] "Remove cluster labels:" "CUTC MUTATED"          
clus
  CUTC MUTATED CUTC WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-G5-6641 
"CUTC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUTC MUTATED        1      0      0      0
  CUTC WILD-TYPE     53     10     24     22
D2178V12, multiclass
[1] "Remove cluster labels:" "CUTC MUTATED"          
clus
  CUTC MUTATED CUTC WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6570     TCGA-F4-6704 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F4-6805     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F5-6464     TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-F5-6811     TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-G4-6306     TCGA-G4-6309     TCGA-G4-6625     TCGA-G5-6235 
"CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" "CUTC WILD-TYPE" 
    TCGA-G5-6641 
"CUTC WILD-TYPE" 

Clustering(2179) Variable = CAPS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPS2 MUTATED        0      0      0      0
  CAPS2 WILD-TYPE     46     58     64     43
D2179V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAPS2 MUTATED        0      0      0
  CAPS2 WILD-TYPE     51     83     77
D2179V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPS2 MUTATED        8      4      0      0
  CAPS2 WILD-TYPE    170    179    101     20
D2179V3, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             8             170
  CLUS_2             4             179
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAPS2 MUTATED        4      3      5
  CAPS2 WILD-TYPE     83     77     95
D2179V4, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAPS2 MUTATED        2      3      7
  CAPS2 WILD-TYPE     87    157    131
D2179V5, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             3             157
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CAPS2 MUTATED        6      4      2
  CAPS2 WILD-TYPE    176    129     70
D2179V6, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             6             176
  CLUS_2             4             129
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPS2 MUTATED        2      6      3      1
  CAPS2 WILD-TYPE    110     90     89    185
D2179V7, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             6              90
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CAPS2 MUTATED        1      2      7      1      0      1      0
  CAPS2 WILD-TYPE     59     48     42     39     63    124     99
D2179V8, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             1             124
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPS2 MUTATED        7      1      1      3
  CAPS2 WILD-TYPE    123     77     67    193
D2179V9, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CAPS2 MUTATED        1      1      0      1      4      1      2      0
  CAPS2 WILD-TYPE     39     61     28     79     65     47     41     28
                 vv
clus              CLUS_9
  CAPS2 MUTATED        2
  CAPS2 WILD-TYPE     72
D2179V10, multiclass
        clus
vv       CAPS2 MUTATED CAPS2 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             1              79
  CLUS_5             4              65
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPS2 MUTATED        1      0      0      1
  CAPS2 WILD-TYPE     32     31     27     18
D2179V11, multiclass
[1] "Remove cluster labels:" "CAPS2 MUTATED"         
clus
  CAPS2 MUTATED CAPS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6672      TCGA-AG-3731 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAPS2 MUTATED        1      0      0      1
  CAPS2 WILD-TYPE     53     10     24     21
D2179V12, multiclass
[1] "Remove cluster labels:" "CAPS2 MUTATED"         
clus
  CAPS2 MUTATED CAPS2 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6672      TCGA-AG-3731 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6719 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621      TCGA-CI-6624 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918      TCGA-CM-5860 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676      TCGA-CM-6677 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680      TCGA-D5-5537 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536      TCGA-D5-6922 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" "CAPS2 WILD-TYPE" 

Clustering(2180) Variable = ESYT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESYT1 MUTATED        0      0      0      1
  ESYT1 WILD-TYPE     46     58     64     42
D2180V1, multiclass
[1] "Remove cluster labels:" "ESYT1 MUTATED"         
clus
  ESYT1 MUTATED ESYT1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESYT1 MUTATED        1      0      0
  ESYT1 WILD-TYPE     50     83     77
D2180V2, multiclass
[1] "Remove cluster labels:" "ESYT1 MUTATED"         
clus
  ESYT1 MUTATED ESYT1 WILD-TYPE 
              1             210 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3866 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"ESYT1 WILD-TYPE" "ESYT1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESYT1 MUTATED        6      3      1      0
  ESYT1 WILD-TYPE    172    180    100     20
D2180V3, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESYT1 MUTATED        2      0      7
  ESYT1 WILD-TYPE     85     80     93
D2180V4, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESYT1 MUTATED        2      4      3
  ESYT1 WILD-TYPE     87    156    135
D2180V5, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             156
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESYT1 MUTATED        3      5      1
  ESYT1 WILD-TYPE    179    128     71
D2180V6, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESYT1 MUTATED        1      5      3      1
  ESYT1 WILD-TYPE    111     91     89    185
D2180V7, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ESYT1 MUTATED        2      2      4      0      1      0      1
  ESYT1 WILD-TYPE     58     48     45     40     62    125     98
D2180V8, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             2              48
  CLUS_3             4              45
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESYT1 MUTATED        4      1      1      4
  ESYT1 WILD-TYPE    126     77     67    192
D2180V9, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ESYT1 MUTATED        0      1      0      3      5      0      1      0
  ESYT1 WILD-TYPE     40     61     28     77     64     48     42     28
                 vv
clus              CLUS_9
  ESYT1 MUTATED        0
  ESYT1 WILD-TYPE     74
D2180V10, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESYT1 MUTATED        0      1      2      2
  ESYT1 WILD-TYPE     33     30     25     17
D2180V11, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESYT1 MUTATED        1      0      4      0
  ESYT1 WILD-TYPE     53     10     20     22
D2180V12, multiclass
        clus
vv       ESYT1 MUTATED ESYT1 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             4              20
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2181) Variable = KRT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT1 MUTATED        1      0      0      3
  KRT1 WILD-TYPE     45     58     64     40
D2181V1, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT1 MUTATED        2      1      1
  KRT1 WILD-TYPE     49     82     76
D2181V2, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            2             49
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT1 MUTATED       10      2      2      0
  KRT1 WILD-TYPE    168    181     99     20
D2181V3, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1           10            168
  CLUS_2            2            181
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT1 MUTATED        3      2      6
  KRT1 WILD-TYPE     84     78     94
D2181V4, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            3             84
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT1 MUTATED        2      5      7
  KRT1 WILD-TYPE     87    155    131
D2181V5, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            155
  CLUS_3            7            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRT1 MUTATED        8      5      1
  KRT1 WILD-TYPE    174    128     71
D2181V6, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            5            128
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT1 MUTATED        2      3      7      3
  KRT1 WILD-TYPE    110     93     85    183
D2181V7, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            3             93
  CLUS_3            7             85
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRT1 MUTATED        2      3      4      0      3      0      3
  KRT1 WILD-TYPE     58     47     45     40     60    125     96
D2181V8, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            3             47
  CLUS_3            4             45
  CLUS_4            0             40
  CLUS_5            3             60
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT1 MUTATED        7      3      0      4
  KRT1 WILD-TYPE    123     75     68    192
D2181V9, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            7            123
  CLUS_2            3             75
  CLUS_3            0             68
  CLUS_4            4            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  KRT1 MUTATED        0      3      4      1      2      1      1      1      1
  KRT1 WILD-TYPE     40     59     24     79     67     47     42     27     73
D2181V10, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            0             40
  CLUS_2            3             59
  CLUS_3            4             24
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT1 MUTATED        2      0      0      4
  KRT1 WILD-TYPE     31     31     27     15
D2181V11, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            4             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT1 MUTATED        4      0      1      1
  KRT1 WILD-TYPE     50     10     23     21
D2181V12, multiclass
        clus
vv       KRT1 MUTATED KRT1 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2182) Variable = SUPT6H MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT6H MUTATED        3      3      1      4
  SUPT6H WILD-TYPE     43     55     63     39
D2182V1, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              3               43
  CLUS_2              3               55
  CLUS_3              1               63
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT6H MUTATED        6      3      2
  SUPT6H WILD-TYPE     45     80     75
D2182V2, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              6               45
  CLUS_2              3               80
  CLUS_3              2               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT6H MUTATED       17      4      1      0
  SUPT6H WILD-TYPE    161    179    100     20
D2182V3, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1             17              161
  CLUS_2              4              179
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT6H MUTATED        2      1      7
  SUPT6H WILD-TYPE     85     79     93
D2182V4, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              7               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT6H MUTATED        5      6      8
  SUPT6H WILD-TYPE     84    154    130
D2182V5, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              5               84
  CLUS_2              6              154
  CLUS_3              8              130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUPT6H MUTATED       10      7      2
  SUPT6H WILD-TYPE    172    126     70
D2182V6, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1             10              172
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT6H MUTATED        3      7      3     10
  SUPT6H WILD-TYPE    109     89     89    176
D2182V7, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              3              109
  CLUS_2              7               89
  CLUS_3              3               89
  CLUS_4             10              176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SUPT6H MUTATED        4      1      7      1      0      4      6
  SUPT6H WILD-TYPE     56     49     42     39     63    121     93
D2182V8, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              4               56
  CLUS_2              1               49
  CLUS_3              7               42
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              4              121
  CLUS_7              6               93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT6H MUTATED        6      0      1     14
  SUPT6H WILD-TYPE    124     78     67    182
D2182V9, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              6              124
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4             14              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SUPT6H MUTATED        2      0      0      3     10      2      2      2
  SUPT6H WILD-TYPE     38     62     28     77     59     46     41     26
                  vv
clus               CLUS_9
  SUPT6H MUTATED        0
  SUPT6H WILD-TYPE     74
D2182V10, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              2               38
  CLUS_2              0               62
  CLUS_3              0               28
  CLUS_4              3               77
  CLUS_5             10               59
  CLUS_6              2               46
  CLUS_7              2               41
  CLUS_8              2               26
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT6H MUTATED        2      1      1      2
  SUPT6H WILD-TYPE     31     30     26     17
D2182V11, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               30
  CLUS_3              1               26
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUPT6H MUTATED        3      0      3      0
  SUPT6H WILD-TYPE     51     10     21     22
D2182V12, multiclass
        clus
vv       SUPT6H MUTATED SUPT6H WILD-TYPE
  CLUS_1              3               51
  CLUS_2              0               10
  CLUS_3              3               21
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2183) Variable = IGJ MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGJ MUTATED        0      0      0      2
  IGJ WILD-TYPE     46     58     64     41
D2183V1, multiclass
[1] "Remove cluster labels:" "IGJ MUTATED"           
clus
  IGJ MUTATED IGJ WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IGJ MUTATED        1      0      1
  IGJ WILD-TYPE     50     83     76
D2183V2, multiclass
[1] "Remove cluster labels:" "IGJ MUTATED"           
clus
  IGJ MUTATED IGJ WILD-TYPE 
            2           209 
   TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677    TCGA-A6-2678 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3809    TCGA-A6-3810 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3514    TCGA-AA-3516    TCGA-AA-3517    TCGA-AA-3518    TCGA-AA-3519 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3520    TCGA-AA-3521    TCGA-AA-3522    TCGA-AA-3524    TCGA-AA-3525 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3526    TCGA-AA-3527    TCGA-AA-3529    TCGA-AA-3530    TCGA-AA-3531 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3532    TCGA-AA-3534    TCGA-AA-3538    TCGA-AA-3542    TCGA-AA-3543 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3544    TCGA-AA-3548    TCGA-AA-3549    TCGA-AA-3552    TCGA-AA-3553 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3554    TCGA-AA-3555    TCGA-AA-3556    TCGA-AA-3558    TCGA-AA-3560 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3561    TCGA-AA-3562    TCGA-AA-3664    TCGA-AA-3666    TCGA-AA-3667 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3672    TCGA-AA-3673    TCGA-AA-3678    TCGA-AA-3679    TCGA-AA-3680 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3681    TCGA-AA-3684    TCGA-AA-3685    TCGA-AA-3688    TCGA-AA-3692 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3693    TCGA-AA-3696    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3812    TCGA-AA-3814    TCGA-AA-3815    TCGA-AA-3818    TCGA-AA-3819 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3821    TCGA-AA-3831    TCGA-AA-3833    TCGA-AA-3837    TCGA-AA-3842 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3844    TCGA-AA-3845    TCGA-AA-3846    TCGA-AA-3848    TCGA-AA-3850 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3851    TCGA-AA-3852    TCGA-AA-3854    TCGA-AA-3855    TCGA-AA-3856 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3858    TCGA-AA-3860    TCGA-AA-3861    TCGA-AA-3864    TCGA-AA-3866 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3867    TCGA-AA-3869    TCGA-AA-3870    TCGA-AA-3872    TCGA-AA-3875 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3877    TCGA-AA-3930    TCGA-AA-3939    TCGA-AA-3941    TCGA-AA-3947 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3949    TCGA-AA-3950    TCGA-AA-3952    TCGA-AA-3955    TCGA-AA-3956 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3966    TCGA-AA-3968    TCGA-AA-3971    TCGA-AA-3972    TCGA-AA-3973 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3975    TCGA-AA-3976    TCGA-AA-3977    TCGA-AA-3979    TCGA-AA-3980 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3982    TCGA-AA-3984    TCGA-AA-3986    TCGA-AA-3989    TCGA-AA-3994 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00O    TCGA-AA-A00Q 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A00R    TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A017    TCGA-AA-A01D    TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A01K    TCGA-AA-A01Q    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02W    TCGA-AF-2689    TCGA-AF-2691 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3574    TCGA-AG-3575 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3578    TCGA-AG-3580    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3584    TCGA-AG-3586    TCGA-AG-3587    TCGA-AG-3593    TCGA-AG-3594 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3598    TCGA-AG-3599    TCGA-AG-3600    TCGA-AG-3601    TCGA-AG-3602 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3605    TCGA-AG-3608    TCGA-AG-3609    TCGA-AG-3611    TCGA-AG-3612 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3881    TCGA-AG-3882 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3883    TCGA-AG-3885    TCGA-AG-3887    TCGA-AG-3890    TCGA-AG-3892 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3896    TCGA-AG-3898    TCGA-AG-3901 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3902    TCGA-AG-3909    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4005 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-4015    TCGA-AG-A008    TCGA-AG-A00C 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A02X    TCGA-AG-A032    TCGA-AY-4070    TCGA-AY-4071 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGJ MUTATED        4      0      0      0
  IGJ WILD-TYPE    174    183    101     20
D2183V3, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           4           174
  CLUS_2           0           183
  CLUS_3           0           101
  CLUS_4           0            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IGJ MUTATED        2      0      0
  IGJ WILD-TYPE     85     80    100
D2183V4, multiclass
[1] "Remove cluster labels:" "IGJ MUTATED"           
clus
  IGJ MUTATED IGJ WILD-TYPE 
            2           265 
   TCGA-A6-2671    TCGA-A6-2677    TCGA-A6-3809    TCGA-A6-3810    TCGA-A6-4105 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-5656    TCGA-A6-5657    TCGA-A6-5659    TCGA-A6-5660    TCGA-A6-5661 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-5662    TCGA-A6-5664    TCGA-A6-5665    TCGA-A6-5666    TCGA-A6-6137 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142    TCGA-A6-6648    TCGA-A6-6649 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6651    TCGA-A6-6652    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6780 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6781    TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3492    TCGA-AA-3496 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3502    TCGA-AA-3511    TCGA-AA-3655    TCGA-AA-3660    TCGA-AA-3662 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AA-3663    TCGA-AA-3697    TCGA-AA-3712    TCGA-AA-3713    TCGA-AD-5900 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AD-6548    TCGA-AD-6888    TCGA-AD-6889    TCGA-AD-6890    TCGA-AD-6895 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AD-6899    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-2693    TCGA-AF-4110    TCGA-AF-6136    TCGA-AF-6655 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AF-6672    TCGA-AG-3731    TCGA-AG-3732    TCGA-AG-3742    TCGA-AG-A01W 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A026    TCGA-AG-A02N    TCGA-AG-A036 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643    TCGA-AH-6644 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AU-3779    TCGA-AU-6004    TCGA-AY-5543    TCGA-AY-6196    TCGA-AY-6197 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AY-6386    TCGA-AZ-4315    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-4681 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AZ-4682    TCGA-AZ-5403    TCGA-AZ-5407    TCGA-AZ-6598    TCGA-AZ-6599 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6606 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AZ-6607    TCGA-AZ-6608    TCGA-CA-5254    TCGA-CA-5255    TCGA-CA-5796 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CA-5797    TCGA-CA-6715    TCGA-CA-6716    TCGA-CA-6717    TCGA-CA-6719 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6622    TCGA-CI-6624 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CK-4947    TCGA-CK-4948    TCGA-CK-4950    TCGA-CK-4952    TCGA-CK-5912 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CK-5913    TCGA-CK-5914    TCGA-CK-5915    TCGA-CK-5916    TCGA-CK-6746 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CK-6747    TCGA-CK-6748    TCGA-CK-6751    TCGA-CL-5917    TCGA-CL-5918 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-4743    TCGA-CM-4744    TCGA-CM-4746    TCGA-CM-4747    TCGA-CM-4752 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-5341    TCGA-CM-5344    TCGA-CM-5348    TCGA-CM-5349    TCGA-CM-5860 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-5861    TCGA-CM-5862    TCGA-CM-5863    TCGA-CM-5864    TCGA-CM-5868 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6161    TCGA-CM-6162    TCGA-CM-6163    TCGA-CM-6164    TCGA-CM-6165 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6166    TCGA-CM-6167    TCGA-CM-6168    TCGA-CM-6169    TCGA-CM-6170 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6171    TCGA-CM-6172    TCGA-CM-6674    TCGA-CM-6675    TCGA-CM-6676 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679    TCGA-CM-6680    TCGA-D5-5537 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-5538    TCGA-D5-5539    TCGA-D5-5540    TCGA-D5-5541    TCGA-D5-6529 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6532    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6535    TCGA-D5-6536 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6537    TCGA-D5-6538    TCGA-D5-6539    TCGA-D5-6540    TCGA-D5-6541 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6898    TCGA-D5-6920    TCGA-D5-6922    TCGA-D5-6923    TCGA-D5-6924 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6926    TCGA-D5-6927    TCGA-D5-6928    TCGA-D5-6929    TCGA-D5-6930 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6931    TCGA-D5-6932    TCGA-D5-7000    TCGA-DC-5337    TCGA-DC-5869 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DC-6155    TCGA-DC-6157    TCGA-DC-6158    TCGA-DC-6160    TCGA-DC-6681 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0X9    TCGA-DM-A0XD    TCGA-DM-A0XF 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A1D0    TCGA-DM-A1D4    TCGA-DM-A1D6    TCGA-DM-A1D7    TCGA-DM-A1D8 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A1D9    TCGA-DM-A1DA    TCGA-DM-A1DB    TCGA-DM-A1HA    TCGA-DM-A1HB 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28C    TCGA-DM-A28E    TCGA-DM-A28F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A28G    TCGA-DM-A28H    TCGA-DM-A28K    TCGA-DT-5265    TCGA-DY-A0XA 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DF    TCGA-DY-A1DG    TCGA-DY-A1H8 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-EF-5830    TCGA-EI-6506    TCGA-EI-6507    TCGA-EI-6508    TCGA-EI-6510 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570    TCGA-F4-6703 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6806    TCGA-F4-6807    TCGA-F4-6808 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F4-6809    TCGA-F4-6854    TCGA-F4-6855    TCGA-F4-6856    TCGA-F5-6464 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811    TCGA-F5-6812 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F5-6813    TCGA-G4-6293    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6304 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-G4-6306    TCGA-G4-6307    TCGA-G4-6309    TCGA-G4-6310    TCGA-G4-6315 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-G4-6317    TCGA-G4-6321    TCGA-G4-6323    TCGA-G4-6586    TCGA-G4-6588 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6626    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IGJ MUTATED        0      2      2
  IGJ WILD-TYPE     89    158    136
D2183V5, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           0            89
  CLUS_2           2           158
  CLUS_3           2           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IGJ MUTATED        2      2      0
  IGJ WILD-TYPE    180    131     72
D2183V6, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           2           180
  CLUS_2           2           131
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGJ MUTATED        0      0      1      3
  IGJ WILD-TYPE    112     96     91    183
D2183V7, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           0           112
  CLUS_2           0            96
  CLUS_3           1            91
  CLUS_4           3           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGJ MUTATED        1      0      1      0      0      0      2
  IGJ WILD-TYPE     59     50     48     40     63    125     97
D2183V8, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           1            59
  CLUS_2           0            50
  CLUS_3           1            48
  CLUS_4           0            40
  CLUS_5           0            63
  CLUS_6           0           125
  CLUS_7           2            97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGJ MUTATED        0      1      0      2
  IGJ WILD-TYPE    130     77     68    194
D2183V9, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           0           130
  CLUS_2           1            77
  CLUS_3           0            68
  CLUS_4           2           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  IGJ MUTATED        0      1      0      0      1      0      0      0      1
  IGJ WILD-TYPE     40     61     28     80     68     48     43     28     73
D2183V10, multiclass
        clus
vv       IGJ MUTATED IGJ WILD-TYPE
  CLUS_1           0            40
  CLUS_2           1            61
  CLUS_3           0            28
  CLUS_4           0            80
  CLUS_5           1            68
  CLUS_6           0            48
  CLUS_7           0            43
  CLUS_8           0            28
  CLUS_9           1            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGJ MUTATED        0      0      0      1
  IGJ WILD-TYPE     33     31     27     18
D2183V11, multiclass
[1] "Remove cluster labels:" "IGJ MUTATED"           
clus
  IGJ MUTATED IGJ WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGJ MUTATED        1      0      0      0
  IGJ WILD-TYPE     53     10     24     22
D2183V12, multiclass
[1] "Remove cluster labels:" "IGJ MUTATED"           
clus
  IGJ MUTATED IGJ WILD-TYPE 
            1           109 
   TCGA-A6-5657    TCGA-A6-6137    TCGA-A6-6138    TCGA-A6-6141    TCGA-A6-6142 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6649    TCGA-A6-6651    TCGA-A6-6653    TCGA-A6-6654    TCGA-A6-6781 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-A6-6782    TCGA-AA-3489    TCGA-AA-3511    TCGA-AD-5900    TCGA-AD-6548 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AD-6889    TCGA-AD-6901    TCGA-AD-6963    TCGA-AD-6964    TCGA-AD-6965 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AF-2687    TCGA-AF-4110    TCGA-AF-6655    TCGA-AF-6672    TCGA-AG-3731 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AG-3732    TCGA-AH-6544    TCGA-AH-6547    TCGA-AH-6549    TCGA-AH-6643 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AY-6196    TCGA-AZ-4323    TCGA-AZ-4616    TCGA-AZ-5403    TCGA-AZ-6598 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-AZ-6600    TCGA-AZ-6601    TCGA-AZ-6603    TCGA-AZ-6605    TCGA-AZ-6607 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CA-6719    TCGA-CI-6619    TCGA-CI-6620    TCGA-CI-6621    TCGA-CI-6624 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CK-5916    TCGA-CK-6748    TCGA-CL-5918    TCGA-CM-5860    TCGA-CM-6167 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6674    TCGA-CM-6676    TCGA-CM-6677    TCGA-CM-6678    TCGA-CM-6679 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-CM-6680    TCGA-D5-5537    TCGA-D5-6533    TCGA-D5-6534    TCGA-D5-6536 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-D5-6922    TCGA-D5-6924    TCGA-DC-5337    TCGA-DC-5869    TCGA-DC-6157 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DC-6158    TCGA-DC-6681    TCGA-DC-6682    TCGA-DC-6683    TCGA-DM-A0XD 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A0XF    TCGA-DM-A1D0    TCGA-DM-A1D7    TCGA-DM-A1D8    TCGA-DM-A1D9 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DM-A1DA    TCGA-DM-A1HA    TCGA-DM-A282    TCGA-DM-A285    TCGA-DM-A28F 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-DY-A1DC    TCGA-DY-A1DD    TCGA-DY-A1DG    TCGA-DY-A1H8    TCGA-EI-6506 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-EI-6507    TCGA-F4-6459    TCGA-F4-6460    TCGA-F4-6569    TCGA-F4-6570 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F4-6704    TCGA-F4-6805    TCGA-F4-6807    TCGA-F4-6808    TCGA-F4-6809 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F5-6464    TCGA-F5-6465    TCGA-F5-6571    TCGA-F5-6702    TCGA-F5-6811 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-F5-6812    TCGA-G4-6299    TCGA-G4-6303    TCGA-G4-6306    TCGA-G4-6309 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 
   TCGA-G4-6625    TCGA-G4-6628    TCGA-G5-6235    TCGA-G5-6641 
"IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" "IGJ WILD-TYPE" 

Clustering(2184) Variable = TRAF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3 MUTATED        4      0      0      2
  TRAF3 WILD-TYPE     42     58     64     41
D2184V1, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRAF3 MUTATED        5      0      1
  TRAF3 WILD-TYPE     46     83     76
D2184V2, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3 MUTATED       10      0      2      0
  TRAF3 WILD-TYPE    168    183     99     20
D2184V3, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             0             183
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRAF3 MUTATED        1      0      4
  TRAF3 WILD-TYPE     86     80     96
D2184V4, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRAF3 MUTATED        2      2      6
  TRAF3 WILD-TYPE     87    158    132
D2184V5, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             2             158
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRAF3 MUTATED        5      2      3
  TRAF3 WILD-TYPE    177    131     69
D2184V6, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             2             131
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3 MUTATED        1      2      2      7
  TRAF3 WILD-TYPE    111     94     90    179
D2184V7, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              94
  CLUS_3             2              90
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TRAF3 MUTATED        0      0      3      1      0      0      8
  TRAF3 WILD-TYPE     60     50     46     39     63    125     91
D2184V8, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             8              91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3 MUTATED        3      1      1      7
  TRAF3 WILD-TYPE    127     77     67    189
D2184V9, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             3             127
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TRAF3 MUTATED        0      2      1      0      8      0      0      0
  TRAF3 WILD-TYPE     40     60     27     80     61     48     43     28
                 vv
clus              CLUS_9
  TRAF3 MUTATED        1
  TRAF3 WILD-TYPE     73
D2184V10, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             8              61
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3 MUTATED        0      1      0      2
  TRAF3 WILD-TYPE     33     30     27     17
D2184V11, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAF3 MUTATED        3      0      0      0
  TRAF3 WILD-TYPE     51     10     24     22
D2184V12, multiclass
        clus
vv       TRAF3 MUTATED TRAF3 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2185) Variable = IPO11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        3      0      0      2
  IPO11 WILD-TYPE     43     58     64     41
D2185V1, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        4      0      1
  IPO11 WILD-TYPE     47     83     76
D2185V2, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             0              83
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED       10      2      3      0
  IPO11 WILD-TYPE    168    181     98     20
D2185V3, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        3      3      5
  IPO11 WILD-TYPE     84     77     95
D2185V4, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             3              77
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        1      4      6
  IPO11 WILD-TYPE     88    156    132
D2185V5, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        7      2      2
  IPO11 WILD-TYPE    175    131     70
D2185V6, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        4      3      3      5
  IPO11 WILD-TYPE    108     93     89    181
D2185V7, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             3              93
  CLUS_3             3              89
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IPO11 MUTATED        2      3      2      1      3      0      4
  IPO11 WILD-TYPE     58     47     47     39     60    125     95
D2185V8, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             3              47
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             3              60
  CLUS_6             0             125
  CLUS_7             4              95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        7      2      1      4
  IPO11 WILD-TYPE    123     76     67    192
D2185V9, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  IPO11 MUTATED        1      3      1      4      3      1      1      0
  IPO11 WILD-TYPE     39     59     27     76     66     47     42     28
                 vv
clus              CLUS_9
  IPO11 MUTATED        0
  IPO11 WILD-TYPE     74
D2185V10, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             4              76
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        1      1      1      1
  IPO11 WILD-TYPE     32     30     26     18
D2185V11, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             1              26
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        0      1      2      1
  IPO11 WILD-TYPE     54      9     22     21
D2185V12, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             0              54
  CLUS_2             1               9
  CLUS_3             2              22
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2186) Variable = AFF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF3 MUTATED        2      1      0      5
  AFF3 WILD-TYPE     44     57     64     38
D2186V1, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             57
  CLUS_3            0             64
  CLUS_4            5             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF3 MUTATED        6      2      0
  AFF3 WILD-TYPE     45     81     77
D2186V2, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            6             45
  CLUS_2            2             81
  CLUS_3            0             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF3 MUTATED       17      3      4      0
  AFF3 WILD-TYPE    161    180     97     20
D2186V3, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1           17            161
  CLUS_2            3            180
  CLUS_3            4             97
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF3 MUTATED        8      4      2
  AFF3 WILD-TYPE     79     76     98
D2186V4, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            8             79
  CLUS_2            4             76
  CLUS_3            2             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF3 MUTATED        6      6     10
  AFF3 WILD-TYPE     83    154    128
D2186V5, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            6             83
  CLUS_2            6            154
  CLUS_3           10            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AFF3 MUTATED       11      7      4
  AFF3 WILD-TYPE    171    126     68
D2186V6, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1           11            171
  CLUS_2            7            126
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF3 MUTATED        3      3      8     11
  AFF3 WILD-TYPE    109     93     84    175
D2186V7, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            3            109
  CLUS_2            3             93
  CLUS_3            8             84
  CLUS_4           11            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AFF3 MUTATED        2      2      5      0      5      2      9
  AFF3 WILD-TYPE     58     48     44     40     58    123     90
D2186V8, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            2             48
  CLUS_3            5             44
  CLUS_4            0             40
  CLUS_5            5             58
  CLUS_6            2            123
  CLUS_7            9             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF3 MUTATED        5      5      2     12
  AFF3 WILD-TYPE    125     73     66    184
D2186V9, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            5            125
  CLUS_2            5             73
  CLUS_3            2             66
  CLUS_4           12            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AFF3 MUTATED        1      7      2      3      6      0      0      1      4
  AFF3 WILD-TYPE     39     55     26     77     63     48     43     27     70
D2186V10, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            7             55
  CLUS_3            2             26
  CLUS_4            3             77
  CLUS_5            6             63
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            1             27
  CLUS_9            4             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF3 MUTATED        0      1      0      3
  AFF3 WILD-TYPE     33     30     27     16
D2186V11, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             30
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFF3 MUTATED        3      0      1      0
  AFF3 WILD-TYPE     51     10     23     22
D2186V12, multiclass
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2187) Variable = BTBD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        3      0      0      2
  BTBD7 WILD-TYPE     43     58     64     41
D2187V1, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED        2      3      0
  BTBD7 WILD-TYPE     49     80     77
D2187V2, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             2              49
  CLUS_2             3              80
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED       10      2      0      0
  BTBD7 WILD-TYPE    168    181    101     20
D2187V3, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1            10             168
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED        2      2      4
  BTBD7 WILD-TYPE     85     78     96
D2187V4, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             2              78
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED        1      4      6
  BTBD7 WILD-TYPE     88    156    132
D2187V5, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             4             156
  CLUS_3             6             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED        3      7      1
  BTBD7 WILD-TYPE    179    126     71
D2187V6, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        1      5      2      4
  BTBD7 WILD-TYPE    111     91     90    182
D2187V7, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTBD7 MUTATED        0      2      5      0      0      2      3
  BTBD7 WILD-TYPE     60     48     44     40     63    123     96
D2187V8, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        4      1      1      4
  BTBD7 WILD-TYPE    126     77     67    192
D2187V9, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  BTBD7 MUTATED        1      2      1      2      1      0      2      1
  BTBD7 WILD-TYPE     39     60     27     78     68     48     41     27
                 vv
clus              CLUS_9
  BTBD7 MUTATED        0
  BTBD7 WILD-TYPE     74
D2187V10, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             2              78
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             2              41
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        1      0      0      0
  BTBD7 WILD-TYPE     32     31     27     19
D2187V11, multiclass
[1] "Remove cluster labels:" "BTBD7 MUTATED"         
clus
  BTBD7 MUTATED BTBD7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-G5-6641 
"BTBD7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        1      0      0      0
  BTBD7 WILD-TYPE     53     10     24     22
D2187V12, multiclass
[1] "Remove cluster labels:" "BTBD7 MUTATED"         
clus
  BTBD7 MUTATED BTBD7 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6782      TCGA-AA-3489      TCGA-AA-3511 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889      TCGA-AD-6901 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965      TCGA-AF-2687 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672      TCGA-AG-3731 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547      TCGA-AH-6549 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323      TCGA-AZ-4616 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600      TCGA-AZ-6601 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" "BTBD7 WILD-TYPE" 
     TCGA-G5-6641 
"BTBD7 WILD-TYPE" 

Clustering(2188) Variable = SUSD5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUSD5 MUTATED        1      0      0      1
  SUSD5 WILD-TYPE     45     58     64     42
D2188V1, multiclass
[1] "Remove cluster labels:" "SUSD5 MUTATED"         
clus
  SUSD5 MUTATED SUSD5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3667 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AY-4071 
"SUSD5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUSD5 MUTATED        0      1      1
  SUSD5 WILD-TYPE     51     82     76
D2188V2, multiclass
[1] "Remove cluster labels:" "SUSD5 MUTATED"         
clus
  SUSD5 MUTATED SUSD5 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3667 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3696 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986      TCGA-AA-3989 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" "SUSD5 WILD-TYPE" 
     TCGA-AY-4071 
"SUSD5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUSD5 MUTATED        6      3      0      0
  SUSD5 WILD-TYPE    172    180    101     20
D2188V3, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             6             172
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUSD5 MUTATED        4      1      1
  SUSD5 WILD-TYPE     83     79     99
D2188V4, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUSD5 MUTATED        0      4      4
  SUSD5 WILD-TYPE     89    156    134
D2188V5, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3             4             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SUSD5 MUTATED        4      2      2
  SUSD5 WILD-TYPE    178    131     70
D2188V6, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUSD5 MUTATED        1      1      3      4
  SUSD5 WILD-TYPE    111     95     89    182
D2188V7, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             3              89
  CLUS_4             4             182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SUSD5 MUTATED        0      0      3      1      1      3      1
  SUSD5 WILD-TYPE     60     50     46     39     62    122     98
D2188V8, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             3              46
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             3             122
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUSD5 MUTATED        1      3      1      4
  SUSD5 WILD-TYPE    129     75     67    192
D2188V9, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SUSD5 MUTATED        0      3      0      2      2      0      1      0
  SUSD5 WILD-TYPE     40     59     28     78     67     48     42     28
                 vv
clus              CLUS_9
  SUSD5 MUTATED        1
  SUSD5 WILD-TYPE     73
D2188V10, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUSD5 MUTATED        1      0      0      2
  SUSD5 WILD-TYPE     32     31     27     17
D2188V11, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUSD5 MUTATED        1      0      1      1
  SUSD5 WILD-TYPE     53     10     23     21
D2188V12, multiclass
        clus
vv       SUSD5 MUTATED SUSD5 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2189) Variable = CDKL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL4 MUTATED        1      0      0      1
  CDKL4 WILD-TYPE     45     58     64     42
D2189V1, multiclass
[1] "Remove cluster labels:" "CDKL4 MUTATED"         
clus
  CDKL4 MUTATED CDKL4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AY-4071 
"CDKL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL4 MUTATED        0      2      0
  CDKL4 WILD-TYPE     51     81     77
D2189V2, multiclass
[1] "Remove cluster labels:" "CDKL4 MUTATED"         
clus
  CDKL4 MUTATED CDKL4 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3986 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AY-4071 
"CDKL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL4 MUTATED        4      0      1      0
  CDKL4 WILD-TYPE    174    183    100     20
D2189V3, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL4 MUTATED        1      2      0
  CDKL4 WILD-TYPE     86     78    100
D2189V4, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             1              86
  CLUS_2             2              78
  CLUS_3             0             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL4 MUTATED        0      2      2
  CDKL4 WILD-TYPE     89    158    136
D2189V5, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             2             158
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL4 MUTATED        2      2      0
  CDKL4 WILD-TYPE    180    131     72
D2189V6, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             2             180
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL4 MUTATED        1      0      2      2
  CDKL4 WILD-TYPE    111     96     90    184
D2189V7, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             0              96
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDKL4 MUTATED        1      0      1      0      1      1      1
  CDKL4 WILD-TYPE     59     50     48     40     62    124     98
D2189V8, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL4 MUTATED        1      2      0      2
  CDKL4 WILD-TYPE    129     76     68    194
D2189V9, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             2             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CDKL4 MUTATED        1      2      1      1      0      0      0      0
  CDKL4 WILD-TYPE     39     60     27     79     69     48     43     28
                 vv
clus              CLUS_9
  CDKL4 MUTATED        0
  CDKL4 WILD-TYPE     74
D2189V10, multiclass
        clus
vv       CDKL4 MUTATED CDKL4 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             1              79
  CLUS_5             0              69
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL4 MUTATED        0      1      0      1
  CDKL4 WILD-TYPE     33     30     27     18
D2189V11, multiclass
[1] "Remove cluster labels:" "CDKL4 MUTATED"         
clus
  CDKL4 MUTATED CDKL4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL4 MUTATED        1      1      0      0
  CDKL4 WILD-TYPE     53      9     24     22
D2189V12, multiclass
[1] "Remove cluster labels:" "CDKL4 MUTATED"         
clus
  CDKL4 MUTATED CDKL4 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869      TCGA-DC-6157 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682      TCGA-DC-6683 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0      TCGA-DM-A1D7 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA      TCGA-DM-A1HA 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F      TCGA-DY-A1DC 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8      TCGA-EI-6506 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460      TCGA-F4-6569 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805      TCGA-F4-6807 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464      TCGA-F5-6465 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811      TCGA-F5-6812 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306      TCGA-G4-6309 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 
     TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235      TCGA-G5-6641 
"CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" "CDKL4 WILD-TYPE" 

Clustering(2190) Variable = B3GALNT2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GALNT2 MUTATED        0      0      0      0
  B3GALNT2 WILD-TYPE     46     58     64     43
D2190V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B3GALNT2 MUTATED        0      0      0
  B3GALNT2 WILD-TYPE     51     83     77
D2190V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GALNT2 MUTATED        3      0      0      0
  B3GALNT2 WILD-TYPE    175    183    101     20
D2190V3, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                3                175
  CLUS_2                0                183
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B3GALNT2 MUTATED        2      0      1
  B3GALNT2 WILD-TYPE     85     80     99
D2190V4, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                2                 85
  CLUS_2                0                 80
  CLUS_3                1                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B3GALNT2 MUTATED        0      0      3
  B3GALNT2 WILD-TYPE     89    160    135
D2190V5, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                0                160
  CLUS_3                3                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B3GALNT2 MUTATED        3      0      0
  B3GALNT2 WILD-TYPE    179    133     72
D2190V6, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                3                179
  CLUS_2                0                133
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GALNT2 MUTATED        0      1      2      0
  B3GALNT2 WILD-TYPE    112     95     90    186
D2190V7, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                0                112
  CLUS_2                1                 95
  CLUS_3                2                 90
  CLUS_4                0                186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  B3GALNT2 MUTATED        1      0      2      0      0      0      0
  B3GALNT2 WILD-TYPE     59     50     47     40     63    125     99
D2190V8, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                2                 47
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                0                125
  CLUS_7                0                 99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GALNT2 MUTATED        3      0      0      0
  B3GALNT2 WILD-TYPE    127     78     68    196
D2190V9, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                3                127
  CLUS_2                0                 78
  CLUS_3                0                 68
  CLUS_4                0                196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  B3GALNT2 MUTATED        0      2      0      0      1      0      0      0
  B3GALNT2 WILD-TYPE     40     60     28     80     68     48     43     28
                    vv
clus                 CLUS_9
  B3GALNT2 MUTATED        0
  B3GALNT2 WILD-TYPE     74
D2190V10, multiclass
        clus
vv       B3GALNT2 MUTATED B3GALNT2 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                0                 80
  CLUS_5                1                 68
  CLUS_6                0                 48
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GALNT2 MUTATED        0      0      0      1
  B3GALNT2 WILD-TYPE     33     31     27     18
D2190V11, multiclass
[1] "Remove cluster labels:" "B3GALNT2 MUTATED"      
clus
  B3GALNT2 MUTATED B3GALNT2 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-G5-6641 
"B3GALNT2 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GALNT2 MUTATED        1      0      0      0
  B3GALNT2 WILD-TYPE     53     10     24     22
D2190V12, multiclass
[1] "Remove cluster labels:" "B3GALNT2 MUTATED"      
clus
  B3GALNT2 MUTATED B3GALNT2 WILD-TYPE 
                 1                109 
        TCGA-A6-5657         TCGA-A6-6137         TCGA-A6-6138 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-A6-6141         TCGA-A6-6142         TCGA-A6-6649 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-A6-6651         TCGA-A6-6653         TCGA-A6-6654 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-A6-6781         TCGA-A6-6782         TCGA-AA-3489 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AA-3511         TCGA-AD-5900         TCGA-AD-6548 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AD-6889         TCGA-AD-6901         TCGA-AD-6963 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AD-6964         TCGA-AD-6965         TCGA-AF-2687 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-6655         TCGA-AF-6672 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AH-6544 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6549         TCGA-AH-6643 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AY-6196         TCGA-AZ-4323         TCGA-AZ-4616 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AZ-5403         TCGA-AZ-6598         TCGA-AZ-6600 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AZ-6601         TCGA-AZ-6603         TCGA-AZ-6605 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-AZ-6607         TCGA-CA-6718         TCGA-CA-6719 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CI-6624         TCGA-CK-5916         TCGA-CK-6748 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CL-5918         TCGA-CM-5860         TCGA-CM-6167 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CM-6674         TCGA-CM-6676         TCGA-CM-6677 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-CM-6678         TCGA-CM-6679         TCGA-CM-6680 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-D5-5537         TCGA-D5-6533         TCGA-D5-6534 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-D5-6922         TCGA-D5-6924         TCGA-DC-5337 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6157         TCGA-DC-6158 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A0XD         TCGA-DM-A0XF         TCGA-DM-A1D0 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A1D7         TCGA-DM-A1D8         TCGA-DM-A1D9 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A1DA         TCGA-DM-A1HA         TCGA-DM-A282 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DM-A285         TCGA-DM-A28F         TCGA-DY-A1DC 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DG         TCGA-DY-A1H8 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-F4-6459 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F4-6460         TCGA-F4-6569         TCGA-F4-6570 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F4-6704         TCGA-F4-6805         TCGA-F4-6807 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F4-6808         TCGA-F4-6809         TCGA-F5-6464 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F5-6465         TCGA-F5-6571         TCGA-F5-6702 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-G4-6299 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-G4-6303         TCGA-G4-6306         TCGA-G4-6309 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-G4-6625         TCGA-G4-6628         TCGA-G5-6235 
"B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" "B3GALNT2 WILD-TYPE" 
        TCGA-G5-6641 
"B3GALNT2 WILD-TYPE" 

Clustering(2191) Variable = OR4N5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N5 MUTATED        0      0      0      0
  OR4N5 WILD-TYPE     46     58     64     43
D2191V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N5 MUTATED        0      0      0
  OR4N5 WILD-TYPE     51     83     77
D2191V2, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N5 MUTATED        2      0      1      0
  OR4N5 WILD-TYPE    176    183    100     20
D2191V3, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             2             176
  CLUS_2             0             183
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N5 MUTATED        2      0      1
  OR4N5 WILD-TYPE     85     80     99
D2191V4, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N5 MUTATED        1      0      2
  OR4N5 WILD-TYPE     88    160    136
D2191V5, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             0             160
  CLUS_3             2             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4N5 MUTATED        3      0      0
  OR4N5 WILD-TYPE    179    133     72
D2191V6, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             0             133
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N5 MUTATED        0      1      2      0
  OR4N5 WILD-TYPE    112     95     90    186
D2191V7, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             0             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OR4N5 MUTATED        0      0      1      1      1      0      0
  OR4N5 WILD-TYPE     60     50     48     39     62    125     99
D2191V8, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             0              60
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             0             125
  CLUS_7             0              99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N5 MUTATED        1      1      1      0
  OR4N5 WILD-TYPE    129     77     67    196
D2191V9, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             0             196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  OR4N5 MUTATED        0      1      0      0      1      0      1      0
  OR4N5 WILD-TYPE     40     61     28     80     68     48     42     28
                 vv
clus              CLUS_9
  OR4N5 MUTATED        0
  OR4N5 WILD-TYPE     74
D2191V10, multiclass
        clus
vv       OR4N5 MUTATED OR4N5 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             1              61
  CLUS_3             0              28
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N5 MUTATED        0      0      1      1
  OR4N5 WILD-TYPE     33     31     26     18
D2191V11, multiclass
[1] "Remove cluster labels:" "OR4N5 MUTATED"         
clus
  OR4N5 MUTATED OR4N5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6641 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4N5 MUTATED        1      0      1      0
  OR4N5 WILD-TYPE     53     10     23     22
D2191V12, multiclass
[1] "Remove cluster labels:" "OR4N5 MUTATED"         
clus
  OR4N5 MUTATED OR4N5 WILD-TYPE 
              2             108 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6641 
"OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" "OR4N5 WILD-TYPE" 

Clustering(2192) Variable = GADD45GIP1 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GADD45GIP1 MUTATED        0      0      0      0
  GADD45GIP1 WILD-TYPE     46     58     64     43
D2192V1, multiclass
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  GADD45GIP1 MUTATED        0      0      0
  GADD45GIP1 WILD-TYPE     51     83     77
D2192V2, multiclass
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GADD45GIP1 MUTATED        3      1      0      0
  GADD45GIP1 WILD-TYPE    175    182    101     20
D2192V3, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  3                  175
  CLUS_2                  1                  182
  CLUS_3                  0                  101
  CLUS_4                  0                   20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  GADD45GIP1 MUTATED        2      0      2
  GADD45GIP1 WILD-TYPE     85     80     98
D2192V4, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  2                   85
  CLUS_2                  0                   80
  CLUS_3                  2                   98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  GADD45GIP1 MUTATED        0      0      2
  GADD45GIP1 WILD-TYPE     89    160    136
D2192V5, multiclass
[1] "Remove cluster labels:" "GADD45GIP1 MUTATED"    
clus
  GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE 
                   2                  385 
          TCGA-A6-2671           TCGA-A6-2672           TCGA-A6-2676 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-2677           TCGA-A6-2678           TCGA-A6-2683 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-3807           TCGA-A6-3808           TCGA-A6-3809 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-3810           TCGA-A6-5656           TCGA-A6-5657 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-5659           TCGA-A6-5660           TCGA-A6-5661 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-5662           TCGA-A6-5664           TCGA-A6-5665 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-5666           TCGA-A6-6137           TCGA-A6-6138 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-6141           TCGA-A6-6142           TCGA-A6-6648 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-6649           TCGA-A6-6651           TCGA-A6-6652 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-6654           TCGA-A6-6780           TCGA-A6-6782 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3489           TCGA-AA-3492           TCGA-AA-3496 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3502           TCGA-AA-3510           TCGA-AA-3511 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3514           TCGA-AA-3517           TCGA-AA-3519 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3520           TCGA-AA-3521           TCGA-AA-3522 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3525           TCGA-AA-3529           TCGA-AA-3530 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3531           TCGA-AA-3532           TCGA-AA-3534 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3548           TCGA-AA-3552           TCGA-AA-3553 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3554           TCGA-AA-3555           TCGA-AA-3558 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3560           TCGA-AA-3561           TCGA-AA-3562 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3655           TCGA-AA-3664           TCGA-AA-3672 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3678           TCGA-AA-3681           TCGA-AA-3688 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3695           TCGA-AA-3696           TCGA-AA-3697 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3710           TCGA-AA-3712           TCGA-AA-3713 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3715           TCGA-AA-3811           TCGA-AA-3812 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3814           TCGA-AA-3815           TCGA-AA-3818 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3819           TCGA-AA-3831           TCGA-AA-3833 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3837           TCGA-AA-3844           TCGA-AA-3845 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3848           TCGA-AA-3850           TCGA-AA-3852 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3854           TCGA-AA-3856           TCGA-AA-3861 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3864           TCGA-AA-3866           TCGA-AA-3869 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3872           TCGA-AA-3930           TCGA-AA-3947 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3950           TCGA-AA-3955           TCGA-AA-3968 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3971           TCGA-AA-3972           TCGA-AA-3973 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3975           TCGA-AA-3982           TCGA-AA-3986 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3989           TCGA-AA-A004           TCGA-AA-A00A 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00E           TCGA-AA-A00F           TCGA-AA-A00J 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00K           TCGA-AA-A00L           TCGA-AA-A00N 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00Q           TCGA-AA-A00R           TCGA-AA-A00U 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00W           TCGA-AA-A00Z           TCGA-AA-A010 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A017           TCGA-AA-A01D           TCGA-AA-A01F 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A01I           TCGA-AA-A01K           TCGA-AA-A01P 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A01Q           TCGA-AA-A01R           TCGA-AA-A01S 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A01T           TCGA-AA-A01V           TCGA-AA-A01X 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A022           TCGA-AA-A024           TCGA-AA-A029 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A02F           TCGA-AA-A02H           TCGA-AA-A02J 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A02K           TCGA-AA-A02O           TCGA-AA-A02W 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A02Y           TCGA-AA-A03F           TCGA-AA-A03J 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AD-5900           TCGA-AD-6548           TCGA-AD-6889 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AD-6899           TCGA-AD-6965           TCGA-AF-2689 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AF-3400           TCGA-AF-3913           TCGA-AF-5654 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AF-6136           TCGA-AF-6655           TCGA-AF-6672 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3574           TCGA-AG-3578           TCGA-AG-3580 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3581           TCGA-AG-3582           TCGA-AG-3583 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3584           TCGA-AG-3586           TCGA-AG-3587 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3593           TCGA-AG-3594           TCGA-AG-3598 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3599           TCGA-AG-3600           TCGA-AG-3601 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3602           TCGA-AG-3605           TCGA-AG-3609 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3612           TCGA-AG-3727           TCGA-AG-3731 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3742           TCGA-AG-3878           TCGA-AG-3881 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3882           TCGA-AG-3885           TCGA-AG-3893 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3896           TCGA-AG-3898           TCGA-AG-3901 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3902           TCGA-AG-4001           TCGA-AG-4005 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-4007           TCGA-AG-4008           TCGA-AG-4015 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A002           TCGA-AG-A008           TCGA-AG-A00C 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A00H           TCGA-AG-A00Y           TCGA-AG-A011 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A014           TCGA-AG-A015           TCGA-AG-A016 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A01W           TCGA-AG-A01Y           TCGA-AG-A020 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02N 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A02X           TCGA-AG-A036           TCGA-AH-6544 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AH-6547           TCGA-AH-6549           TCGA-AH-6643 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AH-6644           TCGA-AU-6004           TCGA-AY-5543 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AY-6196           TCGA-AY-6197           TCGA-AY-6386 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-4315           TCGA-AZ-4323           TCGA-AZ-4616 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-4682           TCGA-AZ-5407           TCGA-AZ-6598 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-6599           TCGA-AZ-6600           TCGA-AZ-6601 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-6603           TCGA-AZ-6605           TCGA-AZ-6606 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-6607           TCGA-AZ-6608           TCGA-CA-5254 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CA-5255           TCGA-CA-5796           TCGA-CA-5797 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CA-6715           TCGA-CA-6716           TCGA-CA-6717 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CA-6718           TCGA-CA-6719           TCGA-CI-6621 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CK-5914           TCGA-CK-5916           TCGA-CK-6746 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CK-6747           TCGA-CK-6748           TCGA-CK-6751 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CL-5918           TCGA-CM-4743           TCGA-CM-4744 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-4746           TCGA-CM-4747           TCGA-CM-4752 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5341           TCGA-CM-5344           TCGA-CM-5348 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5349           TCGA-CM-5860           TCGA-CM-5861 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5862           TCGA-CM-5863           TCGA-CM-5864 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5868           TCGA-CM-6161           TCGA-CM-6162 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6163           TCGA-CM-6164           TCGA-CM-6165 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6166           TCGA-CM-6167           TCGA-CM-6168 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6169           TCGA-CM-6170           TCGA-CM-6171 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6172           TCGA-CM-6674           TCGA-CM-6675 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6676           TCGA-CM-6677           TCGA-CM-6678 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6679           TCGA-CM-6680           TCGA-D5-5538 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-5539           TCGA-D5-5540           TCGA-D5-5541 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6529           TCGA-D5-6532           TCGA-D5-6533 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6534           TCGA-D5-6535           TCGA-D5-6536 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6537           TCGA-D5-6538           TCGA-D5-6539 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6540           TCGA-D5-6541           TCGA-D5-6898 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6920           TCGA-D5-6922           TCGA-D5-6923 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6924           TCGA-D5-6926           TCGA-D5-6927 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6928           TCGA-D5-6930           TCGA-D5-6931 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6932           TCGA-DC-5337           TCGA-DC-5869 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DC-6155           TCGA-DC-6157           TCGA-DC-6158 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DC-6160           TCGA-DC-6681           TCGA-DC-6682 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DC-6683           TCGA-DM-A0X9           TCGA-DM-A0XF 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1D0           TCGA-DM-A1D4           TCGA-DM-A1D6 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1D7           TCGA-DM-A1D8           TCGA-DM-A1D9 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1DA           TCGA-DM-A1DB           TCGA-DM-A1HA 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1HB           TCGA-DM-A282           TCGA-DM-A28C 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A28E           TCGA-DM-A28F           TCGA-DM-A28G 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DT-5265           TCGA-DY-A0XA           TCGA-DY-A1DC 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DY-A1DD           TCGA-DY-A1DF           TCGA-DY-A1DG 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DY-A1H8           TCGA-EF-5830           TCGA-EI-6506 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-EI-6507           TCGA-EI-6508           TCGA-EI-6510 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6459           TCGA-F4-6460           TCGA-F4-6569 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6570           TCGA-F4-6703           TCGA-F4-6704 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6805           TCGA-F4-6806           TCGA-F4-6807 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6808           TCGA-F4-6809           TCGA-F4-6854 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6855           TCGA-F4-6856           TCGA-F5-6464 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F5-6465           TCGA-F5-6571           TCGA-F5-6702 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F5-6811           TCGA-F5-6812           TCGA-F5-6813 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6293           TCGA-G4-6299           TCGA-G4-6303 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6304           TCGA-G4-6306           TCGA-G4-6307 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6309           TCGA-G4-6310           TCGA-G4-6315 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6317           TCGA-G4-6321           TCGA-G4-6323 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6586           TCGA-G4-6588           TCGA-G4-6625 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6626           TCGA-G4-6628           TCGA-G5-6235 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G5-6641 
"GADD45GIP1 WILD-TYPE" 
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  GADD45GIP1 MUTATED        2      0      0
  GADD45GIP1 WILD-TYPE    180    133     72
D2192V6, multiclass
[1] "Remove cluster labels:" "GADD45GIP1 MUTATED"    
clus
  GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE 
                   2                  385 
          TCGA-A6-2671           TCGA-A6-2672           TCGA-A6-2676 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-2677           TCGA-A6-2678           TCGA-A6-2683 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-3807           TCGA-A6-3808           TCGA-A6-3809 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-3810           TCGA-A6-5656           TCGA-A6-5657 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-5659           TCGA-A6-5660           TCGA-A6-5661 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-5662           TCGA-A6-5664           TCGA-A6-5665 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-5666           TCGA-A6-6137           TCGA-A6-6138 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-6141           TCGA-A6-6142           TCGA-A6-6648 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-6649           TCGA-A6-6651           TCGA-A6-6652 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-A6-6654           TCGA-A6-6780           TCGA-A6-6782 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3489           TCGA-AA-3492           TCGA-AA-3496 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3502           TCGA-AA-3510           TCGA-AA-3511 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3514           TCGA-AA-3517           TCGA-AA-3519 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3520           TCGA-AA-3521           TCGA-AA-3522 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3525           TCGA-AA-3529           TCGA-AA-3530 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3531           TCGA-AA-3532           TCGA-AA-3534 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3548           TCGA-AA-3552           TCGA-AA-3553 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3554           TCGA-AA-3555           TCGA-AA-3558 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3560           TCGA-AA-3561           TCGA-AA-3562 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3655           TCGA-AA-3664           TCGA-AA-3672 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3678           TCGA-AA-3681           TCGA-AA-3688 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3695           TCGA-AA-3696           TCGA-AA-3697 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3710           TCGA-AA-3712           TCGA-AA-3713 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3715           TCGA-AA-3811           TCGA-AA-3812 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3814           TCGA-AA-3815           TCGA-AA-3818 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3819           TCGA-AA-3831           TCGA-AA-3833 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3837           TCGA-AA-3844           TCGA-AA-3845 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3848           TCGA-AA-3850           TCGA-AA-3852 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3854           TCGA-AA-3856           TCGA-AA-3861 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3864           TCGA-AA-3866           TCGA-AA-3869 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3872           TCGA-AA-3930           TCGA-AA-3947 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3950           TCGA-AA-3955           TCGA-AA-3968 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3971           TCGA-AA-3972           TCGA-AA-3973 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3975           TCGA-AA-3982           TCGA-AA-3986 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-3989           TCGA-AA-A004           TCGA-AA-A00A 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00E           TCGA-AA-A00F           TCGA-AA-A00J 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00K           TCGA-AA-A00L           TCGA-AA-A00N 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00Q           TCGA-AA-A00R           TCGA-AA-A00U 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A00W           TCGA-AA-A00Z           TCGA-AA-A010 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A017           TCGA-AA-A01D           TCGA-AA-A01F 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A01I           TCGA-AA-A01K           TCGA-AA-A01P 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A01Q           TCGA-AA-A01R           TCGA-AA-A01S 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A01T           TCGA-AA-A01V           TCGA-AA-A01X 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A022           TCGA-AA-A024           TCGA-AA-A029 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A02F           TCGA-AA-A02H           TCGA-AA-A02J 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A02K           TCGA-AA-A02O           TCGA-AA-A02W 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AA-A02Y           TCGA-AA-A03F           TCGA-AA-A03J 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AD-5900           TCGA-AD-6548           TCGA-AD-6889 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AD-6899           TCGA-AD-6965           TCGA-AF-2689 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AF-3400           TCGA-AF-3913           TCGA-AF-5654 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AF-6136           TCGA-AF-6655           TCGA-AF-6672 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3574           TCGA-AG-3578           TCGA-AG-3580 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3581           TCGA-AG-3582           TCGA-AG-3583 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3584           TCGA-AG-3586           TCGA-AG-3587 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3593           TCGA-AG-3594           TCGA-AG-3598 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3599           TCGA-AG-3600           TCGA-AG-3601 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3602           TCGA-AG-3605           TCGA-AG-3609 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3612           TCGA-AG-3727           TCGA-AG-3731 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3742           TCGA-AG-3878           TCGA-AG-3881 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3882           TCGA-AG-3885           TCGA-AG-3893 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3896           TCGA-AG-3898           TCGA-AG-3901 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-3902           TCGA-AG-4001           TCGA-AG-4005 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-4007           TCGA-AG-4008           TCGA-AG-4015 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A002           TCGA-AG-A008           TCGA-AG-A00C 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A00H           TCGA-AG-A00Y           TCGA-AG-A011 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A014           TCGA-AG-A015           TCGA-AG-A016 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A01W           TCGA-AG-A01Y           TCGA-AG-A020 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02N 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AG-A02X           TCGA-AG-A036           TCGA-AH-6544 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AH-6547           TCGA-AH-6549           TCGA-AH-6643 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AH-6644           TCGA-AU-6004           TCGA-AY-5543 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AY-6196           TCGA-AY-6197           TCGA-AY-6386 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-4315           TCGA-AZ-4323           TCGA-AZ-4616 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-4682           TCGA-AZ-5407           TCGA-AZ-6598 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-6599           TCGA-AZ-6600           TCGA-AZ-6601 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-6603           TCGA-AZ-6605           TCGA-AZ-6606 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-AZ-6607           TCGA-AZ-6608           TCGA-CA-5254 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CA-5255           TCGA-CA-5796           TCGA-CA-5797 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CA-6715           TCGA-CA-6716           TCGA-CA-6717 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CA-6718           TCGA-CA-6719           TCGA-CI-6621 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CK-5914           TCGA-CK-5916           TCGA-CK-6746 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CK-6747           TCGA-CK-6748           TCGA-CK-6751 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CL-5918           TCGA-CM-4743           TCGA-CM-4744 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-4746           TCGA-CM-4747           TCGA-CM-4752 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5341           TCGA-CM-5344           TCGA-CM-5348 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5349           TCGA-CM-5860           TCGA-CM-5861 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5862           TCGA-CM-5863           TCGA-CM-5864 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-5868           TCGA-CM-6161           TCGA-CM-6162 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6163           TCGA-CM-6164           TCGA-CM-6165 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6166           TCGA-CM-6167           TCGA-CM-6168 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6169           TCGA-CM-6170           TCGA-CM-6171 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6172           TCGA-CM-6674           TCGA-CM-6675 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6676           TCGA-CM-6677           TCGA-CM-6678 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-CM-6679           TCGA-CM-6680           TCGA-D5-5538 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-5539           TCGA-D5-5540           TCGA-D5-5541 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6529           TCGA-D5-6532           TCGA-D5-6533 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6534           TCGA-D5-6535           TCGA-D5-6536 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6537           TCGA-D5-6538           TCGA-D5-6539 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6540           TCGA-D5-6541           TCGA-D5-6898 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6920           TCGA-D5-6922           TCGA-D5-6923 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6924           TCGA-D5-6926           TCGA-D5-6927 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6928           TCGA-D5-6930           TCGA-D5-6931 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-D5-6932           TCGA-DC-5337           TCGA-DC-5869 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DC-6155           TCGA-DC-6157           TCGA-DC-6158 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DC-6160           TCGA-DC-6681           TCGA-DC-6682 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DC-6683           TCGA-DM-A0X9           TCGA-DM-A0XF 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1D0           TCGA-DM-A1D4           TCGA-DM-A1D6 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1D7           TCGA-DM-A1D8           TCGA-DM-A1D9 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1DA           TCGA-DM-A1DB           TCGA-DM-A1HA 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A1HB           TCGA-DM-A282           TCGA-DM-A28C 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DM-A28E           TCGA-DM-A28F           TCGA-DM-A28G 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DT-5265           TCGA-DY-A0XA           TCGA-DY-A1DC 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DY-A1DD           TCGA-DY-A1DF           TCGA-DY-A1DG 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-DY-A1H8           TCGA-EF-5830           TCGA-EI-6506 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-EI-6507           TCGA-EI-6508           TCGA-EI-6510 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6459           TCGA-F4-6460           TCGA-F4-6569 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6570           TCGA-F4-6703           TCGA-F4-6704 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6805           TCGA-F4-6806           TCGA-F4-6807 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6808           TCGA-F4-6809           TCGA-F4-6854 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F4-6855           TCGA-F4-6856           TCGA-F5-6464 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F5-6465           TCGA-F5-6571           TCGA-F5-6702 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-F5-6811           TCGA-F5-6812           TCGA-F5-6813 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6293           TCGA-G4-6299           TCGA-G4-6303 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6304           TCGA-G4-6306           TCGA-G4-6307 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6309           TCGA-G4-6310           TCGA-G4-6315 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6317           TCGA-G4-6321           TCGA-G4-6323 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6586           TCGA-G4-6588           TCGA-G4-6625 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G4-6626           TCGA-G4-6628           TCGA-G5-6235 
"GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" "GADD45GIP1 WILD-TYPE" 
          TCGA-G5-6641 
"GADD45GIP1 WILD-TYPE" 
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GADD45GIP1 MUTATED        0      3      1      0
  GADD45GIP1 WILD-TYPE    112     93     91    186
D2192V7, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  0                  112
  CLUS_2                  3                   93
  CLUS_3                  1                   91
  CLUS_4                  0                  186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GADD45GIP1 MUTATED        0      0      2      2      0      0      0
  GADD45GIP1 WILD-TYPE     60     50     47     38     63    125     99
D2192V8, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  0                   60
  CLUS_2                  0                   50
  CLUS_3                  2                   47
  CLUS_4                  2                   38
  CLUS_5                  0                   63
  CLUS_6                  0                  125
  CLUS_7                  0                   99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GADD45GIP1 MUTATED        1      2      0      1
  GADD45GIP1 WILD-TYPE    129     76     68    195
D2192V9, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  1                  129
  CLUS_2                  2                   76
  CLUS_3                  0                   68
  CLUS_4                  1                  195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GADD45GIP1 MUTATED        1      2      0      0      1      0      0      0
  GADD45GIP1 WILD-TYPE     39     60     28     80     68     48     43     28
                      vv
clus                   CLUS_9
  GADD45GIP1 MUTATED        0
  GADD45GIP1 WILD-TYPE     74
D2192V10, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  1                   39
  CLUS_2                  2                   60
  CLUS_3                  0                   28
  CLUS_4                  0                   80
  CLUS_5                  1                   68
  CLUS_6                  0                   48
  CLUS_7                  0                   43
  CLUS_8                  0                   28
  CLUS_9                  0                   74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GADD45GIP1 MUTATED        1      0      1      1
  GADD45GIP1 WILD-TYPE     32     31     26     18
D2192V11, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  1                   32
  CLUS_2                  0                   31
  CLUS_3                  1                   26
  CLUS_4                  1                   18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GADD45GIP1 MUTATED        1      1      1      0
  GADD45GIP1 WILD-TYPE     53      9     23     22
D2192V12, multiclass
        clus
vv       GADD45GIP1 MUTATED GADD45GIP1 WILD-TYPE
  CLUS_1                  1                   53
  CLUS_2                  1                    9
  CLUS_3                  1                   23
  CLUS_4                  0                   22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2193) Variable = RASGRP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRP3 MUTATED        1      0      1      3
  RASGRP3 WILD-TYPE     45     58     63     40
D2193V1, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               3                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RASGRP3 MUTATED        1      3      1
  RASGRP3 WILD-TYPE     50     80     76
D2193V2, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               1                50
  CLUS_2               3                80
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRP3 MUTATED        8      3      2      0
  RASGRP3 WILD-TYPE    170    180     99     20
D2193V3, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               3               180
  CLUS_3               2                99
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RASGRP3 MUTATED        2      3      2
  RASGRP3 WILD-TYPE     85     77     98
D2193V4, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               3                77
  CLUS_3               2                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RASGRP3 MUTATED        0      8      4
  RASGRP3 WILD-TYPE     89    152    134
D2193V5, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               8               152
  CLUS_3               4               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RASGRP3 MUTATED        2      7      3
  RASGRP3 WILD-TYPE    180    126     69
D2193V6, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               2               180
  CLUS_2               7               126
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRP3 MUTATED        3      4      0      6
  RASGRP3 WILD-TYPE    109     92     92    180
D2193V7, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               3               109
  CLUS_2               4                92
  CLUS_3               0                92
  CLUS_4               6               180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASGRP3 MUTATED        2      3      1      1      1      2      3
  RASGRP3 WILD-TYPE     58     47     48     39     62    123     96
D2193V8, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               1                48
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRP3 MUTATED        4      0      3      5
  RASGRP3 WILD-TYPE    126     78     65    191
D2193V9, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               0                78
  CLUS_3               3                65
  CLUS_4               5               191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RASGRP3 MUTATED        2      0      2      1      3      0      1      1
  RASGRP3 WILD-TYPE     38     62     26     79     66     48     42     27
                   vv
clus                CLUS_9
  RASGRP3 MUTATED        2
  RASGRP3 WILD-TYPE     72
D2193V10, multiclass
        clus
vv       RASGRP3 MUTATED RASGRP3 WILD-TYPE
  CLUS_1               2                38
  CLUS_2               0                62
  CLUS_3               2                26
  CLUS_4               1                79
  CLUS_5               3                66
  CLUS_6               0                48
  CLUS_7               1                42
  CLUS_8               1                27
  CLUS_9               2                72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRP3 MUTATED        0      0      0      1
  RASGRP3 WILD-TYPE     33     31     27     18
D2193V11, multiclass
[1] "Remove cluster labels:" "RASGRP3 MUTATED"       
clus
  RASGRP3 MUTATED RASGRP3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-G5-6641 
"RASGRP3 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASGRP3 MUTATED        0      0      1      0
  RASGRP3 WILD-TYPE     54     10     23     22
D2193V12, multiclass
[1] "Remove cluster labels:" "RASGRP3 MUTATED"       
clus
  RASGRP3 MUTATED RASGRP3 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CL-5918        TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CM-6676        TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-CM-6680        TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-D5-6536        TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DM-A1D0        TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DM-A1DA        TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DM-A28F        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F4-6460        TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F4-6805        TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-G4-6306        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" "RASGRP3 WILD-TYPE" 
       TCGA-G5-6641 
"RASGRP3 WILD-TYPE" 

Clustering(2194) Variable = STOX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STOX2 MUTATED        1      1      0      0
  STOX2 WILD-TYPE     45     57     64     43
D2194V1, multiclass
[1] "Remove cluster labels:" "STOX2 MUTATED"         
clus
  STOX2 MUTATED STOX2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AY-4071 
"STOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STOX2 MUTATED        1      0      1
  STOX2 WILD-TYPE     50     83     76
D2194V2, multiclass
[1] "Remove cluster labels:" "STOX2 MUTATED"         
clus
  STOX2 MUTATED STOX2 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3812 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818      TCGA-AA-3819 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833      TCGA-AA-3837 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3846 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851      TCGA-AA-3852 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856      TCGA-AA-3858 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864      TCGA-AA-3866 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939      TCGA-AA-3941 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950      TCGA-AA-3952 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3968 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AY-4071 
"STOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STOX2 MUTATED        7      2      1      0
  STOX2 WILD-TYPE    171    181    100     20
D2194V3, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             7             171
  CLUS_2             2             181
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STOX2 MUTATED        0      2      6
  STOX2 WILD-TYPE     87     78     94
D2194V4, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             0              87
  CLUS_2             2              78
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STOX2 MUTATED        4      3      1
  STOX2 WILD-TYPE     85    157    137
D2194V5, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             157
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STOX2 MUTATED        4      2      2
  STOX2 WILD-TYPE    178    131     70
D2194V6, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STOX2 MUTATED        1      5      2      2
  STOX2 WILD-TYPE    111     91     90    184
D2194V7, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             5              91
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STOX2 MUTATED        1      2      2      1      1      1      2
  STOX2 WILD-TYPE     59     48     47     39     62    124     97
D2194V8, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             2              47
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STOX2 MUTATED        5      2      0      3
  STOX2 WILD-TYPE    125     76     68    193
D2194V9, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  STOX2 MUTATED        2      3      1      0      3      1      0      0
  STOX2 WILD-TYPE     38     59     27     80     66     47     43     28
                 vv
clus              CLUS_9
  STOX2 MUTATED        0
  STOX2 WILD-TYPE     74
D2194V10, multiclass
        clus
vv       STOX2 MUTATED STOX2 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             3              59
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             3              66
  CLUS_6             1              47
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STOX2 MUTATED        0      0      0      1
  STOX2 WILD-TYPE     33     31     27     18
D2194V11, multiclass
[1] "Remove cluster labels:" "STOX2 MUTATED"         
clus
  STOX2 MUTATED STOX2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-G5-6641 
"STOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STOX2 MUTATED        1      0      0      0
  STOX2 WILD-TYPE     53     10     24     22
D2194V12, multiclass
[1] "Remove cluster labels:" "STOX2 MUTATED"         
clus
  STOX2 MUTATED STOX2 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CA-6718      TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CI-6621      TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CL-5918      TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CM-6676      TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-CM-6680      TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-D5-6536      TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DC-5869      TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DC-6682      TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DM-A1D0      TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DM-A1DA      TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DM-A28F      TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-DY-A1H8      TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F4-6460      TCGA-F4-6569      TCGA-F4-6704      TCGA-F4-6805 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" "STOX2 WILD-TYPE" 
     TCGA-G5-6641 
"STOX2 WILD-TYPE" 

Clustering(2195) Variable = SIGLEC14 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        2      0      0      0
  SIGLEC14 WILD-TYPE     44     58     64     43
D2195V1, multiclass
[1] "Remove cluster labels:" "SIGLEC14 MUTATED"      
clus
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3979 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3986 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        1      1      0
  SIGLEC14 WILD-TYPE     50     82     77
D2195V2, multiclass
[1] "Remove cluster labels:" "SIGLEC14 MUTATED"      
clus
  SIGLEC14 MUTATED SIGLEC14 WILD-TYPE 
                 2                209 
        TCGA-A6-2672         TCGA-A6-2674         TCGA-A6-2676 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3809 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3516 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3517         TCGA-AA-3518         TCGA-AA-3519 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3520         TCGA-AA-3521         TCGA-AA-3522 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3524         TCGA-AA-3525         TCGA-AA-3526 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3527         TCGA-AA-3529         TCGA-AA-3530 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3531         TCGA-AA-3532         TCGA-AA-3534 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3538         TCGA-AA-3542         TCGA-AA-3543 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3544         TCGA-AA-3548         TCGA-AA-3549 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3552         TCGA-AA-3553         TCGA-AA-3554 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3556         TCGA-AA-3558 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3560         TCGA-AA-3561         TCGA-AA-3562 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3664         TCGA-AA-3666         TCGA-AA-3667 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3672         TCGA-AA-3673         TCGA-AA-3678 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3680         TCGA-AA-3681 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3684         TCGA-AA-3685         TCGA-AA-3688 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3692         TCGA-AA-3693         TCGA-AA-3696 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3815 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3818         TCGA-AA-3819         TCGA-AA-3821 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3831         TCGA-AA-3833         TCGA-AA-3837 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3845 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3850 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3851         TCGA-AA-3852         TCGA-AA-3854 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3855         TCGA-AA-3856         TCGA-AA-3858 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3860         TCGA-AA-3861         TCGA-AA-3864 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3866         TCGA-AA-3867         TCGA-AA-3869 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3870         TCGA-AA-3872         TCGA-AA-3875 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3930         TCGA-AA-3939 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3941         TCGA-AA-3947         TCGA-AA-3949 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3950         TCGA-AA-3952         TCGA-AA-3955 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3956         TCGA-AA-3966         TCGA-AA-3968 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3979 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3980         TCGA-AA-3982         TCGA-AA-3986 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-3989         TCGA-AA-3994         TCGA-AA-A004 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00A         TCGA-AA-A00D         TCGA-AA-A00E 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00F         TCGA-AA-A00J         TCGA-AA-A00K 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00L         TCGA-AA-A00N         TCGA-AA-A00O 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A010 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A017         TCGA-AA-A01D         TCGA-AA-A01F 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01I         TCGA-AA-A01K 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A024         TCGA-AA-A029 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AF-2689         TCGA-AF-2691 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3574         TCGA-AG-3575         TCGA-AG-3578 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3580         TCGA-AG-3581         TCGA-AG-3582 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3584         TCGA-AG-3586 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3593         TCGA-AG-3594 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3598         TCGA-AG-3599         TCGA-AG-3600 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3601         TCGA-AG-3602         TCGA-AG-3605 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3608         TCGA-AG-3609         TCGA-AG-3611 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3726         TCGA-AG-3727 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A025         TCGA-AG-A026 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02X         TCGA-AG-A032 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071 
"SIGLEC14 WILD-TYPE" "SIGLEC14 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        7      1      0      0
  SIGLEC14 WILD-TYPE    171    182    101     20
D2195V3, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                7                171
  CLUS_2                1                182
  CLUS_3                0                101
  CLUS_4                0                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        3      1      2
  SIGLEC14 WILD-TYPE     84     79     98
D2195V4, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                3                 84
  CLUS_2                1                 79
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        0      2      4
  SIGLEC14 WILD-TYPE     89    158    134
D2195V5, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                0                 89
  CLUS_2                2                158
  CLUS_3                4                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC14 MUTATED        4      2      0
  SIGLEC14 WILD-TYPE    178    131     72
D2195V6, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                4                178
  CLUS_2                2                131
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        1      2      2      3
  SIGLEC14 WILD-TYPE    111     94     90    183
D2195V7, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                111
  CLUS_2                2                 94
  CLUS_3                2                 90
  CLUS_4                3                183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SIGLEC14 MUTATED        1      0      4      0      0      2      1
  SIGLEC14 WILD-TYPE     59     50     45     40     63    123     98
D2195V8, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 59
  CLUS_2                0                 50
  CLUS_3                4                 45
  CLUS_4                0                 40
  CLUS_5                0                 63
  CLUS_6                2                123
  CLUS_7                1                 98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        1      1      1      5
  SIGLEC14 WILD-TYPE    129     77     67    191
D2195V9, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                129
  CLUS_2                1                 77
  CLUS_3                1                 67
  CLUS_4                5                191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SIGLEC14 MUTATED        0      2      0      2      3      1      0      0
  SIGLEC14 WILD-TYPE     40     60     28     78     66     47     43     28
                    vv
clus                 CLUS_9
  SIGLEC14 MUTATED        0
  SIGLEC14 WILD-TYPE     74
D2195V10, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                2                 60
  CLUS_3                0                 28
  CLUS_4                2                 78
  CLUS_5                3                 66
  CLUS_6                1                 47
  CLUS_7                0                 43
  CLUS_8                0                 28
  CLUS_9                0                 74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        1      0      0      2
  SIGLEC14 WILD-TYPE     32     31     27     17
D2195V11, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 31
  CLUS_3                0                 27
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC14 MUTATED        1      0      1      1
  SIGLEC14 WILD-TYPE     53     10     23     21
D2195V12, multiclass
        clus
vv       SIGLEC14 MUTATED SIGLEC14 WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                0                 10
  CLUS_3                1                 23
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2196) Variable = CALCR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCR MUTATED        1      1      0      3
  CALCR WILD-TYPE     45     57     64     40
D2196V1, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CALCR MUTATED        2      2      1
  CALCR WILD-TYPE     49     81     76
D2196V2, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             2              49
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCR MUTATED        7      4      1      0
  CALCR WILD-TYPE    171    179    100     20
D2196V3, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             7             171
  CLUS_2             4             179
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CALCR MUTATED        4      2      1
  CALCR WILD-TYPE     83     78     99
D2196V4, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CALCR MUTATED        3      8      1
  CALCR WILD-TYPE     86    152    137
D2196V5, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             3              86
  CLUS_2             8             152
  CLUS_3             1             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CALCR MUTATED        4      6      2
  CALCR WILD-TYPE    178    127     70
D2196V6, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             4             178
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCR MUTATED        3      1      2      6
  CALCR WILD-TYPE    109     95     90    180
D2196V7, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             3             109
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CALCR MUTATED        2      0      1      2      2      2      3
  CALCR WILD-TYPE     58     50     48     38     61    123     96
D2196V8, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             2              58
  CLUS_2             0              50
  CLUS_3             1              48
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCR MUTATED        3      4      1      4
  CALCR WILD-TYPE    127     74     67    192
D2196V9, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             3             127
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             4             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CALCR MUTATED        1      2      1      3      3      0      0      0
  CALCR WILD-TYPE     39     60     27     77     66     48     43     28
                 vv
clus              CLUS_9
  CALCR MUTATED        2
  CALCR WILD-TYPE     72
D2196V10, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             3              77
  CLUS_5             3              66
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCR MUTATED        0      3      0      1
  CALCR WILD-TYPE     33     28     27     18
D2196V11, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              28
  CLUS_3             0              27
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCR MUTATED        1      1      1      1
  CALCR WILD-TYPE     53      9     23     21
D2196V12, multiclass
        clus
vv       CALCR MUTATED CALCR WILD-TYPE
  CLUS_1             1              53
  CLUS_2             1               9
  CLUS_3             1              23
  CLUS_4             1              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2197) Variable = TXNRD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNRD1 MUTATED        1      0      0      2
  TXNRD1 WILD-TYPE     45     58     64     41
D2197V1, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNRD1 MUTATED        2      1      0
  TXNRD1 WILD-TYPE     49     82     77
D2197V2, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              2               49
  CLUS_2              1               82
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNRD1 MUTATED        7      1      1      0
  TXNRD1 WILD-TYPE    171    182    100     20
D2197V3, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNRD1 MUTATED        4      0      2
  TXNRD1 WILD-TYPE     83     80     98
D2197V4, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              4               83
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNRD1 MUTATED        0      0      6
  TXNRD1 WILD-TYPE     89    160    132
D2197V5, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              0              160
  CLUS_3              6              132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TXNRD1 MUTATED        5      1      0
  TXNRD1 WILD-TYPE    177    132     72
D2197V6, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              5              177
  CLUS_2              1              132
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNRD1 MUTATED        1      0      5      3
  TXNRD1 WILD-TYPE    111     96     87    183
D2197V7, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              0               96
  CLUS_3              5               87
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TXNRD1 MUTATED        1      0      4      0      1      0      3
  TXNRD1 WILD-TYPE     59     50     45     40     62    125     96
D2197V8, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              3               96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNRD1 MUTATED        2      3      2      1
  TXNRD1 WILD-TYPE    128     75     66    195
D2197V9, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              3               75
  CLUS_3              2               66
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TXNRD1 MUTATED        0      3      0      1      1      1      1      0
  TXNRD1 WILD-TYPE     40     59     28     79     68     47     42     28
                  vv
clus               CLUS_9
  TXNRD1 MUTATED        1
  TXNRD1 WILD-TYPE     73
D2197V10, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              1               79
  CLUS_5              1               68
  CLUS_6              1               47
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNRD1 MUTATED        2      0      0      3
  TXNRD1 WILD-TYPE     31     31     27     16
D2197V11, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNRD1 MUTATED        4      0      0      1
  TXNRD1 WILD-TYPE     50     10     24     21
D2197V12, multiclass
        clus
vv       TXNRD1 MUTATED TXNRD1 WILD-TYPE
  CLUS_1              4               50
  CLUS_2              0               10
  CLUS_3              0               24
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2198) Variable = ZFP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP1 MUTATED        1      0      0      1
  ZFP1 WILD-TYPE     45     58     64     42
D2198V1, multiclass
[1] "Remove cluster labels:" "ZFP1 MUTATED"          
clus
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AY-4071 
"ZFP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP1 MUTATED        1      1      0
  ZFP1 WILD-TYPE     50     82     77
D2198V2, multiclass
[1] "Remove cluster labels:" "ZFP1 MUTATED"          
clus
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             2            209 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3950     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3979 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689     TCGA-AF-2691 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3586 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594     TCGA-AG-3598 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601     TCGA-AG-3602 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609     TCGA-AG-3611 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3885 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025     TCGA-AG-A026 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AY-4070 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AY-4071 
"ZFP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP1 MUTATED        4      0      0      0
  ZFP1 WILD-TYPE    174    183    101     20
D2198V3, multiclass
        clus
vv       ZFP1 MUTATED ZFP1 WILD-TYPE
  CLUS_1            4            174
  CLUS_2            0            183
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP1 MUTATED        1      1      0
  ZFP1 WILD-TYPE     86     79    100
D2198V4, multiclass
[1] "Remove cluster labels:" "ZFP1 MUTATED"          
clus
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             2            265 
    TCGA-A6-2671     TCGA-A6-2677     TCGA-A6-3809     TCGA-A6-3810 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-4105     TCGA-A6-5656     TCGA-A6-5657     TCGA-A6-5659 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662     TCGA-A6-5664 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137     TCGA-A6-6138 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648     TCGA-A6-6649 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653     TCGA-A6-6654 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502     TCGA-AA-3511 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3655     TCGA-AA-3660     TCGA-AA-3662     TCGA-AA-3663 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3697     TCGA-AA-3712     TCGA-AA-3713     TCGA-AD-5900 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AD-6548     TCGA-AD-6888     TCGA-AD-6889     TCGA-AD-6895 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AD-6899     TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AD-6965     TCGA-AF-2687     TCGA-AF-2693     TCGA-AF-4110 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-6136     TCGA-AF-6655     TCGA-AF-6672     TCGA-AG-3731 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3732     TCGA-AG-3742     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02N     TCGA-AG-A036 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AH-6544     TCGA-AH-6547     TCGA-AH-6549     TCGA-AH-6643 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AH-6644     TCGA-AU-3779     TCGA-AU-6004     TCGA-AY-5543 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386     TCGA-AZ-4315 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4681     TCGA-AZ-4682 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-5403     TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-6600     TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-6606     TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CA-5255     TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CA-6716     TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CI-6619     TCGA-CI-6620     TCGA-CI-6621     TCGA-CI-6622 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CI-6624     TCGA-CK-4947     TCGA-CK-4948     TCGA-CK-4950 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-4952     TCGA-CK-5912     TCGA-CK-5913     TCGA-CK-5914 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-5915     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5917     TCGA-CL-5918 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-4743     TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-4752     TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5349     TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5863     TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6162     TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6166     TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6170     TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6675     TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6679     TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-5538 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-5539     TCGA-D5-5540     TCGA-D5-5541     TCGA-D5-6529 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6532     TCGA-D5-6533     TCGA-D5-6534     TCGA-D5-6535 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6537     TCGA-D5-6538     TCGA-D5-6539 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6540     TCGA-D5-6541     TCGA-D5-6898     TCGA-D5-6920 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6922     TCGA-D5-6923     TCGA-D5-6924     TCGA-D5-6926 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6927     TCGA-D5-6928     TCGA-D5-6929     TCGA-D5-6930 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6931     TCGA-D5-6932     TCGA-D5-7000     TCGA-DC-5337 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XD     TCGA-DM-A0XF     TCGA-DM-A1D0 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1D4     TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1D9     TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1HB     TCGA-DM-A282     TCGA-DM-A285     TCGA-DM-A28C 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A28E     TCGA-DM-A28F     TCGA-DM-A28G     TCGA-DM-A28H 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A28K     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G5-6641 
"ZFP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP1 MUTATED        0      2      0
  ZFP1 WILD-TYPE     89    158    138
D2198V5, multiclass
[1] "Remove cluster labels:" "ZFP1 MUTATED"          
clus
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655     TCGA-AA-3664 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681     TCGA-AA-3688 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697     TCGA-AA-3710 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715     TCGA-AA-3811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848     TCGA-AA-3850 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856     TCGA-AA-3861 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950     TCGA-AA-3955 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E     TCGA-AA-A00F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A022     TCGA-AA-A024     TCGA-AA-A029 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02K 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AD-6899     TCGA-AD-6965     TCGA-AF-2689     TCGA-AF-3400 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AF-5654     TCGA-AF-6136     TCGA-AF-6655 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3574     TCGA-AG-3578     TCGA-AG-3580 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609     TCGA-AG-3612 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3731     TCGA-AG-3742     TCGA-AG-3878 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3885     TCGA-AG-3893 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-6004 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4682 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6621 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918     TCGA-CM-4743 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G5-6641 
"ZFP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZFP1 MUTATED        0      2      0
  ZFP1 WILD-TYPE    182    131     72
D2198V6, multiclass
[1] "Remove cluster labels:" "ZFP1 MUTATED"          
clus
  ZFP1 MUTATED ZFP1 WILD-TYPE 
             2            385 
    TCGA-A6-2671     TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-A6-5656     TCGA-A6-5657 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-5659     TCGA-A6-5660     TCGA-A6-5661     TCGA-A6-5662 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-5664     TCGA-A6-5665     TCGA-A6-5666     TCGA-A6-6137 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6138     TCGA-A6-6141     TCGA-A6-6142     TCGA-A6-6648 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6652     TCGA-A6-6653 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6780     TCGA-A6-6781     TCGA-A6-6782 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3489     TCGA-AA-3492     TCGA-AA-3496     TCGA-AA-3502 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3511     TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3520     TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3534     TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3554     TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3655     TCGA-AA-3664 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681     TCGA-AA-3688 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3697     TCGA-AA-3710 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3712     TCGA-AA-3713     TCGA-AA-3715     TCGA-AA-3811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848     TCGA-AA-3850 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856     TCGA-AA-3861 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3950     TCGA-AA-3955 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00E     TCGA-AA-A00F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A022     TCGA-AA-A024     TCGA-AA-A029 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02K 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AD-6899     TCGA-AD-6965     TCGA-AF-2689     TCGA-AF-3400 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AF-5654     TCGA-AF-6136     TCGA-AF-6655 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AF-6672     TCGA-AG-3574     TCGA-AG-3578     TCGA-AG-3580 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3609     TCGA-AG-3612 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3731     TCGA-AG-3742     TCGA-AG-3878 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3885     TCGA-AG-3893 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A036     TCGA-AH-6544     TCGA-AH-6547 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AH-6644     TCGA-AU-6004 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AY-5543     TCGA-AY-6196     TCGA-AY-6197     TCGA-AY-6386 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-4315     TCGA-AZ-4323     TCGA-AZ-4616     TCGA-AZ-4682 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-5407     TCGA-AZ-6598     TCGA-AZ-6599     TCGA-AZ-6600 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6606 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-AZ-6607     TCGA-AZ-6608     TCGA-CA-5254     TCGA-CA-5255 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CA-5796     TCGA-CA-5797     TCGA-CA-6715     TCGA-CA-6716 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CA-6717     TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6621 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-5914     TCGA-CK-5916     TCGA-CK-6746     TCGA-CK-6747 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CK-6748     TCGA-CK-6751     TCGA-CL-5918     TCGA-CM-4743 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-4744     TCGA-CM-4746     TCGA-CM-4747     TCGA-CM-4752 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5341     TCGA-CM-5344     TCGA-CM-5348     TCGA-CM-5349 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5860     TCGA-CM-5861     TCGA-CM-5862     TCGA-CM-5863 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-5864     TCGA-CM-5868     TCGA-CM-6161     TCGA-CM-6162 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6163     TCGA-CM-6164     TCGA-CM-6165     TCGA-CM-6166 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6167     TCGA-CM-6168     TCGA-CM-6169     TCGA-CM-6170 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6171     TCGA-CM-6172     TCGA-CM-6674     TCGA-CM-6675 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5538     TCGA-D5-5539     TCGA-D5-5540 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-5541     TCGA-D5-6529     TCGA-D5-6532     TCGA-D5-6533 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6534     TCGA-D5-6535     TCGA-D5-6536     TCGA-D5-6537 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6538     TCGA-D5-6539     TCGA-D5-6540     TCGA-D5-6541 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6898     TCGA-D5-6920     TCGA-D5-6922     TCGA-D5-6923 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6924     TCGA-D5-6926     TCGA-D5-6927     TCGA-D5-6928 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-D5-6930     TCGA-D5-6931     TCGA-D5-6932     TCGA-DC-5337 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6155     TCGA-DC-6157     TCGA-DC-6158 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DC-6160     TCGA-DC-6681     TCGA-DC-6682     TCGA-DC-6683 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A0X9     TCGA-DM-A0XF     TCGA-DM-A1D0     TCGA-DM-A1D4 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1D6     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1DB     TCGA-DM-A1HA     TCGA-DM-A1HB 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A282     TCGA-DM-A28C     TCGA-DM-A28E     TCGA-DM-A28F 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DM-A28G     TCGA-DT-5265     TCGA-DY-A0XA     TCGA-DY-A1DC 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-DY-A1DD     TCGA-DY-A1DF     TCGA-DY-A1DG     TCGA-DY-A1H8 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-EF-5830     TCGA-EI-6506     TCGA-EI-6507     TCGA-EI-6508 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-EI-6510     TCGA-F4-6459     TCGA-F4-6460     TCGA-F4-6569 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6570     TCGA-F4-6703     TCGA-F4-6704     TCGA-F4-6805 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6806     TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F4-6854     TCGA-F4-6855     TCGA-F4-6856     TCGA-F5-6464 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-F5-6812     TCGA-F5-6813     TCGA-G4-6293     TCGA-G4-6299 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6303     TCGA-G4-6304     TCGA-G4-6306     TCGA-G4-6307 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6310     TCGA-G4-6315     TCGA-G4-6317 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6321     TCGA-G4-6323     TCGA-G4-6586     TCGA-G4-6588 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G4-6625     TCGA-G4-6626     TCGA-G4-6628     TCGA-G5-6235 
"ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" "ZFP1 WILD-TYPE" 
    TCGA-G5-6641 
"ZFP1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP1 MUTATED        1      0      0      3
  ZFP1 WILD-TYPE    111     96     92    183
D2198V7, multiclass
        clus
vv       ZFP1 MUTATED ZFP1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            0             96
  CLUS_3            0             92
  CLUS_4            3            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZFP1 MUTATED        0      1      0      0      0      0      3
  ZFP1 WILD-TYPE     60     49     49     40     63    125     96
D2198V8, multiclass
        clus
vv       ZFP1 MUTATED ZFP1 WILD-TYPE
  CLUS_1            0             60
  CLUS_2            1             49
  CLUS_3            0             49
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP1 MUTATED        1      0      0      3
  ZFP1 WILD-TYPE    129     78     68    193
D2198V9, multiclass
        clus
vv       ZFP1 MUTATED ZFP1 WILD-TYPE
  CLUS_1            1            129
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            3            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  ZFP1 MUTATED        1      0      1      0      1      0      0      0      1
  ZFP1 WILD-TYPE     39     62     27     80     68     48     43     28     73
D2198V10, multiclass
        clus
vv       ZFP1 MUTATED ZFP1 WILD-TYPE
  CLUS_1            1             39
  CLUS_2            0             62
  CLUS_3            1             27
  CLUS_4            0             80
  CLUS_5            1             68
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP1 MUTATED        0      0      0      0
  ZFP1 WILD-TYPE     33     31     27     19
D2198V11, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP1 MUTATED        0      0      0      0
  ZFP1 WILD-TYPE     54     10     24     22
D2198V12, multiclass

Clustering(2199) Variable = FAM199X MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM199X MUTATED        2      0      0      0
  FAM199X WILD-TYPE     44     58     64     43
D2199V1, multiclass
[1] "Remove cluster labels:" "FAM199X MUTATED"       
clus
  FAM199X MUTATED FAM199X WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AY-4071 
"FAM199X WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM199X MUTATED        1      1      0
  FAM199X WILD-TYPE     50     82     77
D2199V2, multiclass
[1] "Remove cluster labels:" "FAM199X MUTATED"       
clus
  FAM199X MUTATED FAM199X WILD-TYPE 
                2               209 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950        TCGA-AA-3952 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3968 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979        TCGA-AA-3980 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01Q 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689        TCGA-AF-2691 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025        TCGA-AG-A026 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AY-4070 
"FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" "FAM199X WILD-TYPE" 
       TCGA-AY-4071 
"FAM199X WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM199X MUTATED        4      2      4      0
  FAM199X WILD-TYPE    174    181     97     20
D2199V3, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               4               174
  CLUS_2               2               181
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM199X MUTATED        2      2      4
  FAM199X WILD-TYPE     85     78     96
D2199V4, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               2                85
  CLUS_2               2                78
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM199X MUTATED        1      2      5
  FAM199X WILD-TYPE     88    158    133
D2199V5, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               5               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM199X MUTATED        6      2      0
  FAM199X WILD-TYPE    176    131     72
D2199V6, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               6               176
  CLUS_2               2               131
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM199X MUTATED        3      2      3      2
  FAM199X WILD-TYPE    109     94     89    184
D2199V7, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               3               109
  CLUS_2               2                94
  CLUS_3               3                89
  CLUS_4               2               184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM199X MUTATED        2      2      2      0      2      1      1
  FAM199X WILD-TYPE     58     48     47     40     61    124     98
D2199V8, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               2                58
  CLUS_2               2                48
  CLUS_3               2                47
  CLUS_4               0                40
  CLUS_5               2                61
  CLUS_6               1               124
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM199X MUTATED        6      2      0      2
  FAM199X WILD-TYPE    124     76     68    194
D2199V9, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               6               124
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  FAM199X MUTATED        0      3      1      3      1      0      0      2
  FAM199X WILD-TYPE     40     59     27     77     68     48     43     26
                   vv
clus                CLUS_9
  FAM199X MUTATED        0
  FAM199X WILD-TYPE     74
D2199V10, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               0                40
  CLUS_2               3                59
  CLUS_3               1                27
  CLUS_4               3                77
  CLUS_5               1                68
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               2                26
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM199X MUTATED        1      1      0      1
  FAM199X WILD-TYPE     32     30     27     18
D2199V11, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                30
  CLUS_3               0                27
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM199X MUTATED        1      1      1      0
  FAM199X WILD-TYPE     53      9     23     22
D2199V12, multiclass
        clus
vv       FAM199X MUTATED FAM199X WILD-TYPE
  CLUS_1               1                53
  CLUS_2               1                 9
  CLUS_3               1                23
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2200) Variable = GABRB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRB2 MUTATED        1      1      0      4
  GABRB2 WILD-TYPE     45     57     64     39
D2200V1, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRB2 MUTATED        1      1      4
  GABRB2 WILD-TYPE     50     82     73
D2200V2, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              4               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRB2 MUTATED        7      1      2      0
  GABRB2 WILD-TYPE    171    182     99     20
D2200V3, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              1              182
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRB2 MUTATED        2      0      1
  GABRB2 WILD-TYPE     85     80     99
D2200V4, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              0               80
  CLUS_3              1               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRB2 MUTATED        4      4      2
  GABRB2 WILD-TYPE     85    156    136
D2200V5, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              4              156
  CLUS_3              2              136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRB2 MUTATED        3      4      3
  GABRB2 WILD-TYPE    179    129     69
D2200V6, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              4              129
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRB2 MUTATED        0      3      2      5
  GABRB2 WILD-TYPE    112     93     90    181
D2200V7, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GABRB2 MUTATED        1      0      3      2      0      2      2
  GABRB2 WILD-TYPE     59     50     46     38     63    123     97
D2200V8, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1               59
  CLUS_2              0               50
  CLUS_3              3               46
  CLUS_4              2               38
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRB2 MUTATED        1      2      1      6
  GABRB2 WILD-TYPE    129     76     67    190
D2200V9, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              6              190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GABRB2 MUTATED        0      2      1      0      4      1      0      1
  GABRB2 WILD-TYPE     40     60     27     80     65     47     43     27
                  vv
clus               CLUS_9
  GABRB2 MUTATED        1
  GABRB2 WILD-TYPE     73
D2200V10, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRB2 MUTATED        0      1      0      2
  GABRB2 WILD-TYPE     33     30     27     17
D2200V11, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRB2 MUTATED        2      0      1      0
  GABRB2 WILD-TYPE     52     10     23     22
D2200V12, multiclass
        clus
vv       GABRB2 MUTATED GABRB2 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2201) Variable = NAA15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA15 MUTATED        2      0      0      2
  NAA15 WILD-TYPE     44     58     64     41
D2201V1, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA15 MUTATED        3      1      0
  NAA15 WILD-TYPE     48     82     77
D2201V2, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             1              82
  CLUS_3             0              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA15 MUTATED       12      1      2      0
  NAA15 WILD-TYPE    166    182     99     20
D2201V3, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1            12             166
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA15 MUTATED        5      0      4
  NAA15 WILD-TYPE     82     80     96
D2201V4, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             0              80
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA15 MUTATED        0      4     10
  NAA15 WILD-TYPE     89    156    128
D2201V5, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             4             156
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA15 MUTATED        8      5      1
  NAA15 WILD-TYPE    174    128     71
D2201V6, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             5             128
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA15 MUTATED        1      4      5      5
  NAA15 WILD-TYPE    111     92     87    181
D2201V7, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAA15 MUTATED        1      2      5      0      2      0      5
  NAA15 WILD-TYPE     59     48     44     40     61    125     94
D2201V8, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA15 MUTATED        4      3      1      6
  NAA15 WILD-TYPE    126     75     67    190
D2201V9, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             3              75
  CLUS_3             1              67
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  NAA15 MUTATED        0      3      3      0      6      0      0      0
  NAA15 WILD-TYPE     40     59     25     80     63     48     43     28
                 vv
clus              CLUS_9
  NAA15 MUTATED        2
  NAA15 WILD-TYPE     72
D2201V10, multiclass
        clus
vv       NAA15 MUTATED NAA15 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             3              59
  CLUS_3             3              25
  CLUS_4             0              80
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA15 MUTATED        0      0      0      1
  NAA15 WILD-TYPE     33     31     27     18
D2201V11, multiclass
[1] "Remove cluster labels:" "NAA15 MUTATED"         
clus
  NAA15 MUTATED NAA15 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-G5-6641 
"NAA15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA15 MUTATED        1      0      0      0
  NAA15 WILD-TYPE     53     10     24     22
D2201V12, multiclass
[1] "Remove cluster labels:" "NAA15 MUTATED"         
clus
  NAA15 MUTATED NAA15 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-AZ-6601      TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" "NAA15 WILD-TYPE" 
     TCGA-G5-6641 
"NAA15 WILD-TYPE" 

Clustering(2202) Variable = GNA15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA15 MUTATED        2      0      0      0
  GNA15 WILD-TYPE     44     58     64     43
D2202V1, multiclass
[1] "Remove cluster labels:" "GNA15 MUTATED"         
clus
  GNA15 MUTATED GNA15 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00U      TCGA-AA-A00W 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01F 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AY-4071 
"GNA15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA15 MUTATED        2      0      0
  GNA15 WILD-TYPE     49     83     77
D2202V2, multiclass
[1] "Remove cluster labels:" "GNA15 MUTATED"         
clus
  GNA15 MUTATED GNA15 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3872      TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3950      TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00U      TCGA-AA-A00W 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01F 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01Q 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689      TCGA-AF-2691 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3586 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594      TCGA-AG-3598 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601      TCGA-AG-3602 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609      TCGA-AG-3611 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3885 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AY-4071 
"GNA15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA15 MUTATED        4      1      1      0
  GNA15 WILD-TYPE    174    182    100     20
D2202V3, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             4             174
  CLUS_2             1             182
  CLUS_3             1             100
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA15 MUTATED        2      0      1
  GNA15 WILD-TYPE     85     80     99
D2202V4, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             2              85
  CLUS_2             0              80
  CLUS_3             1              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA15 MUTATED        1      1      3
  GNA15 WILD-TYPE     88    159    135
D2202V5, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             1             159
  CLUS_3             3             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNA15 MUTATED        3      1      1
  GNA15 WILD-TYPE    179    132     71
D2202V6, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             3             179
  CLUS_2             1             132
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA15 MUTATED        1      1      2      2
  GNA15 WILD-TYPE    111     95     90    184
D2202V7, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             1              95
  CLUS_3             2              90
  CLUS_4             2             184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GNA15 MUTATED        1      1      2      0      0      0      2
  GNA15 WILD-TYPE     59     49     47     40     63    125     97
D2202V8, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             1              49
  CLUS_3             2              47
  CLUS_4             0              40
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             2              97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA15 MUTATED        1      2      1      1
  GNA15 WILD-TYPE    129     76     67    195
D2202V9, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             1             129
  CLUS_2             2              76
  CLUS_3             1              67
  CLUS_4             1             195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  GNA15 MUTATED        0      2      1      0      1      0      0      0
  GNA15 WILD-TYPE     40     60     27     80     68     48     43     28
                 vv
clus              CLUS_9
  GNA15 MUTATED        1
  GNA15 WILD-TYPE     73
D2202V10, multiclass
        clus
vv       GNA15 MUTATED GNA15 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             0              80
  CLUS_5             1              68
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA15 MUTATED        0      0      0      1
  GNA15 WILD-TYPE     33     31     27     18
D2202V11, multiclass
[1] "Remove cluster labels:" "GNA15 MUTATED"         
clus
  GNA15 MUTATED GNA15 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-G5-6641 
"GNA15 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNA15 MUTATED        1      0      0      0
  GNA15 WILD-TYPE     53     10     24     22
D2202V12, multiclass
[1] "Remove cluster labels:" "GNA15 MUTATED"         
clus
  GNA15 MUTATED GNA15 WILD-TYPE 
              1             109 
     TCGA-A6-5657      TCGA-A6-6137      TCGA-A6-6138      TCGA-A6-6141 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-6142      TCGA-A6-6649      TCGA-A6-6651      TCGA-A6-6653 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-A6-6654      TCGA-A6-6781      TCGA-A6-6782      TCGA-AA-3489 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AA-3511      TCGA-AD-5900      TCGA-AD-6548      TCGA-AD-6889 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AD-6901      TCGA-AD-6963      TCGA-AD-6964      TCGA-AD-6965 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AF-2687      TCGA-AF-4110      TCGA-AF-6655      TCGA-AF-6672 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AG-3731      TCGA-AG-3732      TCGA-AH-6544      TCGA-AH-6547 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AH-6549      TCGA-AH-6643      TCGA-AY-6196      TCGA-AZ-4323 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AZ-4616      TCGA-AZ-5403      TCGA-AZ-6598      TCGA-AZ-6600 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-AZ-6603      TCGA-AZ-6605      TCGA-AZ-6607      TCGA-CA-6718 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CA-6719      TCGA-CI-6619      TCGA-CI-6620      TCGA-CI-6621 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CI-6624      TCGA-CK-5916      TCGA-CK-6748      TCGA-CL-5918 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CM-5860      TCGA-CM-6167      TCGA-CM-6674      TCGA-CM-6676 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-CM-6677      TCGA-CM-6678      TCGA-CM-6679      TCGA-CM-6680 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-D5-5537      TCGA-D5-6533      TCGA-D5-6534      TCGA-D5-6536 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-D5-6922      TCGA-D5-6924      TCGA-DC-5337      TCGA-DC-5869 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DC-6157      TCGA-DC-6158      TCGA-DC-6681      TCGA-DC-6682 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DC-6683      TCGA-DM-A0XD      TCGA-DM-A0XF      TCGA-DM-A1D0 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DM-A1D7      TCGA-DM-A1D8      TCGA-DM-A1D9      TCGA-DM-A1DA 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DM-A1HA      TCGA-DM-A282      TCGA-DM-A285      TCGA-DM-A28F 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-DY-A1DC      TCGA-DY-A1DD      TCGA-DY-A1DG      TCGA-DY-A1H8 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-EI-6506      TCGA-EI-6507      TCGA-F4-6459      TCGA-F4-6460 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F4-6569      TCGA-F4-6570      TCGA-F4-6704      TCGA-F4-6805 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F4-6807      TCGA-F4-6808      TCGA-F4-6809      TCGA-F5-6464 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F5-6465      TCGA-F5-6571      TCGA-F5-6702      TCGA-F5-6811 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-F5-6812      TCGA-G4-6299      TCGA-G4-6303      TCGA-G4-6306 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-G4-6309      TCGA-G4-6625      TCGA-G4-6628      TCGA-G5-6235 
"GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" "GNA15 WILD-TYPE" 
     TCGA-G5-6641 
"GNA15 WILD-TYPE" 

Clustering(2203) Variable = ZNF274 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF274 MUTATED        0      0      1      1
  ZNF274 WILD-TYPE     46     58     63     42
D2203V1, multiclass
[1] "Remove cluster labels:" "ZNF274 MUTATED"        
clus
  ZNF274 MUTATED ZNF274 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF274 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF274 MUTATED        1      1      0
  ZNF274 WILD-TYPE     50     82     77
D2203V2, multiclass
[1] "Remove cluster labels:" "ZNF274 MUTATED"        
clus
  ZNF274 MUTATED ZNF274 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850       TCGA-AA-3851 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3950       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" "ZNF274 WILD-TYPE" 
      TCGA-AY-4071 
"ZNF274 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF274 MUTATED        4      2      1      0
  ZNF274 WILD-TYPE    174    181    100     20
D2203V3, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              2              181
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF274 MUTATED        3      0      2
  ZNF274 WILD-TYPE     84     80     98
D2203V4, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF274 MUTATED        1      0      5
  ZNF274 WILD-TYPE     88    160    133
D2203V5, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF274 MUTATED        4      1      1
  ZNF274 WILD-TYPE    178    132     71
D2203V6, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              1              132
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF274 MUTATED        0      3      2      2
  ZNF274 WILD-TYPE    112     93     90    184
D2203V7, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF274 MUTATED        0      1      2      1      1      1      1
  ZNF274 WILD-TYPE     60     49     47     39     62    124     98
D2203V8, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF274 MUTATED        1      2      1      2
  ZNF274 WILD-TYPE    129     76     67    194
D2203V9, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              1              129
  CLUS_2              2               76
  CLUS_3              1               67
  CLUS_4              2              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF274 MUTATED        0      2      0      0      2      0      0      0
  ZNF274 WILD-TYPE     40     60     28     80     67     48     43     28
                  vv
clus               CLUS_9
  ZNF274 MUTATED        2
  ZNF274 WILD-TYPE     72
D2203V10, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              2               60
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF274 MUTATED        1      1      0      1
  ZNF274 WILD-TYPE     32     30     27     18
D2203V11, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF274 MUTATED        2      0      1      0
  ZNF274 WILD-TYPE     52     10     23     22
D2203V12, multiclass
        clus
vv       ZNF274 MUTATED ZNF274 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2204) Variable = ZNF763 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF763 MUTATED        2      0      1      0
  ZNF763 WILD-TYPE     44     58     63     43
D2204V1, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               58
  CLUS_3              1               63
  CLUS_4              0               43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF763 MUTATED        1      1      1
  ZNF763 WILD-TYPE     50     82     76
D2204V2, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              1               50
  CLUS_2              1               82
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF763 MUTATED        7      3      1      0
  ZNF763 WILD-TYPE    171    180    100     20
D2204V3, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              7              171
  CLUS_2              3              180
  CLUS_3              1              100
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF763 MUTATED        2      1      5
  ZNF763 WILD-TYPE     85     79     95
D2204V4, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF763 MUTATED        1      3      5
  ZNF763 WILD-TYPE     88    157    133
D2204V5, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF763 MUTATED        7      2      0
  ZNF763 WILD-TYPE    175    131     72
D2204V6, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF763 MUTATED        1      2      4      4
  ZNF763 WILD-TYPE    111     94     88    182
D2204V7, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               94
  CLUS_3              4               88
  CLUS_4              4              182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF763 MUTATED        2      1      3      0      1      2      2
  ZNF763 WILD-TYPE     58     49     46     40     62    123     97
D2204V8, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              1               49
  CLUS_3              3               46
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF763 MUTATED        5      1      0      5
  ZNF763 WILD-TYPE    125     77     68    191
D2204V9, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              0               68
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF763 MUTATED        1      1      0      2      4      1      0      0
  ZNF763 WILD-TYPE     39     61     28     78     65     47     43     28
                  vv
clus               CLUS_9
  ZNF763 MUTATED        2
  ZNF763 WILD-TYPE     72
D2204V10, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              0               28
  CLUS_4              2               78
  CLUS_5              4               65
  CLUS_6              1               47
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF763 MUTATED        1      0      0      2
  ZNF763 WILD-TYPE     32     31     27     17
D2204V11, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF763 MUTATED        1      0      1      1
  ZNF763 WILD-TYPE     53     10     23     21
D2204V12, multiclass
        clus
vv       ZNF763 MUTATED ZNF763 WILD-TYPE
  CLUS_1              1               53
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2205) Variable = PRKRIR MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRIR MUTATED        1      1      0      1
  PRKRIR WILD-TYPE     45     57     64     42
D2205V1, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               57
  CLUS_3              0               64
  CLUS_4              1               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKRIR MUTATED        0      2      1
  PRKRIR WILD-TYPE     51     81     76
D2205V2, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              0               51
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRIR MUTATED        9      3      0      0
  PRKRIR WILD-TYPE    169    180    101     20
D2205V3, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              9              169
  CLUS_2              3              180
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKRIR MUTATED        2      1      5
  PRKRIR WILD-TYPE     85     79     95
D2205V4, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              2               85
  CLUS_2              1               79
  CLUS_3              5               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKRIR MUTATED        0      6      3
  PRKRIR WILD-TYPE     89    154    135
D2205V5, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              154
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKRIR MUTATED        3      6      0
  PRKRIR WILD-TYPE    179    127     72
D2205V6, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              3              179
  CLUS_2              6              127
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRIR MUTATED        2      6      2      2
  PRKRIR WILD-TYPE    110     90     90    184
D2205V7, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              2              110
  CLUS_2              6               90
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRKRIR MUTATED        0      2      5      1      0      2      2
  PRKRIR WILD-TYPE     60     48     44     39     63    123     97
D2205V8, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              0               60
  CLUS_2              2               48
  CLUS_3              5               44
  CLUS_4              1               39
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              2               97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRIR MUTATED        5      1      2      4
  PRKRIR WILD-TYPE    125     77     66    192
D2205V9, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              5              125
  CLUS_2              1               77
  CLUS_3              2               66
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  PRKRIR MUTATED        2      3      0      0      2      0      2      1
  PRKRIR WILD-TYPE     38     59     28     80     67     48     41     27
                  vv
clus               CLUS_9
  PRKRIR MUTATED        2
  PRKRIR WILD-TYPE     72
D2205V10, multiclass
        clus
vv       PRKRIR MUTATED PRKRIR WILD-TYPE
  CLUS_1              2               38
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              2               41
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRIR MUTATED        1      0      0      0
  PRKRIR WILD-TYPE     32     31     27     19
D2205V11, multiclass
[1] "Remove cluster labels:" "PRKRIR MUTATED"        
clus
  PRKRIR MUTATED PRKRIR WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-G5-6641 
"PRKRIR WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKRIR MUTATED        1      0      0      0
  PRKRIR WILD-TYPE     53     10     24     22
D2205V12, multiclass
[1] "Remove cluster labels:" "PRKRIR MUTATED"        
clus
  PRKRIR MUTATED PRKRIR WILD-TYPE 
               1              109 
      TCGA-A6-5657       TCGA-A6-6137       TCGA-A6-6138       TCGA-A6-6141 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-A6-6142       TCGA-A6-6649       TCGA-A6-6651       TCGA-A6-6653 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-A6-6654       TCGA-A6-6781       TCGA-A6-6782       TCGA-AA-3489 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AA-3511       TCGA-AD-5900       TCGA-AD-6548       TCGA-AD-6889 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AD-6901       TCGA-AD-6963       TCGA-AD-6964       TCGA-AD-6965 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AF-2687       TCGA-AF-4110       TCGA-AF-6655       TCGA-AF-6672 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AG-3731       TCGA-AG-3732       TCGA-AH-6544       TCGA-AH-6547 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AH-6549       TCGA-AH-6643       TCGA-AY-6196       TCGA-AZ-4323 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AZ-4616       TCGA-AZ-5403       TCGA-AZ-6598       TCGA-AZ-6600 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-AZ-6601       TCGA-AZ-6603       TCGA-AZ-6605       TCGA-AZ-6607 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CA-6718       TCGA-CA-6719       TCGA-CI-6619       TCGA-CI-6620 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CI-6621       TCGA-CI-6624       TCGA-CK-5916       TCGA-CK-6748 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CL-5918       TCGA-CM-5860       TCGA-CM-6167       TCGA-CM-6674 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-CM-6676       TCGA-CM-6677       TCGA-CM-6678       TCGA-CM-6679 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-D5-5537       TCGA-D5-6533       TCGA-D5-6534       TCGA-D5-6536 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-D5-6922       TCGA-D5-6924       TCGA-DC-5337       TCGA-DC-5869 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DC-6157       TCGA-DC-6158       TCGA-DC-6681       TCGA-DC-6682 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DC-6683       TCGA-DM-A0XD       TCGA-DM-A0XF       TCGA-DM-A1D0 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DM-A1D7       TCGA-DM-A1D8       TCGA-DM-A1D9       TCGA-DM-A1DA 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DM-A1HA       TCGA-DM-A282       TCGA-DM-A285       TCGA-DM-A28F 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-DY-A1DC       TCGA-DY-A1DD       TCGA-DY-A1DG       TCGA-DY-A1H8 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-EI-6506       TCGA-EI-6507       TCGA-F4-6459       TCGA-F4-6460 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F4-6569       TCGA-F4-6570       TCGA-F4-6704       TCGA-F4-6805 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F4-6807       TCGA-F4-6808       TCGA-F4-6809       TCGA-F5-6464 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F5-6465       TCGA-F5-6571       TCGA-F5-6702       TCGA-F5-6811 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-F5-6812       TCGA-G4-6299       TCGA-G4-6303       TCGA-G4-6306 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-G4-6309       TCGA-G4-6625       TCGA-G4-6628       TCGA-G5-6235 
"PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" "PRKRIR WILD-TYPE" 
      TCGA-G5-6641 
"PRKRIR WILD-TYPE" 

Clustering(2206) Variable = PKIA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKIA MUTATED        1      0      0      0
  PKIA WILD-TYPE     45     58     64     43
D2206V1, multiclass
[1] "Remove cluster labels:" "PKIA MUTATED"          
clus
  PKIA MUTATED PKIA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3685 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKIA MUTATED        1      0      0
  PKIA WILD-TYPE     50     83     77
D2206V2, multiclass
[1] "Remove cluster labels:" "PKIA MUTATED"          
clus
  PKIA MUTATED PKIA WILD-TYPE 
             1            210 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-A6-3809     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3561     TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3667     TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3679     TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3685 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3815     TCGA-AA-3818     TCGA-AA-3819 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3860     TCGA-AA-3861     TCGA-AA-3864     TCGA-AA-3866 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870     TCGA-AA-3872 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930     TCGA-AA-3939 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3950 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3968     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02W     TCGA-AF-2689 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3574     TCGA-AG-3575     TCGA-AG-3578     TCGA-AG-3580 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3584 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3586     TCGA-AG-3587     TCGA-AG-3593     TCGA-AG-3594 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3598     TCGA-AG-3599     TCGA-AG-3600     TCGA-AG-3601 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3881     TCGA-AG-3882     TCGA-AG-3883 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3885     TCGA-AG-3887     TCGA-AG-3890     TCGA-AG-3892 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3896     TCGA-AG-3898 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-3901     TCGA-AG-3902     TCGA-AG-3909     TCGA-AG-3999 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4005     TCGA-AG-4007     TCGA-AG-4008 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-4015     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A025 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02X     TCGA-AG-A032 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" "PKIA WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"PKIA WILD-TYPE" "PKIA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKIA MUTATED        7      1      2      0
  PKIA WILD-TYPE    171    182     99     20
D2206V3, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            7            171
  CLUS_2            1            182
  CLUS_3            2             99
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKIA MUTATED        1      2      6
  PKIA WILD-TYPE     86     78     94
D2206V4, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKIA MUTATED        2      1      4
  PKIA WILD-TYPE     87    159    134
D2206V5, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            1            159
  CLUS_3            4            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKIA MUTATED        3      3      1
  PKIA WILD-TYPE    179    130     71
D2206V6, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            3            179
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKIA MUTATED        3      4      2      1
  PKIA WILD-TYPE    109     92     90    185
D2206V7, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             92
  CLUS_3            2             90
  CLUS_4            1            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PKIA MUTATED        1      2      3      1      2      1      0
  PKIA WILD-TYPE     59     48     46     39     61    124     99
D2206V8, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            1             59
  CLUS_2            2             48
  CLUS_3            3             46
  CLUS_4            1             39
  CLUS_5            2             61
  CLUS_6            1            124
  CLUS_7            0             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKIA MUTATED        5      2      1      2
  PKIA WILD-TYPE    125     76     67    194
D2206V9, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            5            125
  CLUS_2            2             76
  CLUS_3            1             67
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  PKIA MUTATED        0      2      0      2      3      1      1      1      0
  PKIA WILD-TYPE     40     60     28     78     66     47     42     27     74
D2206V10, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            2             78
  CLUS_5            3             66
  CLUS_6            1             47
  CLUS_7            1             42
  CLUS_8            1             27
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKIA MUTATED        2      0      0      1
  PKIA WILD-TYPE     31     31     27     18
D2206V11, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKIA MUTATED        1      0      1      1
  PKIA WILD-TYPE     53     10     23     21
D2206V12, multiclass
        clus
vv       PKIA MUTATED PKIA WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             10
  CLUS_3            1             23
  CLUS_4            1             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2207) Variable = SYNJ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        4      0      0      4
  SYNJ1 WILD-TYPE     42     58     64     39
D2207V1, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ1 MUTATED        4      2      2
  SYNJ1 WILD-TYPE     47     81     75
D2207V2, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             2              81
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED       16      2      0      1
  SYNJ1 WILD-TYPE    162    181    101     19
D2207V3, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1            16             162
  CLUS_2             2             181
  CLUS_3             0             101
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ1 MUTATED        4      2      5
  SYNJ1 WILD-TYPE     83     78     95
D2207V4, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             2              78
  CLUS_3             5              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ1 MUTATED        1      5      8
  SYNJ1 WILD-TYPE     88    155    130
D2207V5, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             5             155
  CLUS_3             8             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ1 MUTATED        7      4      3
  SYNJ1 WILD-TYPE    175    129     69
D2207V6, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             4             129
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        2      3      6      8
  SYNJ1 WILD-TYPE    110     93     86    178
D2207V7, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              93
  CLUS_3             6              86
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SYNJ1 MUTATED        2      1      5      2      2      1      6
  SYNJ1 WILD-TYPE     58     49     44     38     61    124     93
D2207V8, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             2              38
  CLUS_5             2              61
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        5      4      1      9
  SYNJ1 WILD-TYPE    125     74     67    187
D2207V9, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             5             125
  CLUS_2             4              74
  CLUS_3             1              67
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SYNJ1 MUTATED        1      4      2      1      6      1      3      1
  SYNJ1 WILD-TYPE     39     58     26     79     63     47     40     27
                 vv
clus              CLUS_9
  SYNJ1 MUTATED        0
  SYNJ1 WILD-TYPE     74
D2207V10, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             4              58
  CLUS_3             2              26
  CLUS_4             1              79
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             3              40
  CLUS_8             1              27
  CLUS_9             0              74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        1      1      0      3
  SYNJ1 WILD-TYPE     32     30     27     16
D2207V11, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              30
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        4      0      1      0
  SYNJ1 WILD-TYPE     50     10     23     22
D2207V12, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2208) Variable = TEX14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX14 MUTATED        4      0      1      2
  TEX14 WILD-TYPE     42     58     63     41
D2208V1, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             2              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX14 MUTATED        5      1      1
  TEX14 WILD-TYPE     46     82     76
D2208V2, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             5              46
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX14 MUTATED       18      4      3      0
  TEX14 WILD-TYPE    160    179     98     20
D2208V3, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1            18             160
  CLUS_2             4             179
  CLUS_3             3              98
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX14 MUTATED        6      4      7
  TEX14 WILD-TYPE     81     76     93
D2208V4, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             6              81
  CLUS_2             4              76
  CLUS_3             7              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX14 MUTATED        3      5     10
  TEX14 WILD-TYPE     86    155    128
D2208V5, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             5             155
  CLUS_3            10             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX14 MUTATED       10      7      1
  TEX14 WILD-TYPE    172    126     71
D2208V6, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1            10             172
  CLUS_2             7             126
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX14 MUTATED        5      6      6      8
  TEX14 WILD-TYPE    107     90     86    178
D2208V7, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             5             107
  CLUS_2             6              90
  CLUS_3             6              86
  CLUS_4             8             178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TEX14 MUTATED        4      5      7      1      1      1      6
  TEX14 WILD-TYPE     56     45     42     39     62    124     93
D2208V8, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             4              56
  CLUS_2             5              45
  CLUS_3             7              42
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             1             124
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX14 MUTATED       11      3      2      9
  TEX14 WILD-TYPE    119     75     66    187
D2208V9, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1            11             119
  CLUS_2             3              75
  CLUS_3             2              66
  CLUS_4             9             187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  TEX14 MUTATED        5      6      0      3      5      1      1      2
  TEX14 WILD-TYPE     35     56     28     77     64     47     42     26
                 vv
clus              CLUS_9
  TEX14 MUTATED        2
  TEX14 WILD-TYPE     72
D2208V10, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             5              35
  CLUS_2             6              56
  CLUS_3             0              28
  CLUS_4             3              77
  CLUS_5             5              64
  CLUS_6             1              47
  CLUS_7             1              42
  CLUS_8             2              26
  CLUS_9             2              72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX14 MUTATED        3      0      2      2
  TEX14 WILD-TYPE     30     31     25     17
D2208V11, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              31
  CLUS_3             2              25
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX14 MUTATED        4      0      1      2
  TEX14 WILD-TYPE     50     10     23     20
D2208V12, multiclass
        clus
vv       TEX14 MUTATED TEX14 WILD-TYPE
  CLUS_1             4              50
  CLUS_2             0              10
  CLUS_3             1              23
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2209) Variable = F9 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F9 MUTATED        2      0      0      4
  F9 WILD-TYPE     44     58     64     39
D2209V1, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          2           44
  CLUS_2          0           58
  CLUS_3          0           64
  CLUS_4          4           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F9 MUTATED        4      2      0
  F9 WILD-TYPE     47     81     77
D2209V2, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          4           47
  CLUS_2          2           81
  CLUS_3          0           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F9 MUTATED       14      4      2      0
  F9 WILD-TYPE    164    179     99     20
D2209V3, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1         14          164
  CLUS_2          4          179
  CLUS_3          2           99
  CLUS_4          0           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F9 MUTATED        7      3      4
  F9 WILD-TYPE     80     77     96
D2209V4, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          7           80
  CLUS_2          3           77
  CLUS_3          4           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F9 MUTATED        4      7      5
  F9 WILD-TYPE     85    153    133
D2209V5, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          4           85
  CLUS_2          7          153
  CLUS_3          5          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F9 MUTATED        8      3      5
  F9 WILD-TYPE    174    130     67
D2209V6, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          8          174
  CLUS_2          3          130
  CLUS_3          5           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F9 MUTATED        5      4      4      7
  F9 WILD-TYPE    107     92     88    179
D2209V7, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          5          107
  CLUS_2          4           92
  CLUS_3          4           88
  CLUS_4          7          179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  F9 MUTATED        3      2      4      1      3      2      5
  F9 WILD-TYPE     57     48     45     39     60    123     94
D2209V8, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          3           57
  CLUS_2          2           48
  CLUS_3          4           45
  CLUS_4          1           39
  CLUS_5          3           60
  CLUS_6          2          123
  CLUS_7          5           94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F9 MUTATED        3      7      3      6
  F9 WILD-TYPE    127     71     65    190
D2209V9, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          3          127
  CLUS_2          7           71
  CLUS_3          3           65
  CLUS_4          6          190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  F9 MUTATED        2      3      1      3      4      3      2      1      0
  F9 WILD-TYPE     38     59     27     77     65     45     41     27     74
D2209V10, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          2           38
  CLUS_2          3           59
  CLUS_3          1           27
  CLUS_4          3           77
  CLUS_5          4           65
  CLUS_6          3           45
  CLUS_7          2           41
  CLUS_8          1           27
  CLUS_9          0           74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F9 MUTATED        2      2      1      2
  F9 WILD-TYPE     31     29     26     17
D2209V11, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          2           31
  CLUS_2          2           29
  CLUS_3          1           26
  CLUS_4          2           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F9 MUTATED        2      0      2      3
  F9 WILD-TYPE     52     10     22     19
D2209V12, multiclass
        clus
vv       F9 MUTATED F9 WILD-TYPE
  CLUS_1          2           52
  CLUS_2          0           10
  CLUS_3          2           22
  CLUS_4          3           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2210) Variable = SMEK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMEK1 MUTATED        1      0      0      1
  SMEK1 WILD-TYPE     45     58     64     42
D2210V1, multiclass
[1] "Remove cluster labels:" "SMEK1 MUTATED"         
clus
  SMEK1 MUTATED SMEK1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3872 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AY-4071 
"SMEK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMEK1 MUTATED        1      0      1
  SMEK1 WILD-TYPE     50     83     76
D2210V2, multiclass
[1] "Remove cluster labels:" "SMEK1 MUTATED"         
clus
  SMEK1 MUTATED SMEK1 WILD-TYPE 
              2             209 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-A6-3809      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3530 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3542      TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3549      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3556      TCGA-AA-3558      TCGA-AA-3560 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3561      TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3666 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3667      TCGA-AA-3672      TCGA-AA-3673      TCGA-AA-3678 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3679      TCGA-AA-3680      TCGA-AA-3681      TCGA-AA-3684 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3688      TCGA-AA-3692      TCGA-AA-3693 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3696      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3812      TCGA-AA-3814      TCGA-AA-3815      TCGA-AA-3818 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831      TCGA-AA-3833 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3845 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3861      TCGA-AA-3864 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3866      TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3872 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3950 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3968      TCGA-AA-3971      TCGA-AA-3972      TCGA-AA-3973 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3976      TCGA-AA-3977      TCGA-AA-3979 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3980      TCGA-AA-3982      TCGA-AA-3984      TCGA-AA-3986 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-3994      TCGA-AA-A004      TCGA-AA-A00A 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W      TCGA-AF-2689 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3574      TCGA-AG-3575      TCGA-AG-3578      TCGA-AG-3580 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3584 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3586      TCGA-AG-3587      TCGA-AG-3593      TCGA-AG-3594 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3598      TCGA-AG-3599      TCGA-AG-3600      TCGA-AG-3601 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3881      TCGA-AG-3882      TCGA-AG-3883 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3885      TCGA-AG-3887      TCGA-AG-3890      TCGA-AG-3892 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3896      TCGA-AG-3898 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-3901      TCGA-AG-3902      TCGA-AG-3909      TCGA-AG-3999 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4005      TCGA-AG-4007      TCGA-AG-4008 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-4015      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A025      TCGA-AG-A026 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AY-4070 
"SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" "SMEK1 WILD-TYPE" 
     TCGA-AY-4071 
"SMEK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMEK1 MUTATED        5      1      2      1
  SMEK1 WILD-TYPE    173    182     99     19
D2210V3, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             5             173
  CLUS_2             1             182
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMEK1 MUTATED        4      0      3
  SMEK1 WILD-TYPE     83     80     97
D2210V4, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             0              80
  CLUS_3             3              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMEK1 MUTATED        0      1      5
  SMEK1 WILD-TYPE     89    159    133
D2210V5, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             159
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMEK1 MUTATED        4      2      0
  SMEK1 WILD-TYPE    178    131     72
D2210V6, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             4             178
  CLUS_2             2             131
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMEK1 MUTATED        0      3      5      1
  SMEK1 WILD-TYPE    112     93     87    185
D2210V7, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             0             112
  CLUS_2             3              93
  CLUS_3             5              87
  CLUS_4             1             185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SMEK1 MUTATED        1      2      3      2      0      0      1
  SMEK1 WILD-TYPE     59     48     46     38     63    125     98
D2210V8, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             3              46
  CLUS_4             2              38
  CLUS_5             0              63
  CLUS_6             0             125
  CLUS_7             1              98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMEK1 MUTATED        4      1      1      3
  SMEK1 WILD-TYPE    126     77     67    193
D2210V9, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             4             126
  CLUS_2             1              77
  CLUS_3             1              67
  CLUS_4             3             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SMEK1 MUTATED        0      2      0      2      2      0      1      1
  SMEK1 WILD-TYPE     40     60     28     78     67     48     42     27
                 vv
clus              CLUS_9
  SMEK1 MUTATED        1
  SMEK1 WILD-TYPE     73
D2210V10, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             0              28
  CLUS_4             2              78
  CLUS_5             2              67
  CLUS_6             0              48
  CLUS_7             1              42
  CLUS_8             1              27
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMEK1 MUTATED        1      0      1      2
  SMEK1 WILD-TYPE     32     31     26     17
D2210V11, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             1              26
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMEK1 MUTATED        2      0      0      2
  SMEK1 WILD-TYPE     52     10     24     20
D2210V12, multiclass
        clus
vv       SMEK1 MUTATED SMEK1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             2              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2211) Variable = TSC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        2      0      0      3
  TSC1 WILD-TYPE     44     58     64     40
D2211V1, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            0             58
  CLUS_3            0             64
  CLUS_4            3             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        3      1      1
  TSC1 WILD-TYPE     48     82     76
D2211V2, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            3             48
  CLUS_2            1             82
  CLUS_3            1             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED       12      1      1      0
  TSC1 WILD-TYPE    166    182    100     20
D2211V3, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1           12            166
  CLUS_2            1            182
  CLUS_3            1            100
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        1      2      6
  TSC1 WILD-TYPE     86     78     94
D2211V4, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            1             86
  CLUS_2            2             78
  CLUS_3            6             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        1      5      6
  TSC1 WILD-TYPE     88    155    132
D2211V5, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            6            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        8      4      0
  TSC1 WILD-TYPE    174    129     72
D2211V6, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            8            174
  CLUS_2            4            129
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        2      2      5      5
  TSC1 WILD-TYPE    110     94     87    181
D2211V7, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            2             94
  CLUS_3            5             87
  CLUS_4            5            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSC1 MUTATED        2      1      5      1      1      1      3
  TSC1 WILD-TYPE     58     49     44     39     62    124     96
D2211V8, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            2             58
  CLUS_2            1             49
  CLUS_3            5             44
  CLUS_4            1             39
  CLUS_5            1             62
  CLUS_6            1            124
  CLUS_7            3             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        8      0      0      5
  TSC1 WILD-TYPE    122     78     68    191
D2211V9, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            8            122
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            5            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  TSC1 MUTATED        2      2      0      3      5      0      1      0      0
  TSC1 WILD-TYPE     38     60     28     77     64     48     42     28     74
D2211V10, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            2             38
  CLUS_2            2             60
  CLUS_3            0             28
  CLUS_4            3             77
  CLUS_5            5             64
  CLUS_6            0             48
  CLUS_7            1             42
  CLUS_8            0             28
  CLUS_9            0             74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        0      0      0      3
  TSC1 WILD-TYPE     33     31     27     16
D2211V11, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             31
  CLUS_3            0             27
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        3      0      0      0
  TSC1 WILD-TYPE     51     10     24     22
D2211V12, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            3             51
  CLUS_2            0             10
  CLUS_3            0             24
  CLUS_4            0             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2212) Variable = HPCA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPCA MUTATED        0      0      0      0
  HPCA WILD-TYPE     46     58     64     43
D2212V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPCA MUTATED        0      0      0
  HPCA WILD-TYPE     51     83     77
D2212V2, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPCA MUTATED        5      1      0      0
  HPCA WILD-TYPE    173    182    101     20
D2212V3, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            5            173
  CLUS_2            1            182
  CLUS_3            0            101
  CLUS_4            0             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPCA MUTATED        1      0      4
  HPCA WILD-TYPE     86     80     96
D2212V4, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            1             86
  CLUS_2            0             80
  CLUS_3            4             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPCA MUTATED        1      5      0
  HPCA WILD-TYPE     88    155    138
D2212V5, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            1             88
  CLUS_2            5            155
  CLUS_3            0            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HPCA MUTATED        2      3      1
  HPCA WILD-TYPE    180    130     71
D2212V6, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            2            180
  CLUS_2            3            130
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPCA MUTATED        1      2      1      2
  HPCA WILD-TYPE    111     94     91    184
D2212V7, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             94
  CLUS_3            1             91
  CLUS_4            2            184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HPCA MUTATED        1      1      2      0      0      0      2
  HPCA WILD-TYPE     59     49     47     40     63    125     97
D2212V8, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            1             59
  CLUS_2            1             49
  CLUS_3            2             47
  CLUS_4            0             40
  CLUS_5            0             63
  CLUS_6            0            125
  CLUS_7            2             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPCA MUTATED        4      0      0      2
  HPCA WILD-TYPE    126     78     68    194
D2212V9, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            4            126
  CLUS_2            0             78
  CLUS_3            0             68
  CLUS_4            2            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
  HPCA MUTATED        0      1      1      1      2      0      0      0      1
  HPCA WILD-TYPE     40     61     27     79     67     48     43     28     73
D2212V10, multiclass
        clus
vv       HPCA MUTATED HPCA WILD-TYPE
  CLUS_1            0             40
  CLUS_2            1             61
  CLUS_3            1             27
  CLUS_4            1             79
  CLUS_5            2             67
  CLUS_6            0             48
  CLUS_7            0             43
  CLUS_8            0             28
  CLUS_9            1             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPCA MUTATED        0      0      0      1
  HPCA WILD-TYPE     33     31     27     18
D2212V11, multiclass
[1] "Remove cluster labels:" "HPCA MUTATED"          
clus
  HPCA MUTATED HPCA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-G5-6641 
"HPCA WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HPCA MUTATED        1      0      0      0
  HPCA WILD-TYPE     53     10     24     22
D2212V12, multiclass
[1] "Remove cluster labels:" "HPCA MUTATED"          
clus
  HPCA MUTATED HPCA WILD-TYPE 
             1            109 
    TCGA-A6-5657     TCGA-A6-6137     TCGA-A6-6138     TCGA-A6-6141 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-A6-6142     TCGA-A6-6649     TCGA-A6-6651     TCGA-A6-6653 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-A6-6654     TCGA-A6-6781     TCGA-A6-6782     TCGA-AA-3489 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AA-3511     TCGA-AD-5900     TCGA-AD-6548     TCGA-AD-6889 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AD-6901     TCGA-AD-6963     TCGA-AD-6964     TCGA-AD-6965 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AF-2687     TCGA-AF-4110     TCGA-AF-6655     TCGA-AF-6672 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AG-3731     TCGA-AG-3732     TCGA-AH-6544     TCGA-AH-6547 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AH-6549     TCGA-AH-6643     TCGA-AY-6196     TCGA-AZ-4323 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AZ-4616     TCGA-AZ-5403     TCGA-AZ-6598     TCGA-AZ-6600 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-AZ-6601     TCGA-AZ-6603     TCGA-AZ-6605     TCGA-AZ-6607 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CA-6718     TCGA-CA-6719     TCGA-CI-6619     TCGA-CI-6620 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CI-6621     TCGA-CI-6624     TCGA-CK-5916     TCGA-CK-6748 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CL-5918     TCGA-CM-5860     TCGA-CM-6167     TCGA-CM-6674 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CM-6676     TCGA-CM-6677     TCGA-CM-6678     TCGA-CM-6679 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-CM-6680     TCGA-D5-5537     TCGA-D5-6533     TCGA-D5-6534 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-D5-6536     TCGA-D5-6922     TCGA-D5-6924     TCGA-DC-5337 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DC-5869     TCGA-DC-6157     TCGA-DC-6158     TCGA-DC-6681 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DC-6682     TCGA-DC-6683     TCGA-DM-A0XD     TCGA-DM-A0XF 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DM-A1D0     TCGA-DM-A1D7     TCGA-DM-A1D8     TCGA-DM-A1D9 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DM-A1DA     TCGA-DM-A1HA     TCGA-DM-A282     TCGA-DM-A285 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DM-A28F     TCGA-DY-A1DC     TCGA-DY-A1DD     TCGA-DY-A1DG 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-DY-A1H8     TCGA-EI-6506     TCGA-EI-6507     TCGA-F4-6459 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F4-6460     TCGA-F4-6569     TCGA-F4-6704     TCGA-F4-6805 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F4-6807     TCGA-F4-6808     TCGA-F4-6809     TCGA-F5-6464 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F5-6465     TCGA-F5-6571     TCGA-F5-6702     TCGA-F5-6811 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-F5-6812     TCGA-G4-6299     TCGA-G4-6303     TCGA-G4-6306 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-G4-6309     TCGA-G4-6625     TCGA-G4-6628     TCGA-G5-6235 
"HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" "HPCA WILD-TYPE" 
    TCGA-G5-6641 
"HPCA WILD-TYPE" 

Clustering(2213) Variable = EIF2B3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B3 MUTATED        1      0      1      0
  EIF2B3 WILD-TYPE     45     58     63     43
D2213V1, multiclass
[1] "Remove cluster labels:" "EIF2B3 MUTATED"        
clus
  EIF2B3 MUTATED EIF2B3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3952 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AY-4071 
"EIF2B3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B3 MUTATED        1      0      1
  EIF2B3 WILD-TYPE     50     83     76
D2213V2, multiclass
[1] "Remove cluster labels:" "EIF2B3 MUTATED"        
clus
  EIF2B3 MUTATED EIF2B3 WILD-TYPE 
               2              209 
      TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676       TCGA-A6-2677 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-A6-3809       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3558       TCGA-AA-3560 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3561       TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3667       TCGA-AA-3672       TCGA-AA-3673       TCGA-AA-3678 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681       TCGA-AA-3684 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692       TCGA-AA-3693 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3696       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3812       TCGA-AA-3814       TCGA-AA-3815       TCGA-AA-3818 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831       TCGA-AA-3833 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3845 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3854       TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3860       TCGA-AA-3861       TCGA-AA-3864       TCGA-AA-3866 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870       TCGA-AA-3872 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930       TCGA-AA-3939 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3950       TCGA-AA-3952 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966       TCGA-AA-3968 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973       TCGA-AA-3975 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3977       TCGA-AA-3979       TCGA-AA-3980 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01Q 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AA-A02J       TCGA-AA-A02W       TCGA-AF-2689       TCGA-AF-2691 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3885 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3894       TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-3902       TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-4005       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A025       TCGA-AG-A026 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AY-4070 
"EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" "EIF2B3 WILD-TYPE" 
      TCGA-AY-4071 
"EIF2B3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B3 MUTATED        4      0      2      0
  EIF2B3 WILD-TYPE    174    183     99     20
D2213V3, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              4              174
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B3 MUTATED        3      1      0
  EIF2B3 WILD-TYPE     84     79    100
D2213V4, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              1               79
  CLUS_3              0              100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B3 MUTATED        1      1      3
  EIF2B3 WILD-TYPE     88    159    135
D2213V5, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              1              159
  CLUS_3              3              135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF2B3 MUTATED        3      2      0
  EIF2B3 WILD-TYPE    179    131     72
D2213V6, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              3              179
  CLUS_2              2              131
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B3 MUTATED        1      1      2      2
  EIF2B3 WILD-TYPE    111     95     90    184
D2213V7, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              1               95
  CLUS_3              2               90
  CLUS_4              2              184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF2B3 MUTATED        0      1      2      0      1      1      1
  EIF2B3 WILD-TYPE     60     49     47     40     62    124     98
D2213V8, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              1               49
  CLUS_3              2               47
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B3 MUTATED        0      3      0      3
  EIF2B3 WILD-TYPE    130     75     68    193
D2213V9, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              0              130
  CLUS_2              3               75
  CLUS_3              0               68
  CLUS_4              3              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  EIF2B3 MUTATED        0      3      0      0      0      0      0      1
  EIF2B3 WILD-TYPE     40     59     28     80     69     48     43     27
                  vv
clus               CLUS_9
  EIF2B3 MUTATED        2
  EIF2B3 WILD-TYPE     72
D2213V10, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              0               69
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              1               27
  CLUS_9              2               72
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B3 MUTATED        1      1      0      1
  EIF2B3 WILD-TYPE     32     30     27     18
D2213V11, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               30
  CLUS_3              0               27
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2B3 MUTATED        2      1      0      0
  EIF2B3 WILD-TYPE     52      9     24     22
D2213V12, multiclass
        clus
vv       EIF2B3 MUTATED EIF2B3 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              1                9
  CLUS_3              0               24
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2214) Variable = LRIG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        0      0      1      3
  LRIG1 WILD-TYPE     46     58     63     40
D2214V1, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              58
  CLUS_3             1              63
  CLUS_4             3              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        1      2      1
  LRIG1 WILD-TYPE     50     81     76
D2214V2, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              50
  CLUS_2             2              81
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        9      3      2      1
  LRIG1 WILD-TYPE    169    180     99     19
D2214V3, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             9             169
  CLUS_2             3             180
  CLUS_3             2              99
  CLUS_4             1              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        5      1      4
  LRIG1 WILD-TYPE     82     79     96
D2214V4, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             5              82
  CLUS_2             1              79
  CLUS_3             4              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        3      4      7
  LRIG1 WILD-TYPE     86    156    131
D2214V5, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             4             156
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        8      6      0
  LRIG1 WILD-TYPE    174    127     72
D2214V6, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             8             174
  CLUS_2             6             127
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        1      4      5      5
  LRIG1 WILD-TYPE    111     92     87    181
D2214V7, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             4              92
  CLUS_3             5              87
  CLUS_4             5             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LRIG1 MUTATED        2      1      6      0      1      2      3
  LRIG1 WILD-TYPE     58     49     43     40     62    123     96
D2214V8, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             2              58
  CLUS_2             1              49
  CLUS_3             6              43
  CLUS_4             0              40
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             3              96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        6      2      0      7
  LRIG1 WILD-TYPE    124     76     68    189
D2214V9, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             6             124
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             7             189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  LRIG1 MUTATED        1      2      3      2      6      0      0      0
  LRIG1 WILD-TYPE     39     60     25     78     63     48     43     28
                 vv
clus              CLUS_9
  LRIG1 MUTATED        1
  LRIG1 WILD-TYPE     73
D2214V10, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              39
  CLUS_2             2              60
  CLUS_3             3              25
  CLUS_4             2              78
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        2      0      0      2
  LRIG1 WILD-TYPE     31     31     27     17
D2214V11, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        2      0      2      0
  LRIG1 WILD-TYPE     52     10     22     22
D2214V12, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             0              10
  CLUS_3             2              22
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2215) Variable = SEC14L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L1 MUTATED        1      0      0      2
  SEC14L1 WILD-TYPE     45     58     64     41
D2215V1, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               0                58
  CLUS_3               0                64
  CLUS_4               2                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L1 MUTATED        2      0      1
  SEC14L1 WILD-TYPE     49     83     76
D2215V2, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               2                49
  CLUS_2               0                83
  CLUS_3               1                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L1 MUTATED        8      2      0      0
  SEC14L1 WILD-TYPE    170    181    101     20
D2215V3, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               8               170
  CLUS_2               2               181
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L1 MUTATED        2      1      4
  SEC14L1 WILD-TYPE     85     79     96
D2215V4, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               2                85
  CLUS_2               1                79
  CLUS_3               4                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L1 MUTATED        1      2      7
  SEC14L1 WILD-TYPE     88    158    131
D2215V5, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               1                88
  CLUS_2               2               158
  CLUS_3               7               131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SEC14L1 MUTATED        7      3      0
  SEC14L1 WILD-TYPE    175    130     72
D2215V6, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               7               175
  CLUS_2               3               130
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L1 MUTATED        1      4      2      4
  SEC14L1 WILD-TYPE    111     92     90    182
D2215V7, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               4                92
  CLUS_3               2                90
  CLUS_4               4               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SEC14L1 MUTATED        2      1      5      0      0      0      3
  SEC14L1 WILD-TYPE     58     49     44     40     63    125     96
D2215V8, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               1                49
  CLUS_3               5                44
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               3                96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L1 MUTATED        4      2      0      4
  SEC14L1 WILD-TYPE    126     76     68    192
D2215V9, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               4               126
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4               4               192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SEC14L1 MUTATED        1      2      0      0      6      1      0      0
  SEC14L1 WILD-TYPE     39     60     28     80     63     47     43     28
                   vv
clus                CLUS_9
  SEC14L1 MUTATED        0
  SEC14L1 WILD-TYPE     74
D2215V10, multiclass
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               6                63
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L1 MUTATED        0      0      0      2
  SEC14L1 WILD-TYPE     33     31     27     17
D2215V11, multiclass
[1] "Remove cluster labels:" "SEC14L1 MUTATED"       
clus
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC14L1 MUTATED        1      0      0      1
  SEC14L1 WILD-TYPE     53     10     24     21
D2215V12, multiclass
[1] "Remove cluster labels:" "SEC14L1 MUTATED"       
clus
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
                2               108 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607        TCGA-CA-6718 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CI-6624        TCGA-CK-5916        TCGA-CK-6748        TCGA-CL-5918 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6534        TCGA-D5-6536        TCGA-D5-6922 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6157 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0        TCGA-DM-A1D7 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA        TCGA-DM-A1HA 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F        TCGA-DY-A1DC 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EI-6506 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460        TCGA-F4-6569 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805        TCGA-F4-6807 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464        TCGA-F5-6465 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811        TCGA-F5-6812 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306        TCGA-G4-6309 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235        TCGA-G5-6641 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 

Clustering(2216) Variable = ZNF142 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        0      2      0      4
  ZNF142 WILD-TYPE     46     56     64     39
D2216V1, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              2               56
  CLUS_3              0               64
  CLUS_4              4               39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF142 MUTATED        3      3      0
  ZNF142 WILD-TYPE     48     80     77
D2216V2, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              3               48
  CLUS_2              3               80
  CLUS_3              0               77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED       13      0      2      0
  ZNF142 WILD-TYPE    165    183     99     20
D2216V3, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1             13              165
  CLUS_2              0              183
  CLUS_3              2               99
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF142 MUTATED        1      0      8
  ZNF142 WILD-TYPE     86     80     92
D2216V4, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              1               86
  CLUS_2              0               80
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF142 MUTATED        4      3      5
  ZNF142 WILD-TYPE     85    157    133
D2216V5, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              3              157
  CLUS_3              5              133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF142 MUTATED        7      3      2
  ZNF142 WILD-TYPE    175    130     70
D2216V6, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              7              175
  CLUS_2              3              130
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        1      6      3      5
  ZNF142 WILD-TYPE    111     90     89    181
D2216V7, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              6               90
  CLUS_3              3               89
  CLUS_4              5              181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF142 MUTATED        0      0      9      0      0      2      4
  ZNF142 WILD-TYPE     60     50     40     40     63    123     95
D2216V8, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              9               40
  CLUS_4              0               40
  CLUS_5              0               63
  CLUS_6              2              123
  CLUS_7              4               95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        8      0      1      4
  ZNF142 WILD-TYPE    122     78     67    192
D2216V9, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              8              122
  CLUS_2              0               78
  CLUS_3              1               67
  CLUS_4              4              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ZNF142 MUTATED        1      1      1      0      8      0      1      0
  ZNF142 WILD-TYPE     39     61     27     80     61     48     42     28
                  vv
clus               CLUS_9
  ZNF142 MUTATED        1
  ZNF142 WILD-TYPE     73
D2216V10, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              1               39
  CLUS_2              1               61
  CLUS_3              1               27
  CLUS_4              0               80
  CLUS_5              8               61
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        0      0      0      3
  ZNF142 WILD-TYPE     33     31     27     16
D2216V11, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        2      0      1      0
  ZNF142 WILD-TYPE     52     10     23     22
D2216V12, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              1               23
  CLUS_4              0               22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2217) Variable = SLC22A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A4 MUTATED        1      0      0      0
  SLC22A4 WILD-TYPE     45     58     64     43
D2217V1, multiclass
[1] "Remove cluster labels:" "SLC22A4 MUTATED"       
clus
  SLC22A4 MUTATED SLC22A4 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3837 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A4 MUTATED        1      0      0
  SLC22A4 WILD-TYPE     50     83     77
D2217V2, multiclass
[1] "Remove cluster labels:" "SLC22A4 MUTATED"       
clus
  SLC22A4 MUTATED SLC22A4 WILD-TYPE 
                1               210 
       TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676        TCGA-A6-2677 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-3809        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3561        TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3667        TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3679        TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3815        TCGA-AA-3818 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3837 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3861        TCGA-AA-3864        TCGA-AA-3866 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3875        TCGA-AA-3877        TCGA-AA-3930        TCGA-AA-3939 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3950 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3968        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02W        TCGA-AF-2689 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3885        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A025 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A4 MUTATED        5      0      0      0
  SLC22A4 WILD-TYPE    173    183    101     20
D2217V3, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               5               173
  CLUS_2               0               183
  CLUS_3               0               101
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A4 MUTATED        1      0      3
  SLC22A4 WILD-TYPE     86     80     97
D2217V4, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               1                86
  CLUS_2               0                80
  CLUS_3               3                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A4 MUTATED        0      2      3
  SLC22A4 WILD-TYPE     89    158    135
D2217V5, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               0                89
  CLUS_2               2               158
  CLUS_3               3               135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A4 MUTATED        4      1      0
  SLC22A4 WILD-TYPE    178    132     72
D2217V6, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               4               178
  CLUS_2               1               132
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A4 MUTATED        0      2      2      1
  SLC22A4 WILD-TYPE    112     94     90    185
D2217V7, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               0               112
  CLUS_2               2                94
  CLUS_3               2                90
  CLUS_4               1               185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SLC22A4 MUTATED        0      0      4      0      0      0      1
  SLC22A4 WILD-TYPE     60     50     45     40     63    125     98
D2217V8, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               0                60
  CLUS_2               0                50
  CLUS_3               4                45
  CLUS_4               0                40
  CLUS_5               0                63
  CLUS_6               0               125
  CLUS_7               1                98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A4 MUTATED        3      0      0      2
  SLC22A4 WILD-TYPE    127     78     68    194
D2217V9, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               3               127
  CLUS_2               0                78
  CLUS_3               0                68
  CLUS_4               2               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  SLC22A4 MUTATED        0      2      0      0      2      0      0      1
  SLC22A4 WILD-TYPE     40     60     28     80     67     48     43     27
                   vv
clus                CLUS_9
  SLC22A4 MUTATED        0
  SLC22A4 WILD-TYPE     74
D2217V10, multiclass
        clus
vv       SLC22A4 MUTATED SLC22A4 WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                60
  CLUS_3               0                28
  CLUS_4               0                80
  CLUS_5               2                67
  CLUS_6               0                48
  CLUS_7               0                43
  CLUS_8               1                27
  CLUS_9               0                74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A4 MUTATED        0      0      0      1
  SLC22A4 WILD-TYPE     33     31     27     18
D2217V11, multiclass
[1] "Remove cluster labels:" "SLC22A4 MUTATED"       
clus
  SLC22A4 MUTATED SLC22A4 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-G5-6641 
"SLC22A4 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A4 MUTATED        1      0      0      0
  SLC22A4 WILD-TYPE     53     10     24     22
D2217V12, multiclass
[1] "Remove cluster labels:" "SLC22A4 MUTATED"       
clus
  SLC22A4 MUTATED SLC22A4 WILD-TYPE 
                1               109 
       TCGA-A6-5657        TCGA-A6-6137        TCGA-A6-6138        TCGA-A6-6141 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-6142        TCGA-A6-6649        TCGA-A6-6651        TCGA-A6-6653 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-A6-6654        TCGA-A6-6781        TCGA-A6-6782        TCGA-AA-3489 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AA-3511        TCGA-AD-5900        TCGA-AD-6548        TCGA-AD-6889 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AD-6901        TCGA-AD-6963        TCGA-AD-6964        TCGA-AD-6965 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AF-2687        TCGA-AF-4110        TCGA-AF-6655        TCGA-AF-6672 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AH-6544        TCGA-AH-6547 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AH-6549        TCGA-AH-6643        TCGA-AY-6196        TCGA-AZ-4323 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AZ-4616        TCGA-AZ-5403        TCGA-AZ-6598        TCGA-AZ-6600 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-AZ-6601        TCGA-AZ-6603        TCGA-AZ-6605        TCGA-AZ-6607 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CA-6718        TCGA-CA-6719        TCGA-CI-6619        TCGA-CI-6620 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6624        TCGA-CK-6748        TCGA-CL-5918 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CM-5860        TCGA-CM-6167        TCGA-CM-6674        TCGA-CM-6676 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-CM-6677        TCGA-CM-6678        TCGA-CM-6679        TCGA-CM-6680 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-D5-5537        TCGA-D5-6533        TCGA-D5-6534        TCGA-D5-6536 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-D5-6922        TCGA-D5-6924        TCGA-DC-5337        TCGA-DC-5869 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6681        TCGA-DC-6682 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DC-6683        TCGA-DM-A0XD        TCGA-DM-A0XF        TCGA-DM-A1D0 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DM-A1D7        TCGA-DM-A1D8        TCGA-DM-A1D9        TCGA-DM-A1DA 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DM-A1HA        TCGA-DM-A282        TCGA-DM-A285        TCGA-DM-A28F 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DG        TCGA-DY-A1H8 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-F4-6459        TCGA-F4-6460 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F4-6569        TCGA-F4-6570        TCGA-F4-6704        TCGA-F4-6805 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F4-6807        TCGA-F4-6808        TCGA-F4-6809        TCGA-F5-6464 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6811 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-F5-6812        TCGA-G4-6299        TCGA-G4-6303        TCGA-G4-6306 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-G4-6309        TCGA-G4-6625        TCGA-G4-6628        TCGA-G5-6235 
"SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" "SLC22A4 WILD-TYPE" 
       TCGA-G5-6641 
"SLC22A4 WILD-TYPE" 

Clustering(2218) Variable = KLHDC9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC9 MUTATED        0      0      0      0
  KLHDC9 WILD-TYPE     46     58     64     43
D2218V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHDC9 MUTATED        0      0      0
  KLHDC9 WILD-TYPE     51     83     77
D2218V2, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC9 MUTATED        5      0      0      0
  KLHDC9 WILD-TYPE    173    183    101     20
D2218V3, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              5              173
  CLUS_2              0              183
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHDC9 MUTATED        3      0      2
  KLHDC9 WILD-TYPE     84     80     98
D2218V4, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              3               84
  CLUS_2              0               80
  CLUS_3              2               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHDC9 MUTATED        1      0      4
  KLHDC9 WILD-TYPE     88    160    134
D2218V5, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              0              160
  CLUS_3              4              134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHDC9 MUTATED        4      0      1
  KLHDC9 WILD-TYPE    178    133     71
D2218V6, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              4              178
  CLUS_2              0              133
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC9 MUTATED        0      3      2      0
  KLHDC9 WILD-TYPE    112     93     90    186
D2218V7, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              0              112
  CLUS_2              3               93
  CLUS_3              2               90
  CLUS_4              0              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KLHDC9 MUTATED        0      0      4      0      1      0      0
  KLHDC9 WILD-TYPE     60     50     45     40     62    125     99
D2218V8, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              0               60
  CLUS_2              0               50
  CLUS_3              4               45
  CLUS_4              0               40
  CLUS_5              1               62
  CLUS_6              0              125
  CLUS_7              0               99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC9 MUTATED        2      2      0      1
  KLHDC9 WILD-TYPE    128     76     68    195
D2218V9, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              2              128
  CLUS_2              2               76
  CLUS_3              0               68
  CLUS_4              1              195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  KLHDC9 MUTATED        0      3      0      0      2      0      0      0
  KLHDC9 WILD-TYPE     40     59     28     80     67     48     43     28
                  vv
clus               CLUS_9
  KLHDC9 MUTATED        0
  KLHDC9 WILD-TYPE     74
D2218V10, multiclass
        clus
vv       KLHDC9 MUTATED KLHDC9 WILD-TYPE
  CLUS_1              0               40
  CLUS_2              3               59
  CLUS_3              0               28
  CLUS_4              0               80
  CLUS_5              2               67
  CLUS_6              0               48
  CLUS_7              0               43
  CLUS_8              0               28
  CLUS_9              0               74
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC9 MUTATED        0      0      0      0
  KLHDC9 WILD-TYPE     33     31     27     19
D2218V11, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC9 MUTATED        0      0      0      0
  KLHDC9 WILD-TYPE     54     10     24     22
D2218V12, multiclass

Clustering(2219) Variable = ANKRD12 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        4      0      1      6
  ANKRD12 WILD-TYPE     42     58     63     37
D2219V1, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                58
  CLUS_3               1                63
  CLUS_4               6                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD12 MUTATED        5      3      3
  ANKRD12 WILD-TYPE     46     80     74
D2219V2, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               5                46
  CLUS_2               3                80
  CLUS_3               3                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED       20      1      4      0
  ANKRD12 WILD-TYPE    158    182     97     20
D2219V3, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1              20               158
  CLUS_2               1               182
  CLUS_3               4                97
  CLUS_4               0                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD12 MUTATED        5      1      9
  ANKRD12 WILD-TYPE     82     79     91
D2219V4, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               5                82
  CLUS_2               1                79
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD12 MUTATED        4      8     10
  ANKRD12 WILD-TYPE     85    152    128
D2219V5, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               4                85
  CLUS_2               8               152
  CLUS_3              10               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD12 MUTATED       11      9      2
  ANKRD12 WILD-TYPE    171    124     70
D2219V6, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1              11               171
  CLUS_2               9               124
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        2      7      6     11
  ANKRD12 WILD-TYPE    110     89     86    175
D2219V7, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               2               110
  CLUS_2               7                89
  CLUS_3               6                86
  CLUS_4              11               175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD12 MUTATED        2      3      8      1      1      2      9
  ANKRD12 WILD-TYPE     58     47     41     39     62    123     90
D2219V8, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               2                58
  CLUS_2               3                47
  CLUS_3               8                41
  CLUS_4               1                39
  CLUS_5               1                62
  CLUS_6               2               123
  CLUS_7               9                90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        9      2      0     14
  ANKRD12 WILD-TYPE    121     76     68    182
D2219V9, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               9               121
  CLUS_2               2                76
  CLUS_3               0                68
  CLUS_4              14               182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  ANKRD12 MUTATED        1      6      4      3      9      1      0      0
  ANKRD12 WILD-TYPE     39     56     24     77     60     47     43     28
                   vv
clus                CLUS_9
  ANKRD12 MUTATED        1
  ANKRD12 WILD-TYPE     73
D2219V10, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               1                39
  CLUS_2               6                56
  CLUS_3               4                24
  CLUS_4               3                77
  CLUS_5               9                60
  CLUS_6               1                47
  CLUS_7               0                43
  CLUS_8               0                28
  CLUS_9               1                73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        1      0      0      2
  ANKRD12 WILD-TYPE     32     31     27     17
D2219V11, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                31
  CLUS_3               0                27
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        3      0      0      0
  ANKRD12 WILD-TYPE     51     10     24     22
D2219V12, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                10
  CLUS_3               0                24
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2220) Variable = CTNND1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        1      0      0      2
  CTNND1 WILD-TYPE     45     58     64     41
D2220V1, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               58
  CLUS_3              0               64
  CLUS_4              2               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        0      2      1
  CTNND1 WILD-TYPE     51     81     76
D2220V2, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              0               51
  CLUS_2              2               81
  CLUS_3              1               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED       18      2      0      0
  CTNND1 WILD-TYPE    160    181    101     20
D2220V3, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1             18              160
  CLUS_2              2              181
  CLUS_3              0              101
  CLUS_4              0               20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        8      1      8
  CTNND1 WILD-TYPE     79     79     92
D2220V4, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              8               79
  CLUS_2              1               79
  CLUS_3              8               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        2      6      9
  CTNND1 WILD-TYPE     87    154    129
D2220V5, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              6              154
  CLUS_3              9              129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        8      7      2
  CTNND1 WILD-TYPE    174    126     70
D2220V6, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              8              174
  CLUS_2              7              126
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        2      9      6      3
  CTNND1 WILD-TYPE    110     87     86    183
D2220V7, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              9               87
  CLUS_3              6               86
  CLUS_4              3              183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CTNND1 MUTATED        2      3     11      1      1      1      1
  CTNND1 WILD-TYPE     58     47     38     39     62    124     98
D2220V8, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               58
  CLUS_2              3               47
  CLUS_3             11               38
  CLUS_4              1               39
  CLUS_5              1               62
  CLUS_6              1              124
  CLUS_7              1               98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        9      5      1      5
  CTNND1 WILD-TYPE    121     73     67    191
D2220V9, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              9              121
  CLUS_2              5               73
  CLUS_3              1               67
  CLUS_4              5              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  CTNND1 MUTATED        3      6      2      1      6      0      1      0
  CTNND1 WILD-TYPE     37     56     26     79     63     48     42     28
                  vv
clus               CLUS_9
  CTNND1 MUTATED        1
  CTNND1 WILD-TYPE     73
D2220V10, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              3               37
  CLUS_2              6               56
  CLUS_3              2               26
  CLUS_4              1               79
  CLUS_5              6               63
  CLUS_6              0               48
  CLUS_7              1               42
  CLUS_8              0               28
  CLUS_9              1               73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        2      0      0      3
  CTNND1 WILD-TYPE     31     31     27     16
D2220V11, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               31
  CLUS_3              0               27
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        2      0      2      1
  CTNND1 WILD-TYPE     52     10     22     21
D2220V12, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               52
  CLUS_2              0               10
  CLUS_3              2               22
  CLUS_4              1               21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2221) Variable = RBM16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        2      0      0      4
  RBM16 WILD-TYPE     44     58     64     39
D2221V1, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              58
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        4      1      1
  RBM16 WILD-TYPE     47     82     76
D2221V2, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             4              47
  CLUS_2             1              82
  CLUS_3             1              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED       13      3      0      0
  RBM16 WILD-TYPE    165    180    101     20
D2221V3, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1            13             165
  CLUS_2             3             180
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        4      1      6
  RBM16 WILD-TYPE     83     79     94
D2221V4, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             4              83
  CLUS_2             1              79
  CLUS_3             6              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        0      8      5
  RBM16 WILD-TYPE     89    152    133
D2221V5, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             8             152
  CLUS_3             5             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        5      6      2
  RBM16 WILD-TYPE    177    127     70
D2221V6, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             5             177
  CLUS_2             6             127
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        2      5      3      6
  RBM16 WILD-TYPE    110     91     89    180
D2221V7, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             5              91
  CLUS_3             3              89
  CLUS_4             6             180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM16 MUTATED        3      1      5      0      2      0      5
  RBM16 WILD-TYPE     57     49     44     40     61    125     94
D2221V8, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             3              57
  CLUS_2             1              49
  CLUS_3             5              44
  CLUS_4             0              40
  CLUS_5             2              61
  CLUS_6             0             125
  CLUS_7             5              94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        7      2      0      6
  RBM16 WILD-TYPE    123     76     68    190
D2221V9, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4             6             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RBM16 MUTATED        0      2      1      5      6      0      0      0
  RBM16 WILD-TYPE     40     60     27     75     63     48     43     28
                 vv
clus              CLUS_9
  RBM16 MUTATED        1
  RBM16 WILD-TYPE     73
D2221V10, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             0              40
  CLUS_2             2              60
  CLUS_3             1              27
  CLUS_4             5              75
  CLUS_5             6              63
  CLUS_6             0              48
  CLUS_7             0              43
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        1      0      0      3
  RBM16 WILD-TYPE     32     31     27     16
D2221V11, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        1      0      3      0
  RBM16 WILD-TYPE     53     10     21     22
D2221V12, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              53
  CLUS_2             0              10
  CLUS_3             3              21
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2222) Variable = RASA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        3      1      0      4
  RASA1 WILD-TYPE     43     57     64     39
D2222V1, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              57
  CLUS_3             0              64
  CLUS_4             4              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        3      3      2
  RASA1 WILD-TYPE     48     80     75
D2222V2, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              48
  CLUS_2             3              80
  CLUS_3             2              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED       17      1      0      0
  RASA1 WILD-TYPE    161    182    101     20
D2222V3, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1            17             161
  CLUS_2             1             182
  CLUS_3             0             101
  CLUS_4             0              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        3      0      9
  RASA1 WILD-TYPE     84     80     91
D2222V4, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              84
  CLUS_2             0              80
  CLUS_3             9              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        3      7      7
  RASA1 WILD-TYPE     86    153    131
D2222V5, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             7             153
  CLUS_3             7             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        7      6      4
  RASA1 WILD-TYPE    175    127     68
D2222V6, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             175
  CLUS_2             6             127
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        1      7      4      7
  RASA1 WILD-TYPE    111     89     88    179
D2222V7, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             7              89
  CLUS_3             4              88
  CLUS_4             7             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RASA1 MUTATED        1      2      6      1      1      2      6
  RASA1 WILD-TYPE     59     48     43     39     62    123     93
D2222V8, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             1              59
  CLUS_2             2              48
  CLUS_3             6              43
  CLUS_4             1              39
  CLUS_5             1              62
  CLUS_6             2             123
  CLUS_7             6              93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        7      2      0     10
  RASA1 WILD-TYPE    123     76     68    186
D2222V9, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             123
  CLUS_2             2              76
  CLUS_3             0              68
  CLUS_4            10             186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  RASA1 MUTATED        2      2      2      3      6      1      2      0
  RASA1 WILD-TYPE     38     60     26     77     63     47     41     28
                 vv
clus              CLUS_9
  RASA1 MUTATED        1
  RASA1 WILD-TYPE     73
D2222V10, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             2              38
  CLUS_2             2              60
  CLUS_3             2              26
  CLUS_4             3              77
  CLUS_5             6              63
  CLUS_6             1              47
  CLUS_7             2              41
  CLUS_8             0              28
  CLUS_9             1              73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        0      0      0      3
  RASA1 WILD-TYPE     33     31     27     16
D2222V11, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              31
  CLUS_3             0              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        3      0      0      0
  RASA1 WILD-TYPE     51     10     24     22
D2222V12, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              51
  CLUS_2             0              10
  CLUS_3             0              24
  CLUS_4             0              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
